Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668500 | P29500.1 | 99.556 | 450 | 2 | 0 | 1 | 450 | 1 | 450 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668500 | sp|P29500|TBB1_PEA | 99.556 | 450 | 2 | 0 | 1 | 450 | 1 | 450 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668500 | A0A2K3PRL8 | 99.335 | 451 | 2 | 1 | 1 | 450 | 1 | 451 | 0.0 | 939 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0617940 | Msa0668500 | 0.810692 | 1.015679e-50 | -8.615850e-47 |
| Msa0647440 | Msa0668500 | 0.802939 | 4.421444e-49 | -8.615850e-47 |
| Msa0668500 | Msa0930770 | 0.814121 | 1.810645e-51 | -8.615850e-47 |
| Msa0668500 | Msa1042300 | 0.816536 | 5.258275e-52 | -8.615850e-47 |
| Msa0668500 | Msa1402010 | 0.802520 | 5.396818e-49 | -8.615850e-47 |
| Msa0173250 | Msa0668500 | 0.805828 | 1.105427e-49 | -8.615850e-47 |
| Msa0416390 | Msa0668500 | 0.815691 | 8.119672e-52 | -8.615850e-47 |
| Msa0447870 | Msa0668500 | 0.803139 | 4.019260e-49 | -8.615850e-47 |
| Msa0276850 | Msa0668500 | 0.800515 | 1.390323e-48 | -8.615850e-47 |
| Msa0276860 | Msa0668500 | 0.823150 | 1.617515e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668500 | MtrunA17_Chr4g0007371 | 98.673 | 452 | 3 | 2 | 1 | 450 | 1 | 451 | 0.0 | 929 |
| Msa0668500 | MtrunA17_Chr4g0008401 | 96.047 | 430 | 17 | 0 | 1 | 430 | 1 | 430 | 0.0 | 850 |
| Msa0668500 | MtrunA17_Chr4g0008361 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| Msa0668500 | MtrunA17_Chr1g0203181 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| Msa0668500 | MtrunA17_Chr4g0051631 | 95.116 | 430 | 21 | 0 | 1 | 430 | 1 | 430 | 0.0 | 842 |
| Msa0668500 | MtrunA17_Chr2g0292921 | 94.884 | 430 | 22 | 0 | 1 | 430 | 1 | 430 | 0.0 | 841 |
| Msa0668500 | MtrunA17_Chr7g0255791 | 94.419 | 430 | 24 | 0 | 1 | 430 | 1 | 430 | 0.0 | 837 |
| Msa0668500 | MtrunA17_Chr3g0142731 | 93.056 | 432 | 28 | 1 | 1 | 430 | 1 | 432 | 0.0 | 825 |
| Msa0668500 | MtrunA17_Chr8g0386781 | 90.698 | 430 | 40 | 0 | 1 | 430 | 1 | 430 | 0.0 | 815 |
| Msa0668500 | MtrunA17_Chr8g0393021 | 90.271 | 442 | 40 | 2 | 1 | 439 | 1 | 442 | 0.0 | 814 |
| Msa0668500 | MtrunA17_Chr8g0378821 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 6.13e-126 | 372 |
| Msa0668500 | MtrunA17_Chr3g0140821 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 1.59e-124 | 369 |
| Msa0668500 | MtrunA17_Chr1g0206881 | 41.203 | 449 | 251 | 3 | 1 | 439 | 1 | 446 | 3.36e-124 | 368 |
| Msa0668500 | MtrunA17_Chr7g0253411 | 40.783 | 434 | 247 | 2 | 1 | 424 | 1 | 434 | 8.35e-124 | 367 |
| Msa0668500 | MtrunA17_Chr4g0054511 | 41.244 | 434 | 245 | 2 | 1 | 424 | 1 | 434 | 1.33e-122 | 364 |
| Msa0668500 | MtrunA17_Chr6g0461281 | 40.541 | 444 | 253 | 2 | 1 | 433 | 1 | 444 | 5.69e-122 | 362 |
| Msa0668500 | MtrunA17_Chr2g0300671 | 37.727 | 440 | 261 | 4 | 1 | 431 | 1 | 436 | 2.25e-101 | 309 |
| Msa0668500 | MtrunA17_Chr2g0300491 | 36.889 | 450 | 273 | 3 | 1 | 442 | 1 | 447 | 1.37e-99 | 306 |
| Msa0668500 | MtrunA17_Chr7g0275431 | 36.073 | 438 | 263 | 7 | 2 | 423 | 3 | 439 | 4.78e-99 | 305 |
| Msa0668500 | MtrunA17_Chr3g0109241 | 32.593 | 135 | 83 | 1 | 269 | 395 | 4 | 138 | 1.04e-21 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668500 | AT5G62690.1 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 854 |
| Msa0668500 | AT5G62700.1 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 854 |
| Msa0668500 | AT5G23860.2 | 96.047 | 430 | 17 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| Msa0668500 | AT5G23860.1 | 96.047 | 430 | 17 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| Msa0668500 | AT2G29550.1 | 95.360 | 431 | 20 | 0 | 1 | 431 | 1 | 431 | 0.0 | 843 |
| Msa0668500 | AT1G75780.1 | 94.432 | 431 | 23 | 1 | 1 | 430 | 1 | 431 | 0.0 | 838 |
| Msa0668500 | AT5G12250.1 | 93.953 | 430 | 26 | 0 | 1 | 430 | 1 | 430 | 0.0 | 836 |
| Msa0668500 | AT4G20890.1 | 94.186 | 430 | 25 | 0 | 1 | 430 | 1 | 430 | 0.0 | 834 |
| Msa0668500 | AT5G44340.1 | 93.953 | 430 | 26 | 0 | 1 | 430 | 1 | 430 | 0.0 | 831 |
| Msa0668500 | AT1G20010.1 | 93.271 | 431 | 28 | 1 | 1 | 430 | 1 | 431 | 0.0 | 828 |
| Msa0668500 | AT1G64740.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 5.66e-126 | 373 |
| Msa0668500 | AT5G19780.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 2.25e-125 | 372 |
| Msa0668500 | AT5G19770.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 2.25e-125 | 372 |
| Msa0668500 | AT4G14960.2 | 41.781 | 438 | 242 | 3 | 1 | 428 | 1 | 435 | 2.25e-122 | 364 |
| Msa0668500 | AT1G50010.1 | 41.553 | 438 | 243 | 3 | 1 | 428 | 1 | 435 | 1.64e-121 | 362 |
| Msa0668500 | AT1G04820.1 | 41.553 | 438 | 243 | 3 | 1 | 428 | 1 | 435 | 1.64e-121 | 362 |
| Msa0668500 | AT4G14960.1 | 41.710 | 386 | 215 | 2 | 1 | 376 | 1 | 386 | 5.16e-104 | 316 |
| Msa0668500 | AT3G61650.1 | 34.848 | 462 | 282 | 8 | 2 | 447 | 3 | 461 | 4.39e-98 | 302 |
| Msa0668500 | AT5G05620.1 | 35.616 | 438 | 265 | 7 | 2 | 423 | 3 | 439 | 8.56e-98 | 301 |
Find 153 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTAAGGTTTGGCTAATTT+TGG | 0.091180 | 4_4:+9473442 | Msa0668500:three_prime_UTR |
| AAGAAGGTTGAAATGAAATT+TGG | 0.190671 | 4_4:-9470485 | None:intergenic |
| CTATGGTGTAAAATTGATTT+TGG | 0.190684 | 4_4:+9473205 | Msa0668500:three_prime_UTR |
| CACATTTGTTGGGTGAGTTC+AGG | 0.235616 | 4_4:-9472640 | None:intergenic |
| CACTCACTTGGTGGAGGAAC+TGG | 0.264774 | 4_4:+9472033 | Msa0668500:CDS |
| GAAGGCGAAGAGGAGGAGTA+TGG | 0.281412 | 4_4:+9473096 | Msa0668500:CDS |
| AAAGTAAGCATCATCCTATC+TGG | 0.292949 | 4_4:-9472102 | None:intergenic |
| TGGAATCCATTCCACAAAAT+AGG | 0.297243 | 4_4:-9472797 | None:intergenic |
| ACAGTAGACTTGACATTGTT+TGG | 0.300254 | 4_4:-9472817 | None:intergenic |
| AGAGTGGTGCTGGGAATAAC+TGG | 0.308905 | 4_4:+9470838 | Msa0668500:CDS |
| AAGCCATCTTCAACCCTGTT+GGG | 0.309642 | 4_4:-9472852 | None:intergenic |
| ACTGCTTCAGCCATGTTTAG+AGG | 0.311640 | 4_4:+9472715 | Msa0668500:CDS |
| TCTTTATATTTCAGTTACTA+TGG | 0.311928 | 4_4:+9473188 | Msa0668500:three_prime_UTR |
| ACCAAATCGGAGCTAAATTC+TGG | 0.323892 | 4_4:+9470598 | Msa0668500:CDS |
| AGAAGGTTGAAATGAAATTT+GGG | 0.333106 | 4_4:-9470484 | None:intergenic |
| GGATCTTGAACCGGGTACTA+TGG | 0.338256 | 4_4:+9470755 | Msa0668500:CDS |
| TGTTCCGAGAGCGGTTCTTA+TGG | 0.339518 | 4_4:+9470734 | Msa0668500:CDS |
| CCCAGAATTTAGCTCCGATT+TGG | 0.341410 | 4_4:-9470599 | None:intergenic |
| CAAAATTAGCCAAACCTTAG+AGG | 0.343276 | 4_4:-9473441 | None:intergenic |
| TGGGAACTCCACATCCATTC+AGG | 0.355961 | 4_4:+9472885 | Msa0668500:CDS |
| GTGTTTGGTCAGAGTGGTGC+TGG | 0.358408 | 4_4:+9470828 | Msa0668500:CDS |
| AAGATGGCTTCAACATTCAT+TGG | 0.366167 | 4_4:+9472865 | Msa0668500:CDS |
| TGAGAATTGTGATTGCTTGC+AGG | 0.369709 | 4_4:+9470929 | Msa0668500:CDS |
| GTCAGCTTAACTCCGATCTT+AGG | 0.382755 | 4_4:+9472512 | Msa0668500:CDS |
| TGAGAGTGTGAGAGAGGGTT+TGG | 0.389246 | 4_4:-9470434 | None:intergenic |
| CACTCAGAGTCCTGTACTGC+TGG | 0.393447 | 4_4:-9472615 | None:intergenic |
| AATAGGAGGAGTTCTTGTTC+TGG | 0.394999 | 4_4:-9472780 | None:intergenic |
| CTTGGTGGAGGAACTGGGTC+TGG | 0.396498 | 4_4:+9472039 | Msa0668500:CDS |
| CACTGCTATGTTCAGGAGAA+AGG | 0.402943 | 4_4:+9472936 | Msa0668500:CDS |
| AGCAGCACACATCATGTTCT+TGG | 0.404220 | 4_4:-9472668 | None:intergenic |
| AGACCGGATAACTTTGTGTT+TGG | 0.404999 | 4_4:+9470813 | Msa0668500:CDS |
| ACCTGTTGTTTGAGGTTCCC+TGG | 0.407604 | 4_4:+9472490 | Msa0668500:CDS |
| GGTTCTTATGGATCTTGAAC+CGG | 0.408619 | 4_4:+9470746 | Msa0668500:CDS |
| CTTGGCATCCCACATTTGTT+GGG | 0.409631 | 4_4:-9472650 | None:intergenic |
| GAAATGAAAATTTGTGAAGA+AGG | 0.419340 | 4_4:-9470501 | None:intergenic |
| GGTTGGATCGATTCCATGTT+CGG | 0.419355 | 4_4:-9470634 | None:intergenic |
| CATTTGTTCATCAACCTCCT+TGG | 0.421209 | 4_4:-9472749 | None:intergenic |
| CTCCGATTTGGTTACCGCAT+TGG | 0.424196 | 4_4:-9470587 | None:intergenic |
| TCTTGGCATCCCACATTTGT+TGG | 0.424338 | 4_4:-9472651 | None:intergenic |
| ACATTTGTTGGGTGAGTTCA+GGG | 0.428348 | 4_4:-9472639 | None:intergenic |
| CCTCATCAGCGGTGGCATCT+TGG | 0.436615 | 4_4:-9473056 | None:intergenic |
| TCCTGTACTGCTGGGAGCCA+CGG | 0.440119 | 4_4:-9472606 | None:intergenic |
| GAAGCCATCTTCAACCCTGT+TGG | 0.440559 | 4_4:-9472853 | None:intergenic |
| ACCGCTGATGAGGATGAGTA+TGG | 0.442177 | 4_4:+9473066 | Msa0668500:CDS |
| AACAGAGAGAGTAGCATTGT+AGG | 0.445421 | 4_4:-9472169 | None:intergenic |
| CTGATATCAGCAACTATGTC+TGG | 0.452611 | 4_4:+9472463 | Msa0668500:CDS |
| AGATGGCTTCAACATTCATT+GGG | 0.456278 | 4_4:+9472866 | Msa0668500:CDS |
| AGCAGTTCACTGCTATGTTC+AGG | 0.456361 | 4_4:+9472929 | Msa0668500:CDS |
| GGAGGAACTGGGTCTGGAAT+GGG | 0.456477 | 4_4:+9472045 | Msa0668500:CDS |
| CTGGTGTCACCTGTTGTTTG+AGG | 0.465900 | 4_4:+9472482 | Msa0668500:CDS |
| CTGGGAATAACTGGGCTAAA+GGG | 0.468422 | 4_4:+9470847 | Msa0668500:CDS |
| GGCCAATGCGGTAACCAAAT+CGG | 0.477508 | 4_4:+9470585 | Msa0668500:CDS |
| GGAGAAAGGCTTTCTTGCAT+TGG | 0.478824 | 4_4:+9472950 | Msa0668500:CDS |
| TGAATCACCGGTGTAGCGTC+CGG | 0.479982 | 4_4:-9470655 | None:intergenic |
| ACCAGGGAACCTCAAACAAC+AGG | 0.480075 | 4_4:-9472491 | None:intergenic |
| CCAAATCGGAGCTAAATTCT+GGG | 0.483293 | 4_4:+9470599 | Msa0668500:CDS |
| GCTGGGAATAACTGGGCTAA+AGG | 0.483743 | 4_4:+9470846 | Msa0668500:CDS |
| GATGAGTATGGAGAGGAAGA+AGG | 0.487117 | 4_4:+9473078 | Msa0668500:CDS |
| GTGAGGTATCGCCCATGCCT+AGG | 0.488888 | 4_4:-9472694 | None:intergenic |
| CCCGTGGCTCCCAGCAGTAC+AGG | 0.489965 | 4_4:+9472605 | Msa0668500:CDS |
| CGGAGCTAAATTCTGGGAAG+TGG | 0.492132 | 4_4:+9470605 | Msa0668500:CDS |
| CCTGTACTGCTGGGAGCCAC+GGG | 0.492205 | 4_4:-9472605 | None:intergenic |
| TTGATGTGACCTGTTGGTAG+TGG | 0.497914 | 4_4:+9473238 | Msa0668500:three_prime_UTR |
| ACTCACTTGGTGGAGGAACT+GGG | 0.505509 | 4_4:+9472034 | Msa0668500:CDS |
| GCTTTCTTGCATTGGTACAC+TGG | 0.506815 | 4_4:+9472958 | Msa0668500:CDS |
| AGAGGAAGAAGGCGAAGAGG+AGG | 0.507966 | 4_4:+9473089 | Msa0668500:CDS |
| TCAGGGAAGAATACCCAGAT+AGG | 0.508115 | 4_4:+9472088 | Msa0668500:CDS |
| TGGAGGAACTGGGTCTGGAA+TGG | 0.508835 | 4_4:+9472044 | Msa0668500:CDS |
| AAGGCGAAGAGGAGGAGTAT+GGG | 0.508897 | 4_4:+9473097 | Msa0668500:CDS |
| TGTGCTGCTGACCCTAGGCA+TGG | 0.509772 | 4_4:+9472682 | Msa0668500:CDS |
| TGTCTTTCTCCACTACCAAC+AGG | 0.510299 | 4_4:-9473247 | None:intergenic |
| AGATCGGAGTTAAGCTGACC+AGG | 0.515718 | 4_4:-9472508 | None:intergenic |
| CAAGTATGCCACTCACTTGG+TGG | 0.517337 | 4_4:+9472024 | Msa0668500:CDS |
| CACAGCAAGCTTCCTAAGAT+CGG | 0.523003 | 4_4:-9472524 | None:intergenic |
| CCTACGGAACATTTCCTGAA+TGG | 0.523804 | 4_4:-9472899 | None:intergenic |
| TTGCATTGGTACACTGGTGA+AGG | 0.524227 | 4_4:+9472964 | Msa0668500:CDS |
| TGACCAAACACAAAGTTATC+CGG | 0.525289 | 4_4:-9470816 | None:intergenic |
| TTTCAAGTATGCCACTCACT+TGG | 0.530375 | 4_4:+9472021 | Msa0668500:CDS |
| TGTGAGTGAGAGTGTGAGAG+AGG | 0.532542 | 4_4:-9470440 | None:intergenic |
| TGGAGAGGAAGAAGGCGAAG+AGG | 0.534068 | 4_4:+9473086 | Msa0668500:CDS |
| AGATAGCTAACGTACAGCTT+GGG | 0.535434 | 4_4:-9472281 | None:intergenic |
| CGGGTACTATGGATAGTATC+CGG | 0.537467 | 4_4:+9470766 | Msa0668500:CDS |
| AACTTTGTGTTTGGTCAGAG+TGG | 0.539264 | 4_4:+9470822 | Msa0668500:CDS |
| GAAGTGGTTTGCGCCGAACA+TGG | 0.540201 | 4_4:+9470621 | Msa0668500:CDS |
| ACTATGGATAGTATCCGGTC+TGG | 0.540371 | 4_4:+9470771 | Msa0668500:CDS |
| TGGGAGCCACGGGAGGTCAA+AGG | 0.543060 | 4_4:-9472595 | None:intergenic |
| GCTCATCTTGCCTCTAAACA+TGG | 0.543181 | 4_4:-9472725 | None:intergenic |
| ACAGAGAGAGTAGCATTGTA+GGG | 0.545950 | 4_4:-9472168 | None:intergenic |
| GAACATTTCCTGAATGGATG+TGG | 0.547117 | 4_4:-9472893 | None:intergenic |
| CTGAACTCACCCAACAAATG+TGG | 0.549868 | 4_4:+9472641 | Msa0668500:CDS |
| TCCTAAGGTTTCTGACACTG+TGG | 0.549921 | 4_4:+9472140 | Msa0668500:CDS |
| AGCCATCTTCAACCCTGTTG+GGG | 0.549987 | 4_4:-9472851 | None:intergenic |
| CCAAGATGCCACCGCTGATG+AGG | 0.550130 | 4_4:+9473056 | Msa0668500:CDS |
| ATTCAGATCTTCAACTTGAA+CGG | 0.550491 | 4_4:+9470673 | Msa0668500:CDS |
| GTGTCAGAAACCTTAGGAGA+AGG | 0.550838 | 4_4:-9472135 | None:intergenic |
| AGTATCCGGTCTGGACCGTA+TGG | 0.551849 | 4_4:+9470780 | Msa0668500:CDS |
| TGAGAGCAACATGAATGATC+TGG | 0.551963 | 4_4:+9473014 | Msa0668500:CDS |
| GAACATGGAATCGATCCAAC+CGG | 0.551983 | 4_4:+9470636 | Msa0668500:CDS |
| GTTCTTATGGATCTTGAACC+GGG | 0.556874 | 4_4:+9470747 | Msa0668500:CDS |
| GGTTACCGCATTGGCCACCT+TGG | 0.557526 | 4_4:-9470578 | None:intergenic |
| TGAGGTATCGCCCATGCCTA+GGG | 0.558978 | 4_4:-9472693 | None:intergenic |
| TGGTGAAGGCATGGACGAGA+TGG | 0.560351 | 4_4:+9472978 | Msa0668500:CDS |
| TGATGTGTGCTGCTGACCCT+AGG | 0.561458 | 4_4:+9472677 | Msa0668500:CDS |
| GAGAATTGTGATTGCTTGCA+GGG | 0.561746 | 4_4:+9470930 | Msa0668500:CDS |
| CCATTCAGGAAATGTTCCGT+AGG | 0.563699 | 4_4:+9472899 | Msa0668500:CDS |
| TGTTTGGTCAGAGTGGTGCT+GGG | 0.566395 | 4_4:+9470829 | Msa0668500:CDS |
| AAGTAAGCATCATCCTATCT+GGG | 0.568440 | 4_4:-9472101 | None:intergenic |
| TGAAAACGCAGACGAGGTCA+TGG | 0.568870 | 4_4:+9472203 | Msa0668500:CDS |
| GTACTGCTGGGAGCCACGGG+AGG | 0.573841 | 4_4:-9472602 | None:intergenic |
| TCACCGGTGTAGCGTCCGGT+TGG | 0.574212 | 4_4:-9470651 | None:intergenic |
| GTGAGTGAGAGTGTGAGAGA+GGG | 0.577741 | 4_4:-9470439 | None:intergenic |
| ATCGTAGAATTTATCAACTG+TGG | 0.580461 | 4_4:+9473333 | Msa0668500:three_prime_UTR |
| AGATCCATAAGAACCGCTCT+CGG | 0.582689 | 4_4:-9470738 | None:intergenic |
| CGTCAAATTCTTCACATCCA+AGG | 0.585397 | 4_4:+9470561 | Msa0668500:CDS |
| ACCACAGTGTCAGAAACCTT+AGG | 0.586612 | 4_4:-9472141 | None:intergenic |
| TGGAAGATTTGTTCCGAGAG+CGG | 0.586683 | 4_4:+9470725 | Msa0668500:CDS |
| TTTGCACCTTTGACCTCCCG+TGG | 0.597994 | 4_4:+9472589 | Msa0668500:CDS |
| TGTCAGAAACCTTAGGAGAA+GGG | 0.599265 | 4_4:-9472134 | None:intergenic |
| AAGTTGAAGATCTGAATCAC+CGG | 0.607154 | 4_4:-9470667 | None:intergenic |
| GGTTGCTGAGCTTCAAAATG+CGG | 0.608746 | 4_4:-9472260 | None:intergenic |
| TGAACTCACCCAACAAATGT+GGG | 0.610282 | 4_4:+9472642 | Msa0668500:CDS |
| TTGGTACACTGGTGAAGGCA+TGG | 0.610557 | 4_4:+9472969 | Msa0668500:CDS |
| TGAACTGCTCACTCACCCTA+CGG | 0.610579 | 4_4:-9472915 | None:intergenic |
| AATCCATTCCACAAAATAGG+AGG | 0.611691 | 4_4:-9472794 | None:intergenic |
| TCTGACCATACGGTCCAGAC+CGG | 0.612759 | 4_4:-9470785 | None:intergenic |
| CATTCAGGAAATGTTCCGTA+GGG | 0.612874 | 4_4:+9472900 | Msa0668500:CDS |
| ACTCAGAGTCCTGTACTGCT+GGG | 0.613311 | 4_4:-9472614 | None:intergenic |
| GCCATCTTCAACCCTGTTGG+GGG | 0.615871 | 4_4:-9472850 | None:intergenic |
| GATCCAACCGGACGCTACAC+CGG | 0.618066 | 4_4:+9470648 | Msa0668500:CDS |
| GTATGGTCAGATCTTTAGAC+CGG | 0.619894 | 4_4:+9470797 | Msa0668500:CDS |
| GGTCTAAAGATCTGACCATA+CGG | 0.621130 | 4_4:-9470795 | None:intergenic |
| GAGTGGTGCTGGGAATAACT+GGG | 0.622575 | 4_4:+9470839 | Msa0668500:CDS |
| CACATCCAAGGTGGCCAATG+CGG | 0.624440 | 4_4:+9470573 | Msa0668500:CDS |
| GTGCTGCTGACCCTAGGCAT+GGG | 0.624521 | 4_4:+9472683 | Msa0668500:CDS |
| CAGTTCCTCCACCAAGTGAG+TGG | 0.625629 | 4_4:-9472032 | None:intergenic |
| GCTAAAGGGCATTATACTGA+AGG | 0.627222 | 4_4:+9470861 | Msa0668500:CDS |
| CGGATACTATCCATAGTACC+CGG | 0.627540 | 4_4:-9470765 | None:intergenic |
| GTATGCCACTCACTTGGTGG+AGG | 0.629569 | 4_4:+9472027 | Msa0668500:CDS |
| GCGGAAGCAGATGTCATACA+AGG | 0.632368 | 4_4:-9472241 | None:intergenic |
| TCCATACTCATCCTCATCAG+CGG | 0.637103 | 4_4:-9473067 | None:intergenic |
| CCATCTTCAACCCTGTTGGG+GGG | 0.650617 | 4_4:-9472849 | None:intergenic |
| ATACTCATCCTCATCAGCGG+TGG | 0.651736 | 4_4:-9473064 | None:intergenic |
| TATTACAATGAAGCAAGTGG+TGG | 0.660724 | 4_4:+9470705 | Msa0668500:CDS |
| ACAGTTGATAAATTCTACGA+TGG | 0.663576 | 4_4:-9473331 | None:intergenic |
| GCTTGTTGAAAACGCAGACG+AGG | 0.664624 | 4_4:+9472197 | Msa0668500:CDS |
| TGATGAGGATGAGTATGGAG+AGG | 0.668397 | 4_4:+9473071 | Msa0668500:CDS |
| TAGAGGCAAGATGAGCACCA+AGG | 0.693808 | 4_4:+9472732 | Msa0668500:CDS |
| GATCGGAGTTAAGCTGACCA+GGG | 0.698719 | 4_4:-9472507 | None:intergenic |
| CAAATTCTTCACATCCAAGG+TGG | 0.706919 | 4_4:+9470564 | Msa0668500:CDS |
| TAAACATGGCTGAAGCAGTG+AGG | 0.710604 | 4_4:-9472711 | None:intergenic |
| AGGCAAGATGAGCACCAAGG+AGG | 0.712769 | 4_4:+9472735 | Msa0668500:CDS |
| GTGTATTACAATGAAGCAAG+TGG | 0.718256 | 4_4:+9470702 | Msa0668500:CDS |
| GGACGAGATGGAATTCACTG+AGG | 0.754042 | 4_4:+9472990 | Msa0668500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACTTGTTTTGAAATTTA+CGG | + | chr4_4:9471068-9471087 | Msa0668500:intron | 15.0% |
| !! | TAGATTAGTATTAACAAAAA+AGG | - | chr4_4:9472371-9472390 | None:intergenic | 15.0% |
| !!! | TGTTAATACTAATCTATTTT+TGG | + | chr4_4:9472375-9472394 | Msa0668500:intron | 15.0% |
| !!! | TTTTGAACTTTTGTGATTTT+AGG | + | chr4_4:9470967-9470986 | Msa0668500:intron | 20.0% |
| !!! | TTTGAACTTTTGTGATTTTA+GGG | + | chr4_4:9470968-9470987 | Msa0668500:intron | 20.0% |
| !!! | TTCTGATTTGTTTTGAAATT+TGG | + | chr4_4:9471494-9471513 | Msa0668500:intron | 20.0% |
| !!! | TCTGATTTGTTTTGAAATTT+GGG | + | chr4_4:9471495-9471514 | Msa0668500:intron | 20.0% |
| !!! | ATTTAACTTGTTTGAAATTC+AGG | + | chr4_4:9471703-9471722 | Msa0668500:intron | 20.0% |
| !!! | TTTAACTTGTTTGAAATTCA+GGG | + | chr4_4:9471704-9471723 | Msa0668500:intron | 20.0% |
| !! | TCTTTATATTTCAGTTACTA+TGG | + | chr4_4:9473188-9473207 | Msa0668500:three_prime_UTR | 20.0% |
| !!! | TTGGTTTTTATAGAGGAAAT+GGG | - | chr4_4:9470418-9470437 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTTATAGAGGAAA+TGG | - | chr4_4:9470419-9470438 | None:intergenic | 25.0% |
| ! | AGAAGGTTGAAATGAAATTT+GGG | - | chr4_4:9470487-9470506 | None:intergenic | 25.0% |
| ! | AAGAAGGTTGAAATGAAATT+TGG | - | chr4_4:9470488-9470507 | None:intergenic | 25.0% |
| ! | GAAATGAAAATTTGTGAAGA+AGG | - | chr4_4:9470504-9470523 | None:intergenic | 25.0% |
| !! | CTTCACAAATTTTCATTTCT+AGG | + | chr4_4:9470505-9470524 | Msa0668500:five_prime_UTR | 25.0% |
| !!! | ATTTGACGCATTTTGAAAAA+GGG | - | chr4_4:9470549-9470568 | None:intergenic | 25.0% |
| !!! | AATTTGACGCATTTTGAAAA+AGG | - | chr4_4:9470550-9470569 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTTAGAGTTTTGT+TGG | + | chr4_4:9471152-9471171 | Msa0668500:intron | 25.0% |
| !!! | TTTGTTGGTGATTTTTGTAA+TGG | + | chr4_4:9471167-9471186 | Msa0668500:intron | 25.0% |
| !!! | TTGTTGGTGATTTTTGTAAT+GGG | + | chr4_4:9471168-9471187 | Msa0668500:intron | 25.0% |
| !!! | TGATTTTTGTAATGGGTATA+TGG | + | chr4_4:9471175-9471194 | Msa0668500:intron | 25.0% |
| !!! | TGTTGATTTTGTTGGATTTA+TGG | + | chr4_4:9471211-9471230 | Msa0668500:intron | 25.0% |
| !!! | GTTTTTTCAATGAGATTTGT+TGG | + | chr4_4:9471285-9471304 | Msa0668500:intron | 25.0% |
| !!! | TCTAACTTGTTTTGAAATTC+AGG | + | chr4_4:9471339-9471358 | Msa0668500:intron | 25.0% |
| !!! | CTAACTTGTTTTGAAATTCA+GGG | + | chr4_4:9471340-9471359 | Msa0668500:intron | 25.0% |
| !!! | TGTTGTTCATAAAGTTTTGT+GGG | + | chr4_4:9471440-9471459 | Msa0668500:intron | 25.0% |
| !!! | CTGATTTGTTTTGAAATTTG+GGG | + | chr4_4:9471496-9471515 | Msa0668500:intron | 25.0% |
| !!! | CAACTGCAATTTATTTTTGA+AGG | - | chr4_4:9471592-9471611 | None:intergenic | 25.0% |
| !!! | ATGTGTTTTTATACAGTTGT+GGG | + | chr4_4:9471620-9471639 | Msa0668500:intron | 25.0% |
| !!! | TCTTTTGATTTCAAAGATCA+GGG | + | chr4_4:9472071-9472090 | Msa0668500:CDS | 25.0% |
| ! | CAAAAAAGGTCAATATAGAA+AGG | - | chr4_4:9472357-9472376 | None:intergenic | 25.0% |
| !! | AGTAATGTGTTTGATTTATG+TGG | + | chr4_4:9472415-9472434 | Msa0668500:intron | 25.0% |
| !! | TGACATGTAATTTTGAATGA+AGG | + | chr4_4:9473125-9473144 | Msa0668500:exon | 25.0% |
| !!! | CTATGGTGTAAAATTGATTT+TGG | + | chr4_4:9473205-9473224 | Msa0668500:three_prime_UTR | 25.0% |
| ! | TGGTTTTTATAGAGGAAATG+GGG | - | chr4_4:9470417-9470436 | None:intergenic | 30.0% |
| !! | AATTTGGGTTTTCGTTTCTA+GGG | - | chr4_4:9470472-9470491 | None:intergenic | 30.0% |
| !! | AAATTTGGGTTTTCGTTTCT+AGG | - | chr4_4:9470473-9470492 | None:intergenic | 30.0% |
| ATTCAGATCTTCAACTTGAA+CGG | + | chr4_4:9470673-9470692 | Msa0668500:CDS | 30.0% | |
| !! | GTGTTTTTGTAGTGTTTTGT+CGG | + | chr4_4:9471009-9471028 | Msa0668500:intron | 30.0% |
| !! | CATTGATTAAGAAGTGTTGA+TGG | + | chr4_4:9471094-9471113 | Msa0668500:intron | 30.0% |
| !!! | TAGGGTTTTGTTGATTTTGT+TGG | + | chr4_4:9471203-9471222 | Msa0668500:intron | 30.0% |
| TGTTGGATTTATGGATTTGT+TGG | + | chr4_4:9471220-9471239 | Msa0668500:intron | 30.0% | |
| !! | ATTTGTTGGTGATTTAGTGA+TGG | + | chr4_4:9471299-9471318 | Msa0668500:intron | 30.0% |
| !! | TTTGTTGGTGATTTAGTGAT+GGG | + | chr4_4:9471300-9471319 | Msa0668500:intron | 30.0% |
| AACACATCAAAACTTCAACT+AGG | - | chr4_4:9471424-9471443 | None:intergenic | 30.0% | |
| !! | GTGTTGTTCATAAAGTTTTG+TGG | + | chr4_4:9471439-9471458 | Msa0668500:intron | 30.0% |
| ! | TTTGTGGGTGATTTTTGTAA+TGG | + | chr4_4:9471455-9471474 | Msa0668500:intron | 30.0% |
| ! | TTGTGGGTGATTTTTGTAAT+GGG | + | chr4_4:9471456-9471475 | Msa0668500:intron | 30.0% |
| !! | GATGTGTTTTTATACAGTTG+TGG | + | chr4_4:9471619-9471638 | Msa0668500:intron | 30.0% |
| ! | TTATGTCTTGTTGCTGTTAT+TGG | + | chr4_4:9471844-9471863 | Msa0668500:intron | 30.0% |
| !! | ACTTCCTTGTCTTTGAAATT+TGG | + | chr4_4:9471906-9471925 | Msa0668500:intron | 30.0% |
| AACAAACATTATGATCCCTT+AGG | - | chr4_4:9471932-9471951 | None:intergenic | 30.0% | |
| !!! | GCTTTTTTATGTAAGTGTTG+TGG | + | chr4_4:9471953-9471972 | Msa0668500:intron | 30.0% |
| !!! | CTCTTTTGATTTCAAAGATC+AGG | + | chr4_4:9472070-9472089 | Msa0668500:CDS | 30.0% |
| !!! | TAAGCATCACTTTTTGTTGT+TGG | + | chr4_4:9473286-9473305 | Msa0668500:three_prime_UTR | 30.0% |
| !! | ACAGTTGATAAATTCTACGA+TGG | - | chr4_4:9473334-9473353 | None:intergenic | 30.0% |
| ATCGTAGAATTTATCAACTG+TGG | + | chr4_4:9473333-9473352 | Msa0668500:three_prime_UTR | 30.0% | |
| !!! | AGAGGGTTTGGTTTTTATAG+AGG | - | chr4_4:9470425-9470444 | None:intergenic | 35.0% |
| AAGTTGAAGATCTGAATCAC+CGG | - | chr4_4:9470670-9470689 | None:intergenic | 35.0% | |
| GTGTATTACAATGAAGCAAG+TGG | + | chr4_4:9470702-9470721 | Msa0668500:CDS | 35.0% | |
| TATTACAATGAAGCAAGTGG+TGG | + | chr4_4:9470705-9470724 | Msa0668500:CDS | 35.0% | |
| TGACCAAACACAAAGTTATC+CGG | - | chr4_4:9470819-9470838 | None:intergenic | 35.0% | |
| ! | TTTTTGTAGTGTTTTGTCGG+TGG | + | chr4_4:9471012-9471031 | Msa0668500:intron | 35.0% |
| ! | TTTGTCGGTGGTTTTTGTAA+TGG | + | chr4_4:9471024-9471043 | Msa0668500:intron | 35.0% |
| ! | TTGTCGGTGGTTTTTGTAAT+GGG | + | chr4_4:9471025-9471044 | Msa0668500:intron | 35.0% |
| ! | TAATGGGTATATGGTCGTTT+AGG | + | chr4_4:9471184-9471203 | Msa0668500:intron | 35.0% |
| AATGGGTATATGGTCGTTTA+GGG | + | chr4_4:9471185-9471204 | Msa0668500:intron | 35.0% | |
| ! | TGTTTGAAGTGATGAAGTTG+TGG | + | chr4_4:9471247-9471266 | Msa0668500:intron | 35.0% |
| ! | TTTGAAATTCAGGGTTGTGT+TGG | + | chr4_4:9471349-9471368 | Msa0668500:intron | 35.0% |
| !! | TTGTTGATTCAACGTGTTGA+TGG | + | chr4_4:9471521-9471540 | Msa0668500:intron | 35.0% |
| TTGTGGGTGATTCTTGTAAT+GGG | + | chr4_4:9471636-9471655 | Msa0668500:intron | 35.0% | |
| !! | AAGTGCTGATAGATTTGTCA+GGG | + | chr4_4:9471741-9471760 | Msa0668500:intron | 35.0% |
| ! | TAGATTTGTCAGGGTTTGTT+TGG | + | chr4_4:9471750-9471769 | Msa0668500:intron | 35.0% |
| TGTAGTTGTAAGTTTCTGTG+TGG | + | chr4_4:9471795-9471814 | Msa0668500:intron | 35.0% | |
| ! | AAGTTTCTGTGTGGTTTTCT+AGG | + | chr4_4:9471804-9471823 | Msa0668500:intron | 35.0% |
| ! | AGTTTCTGTGTGGTTTTCTA+GGG | + | chr4_4:9471805-9471824 | Msa0668500:intron | 35.0% |
| TAGGCCAAATTTCAAAGACA+AGG | - | chr4_4:9471913-9471932 | None:intergenic | 35.0% | |
| !! | TGTCTTTGAAATTTGGCCTA+AGG | + | chr4_4:9471913-9471932 | Msa0668500:intron | 35.0% |
| !! | GTCTTTGAAATTTGGCCTAA+GGG | + | chr4_4:9471914-9471933 | Msa0668500:intron | 35.0% |
| GTTGTGGCTGATTATGAAAT+TGG | + | chr4_4:9471969-9471988 | Msa0668500:intron | 35.0% | |
| GGCTGATTATGAAATTGGTT+TGG | + | chr4_4:9471974-9471993 | Msa0668500:intron | 35.0% | |
| !! | TGTGTTTTATTGTTGTGTGC+AGG | + | chr4_4:9471997-9472016 | Msa0668500:intron | 35.0% |
| AAGTAAGCATCATCCTATCT+GGG | - | chr4_4:9472104-9472123 | None:intergenic | 35.0% | |
| AAAGTAAGCATCATCCTATC+TGG | - | chr4_4:9472105-9472124 | None:intergenic | 35.0% | |
| AATCCATTCCACAAAATAGG+AGG | - | chr4_4:9472797-9472816 | None:intergenic | 35.0% | |
| TGGAATCCATTCCACAAAAT+AGG | - | chr4_4:9472800-9472819 | None:intergenic | 35.0% | |
| ACAGTAGACTTGACATTGTT+TGG | - | chr4_4:9472820-9472839 | None:intergenic | 35.0% | |
| AAGATGGCTTCAACATTCAT+TGG | + | chr4_4:9472865-9472884 | Msa0668500:CDS | 35.0% | |
| AGATGGCTTCAACATTCATT+GGG | + | chr4_4:9472866-9472885 | Msa0668500:CDS | 35.0% | |
| !!! | TTTGTTTTGATGTGACCTGT+TGG | + | chr4_4:9473232-9473251 | Msa0668500:three_prime_UTR | 35.0% |
| ! | GTCTTTGATCTTTTCCTCTA+AGG | + | chr4_4:9473427-9473446 | Msa0668500:three_prime_UTR | 35.0% |
| !!! | TGATCTTTTCCTCTAAGGTT+TGG | + | chr4_4:9473432-9473451 | Msa0668500:three_prime_UTR | 35.0% |
| CAAAATTAGCCAAACCTTAG+AGG | - | chr4_4:9473444-9473463 | None:intergenic | 35.0% | |
| CGTCAAATTCTTCACATCCA+AGG | + | chr4_4:9470561-9470580 | Msa0668500:CDS | 40.0% | |
| CAAATTCTTCACATCCAAGG+TGG | + | chr4_4:9470564-9470583 | Msa0668500:CDS | 40.0% | |
| ACCAAATCGGAGCTAAATTC+TGG | + | chr4_4:9470598-9470617 | Msa0668500:CDS | 40.0% | |
| CCAAATCGGAGCTAAATTCT+GGG | + | chr4_4:9470599-9470618 | Msa0668500:CDS | 40.0% | |
| GGTTCTTATGGATCTTGAAC+CGG | + | chr4_4:9470746-9470765 | Msa0668500:CDS | 40.0% | |
| GTTCTTATGGATCTTGAACC+GGG | + | chr4_4:9470747-9470766 | Msa0668500:CDS | 40.0% | |
| GGTCTAAAGATCTGACCATA+CGG | - | chr4_4:9470798-9470817 | None:intergenic | 40.0% | |
| GTATGGTCAGATCTTTAGAC+CGG | + | chr4_4:9470797-9470816 | Msa0668500:CDS | 40.0% | |
| AGACCGGATAACTTTGTGTT+TGG | + | chr4_4:9470813-9470832 | Msa0668500:CDS | 40.0% | |
| AACTTTGTGTTTGGTCAGAG+TGG | + | chr4_4:9470822-9470841 | Msa0668500:CDS | 40.0% | |
| !! | GCTAAAGGGCATTATACTGA+AGG | + | chr4_4:9470861-9470880 | Msa0668500:CDS | 40.0% |
| TGAGAATTGTGATTGCTTGC+AGG | + | chr4_4:9470929-9470948 | Msa0668500:CDS | 40.0% | |
| GAGAATTGTGATTGCTTGCA+GGG | + | chr4_4:9470930-9470949 | Msa0668500:CDS | 40.0% | |
| CACTTCAACTACAGCTTCAT+TGG | - | chr4_4:9471568-9471587 | None:intergenic | 40.0% | |
| GTTGTGGGTGATTCTTGTAA+TGG | + | chr4_4:9471635-9471654 | Msa0668500:intron | 40.0% | |
| TAAGCTCTGTTATTGCTTGC+AGG | + | chr4_4:9471670-9471689 | Msa0668500:intron | 40.0% | |
| AAGCTCTGTTATTGCTTGCA+GGG | + | chr4_4:9471671-9471690 | Msa0668500:intron | 40.0% | |
| !! | GAAGTGCTGATAGATTTGTC+AGG | + | chr4_4:9471740-9471759 | Msa0668500:intron | 40.0% |
| ! | TTTCAAGTATGCCACTCACT+TGG | + | chr4_4:9472021-9472040 | Msa0668500:CDS | 40.0% |
| TGTCAGAAACCTTAGGAGAA+GGG | - | chr4_4:9472137-9472156 | None:intergenic | 40.0% | |
| ACAGAGAGAGTAGCATTGTA+GGG | - | chr4_4:9472171-9472190 | None:intergenic | 40.0% | |
| AACAGAGAGAGTAGCATTGT+AGG | - | chr4_4:9472172-9472191 | None:intergenic | 40.0% | |
| AGATAGCTAACGTACAGCTT+GGG | - | chr4_4:9472284-9472303 | None:intergenic | 40.0% | |
| TAGATAGCTAACGTACAGCT+TGG | - | chr4_4:9472285-9472304 | None:intergenic | 40.0% | |
| GATTTATGTGGTTGTGCAGT+TGG | + | chr4_4:9472427-9472446 | Msa0668500:intron | 40.0% | |
| CTGATATCAGCAACTATGTC+TGG | + | chr4_4:9472463-9472482 | Msa0668500:CDS | 40.0% | |
| ACCATGAAAAAGTGAAGACG+CGG | - | chr4_4:9472565-9472584 | None:intergenic | 40.0% | |
| !!! | CGTCTTCACTTTTTCATGGT+GGG | + | chr4_4:9472565-9472584 | Msa0668500:CDS | 40.0% |
| ! | ACATTTGTTGGGTGAGTTCA+GGG | - | chr4_4:9472642-9472661 | None:intergenic | 40.0% |
| TGAACTCACCCAACAAATGT+GGG | + | chr4_4:9472642-9472661 | Msa0668500:CDS | 40.0% | |
| CATTTGTTCATCAACCTCCT+TGG | - | chr4_4:9472752-9472771 | None:intergenic | 40.0% | |
| AATAGGAGGAGTTCTTGTTC+TGG | - | chr4_4:9472783-9472802 | None:intergenic | 40.0% | |
| ! | CAAGAACTCCTCCTATTTTG+TGG | + | chr4_4:9472786-9472805 | Msa0668500:CDS | 40.0% |
| ! | ACTCCTCCTATTTTGTGGAA+TGG | + | chr4_4:9472791-9472810 | Msa0668500:CDS | 40.0% |
| GAACATTTCCTGAATGGATG+TGG | - | chr4_4:9472896-9472915 | None:intergenic | 40.0% | |
| CATTCAGGAAATGTTCCGTA+GGG | + | chr4_4:9472900-9472919 | Msa0668500:CDS | 40.0% | |
| TGAGAGCAACATGAATGATC+TGG | + | chr4_4:9473014-9473033 | Msa0668500:CDS | 40.0% | |
| ! | CCCAGAATTTAGCTCCGATT+TGG | - | chr4_4:9470602-9470621 | None:intergenic | 45.0% |
| ! | GGTTGGATCGATTCCATGTT+CGG | - | chr4_4:9470637-9470656 | None:intergenic | 45.0% |
| GAACATGGAATCGATCCAAC+CGG | + | chr4_4:9470636-9470655 | Msa0668500:CDS | 45.0% | |
| ! | TGGAAGATTTGTTCCGAGAG+CGG | + | chr4_4:9470725-9470744 | Msa0668500:CDS | 45.0% |
| AGATCCATAAGAACCGCTCT+CGG | - | chr4_4:9470741-9470760 | None:intergenic | 45.0% | |
| CGGATACTATCCATAGTACC+CGG | - | chr4_4:9470768-9470787 | None:intergenic | 45.0% | |
| CGGGTACTATGGATAGTATC+CGG | + | chr4_4:9470766-9470785 | Msa0668500:CDS | 45.0% | |
| ACTATGGATAGTATCCGGTC+TGG | + | chr4_4:9470771-9470790 | Msa0668500:CDS | 45.0% | |
| CTGGGAATAACTGGGCTAAA+GGG | + | chr4_4:9470847-9470866 | Msa0668500:CDS | 45.0% | |
| CTGTTATTGCTTGCAGGGTA+TGG | + | chr4_4:9471676-9471695 | Msa0668500:intron | 45.0% | |
| TCAGGGAAGAATACCCAGAT+AGG | + | chr4_4:9472088-9472107 | Msa0668500:CDS | 45.0% | |
| ! | CTCTGTTTTCCCTTCTCCTA+AGG | + | chr4_4:9472125-9472144 | Msa0668500:CDS | 45.0% |
| GTGTCAGAAACCTTAGGAGA+AGG | - | chr4_4:9472138-9472157 | None:intergenic | 45.0% | |
| TCCTAAGGTTTCTGACACTG+TGG | + | chr4_4:9472140-9472159 | Msa0668500:CDS | 45.0% | |
| ACCACAGTGTCAGAAACCTT+AGG | - | chr4_4:9472144-9472163 | None:intergenic | 45.0% | |
| GGTTGCTGAGCTTCAAAATG+CGG | - | chr4_4:9472263-9472282 | None:intergenic | 45.0% | |
| GTCAGCTTAACTCCGATCTT+AGG | + | chr4_4:9472512-9472531 | Msa0668500:CDS | 45.0% | |
| CACAGCAAGCTTCCTAAGAT+CGG | - | chr4_4:9472527-9472546 | None:intergenic | 45.0% | |
| AAAAAGTGAAGACGCGGGAA+TGG | - | chr4_4:9472559-9472578 | None:intergenic | 45.0% | |
| CCATGAAAAAGTGAAGACGC+GGG | - | chr4_4:9472564-9472583 | None:intergenic | 45.0% | |
| !!! | GCGTCTTCACTTTTTCATGG+TGG | + | chr4_4:9472564-9472583 | Msa0668500:CDS | 45.0% |
| ! | CACATTTGTTGGGTGAGTTC+AGG | - | chr4_4:9472643-9472662 | None:intergenic | 45.0% |
| CTGAACTCACCCAACAAATG+TGG | + | chr4_4:9472641-9472660 | Msa0668500:CDS | 45.0% | |
| CTTGGCATCCCACATTTGTT+GGG | - | chr4_4:9472653-9472672 | None:intergenic | 45.0% | |
| TCTTGGCATCCCACATTTGT+TGG | - | chr4_4:9472654-9472673 | None:intergenic | 45.0% | |
| AGCAGCACACATCATGTTCT+TGG | - | chr4_4:9472671-9472690 | None:intergenic | 45.0% | |
| TAAACATGGCTGAAGCAGTG+AGG | - | chr4_4:9472714-9472733 | None:intergenic | 45.0% | |
| ACTGCTTCAGCCATGTTTAG+AGG | + | chr4_4:9472715-9472734 | Msa0668500:CDS | 45.0% | |
| GCTCATCTTGCCTCTAAACA+TGG | - | chr4_4:9472728-9472747 | None:intergenic | 45.0% | |
| AAGCCATCTTCAACCCTGTT+GGG | - | chr4_4:9472855-9472874 | None:intergenic | 45.0% | |
| CCTACGGAACATTTCCTGAA+TGG | - | chr4_4:9472902-9472921 | None:intergenic | 45.0% | |
| CCATTCAGGAAATGTTCCGT+AGG | + | chr4_4:9472899-9472918 | Msa0668500:CDS | 45.0% | |
| AGCAGTTCACTGCTATGTTC+AGG | + | chr4_4:9472929-9472948 | Msa0668500:CDS | 45.0% | |
| CACTGCTATGTTCAGGAGAA+AGG | + | chr4_4:9472936-9472955 | Msa0668500:CDS | 45.0% | |
| GGAGAAAGGCTTTCTTGCAT+TGG | + | chr4_4:9472950-9472969 | Msa0668500:CDS | 45.0% | |
| ! | GCTTTCTTGCATTGGTACAC+TGG | + | chr4_4:9472958-9472977 | Msa0668500:CDS | 45.0% |
| ! | TTGCATTGGTACACTGGTGA+AGG | + | chr4_4:9472964-9472983 | Msa0668500:CDS | 45.0% |
| TCCATACTCATCCTCATCAG+CGG | - | chr4_4:9473070-9473089 | None:intergenic | 45.0% | |
| TGATGAGGATGAGTATGGAG+AGG | + | chr4_4:9473071-9473090 | Msa0668500:CDS | 45.0% | |
| GATGAGTATGGAGAGGAAGA+AGG | + | chr4_4:9473078-9473097 | Msa0668500:CDS | 45.0% | |
| ! | TTGATGTGACCTGTTGGTAG+TGG | + | chr4_4:9473238-9473257 | Msa0668500:three_prime_UTR | 45.0% |
| TGTCTTTCTCCACTACCAAC+AGG | - | chr4_4:9473250-9473269 | None:intergenic | 45.0% | |
| ! | TGAGAGTGTGAGAGAGGGTT+TGG | - | chr4_4:9470437-9470456 | None:intergenic | 50.0% |
| ! | GTGAGTGAGAGTGTGAGAGA+GGG | - | chr4_4:9470442-9470461 | None:intergenic | 50.0% |
| ! | TGTGAGTGAGAGTGTGAGAG+AGG | - | chr4_4:9470443-9470462 | None:intergenic | 50.0% |
| GGCCAATGCGGTAACCAAAT+CGG | + | chr4_4:9470585-9470604 | Msa0668500:CDS | 50.0% | |
| !! | CTCCGATTTGGTTACCGCAT+TGG | - | chr4_4:9470590-9470609 | None:intergenic | 50.0% |
| ! | CGGAGCTAAATTCTGGGAAG+TGG | + | chr4_4:9470605-9470624 | Msa0668500:CDS | 50.0% |
| TGTTCCGAGAGCGGTTCTTA+TGG | + | chr4_4:9470734-9470753 | Msa0668500:CDS | 50.0% | |
| GGATCTTGAACCGGGTACTA+TGG | + | chr4_4:9470755-9470774 | Msa0668500:CDS | 50.0% | |
| TGTTTGGTCAGAGTGGTGCT+GGG | + | chr4_4:9470829-9470848 | Msa0668500:CDS | 50.0% | |
| ! | AGAGTGGTGCTGGGAATAAC+TGG | + | chr4_4:9470838-9470857 | Msa0668500:CDS | 50.0% |
| ! | GAGTGGTGCTGGGAATAACT+GGG | + | chr4_4:9470839-9470858 | Msa0668500:CDS | 50.0% |
| GCTGGGAATAACTGGGCTAA+AGG | + | chr4_4:9470846-9470865 | Msa0668500:CDS | 50.0% | |
| CAAGTATGCCACTCACTTGG+TGG | + | chr4_4:9472024-9472043 | Msa0668500:CDS | 50.0% | |
| ! | ACTCACTTGGTGGAGGAACT+GGG | + | chr4_4:9472034-9472053 | Msa0668500:CDS | 50.0% |
| ! | CGTCTGCGTTTTCAACAAGC+TGG | - | chr4_4:9472197-9472216 | None:intergenic | 50.0% |
| ! | GCTTGTTGAAAACGCAGACG+AGG | + | chr4_4:9472197-9472216 | Msa0668500:CDS | 50.0% |
| TGAAAACGCAGACGAGGTCA+TGG | + | chr4_4:9472203-9472222 | Msa0668500:CDS | 50.0% | |
| GCGGAAGCAGATGTCATACA+AGG | - | chr4_4:9472244-9472263 | None:intergenic | 50.0% | |
| !! | CTGGTGTCACCTGTTGTTTG+AGG | + | chr4_4:9472482-9472501 | Msa0668500:CDS | 50.0% |
| ! | ACCTGTTGTTTGAGGTTCCC+TGG | + | chr4_4:9472490-9472509 | Msa0668500:CDS | 50.0% |
| ACCAGGGAACCTCAAACAAC+AGG | - | chr4_4:9472494-9472513 | None:intergenic | 50.0% | |
| GATCGGAGTTAAGCTGACCA+GGG | - | chr4_4:9472510-9472529 | None:intergenic | 50.0% | |
| AGATCGGAGTTAAGCTGACC+AGG | - | chr4_4:9472511-9472530 | None:intergenic | 50.0% | |
| !!! | CCCGCGTCTTCACTTTTTCA+TGG | + | chr4_4:9472561-9472580 | Msa0668500:CDS | 50.0% |
| ACTCAGAGTCCTGTACTGCT+GGG | - | chr4_4:9472617-9472636 | None:intergenic | 50.0% | |
| TAGAGGCAAGATGAGCACCA+AGG | + | chr4_4:9472732-9472751 | Msa0668500:CDS | 50.0% | |
| TCTGTGATATCCCCCCAACA+GGG | + | chr4_4:9472839-9472858 | Msa0668500:CDS | 50.0% | |
| AGCCATCTTCAACCCTGTTG+GGG | - | chr4_4:9472854-9472873 | None:intergenic | 50.0% | |
| GAAGCCATCTTCAACCCTGT+TGG | - | chr4_4:9472856-9472875 | None:intergenic | 50.0% | |
| TGGGAACTCCACATCCATTC+AGG | + | chr4_4:9472885-9472904 | Msa0668500:CDS | 50.0% | |
| TGAACTGCTCACTCACCCTA+CGG | - | chr4_4:9472918-9472937 | None:intergenic | 50.0% | |
| TTGGTACACTGGTGAAGGCA+TGG | + | chr4_4:9472969-9472988 | Msa0668500:CDS | 50.0% | |
| GGACGAGATGGAATTCACTG+AGG | + | chr4_4:9472990-9473009 | Msa0668500:CDS | 50.0% | |
| ATACTCATCCTCATCAGCGG+TGG | - | chr4_4:9473067-9473086 | None:intergenic | 50.0% | |
| ACCGCTGATGAGGATGAGTA+TGG | + | chr4_4:9473066-9473085 | Msa0668500:CDS | 50.0% | |
| ! | AAGGCGAAGAGGAGGAGTAT+GGG | + | chr4_4:9473097-9473116 | Msa0668500:CDS | 50.0% |
| CACATCCAAGGTGGCCAATG+CGG | + | chr4_4:9470573-9470592 | Msa0668500:CDS | 55.0% | |
| ! | GAAGTGGTTTGCGCCGAACA+TGG | + | chr4_4:9470621-9470640 | Msa0668500:CDS | 55.0% |
| TGAATCACCGGTGTAGCGTC+CGG | - | chr4_4:9470658-9470677 | None:intergenic | 55.0% | |
| AGTATCCGGTCTGGACCGTA+TGG | + | chr4_4:9470780-9470799 | Msa0668500:CDS | 55.0% | |
| TCTGACCATACGGTCCAGAC+CGG | - | chr4_4:9470788-9470807 | None:intergenic | 55.0% | |
| GTGTTTGGTCAGAGTGGTGC+TGG | + | chr4_4:9470828-9470847 | Msa0668500:CDS | 55.0% | |
| ! | GTATGCCACTCACTTGGTGG+AGG | + | chr4_4:9472027-9472046 | Msa0668500:CDS | 55.0% |
| CAGTTCCTCCACCAAGTGAG+TGG | - | chr4_4:9472035-9472054 | None:intergenic | 55.0% | |
| ! | CACTCACTTGGTGGAGGAAC+TGG | + | chr4_4:9472033-9472052 | Msa0668500:CDS | 55.0% |
| TGGAGGAACTGGGTCTGGAA+TGG | + | chr4_4:9472044-9472063 | Msa0668500:CDS | 55.0% | |
| ! | GGAGGAACTGGGTCTGGAAT+GGG | + | chr4_4:9472045-9472064 | Msa0668500:CDS | 55.0% |
| TTTGCACCTTTGACCTCCCG+TGG | + | chr4_4:9472589-9472608 | Msa0668500:CDS | 55.0% | |
| CACTCAGAGTCCTGTACTGC+TGG | - | chr4_4:9472618-9472637 | None:intergenic | 55.0% | |
| ! | TGATGTGTGCTGCTGACCCT+AGG | + | chr4_4:9472677-9472696 | Msa0668500:CDS | 55.0% |
| !! | TGAGGTATCGCCCATGCCTA+GGG | - | chr4_4:9472696-9472715 | None:intergenic | 55.0% |
| AGGCAAGATGAGCACCAAGG+AGG | + | chr4_4:9472735-9472754 | Msa0668500:CDS | 55.0% | |
| GTCTGTGATATCCCCCCAAC+AGG | + | chr4_4:9472838-9472857 | Msa0668500:CDS | 55.0% | |
| CCATCTTCAACCCTGTTGGG+GGG | - | chr4_4:9472852-9472871 | None:intergenic | 55.0% | |
| GCCATCTTCAACCCTGTTGG+GGG | - | chr4_4:9472853-9472872 | None:intergenic | 55.0% | |
| ! | TGGTGAAGGCATGGACGAGA+TGG | + | chr4_4:9472978-9472997 | Msa0668500:CDS | 55.0% |
| TGGAGAGGAAGAAGGCGAAG+AGG | + | chr4_4:9473086-9473105 | Msa0668500:CDS | 55.0% | |
| AGAGGAAGAAGGCGAAGAGG+AGG | + | chr4_4:9473089-9473108 | Msa0668500:CDS | 55.0% | |
| GAAGGCGAAGAGGAGGAGTA+TGG | + | chr4_4:9473096-9473115 | Msa0668500:CDS | 55.0% | |
| ! | GGTTACCGCATTGGCCACCT+TGG | - | chr4_4:9470581-9470600 | None:intergenic | 60.0% |
| GATCCAACCGGACGCTACAC+CGG | + | chr4_4:9470648-9470667 | Msa0668500:CDS | 60.0% | |
| CTTGGTGGAGGAACTGGGTC+TGG | + | chr4_4:9472039-9472058 | Msa0668500:CDS | 60.0% | |
| TCCTGTACTGCTGGGAGCCA+CGG | - | chr4_4:9472609-9472628 | None:intergenic | 60.0% | |
| ! | TGTGCTGCTGACCCTAGGCA+TGG | + | chr4_4:9472682-9472701 | Msa0668500:CDS | 60.0% |
| ! | GTGCTGCTGACCCTAGGCAT+GGG | + | chr4_4:9472683-9472702 | Msa0668500:CDS | 60.0% |
| !! | GTGAGGTATCGCCCATGCCT+AGG | - | chr4_4:9472697-9472716 | None:intergenic | 60.0% |
| CCCCCCAACAGGGTTGAAGA+TGG | + | chr4_4:9472849-9472868 | Msa0668500:CDS | 60.0% | |
| CCTCATCAGCGGTGGCATCT+TGG | - | chr4_4:9473059-9473078 | None:intergenic | 60.0% | |
| CCAAGATGCCACCGCTGATG+AGG | + | chr4_4:9473056-9473075 | Msa0668500:CDS | 60.0% | |
| TCACCGGTGTAGCGTCCGGT+TGG | - | chr4_4:9470654-9470673 | None:intergenic | 65.0% | |
| TGGGAGCCACGGGAGGTCAA+AGG | - | chr4_4:9472598-9472617 | None:intergenic | 65.0% | |
| CCTGTACTGCTGGGAGCCAC+GGG | - | chr4_4:9472608-9472627 | None:intergenic | 65.0% | |
| GTACTGCTGGGAGCCACGGG+AGG | - | chr4_4:9472605-9472624 | None:intergenic | 70.0% | |
| CCCGTGGCTCCCAGCAGTAC+AGG | + | chr4_4:9472605-9472624 | Msa0668500:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 9470396 | 9473463 | 9470396 | ID=Msa0668500;Name=Msa0668500 |
| chr4_4 | mRNA | 9470396 | 9473463 | 9470396 | ID=Msa0668500-mRNA-1;Parent=Msa0668500;Name=Msa0668500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=162|1|1|1|1|1|3|329|450 |
| chr4_4 | exon | 9470396 | 9470951 | 9470396 | ID=Msa0668500-mRNA-1:exon:2996;Parent=Msa0668500-mRNA-1 |
| chr4_4 | exon | 9472019 | 9472288 | 9472019 | ID=Msa0668500-mRNA-1:exon:2997;Parent=Msa0668500-mRNA-1 |
| chr4_4 | exon | 9472446 | 9473463 | 9472446 | ID=Msa0668500-mRNA-1:exon:2998;Parent=Msa0668500-mRNA-1 |
| chr4_4 | five_prime_UTR | 9470396 | 9470557 | 9470396 | ID=Msa0668500-mRNA-1:five_prime_utr;Parent=Msa0668500-mRNA-1 |
| chr4_4 | CDS | 9470558 | 9470951 | 9470558 | ID=Msa0668500-mRNA-1:cds;Parent=Msa0668500-mRNA-1 |
| chr4_4 | CDS | 9472019 | 9472288 | 9472019 | ID=Msa0668500-mRNA-1:cds;Parent=Msa0668500-mRNA-1 |
| chr4_4 | CDS | 9472446 | 9473134 | 9472446 | ID=Msa0668500-mRNA-1:cds;Parent=Msa0668500-mRNA-1 |
| chr4_4 | three_prime_UTR | 9473135 | 9473463 | 9473135 | ID=Msa0668500-mRNA-1:three_prime_utr;Parent=Msa0668500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
