Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617940 | XP_003629736.1 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617940 | sp|B9DHQ0|TBA5_ARATH | 98.000 | 450 | 8 | 1 | 1 | 449 | 1 | 450 | 0.0 | 921 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001800 | Msa0617940 | 0.809325 | 2.001279e-50 | -8.615850e-47 |
| Msa0002420 | Msa0617940 | 0.808772 | 2.628456e-50 | -8.615850e-47 |
| Msa0040790 | Msa0617940 | 0.852261 | 5.183737e-61 | -8.615850e-47 |
| Msa0108630 | Msa0617940 | 0.813185 | 2.909474e-51 | -8.615850e-47 |
| Msa0607800 | Msa0617940 | 0.805950 | 1.042293e-49 | -8.615850e-47 |
| Msa0617940 | Msa0630440 | 0.819434 | 1.163730e-52 | -8.615850e-47 |
| Msa0617940 | Msa0648040 | 0.806794 | 6.918953e-50 | -8.615850e-47 |
| Msa0617940 | Msa0668500 | 0.810692 | 1.015679e-50 | -8.615850e-47 |
| Msa0617940 | Msa0690740 | 0.800739 | 1.251310e-48 | -8.615850e-47 |
| Msa0617940 | Msa0692790 | 0.978676 | 2.511034e-146 | -8.615850e-47 |
| Msa0617940 | Msa0700970 | 0.858110 | 1.031815e-62 | -8.615850e-47 |
| Msa0617940 | Msa0703950 | 0.815484 | 9.027888e-52 | -8.615850e-47 |
| Msa0617940 | Msa0837710 | 0.803144 | 4.010563e-49 | -8.615850e-47 |
| Msa0617940 | Msa0851850 | 0.815933 | 7.170013e-52 | -8.615850e-47 |
| Msa0617940 | Msa0903340 | 0.816874 | 4.415172e-52 | -8.615850e-47 |
| Msa0617940 | Msa0930770 | 0.856136 | 3.944812e-62 | -8.615850e-47 |
| Msa0617940 | Msa1013190 | 0.812574 | 3.959202e-51 | -8.615850e-47 |
| Msa0617940 | Msa1022420 | 0.817704 | 2.873041e-52 | -8.615850e-47 |
| Msa0617940 | Msa1104110 | 0.834963 | 2.211039e-56 | -8.615850e-47 |
| Msa0617940 | Msa1119440 | 0.805556 | 1.260668e-49 | -8.615850e-47 |
| Msa0617940 | Msa1145300 | 0.841323 | 5.095447e-58 | -8.615850e-47 |
| Msa0617940 | Msa1147700 | 0.859751 | 3.330855e-63 | -8.615850e-47 |
| Msa0617940 | Msa1201780 | 0.805706 | 1.172823e-49 | -8.615850e-47 |
| Msa0617940 | Msa1207190 | 0.805365 | 1.382894e-49 | -8.615850e-47 |
| Msa0617940 | Msa1240940 | 0.819275 | 1.265138e-52 | -8.615850e-47 |
| Msa0617940 | Msa1257440 | 0.804870 | 1.755360e-49 | -8.615850e-47 |
| Msa0617940 | Msa1257720 | 0.801536 | 8.596915e-49 | -8.615850e-47 |
| Msa0617940 | Msa1262590 | 0.803960 | 2.716916e-49 | -8.615850e-47 |
| Msa0617940 | Msa1282300 | 0.808974 | 2.379552e-50 | -8.615850e-47 |
| Msa0617940 | Msa1305250 | 0.813458 | 2.533723e-51 | -8.615850e-47 |
| Msa0617940 | Msa1368390 | 0.811330 | 7.390893e-51 | -8.615850e-47 |
| Msa0617940 | Msa1383820 | 0.870888 | 1.038013e-66 | -8.615850e-47 |
| Msa0617940 | Msa1402010 | 0.802279 | 6.049144e-49 | -8.615850e-47 |
| Msa0617940 | Msa1404680 | 0.806642 | 7.450107e-50 | -8.615850e-47 |
| Msa0617940 | Msa1450520 | 0.800316 | 1.526328e-48 | -8.615850e-47 |
| Msa0617940 | Msa1457770 | 0.805750 | 1.147980e-49 | -8.615850e-47 |
| Msa0124910 | Msa0617940 | 0.809940 | 1.475855e-50 | -8.615850e-47 |
| Msa0143590 | Msa0617940 | 0.808932 | 2.429349e-50 | -8.615850e-47 |
| Msa0164290 | Msa0617940 | 0.810134 | 1.340573e-50 | -8.615850e-47 |
| Msa0183710 | Msa0617940 | 0.806550 | 7.791306e-50 | -8.615850e-47 |
| Msa0184500 | Msa0617940 | 0.863076 | 3.222254e-64 | -8.615850e-47 |
| Msa0195230 | Msa0617940 | 0.821872 | 3.204303e-53 | -8.615850e-47 |
| Msa0195260 | Msa0617940 | 0.818861 | 1.571216e-52 | -8.615850e-47 |
| Msa0203080 | Msa0617940 | 0.865100 | 7.545270e-65 | -8.615850e-47 |
| Msa0204950 | Msa0617940 | 0.805875 | 1.080779e-49 | -8.615850e-47 |
| Msa0385310 | Msa0617940 | 0.853378 | 2.486555e-61 | -8.615850e-47 |
| Msa0386880 | Msa0617940 | 0.806438 | 8.226469e-50 | -8.615850e-47 |
| Msa0479420 | Msa0617940 | 0.848782 | 4.921296e-60 | -8.615850e-47 |
| Msa0246210 | Msa0617940 | 0.857529 | 1.534299e-62 | -8.615850e-47 |
| Msa0249850 | Msa0617940 | 0.829703 | 4.438955e-55 | -8.615850e-47 |
| Msa0276850 | Msa0617940 | 0.804615 | 1.983759e-49 | -8.615850e-47 |
| Msa0276860 | Msa0617940 | 0.840748 | 7.213239e-58 | -8.615850e-47 |
| Msa0279000 | Msa0617940 | 0.808955 | 2.401811e-50 | -8.615850e-47 |
| Msa0284800 | Msa0617940 | 0.837812 | 4.167121e-57 | -8.615850e-47 |
| Msa0320600 | Msa0617940 | 0.801384 | 9.237799e-49 | -8.615850e-47 |
| Msa0330520 | Msa0617940 | 0.847416 | 1.172960e-59 | -8.615850e-47 |
| Msa0523110 | Msa0617940 | 0.871161 | 8.435281e-67 | -8.615850e-47 |
| Msa0574900 | Msa0617940 | 0.857331 | 1.755281e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617940 | MtrunA17_Chr8g0378821 | 100.000 | 449 | 0 | 0 | 1 | 449 | 1 | 449 | 0.0 | 936 |
| Msa0617940 | MtrunA17_Chr7g0253411 | 94.989 | 439 | 22 | 0 | 1 | 439 | 1 | 439 | 0.0 | 857 |
| Msa0617940 | MtrunA17_Chr1g0206881 | 91.111 | 450 | 39 | 1 | 1 | 449 | 1 | 450 | 0.0 | 840 |
| Msa0617940 | MtrunA17_Chr4g0054511 | 92.711 | 439 | 32 | 0 | 1 | 439 | 1 | 439 | 0.0 | 839 |
| Msa0617940 | MtrunA17_Chr3g0140821 | 92.922 | 438 | 31 | 0 | 1 | 438 | 1 | 438 | 0.0 | 838 |
| Msa0617940 | MtrunA17_Chr6g0461281 | 87.333 | 450 | 54 | 2 | 1 | 449 | 1 | 448 | 0.0 | 799 |
| Msa0617940 | MtrunA17_Chr2g0300671 | 71.889 | 434 | 117 | 2 | 1 | 434 | 1 | 429 | 0.0 | 632 |
| Msa0617940 | MtrunA17_Chr2g0300491 | 71.429 | 434 | 119 | 2 | 1 | 434 | 1 | 429 | 0.0 | 632 |
| Msa0617940 | MtrunA17_Chr8g0393021 | 41.425 | 449 | 252 | 3 | 1 | 449 | 1 | 438 | 1.42e-126 | 374 |
| Msa0617940 | MtrunA17_Chr4g0051631 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 1.72e-126 | 374 |
| Msa0617940 | MtrunA17_Chr4g0008401 | 42.396 | 434 | 240 | 2 | 1 | 434 | 1 | 424 | 8.38e-126 | 372 |
| Msa0617940 | MtrunA17_Chr2g0292921 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 8.58e-126 | 372 |
| Msa0617940 | MtrunA17_Chr4g0008361 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 1.44e-125 | 372 |
| Msa0617940 | MtrunA17_Chr3g0142731 | 40.553 | 434 | 250 | 1 | 1 | 434 | 1 | 426 | 6.04e-125 | 370 |
| Msa0617940 | MtrunA17_Chr1g0203181 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 8.55e-125 | 370 |
| Msa0617940 | MtrunA17_Chr7g0255791 | 41.475 | 434 | 244 | 3 | 1 | 434 | 1 | 424 | 1.07e-124 | 369 |
| Msa0617940 | MtrunA17_Chr4g0007371 | 41.514 | 436 | 243 | 3 | 1 | 434 | 1 | 426 | 2.70e-124 | 369 |
| Msa0617940 | MtrunA17_Chr8g0386781 | 40.275 | 437 | 245 | 3 | 1 | 434 | 1 | 424 | 2.98e-124 | 368 |
| Msa0617940 | MtrunA17_Chr3g0109241 | 89.855 | 138 | 14 | 0 | 268 | 405 | 1 | 138 | 7.39e-91 | 272 |
| Msa0617940 | MtrunA17_Chr7g0275431 | 30.562 | 445 | 288 | 8 | 2 | 433 | 3 | 439 | 7.08e-77 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617940 | AT5G19780.1 | 98.000 | 450 | 8 | 1 | 1 | 449 | 1 | 450 | 0.0 | 921 |
| Msa0617940 | AT5G19770.1 | 98.000 | 450 | 8 | 1 | 1 | 449 | 1 | 450 | 0.0 | 921 |
| Msa0617940 | AT1G64740.1 | 93.563 | 435 | 28 | 0 | 1 | 435 | 1 | 435 | 0.0 | 836 |
| Msa0617940 | AT1G50010.1 | 92.874 | 435 | 31 | 0 | 1 | 435 | 1 | 435 | 0.0 | 834 |
| Msa0617940 | AT1G04820.1 | 92.874 | 435 | 31 | 0 | 1 | 435 | 1 | 435 | 0.0 | 834 |
| Msa0617940 | AT4G14960.2 | 92.644 | 435 | 32 | 0 | 1 | 435 | 1 | 435 | 0.0 | 832 |
| Msa0617940 | AT4G14960.1 | 87.961 | 407 | 42 | 1 | 1 | 407 | 1 | 400 | 0.0 | 733 |
| Msa0617940 | AT1G75780.1 | 41.475 | 434 | 245 | 2 | 1 | 434 | 1 | 425 | 7.44e-128 | 378 |
| Msa0617940 | AT5G62690.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 2.10e-126 | 374 |
| Msa0617940 | AT5G62700.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 2.10e-126 | 374 |
| Msa0617940 | AT1G20010.1 | 41.244 | 434 | 246 | 2 | 1 | 434 | 1 | 425 | 2.12e-125 | 372 |
| Msa0617940 | AT2G29550.1 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 2.17e-125 | 372 |
| Msa0617940 | AT5G12250.1 | 41.475 | 434 | 244 | 3 | 1 | 434 | 1 | 424 | 3.04e-125 | 371 |
| Msa0617940 | AT4G20890.1 | 41.705 | 434 | 243 | 3 | 1 | 434 | 1 | 424 | 5.47e-125 | 370 |
| Msa0617940 | AT5G23860.2 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.21e-124 | 370 |
| Msa0617940 | AT5G23860.1 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.21e-124 | 370 |
| Msa0617940 | AT5G44340.1 | 41.705 | 434 | 243 | 3 | 1 | 434 | 1 | 424 | 2.66e-123 | 366 |
| Msa0617940 | AT5G05620.1 | 31.236 | 445 | 285 | 8 | 2 | 433 | 3 | 439 | 4.59e-78 | 251 |
| Msa0617940 | AT3G61650.1 | 30.519 | 462 | 295 | 9 | 2 | 445 | 3 | 456 | 6.45e-77 | 248 |
Find 142 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACGTCTTTCTGTTGATTA+TGG | 0.176344 | 4_2:-68644884 | Msa0617940:CDS |
| AGGTTTGGGTTCACTTCTTT+TGG | 0.254943 | 4_2:-68644906 | Msa0617940:CDS |
| GGTGGAACCGGTTCAGGTTT+GGG | 0.262975 | 4_2:-68644920 | Msa0617940:CDS |
| CAGCCTCCTTCAGTTGTTCC+TGG | 0.319747 | 4_2:-68643830 | Msa0617940:CDS |
| TTGCCGGAGATGAGTTGTTC+AGG | 0.320827 | 4_2:+68645165 | None:intergenic |
| AACACAGCATTGGTAATTTC+CGG | 0.327913 | 4_2:+68644335 | None:intergenic |
| TGGTGGAACCGGTTCAGGTT+TGG | 0.328516 | 4_2:-68644921 | Msa0617940:CDS |
| AACACATTCTTCAGCGAAAC+TGG | 0.328754 | 4_2:-68645282 | Msa0617940:CDS |
| TTTGGATCGTGTTAGGAAAT+TGG | 0.329849 | 4_2:-68644993 | Msa0617940:CDS |
| GTATTAGTAGTAGTAAATTA+AGG | 0.333898 | 4_2:+68645661 | None:intergenic |
| GTTGGTGGTGGAACCGGTTC+AGG | 0.343909 | 4_2:-68644926 | Msa0617940:CDS |
| ACCACCTCGTTGAGGTTTGA+TGG | 0.345949 | 4_2:-68644485 | Msa0617940:CDS |
| ATCTGTGTTTGGATCGTGTT+AGG | 0.350514 | 4_2:-68645000 | Msa0617940:CDS |
| AGAATTACCGACTTGGATTC+CGG | 0.354165 | 4_2:+68645485 | None:intergenic |
| CACTGATGTGGCGGTGCTCT+TGG | 0.354267 | 4_2:-68644609 | Msa0617940:CDS |
| AACGCTGTTGGTGGTGGAAC+CGG | 0.370166 | 4_2:-68644932 | Msa0617940:CDS |
| TTCTTCAGCGAAACTGGTTC+CGG | 0.377933 | 4_2:-68645276 | Msa0617940:CDS |
| TCCAAGTCGGTAATTCTTGC+TGG | 0.386306 | 4_2:-68645479 | Msa0617940:CDS |
| ATGTCTTGAACTTATACAAT+AGG | 0.393095 | 4_2:+68643548 | None:intergenic |
| GTAGATGGTGAATCCAAGTT+TGG | 0.394713 | 4_2:+68644853 | None:intergenic |
| ACAGCAGCATTGACATCCTT+TGG | 0.397105 | 4_2:+68644227 | None:intergenic |
| CATCATTCAAACTTGTGAAA+TGG | 0.409499 | 4_2:-68643427 | Msa0617940:three_prime_UTR |
| GGAAATTGTAGATCTGTGTT+TGG | 0.411361 | 4_2:-68645011 | Msa0617940:CDS |
| GCCTTAGCAGCAGAGATAAC+AGG | 0.413078 | 4_2:+68644380 | None:intergenic |
| CCAGTGGACAAAGGCTCTCT+TGG | 0.425867 | 4_2:+68643703 | None:intergenic |
| AGGCGATCTATGACATTTGT+AGG | 0.426144 | 4_2:-68644580 | Msa0617940:CDS |
| GTTAGCGGCGTCTTCTTTGC+CGG | 0.427769 | 4_2:+68645149 | None:intergenic |
| GCCATATATTTCCCATGCCT+TGG | 0.429047 | 4_2:+68644281 | None:intergenic |
| CTAGGTTTCAACTGCTGTTG+TGG | 0.430726 | 4_2:-68644675 | Msa0617940:intron |
| CAACTTATACCAACTTGAAC+AGG | 0.431265 | 4_2:-68644535 | Msa0617940:CDS |
| TCCAAGGCATGGGAAATATA+TGG | 0.435927 | 4_2:-68644282 | Msa0617940:CDS |
| GGCGCGTGGAACGTGTTTGC+CGG | 0.438994 | 4_2:+68645257 | None:intergenic |
| ATGTATGACAGGTGCCCAAC+TGG | 0.444943 | 4_2:-68643875 | Msa0617940:intron |
| GATAACTGTACCGGTCTTCA+AGG | 0.448969 | 4_2:-68644968 | Msa0617940:CDS |
| GTCGGTGAGGGCATGGAAGA+AGG | 0.451862 | 4_2:-68643677 | Msa0617940:CDS |
| AAGTGAACCCAAACCTGAAC+CGG | 0.452878 | 4_2:+68644913 | None:intergenic |
| CATTTCACAAGTTTGAATGA+TGG | 0.459908 | 4_2:+68643428 | None:intergenic |
| TACCTGAGGGGAAGGGTAGA+TGG | 0.468178 | 4_2:+68644838 | None:intergenic |
| TGCCGGAGATGAGTTGTTCA+GGG | 0.468722 | 4_2:+68645166 | None:intergenic |
| CGAGAGCAGCAAGATCTTCA+CGG | 0.470136 | 4_2:+68643639 | None:intergenic |
| TCGGTGAGGGCATGGAAGAA+GGG | 0.478798 | 4_2:-68643676 | Msa0617940:CDS |
| AACCTAGGCATCATGCCGTC+AGG | 0.480667 | 4_2:+68645426 | None:intergenic |
| TATTACAGTGATTCCTCCGT+TGG | 0.488114 | 4_2:-68645324 | Msa0617940:intron |
| CCAAGAGAGCCTTTGTCCAC+TGG | 0.491892 | 4_2:-68643703 | Msa0617940:CDS |
| ACGAGGATACGGCACAAGAT+TGG | 0.495414 | 4_2:+68644430 | None:intergenic |
| ACCTGTTATCTCTGCTGCTA+AGG | 0.495705 | 4_2:-68644381 | Msa0617940:CDS |
| CACCATCTACCCTTCCCCTC+AGG | 0.496887 | 4_2:-68644840 | Msa0617940:intron |
| GGACTGTTCAATTTGTTGAC+TGG | 0.497630 | 4_2:-68644184 | Msa0617940:intron |
| GTCATCGATGAAGTTCGTTC+CGG | 0.499563 | 4_2:-68645210 | Msa0617940:CDS |
| CTGGTATGTCGGTGAGGGCA+TGG | 0.501551 | 4_2:-68643684 | Msa0617940:CDS |
| GGAGCAGAAGATGATGAGGA+AGG | 0.503402 | 4_2:-68643587 | Msa0617940:CDS |
| CTGTTCAAGTTGGTATAAGT+TGG | 0.510056 | 4_2:+68644536 | None:intergenic |
| AATGAAAATGAGAAATGAGA+AGG | 0.513486 | 4_2:+68645610 | None:intergenic |
| CACCCTGAACAACTCATCTC+CGG | 0.515494 | 4_2:-68645168 | Msa0617940:CDS |
| ATGAAAATGAGAAATGAGAA+GGG | 0.518271 | 4_2:+68645611 | None:intergenic |
| TACCACATTTGAAACCAGTT+GGG | 0.518530 | 4_2:+68643861 | None:intergenic |
| ATCGAACTTGTGATCAATGC+GGG | 0.523345 | 4_2:+68643736 | None:intergenic |
| GAGAAAGATTATGAAGAAGT+TGG | 0.523429 | 4_2:-68643617 | Msa0617940:CDS |
| GTTCAGGGTGGAAGAGTTGT+CGG | 0.523884 | 4_2:+68645181 | None:intergenic |
| CCCAGCAAGAATTACCGACT+TGG | 0.525270 | 4_2:+68645478 | None:intergenic |
| TCCTGGCGGTGACCTTGCTA+AGG | 0.530128 | 4_2:-68643813 | Msa0617940:CDS |
| GAAGAGTTGTCGGTAGGTAC+CGG | 0.530553 | 4_2:+68645191 | None:intergenic |
| AGAAGATGATGAGGAAGGAG+AGG | 0.532591 | 4_2:-68643582 | Msa0617940:CDS |
| TTATGAAGAAGTTGGTGCTG+AGG | 0.534554 | 4_2:-68643609 | Msa0617940:CDS |
| GAATGTTGTACCTGAGGGGA+AGG | 0.534693 | 4_2:+68644830 | None:intergenic |
| CAGTAACAACACTGCTGTTG+CGG | 0.536971 | 4_2:-68643768 | Msa0617940:CDS |
| GTCCACTGGTATGTCGGTGA+GGG | 0.540123 | 4_2:-68643689 | Msa0617940:CDS |
| CACTTAGCCATCATACTAGC+AGG | 0.541426 | 4_2:+68644308 | None:intergenic |
| GATACGGCACAAGATTGGTC+TGG | 0.542354 | 4_2:+68644435 | None:intergenic |
| TCATGAGCAGCTATCTGTGC+CGG | 0.543119 | 4_2:-68644354 | Msa0617940:CDS |
| TATGGAAAGAAATCCAAACT+TGG | 0.546100 | 4_2:-68644866 | Msa0617940:CDS |
| TATGAAGAAGTTGGTGCTGA+GGG | 0.548545 | 4_2:-68643608 | Msa0617940:CDS |
| ATACCACATTTGAAACCAGT+TGG | 0.549643 | 4_2:+68643860 | None:intergenic |
| TTTAGATAGTCAGGAAGTCA+AGG | 0.553844 | 4_2:-68643266 | Msa0617940:three_prime_UTR |
| AGAGGCAATAAATTCAGTGT+TGG | 0.555343 | 4_2:+68643238 | None:intergenic |
| TTGTTCTATTTGGGAAACAA+AGG | 0.556124 | 4_2:-68643313 | Msa0617940:three_prime_UTR |
| CGGTGAGGGCATGGAAGAAG+GGG | 0.558712 | 4_2:-68643675 | Msa0617940:CDS |
| TCTTCTTGAGCACACTGATG+TGG | 0.559183 | 4_2:-68644621 | Msa0617940:CDS |
| GAGAGCAGCAAGATCTTCAC+GGG | 0.561278 | 4_2:+68643640 | None:intergenic |
| AGTATTCACATCGGTCAAGC+CGG | 0.564094 | 4_2:-68645504 | Msa0617940:CDS |
| ACCTTAGCAAGGTCACCGCC+AGG | 0.564664 | 4_2:+68643812 | None:intergenic |
| TAAAAGAACAATACGAGTGG+AGG | 0.565884 | 4_2:+68643470 | None:intergenic |
| CCAAGTCGGTAATTCTTGCT+GGG | 0.565989 | 4_2:-68645478 | Msa0617940:CDS |
| GCCTTTGTCCACTGGTATGT+CGG | 0.567211 | 4_2:-68643695 | Msa0617940:CDS |
| ATGAAATGAATACGAGGATA+CGG | 0.568430 | 4_2:+68644419 | None:intergenic |
| TCCTCTAGCGAAATTGTTAG+CGG | 0.568659 | 4_2:+68645134 | None:intergenic |
| AAACCTCAACGAGGTGGTGA+GGG | 0.569782 | 4_2:+68644490 | None:intergenic |
| GTCGATAGAACACTGTTGTA+TGG | 0.573851 | 4_2:+68644650 | None:intergenic |
| GCTAAGTGTGATCCAAGGCA+TGG | 0.576706 | 4_2:-68644293 | Msa0617940:CDS |
| TGATATCAACCTGTTCAAGT+TGG | 0.577755 | 4_2:+68644526 | None:intergenic |
| GTTTGAGCCTGCTAGTATGA+TGG | 0.579221 | 4_2:-68644315 | Msa0617940:CDS |
| TGAGGGAGCAGAAGATGATG+AGG | 0.580692 | 4_2:-68643591 | Msa0617940:CDS |
| CAGCTCTTTGCACCTTAGCA+AGG | 0.580894 | 4_2:+68643801 | None:intergenic |
| TTGCGTACGCATACTGCAAG+AGG | 0.581566 | 4_2:+68643220 | None:intergenic |
| AGCCTGACGGCATGATGCCT+AGG | 0.582568 | 4_2:-68645428 | Msa0617940:intron |
| ATAACTGTACCGGTCTTCAA+GGG | 0.586323 | 4_2:-68644967 | Msa0617940:CDS |
| AAATTGGCTGATAACTGTAC+CGG | 0.586586 | 4_2:-68644977 | Msa0617940:CDS |
| TGCCCAACTGGTTTCAAATG+TGG | 0.589673 | 4_2:-68643863 | Msa0617940:CDS |
| AGCAGGCTCAAACACAGCAT+TGG | 0.589885 | 4_2:+68644325 | None:intergenic |
| CAAACCTCAACGAGGTGGTG+AGG | 0.590642 | 4_2:+68644489 | None:intergenic |
| GAGCTTTACTGTCTCGAACA+TGG | 0.594726 | 4_2:-68645456 | Msa0617940:CDS |
| TGTCCACTGGTATGTCGGTG+AGG | 0.595519 | 4_2:-68643690 | Msa0617940:CDS |
| AAAAGAACAATACGAGTGGA+GGG | 0.596182 | 4_2:+68643471 | None:intergenic |
| GGCGGTGCTCTTGGATAATG+AGG | 0.598449 | 4_2:-68644600 | Msa0617940:CDS |
| AGATCTACGAAGACGGCGCG+TGG | 0.600243 | 4_2:+68645243 | None:intergenic |
| TCACCGCCAGGAACAACTGA+AGG | 0.606748 | 4_2:+68643824 | None:intergenic |
| GGAGATCTCTTGATATTGAG+AGG | 0.607664 | 4_2:-68644559 | Msa0617940:CDS |
| CCGTGGTGATGTTGTTCCAA+AGG | 0.608496 | 4_2:-68644243 | Msa0617940:CDS |
| TGCATCGTGTGCTACTCCAA+CGG | 0.608526 | 4_2:+68645308 | None:intergenic |
| AATGTTGTACCTGAGGGGAA+GGG | 0.614483 | 4_2:+68644831 | None:intergenic |
| GCCGCTAACAATTTCGCTAG+AGG | 0.616891 | 4_2:-68645135 | Msa0617940:CDS |
| CTAAGTGTGATCCAAGGCAT+GGG | 0.617321 | 4_2:-68644292 | Msa0617940:CDS |
| CATCCCTCACCACCTCGTTG+AGG | 0.618692 | 4_2:-68644493 | Msa0617940:CDS |
| TGCCCTCACCGACATACCAG+TGG | 0.624103 | 4_2:+68643687 | None:intergenic |
| TAACAACACTGCTGTTGCGG+AGG | 0.625191 | 4_2:-68643765 | Msa0617940:CDS |
| TTCGCTAGAGGACACTACAC+TGG | 0.625494 | 4_2:-68645123 | Msa0617940:intron |
| AAGGATGTCAATGCTGCTGT+TGG | 0.630667 | 4_2:-68644224 | Msa0617940:CDS |
| GGAACGAACTTCATCGATGA+CGG | 0.631624 | 4_2:+68645212 | None:intergenic |
| GGTCAAGCCGGAATCCAAGT+CGG | 0.631989 | 4_2:-68645492 | Msa0617940:CDS |
| GGGTTCGAGATCTACGAAGA+CGG | 0.637629 | 4_2:+68645236 | None:intergenic |
| CGAACTTCATCGATGACGGT+GGG | 0.641237 | 4_2:+68645216 | None:intergenic |
| ACGAACTTCATCGATGACGG+TGG | 0.644676 | 4_2:+68645215 | None:intergenic |
| TCTTGAGCACACTGATGTGG+CGG | 0.645120 | 4_2:-68644618 | Msa0617940:CDS |
| ATGATGGAACTATATCACAC+TGG | 0.656762 | 4_2:+68643444 | None:intergenic |
| AGGGTGGAAGAGTTGTCGGT+AGG | 0.660011 | 4_2:+68645185 | None:intergenic |
| ATCGTGTGCTACTCCAACGG+AGG | 0.660419 | 4_2:+68645311 | None:intergenic |
| TGATGGCTAAGTGTGATCCA+AGG | 0.660907 | 4_2:-68644298 | Msa0617940:CDS |
| CCTCCTTCAGTTGTTCCTGG+CGG | 0.661195 | 4_2:-68643827 | Msa0617940:CDS |
| AAATAAAAGAACAATACGAG+TGG | 0.663738 | 4_2:+68643467 | None:intergenic |
| GAACATGGCATTCAGCCTGA+CGG | 0.664223 | 4_2:-68645441 | Msa0617940:CDS |
| CCGCCAGGAACAACTGAAGG+AGG | 0.665389 | 4_2:+68643827 | None:intergenic |
| TTGGCACCATCAAAACAAAG+AGG | 0.672011 | 4_2:-68644205 | Msa0617940:CDS |
| ACCGACATACCAGTGGACAA+AGG | 0.672853 | 4_2:+68643694 | None:intergenic |
| ACCATCAAACCTCAACGAGG+TGG | 0.684702 | 4_2:+68644484 | None:intergenic |
| GAAATTATCAGTATTCACAT+CGG | 0.684879 | 4_2:-68645513 | Msa0617940:CDS |
| CGGAGATGAGTTGTTCAGGG+TGG | 0.684993 | 4_2:+68645169 | None:intergenic |
| GCTTGCTGTTTGATGTACCG+TGG | 0.703831 | 4_2:-68644260 | Msa0617940:CDS |
| TCTTGAATGTTGTACCTGAG+GGG | 0.708772 | 4_2:+68644826 | None:intergenic |
| GATCGAACTTGTGATCAATG+CGG | 0.718228 | 4_2:+68643735 | None:intergenic |
| GAAAGCATGAAATGAATACG+AGG | 0.732987 | 4_2:+68644413 | None:intergenic |
| CCTTTGGAACAACATCACCA+CGG | 0.768666 | 4_2:+68644243 | None:intergenic |
| AGCACCATCAAACCTCAACG+AGG | 0.774284 | 4_2:+68644481 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACTTTAGGTTAAAAAA+AGG | + | chr4_2:68643503-68643522 | None:intergenic | 15.0% |
| !! | TGATGAATTAAAAAAACTTT+AGG | + | chr4_2:68643514-68643533 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTCTTTTTTTTG+TGG | - | chr4_2:68643842-68643861 | Msa0617940:CDS | 15.0% |
| !! | GTATTAGTAGTAGTAAATTA+AGG | + | chr4_2:68643230-68643249 | None:intergenic | 20.0% |
| !! | AAAATGAAATTAACTAACCT+AGG | + | chr4_2:68643480-68643499 | None:intergenic | 20.0% |
| !! | AATCATGTTGATGTAAATAT+TGG | - | chr4_2:68644118-68644137 | Msa0617940:intron | 20.0% |
| !!! | TAATGGTGAATTGTTATTTT+TGG | - | chr4_2:68644188-68644207 | Msa0617940:CDS | 20.0% |
| !! | AATAACTATTTGTAGAATGA+CGG | - | chr4_2:68644740-68644759 | Msa0617940:intron | 20.0% |
| !!! | TTTTATAAGGGTAGATAATT+TGG | - | chr4_2:68644816-68644835 | Msa0617940:intron | 20.0% |
| !!! | ACTGATTTGAAATAATCAAA+TGG | - | chr4_2:68644887-68644906 | Msa0617940:CDS | 20.0% |
| !! | TTCATATTATAATGTATGAC+AGG | - | chr4_2:68645002-68645021 | Msa0617940:CDS | 20.0% |
| !!! | TCATTATCTTTTGTTCTATT+TGG | - | chr4_2:68645565-68645584 | Msa0617940:five_prime_UTR | 20.0% |
| !!! | CATTATCTTTTGTTCTATTT+GGG | - | chr4_2:68645566-68645585 | Msa0617940:five_prime_UTR | 20.0% |
| ! | ATGAAAATGAGAAATGAGAA+GGG | + | chr4_2:68643280-68643299 | None:intergenic | 25.0% |
| ! | AATGAAAATGAGAAATGAGA+AGG | + | chr4_2:68643281-68643300 | None:intergenic | 25.0% |
| !!! | ATTTTAGAAAGAAGAAGAAG+TGG | + | chr4_2:68643323-68643342 | None:intergenic | 25.0% |
| ! | GAAATTATCAGTATTCACAT+CGG | - | chr4_2:68643375-68643394 | Msa0617940:three_prime_UTR | 25.0% |
| !!! | ATTGGTTTTTCTGTTTGTAA+TGG | - | chr4_2:68644171-68644190 | Msa0617940:intron | 25.0% |
| !!! | GAATTGTTATTTTTGGATCT+AGG | - | chr4_2:68644195-68644214 | Msa0617940:CDS | 25.0% |
| ! | ATGTCTTGAACTTATACAAT+AGG | + | chr4_2:68645343-68645362 | None:intergenic | 25.0% |
| ! | AAATAAAAGAACAATACGAG+TGG | + | chr4_2:68645424-68645443 | None:intergenic | 25.0% |
| ! | CTATCTAAACAAAAACAAAC+TGG | + | chr4_2:68645611-68645630 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGTTTAGATAGTC+AGG | - | chr4_2:68645613-68645632 | Msa0617940:five_prime_UTR | 25.0% |
| AAATCTCGAAATTAGGGTTA+GGG | + | chr4_2:68643808-68643827 | None:intergenic | 30.0% | |
| AGCAAGAAATCTCGAAATTA+GGG | + | chr4_2:68643814-68643833 | None:intergenic | 30.0% | |
| AAGCAAGAAATCTCGAAATT+AGG | + | chr4_2:68643815-68643834 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTTTGTGGTTCAGT+TGG | - | chr4_2:68643851-68643870 | Msa0617940:CDS | 30.0% |
| TATGGAAAGAAATCCAAACT+TGG | - | chr4_2:68644022-68644041 | Msa0617940:intron | 30.0% | |
| GATTGATGTATAGATCATAG+TGG | - | chr4_2:68644145-68644164 | Msa0617940:intron | 30.0% | |
| ATGAAATGAATACGAGGATA+CGG | + | chr4_2:68644472-68644491 | None:intergenic | 30.0% | |
| CCTTATAAAATATGCAGCTA+CGG | + | chr4_2:68644806-68644825 | None:intergenic | 30.0% | |
| ! | CGTAGCTGCATATTTTATAA+GGG | - | chr4_2:68644804-68644823 | Msa0617940:intron | 30.0% |
| !! | ACAATTCACAACTTGTTACT+AGG | - | chr4_2:68644923-68644942 | Msa0617940:CDS | 30.0% |
| GAGAAAGATTATGAAGAAGT+TGG | - | chr4_2:68645271-68645290 | Msa0617940:CDS | 30.0% | |
| TGATTGTTTCAAGCAAAAAG+AGG | - | chr4_2:68645375-68645394 | Msa0617940:intron | 30.0% | |
| GATTGTTTCAAGCAAAAAGA+GGG | - | chr4_2:68645376-68645395 | Msa0617940:intron | 30.0% | |
| CATTTCACAAGTTTGAATGA+TGG | + | chr4_2:68645463-68645482 | None:intergenic | 30.0% | |
| CATCATTCAAACTTGTGAAA+TGG | - | chr4_2:68645461-68645480 | Msa0617940:CDS | 30.0% | |
| !! | TATGCGTCTAATTTTGTTGT+AGG | - | chr4_2:68645491-68645510 | Msa0617940:CDS | 30.0% |
| TTGTTCTATTTGGGAAACAA+AGG | - | chr4_2:68645575-68645594 | Msa0617940:five_prime_UTR | 30.0% | |
| GAAATCTCGAAATTAGGGTT+AGG | + | chr4_2:68643809-68643828 | None:intergenic | 35.0% | |
| GGAAATTGTAGATCTGTGTT+TGG | - | chr4_2:68643877-68643896 | Msa0617940:intron | 35.0% | |
| TTTGGATCGTGTTAGGAAAT+TGG | - | chr4_2:68643895-68643914 | Msa0617940:intron | 35.0% | |
| AAATTGGCTGATAACTGTAC+CGG | - | chr4_2:68643911-68643930 | Msa0617940:intron | 35.0% | |
| !!! | TTTTTGGTTTTCAACGCTGT+TGG | - | chr4_2:68643944-68643963 | Msa0617940:intron | 35.0% |
| ! | GAACGTCTTTCTGTTGATTA+TGG | - | chr4_2:68644004-68644023 | Msa0617940:intron | 35.0% |
| ATCTTGAATGTTGTACCTGA+GGG | + | chr4_2:68644066-68644085 | None:intergenic | 35.0% | |
| TGATGTATAGATCATAGTGG+TGG | - | chr4_2:68644148-68644167 | Msa0617940:intron | 35.0% | |
| !! | TATAGATCATAGTGGTGGAT+TGG | - | chr4_2:68644153-68644172 | Msa0617940:intron | 35.0% |
| !! | CTGTTCAAGTTGGTATAAGT+TGG | + | chr4_2:68644355-68644374 | None:intergenic | 35.0% |
| CAACTTATACCAACTTGAAC+AGG | - | chr4_2:68644353-68644372 | Msa0617940:CDS | 35.0% | |
| TGATATCAACCTGTTCAAGT+TGG | + | chr4_2:68644365-68644384 | None:intergenic | 35.0% | |
| ! | GAAAGCATGAAATGAATACG+AGG | + | chr4_2:68644478-68644497 | None:intergenic | 35.0% |
| !! | AACACAGCATTGGTAATTTC+CGG | + | chr4_2:68644556-68644575 | None:intergenic | 35.0% |
| !!! | AACAGTCCTCTTTGTTTTGA+TGG | + | chr4_2:68644692-68644711 | None:intergenic | 35.0% |
| ! | CCGTAGCTGCATATTTTATA+AGG | - | chr4_2:68644803-68644822 | Msa0617940:intron | 35.0% |
| TACTAGGACTTAATGTGATC+TGG | - | chr4_2:68644939-68644958 | Msa0617940:CDS | 35.0% | |
| ACTAGGACTTAATGTGATCT+GGG | - | chr4_2:68644940-68644959 | Msa0617940:CDS | 35.0% | |
| TGGGCTACTAATTTCTCTTA+TGG | - | chr4_2:68644959-68644978 | Msa0617940:CDS | 35.0% | |
| ! | TACCACATTTGAAACCAGTT+GGG | + | chr4_2:68645030-68645049 | None:intergenic | 35.0% |
| ! | ATACCACATTTGAAACCAGT+TGG | + | chr4_2:68645031-68645050 | None:intergenic | 35.0% |
| AAAAGAACAATACGAGTGGA+GGG | + | chr4_2:68645420-68645439 | None:intergenic | 35.0% | |
| TAAAAGAACAATACGAGTGG+AGG | + | chr4_2:68645421-68645440 | None:intergenic | 35.0% | |
| ! | ATGATGGAACTATATCACAC+TGG | + | chr4_2:68645447-68645466 | None:intergenic | 35.0% |
| TTTAGATAGTCAGGAAGTCA+AGG | - | chr4_2:68645622-68645641 | Msa0617940:five_prime_UTR | 35.0% | |
| AGAGGCAATAAATTCAGTGT+TGG | + | chr4_2:68645653-68645672 | None:intergenic | 35.0% | |
| !! | AGAATTACCGACTTGGATTC+CGG | + | chr4_2:68643406-68643425 | None:intergenic | 40.0% |
| TATTACAGTGATTCCTCCGT+TGG | - | chr4_2:68643564-68643583 | Msa0617940:exon | 40.0% | |
| AACACATTCTTCAGCGAAAC+TGG | - | chr4_2:68643606-68643625 | Msa0617940:CDS | 40.0% | |
| TCCTCTAGCGAAATTGTTAG+CGG | + | chr4_2:68643757-68643776 | None:intergenic | 40.0% | |
| ! | TTTTTGTGGTTCAGTTGGCA+AGG | - | chr4_2:68643856-68643875 | Msa0617940:CDS | 40.0% |
| ATCTGTGTTTGGATCGTGTT+AGG | - | chr4_2:68643888-68643907 | Msa0617940:intron | 40.0% | |
| ! | ATAACTGTACCGGTCTTCAA+GGG | - | chr4_2:68643921-68643940 | Msa0617940:intron | 40.0% |
| AACCAAAAACCCTTGAAGAC+CGG | + | chr4_2:68643933-68643952 | None:intergenic | 40.0% | |
| !! | AGGTTTGGGTTCACTTCTTT+TGG | - | chr4_2:68643982-68644001 | Msa0617940:intron | 40.0% |
| GTAGATGGTGAATCCAAGTT+TGG | + | chr4_2:68644038-68644057 | None:intergenic | 40.0% | |
| TCTTGAATGTTGTACCTGAG+GGG | + | chr4_2:68644065-68644084 | None:intergenic | 40.0% | |
| GATCTTGAATGTTGTACCTG+AGG | + | chr4_2:68644067-68644086 | None:intergenic | 40.0% | |
| GTCGATAGAACACTGTTGTA+TGG | + | chr4_2:68644241-68644260 | None:intergenic | 40.0% | |
| AGGCGATCTATGACATTTGT+AGG | - | chr4_2:68644308-68644327 | Msa0617940:CDS | 40.0% | |
| GGAGATCTCTTGATATTGAG+AGG | - | chr4_2:68644329-68644348 | Msa0617940:CDS | 40.0% | |
| TCCAAGGCATGGGAAATATA+TGG | - | chr4_2:68644606-68644625 | Msa0617940:CDS | 40.0% | |
| TTGGCACCATCAAAACAAAG+AGG | - | chr4_2:68644683-68644702 | Msa0617940:intron | 40.0% | |
| !! | GGACTGTTCAATTTGTTGAC+TGG | - | chr4_2:68644704-68644723 | Msa0617940:intron | 40.0% |
| ATCGAACTTGTGATCAATGC+GGG | + | chr4_2:68645155-68645174 | None:intergenic | 40.0% | |
| GATCGAACTTGTGATCAATG+CGG | + | chr4_2:68645156-68645175 | None:intergenic | 40.0% | |
| !! | TTATGAAGAAGTTGGTGCTG+AGG | - | chr4_2:68645279-68645298 | Msa0617940:CDS | 40.0% |
| !! | TATGAAGAAGTTGGTGCTGA+GGG | - | chr4_2:68645280-68645299 | Msa0617940:CDS | 40.0% |
| AGTATTCACATCGGTCAAGC+CGG | - | chr4_2:68643384-68643403 | Msa0617940:three_prime_UTR | 45.0% | |
| TCCAAGTCGGTAATTCTTGC+TGG | - | chr4_2:68643409-68643428 | Msa0617940:three_prime_UTR | 45.0% | |
| CCAAGTCGGTAATTCTTGCT+GGG | - | chr4_2:68643410-68643429 | Msa0617940:three_prime_UTR | 45.0% | |
| GAGCTTTACTGTCTCGAACA+TGG | - | chr4_2:68643432-68643451 | Msa0617940:three_prime_UTR | 45.0% | |
| ! | TTCTTCAGCGAAACTGGTTC+CGG | - | chr4_2:68643612-68643631 | Msa0617940:CDS | 45.0% |
| GGAACGAACTTCATCGATGA+CGG | + | chr4_2:68643679-68643698 | None:intergenic | 45.0% | |
| GTCATCGATGAAGTTCGTTC+CGG | - | chr4_2:68643678-68643697 | Msa0617940:CDS | 45.0% | |
| ! | GATAACTGTACCGGTCTTCA+AGG | - | chr4_2:68643920-68643939 | Msa0617940:intron | 45.0% |
| ! | TACCGGTCTTCAAGGGTTTT+TGG | - | chr4_2:68643928-68643947 | Msa0617940:intron | 45.0% |
| !! | TTGGTTTTCAACGCTGTTGG+TGG | - | chr4_2:68643947-68643966 | Msa0617940:intron | 45.0% |
| AAGTGAACCCAAACCTGAAC+CGG | + | chr4_2:68643978-68643997 | None:intergenic | 45.0% | |
| AATGTTGTACCTGAGGGGAA+GGG | + | chr4_2:68644060-68644079 | None:intergenic | 45.0% | |
| CTAGGTTTCAACTGCTGTTG+TGG | - | chr4_2:68644213-68644232 | Msa0617940:CDS | 45.0% | |
| TCTTCTTGAGCACACTGATG+TGG | - | chr4_2:68644267-68644286 | Msa0617940:CDS | 45.0% | |
| ACCTGTTATCTCTGCTGCTA+AGG | - | chr4_2:68644507-68644526 | Msa0617940:CDS | 45.0% | |
| GTTTGAGCCTGCTAGTATGA+TGG | - | chr4_2:68644573-68644592 | Msa0617940:CDS | 45.0% | |
| CACTTAGCCATCATACTAGC+AGG | + | chr4_2:68644583-68644602 | None:intergenic | 45.0% | |
| TGATGGCTAAGTGTGATCCA+AGG | - | chr4_2:68644590-68644609 | Msa0617940:CDS | 45.0% | |
| CTAAGTGTGATCCAAGGCAT+GGG | - | chr4_2:68644596-68644615 | Msa0617940:CDS | 45.0% | |
| GCCATATATTTCCCATGCCT+TGG | + | chr4_2:68644610-68644629 | None:intergenic | 45.0% | |
| !! | CCTTTGGAACAACATCACCA+CGG | + | chr4_2:68644648-68644667 | None:intergenic | 45.0% |
| !! | ACAGCAGCATTGACATCCTT+TGG | + | chr4_2:68644664-68644683 | None:intergenic | 45.0% |
| AAGGATGTCAATGCTGCTGT+TGG | - | chr4_2:68644664-68644683 | Msa0617940:CDS | 45.0% | |
| ! | TGCCCAACTGGTTTCAAATG+TGG | - | chr4_2:68645025-68645044 | Msa0617940:intron | 45.0% |
| CAGTAACAACACTGCTGTTG+CGG | - | chr4_2:68645120-68645139 | Msa0617940:intron | 45.0% | |
| AGAAGATGATGAGGAAGGAG+AGG | - | chr4_2:68645306-68645325 | Msa0617940:CDS | 45.0% | |
| ! | CCCAGCAAGAATTACCGACT+TGG | + | chr4_2:68643413-68643432 | None:intergenic | 50.0% |
| GAACATGGCATTCAGCCTGA+CGG | - | chr4_2:68643447-68643466 | Msa0617940:three_prime_UTR | 50.0% | |
| ! | TGCATCGTGTGCTACTCCAA+CGG | + | chr4_2:68643583-68643602 | None:intergenic | 50.0% |
| GGGTTCGAGATCTACGAAGA+CGG | + | chr4_2:68643655-68643674 | None:intergenic | 50.0% | |
| ! | CGAACTTCATCGATGACGGT+GGG | + | chr4_2:68643675-68643694 | None:intergenic | 50.0% |
| ! | ACGAACTTCATCGATGACGG+TGG | + | chr4_2:68643676-68643695 | None:intergenic | 50.0% |
| GAAGAGTTGTCGGTAGGTAC+CGG | + | chr4_2:68643700-68643719 | None:intergenic | 50.0% | |
| GTTCAGGGTGGAAGAGTTGT+CGG | + | chr4_2:68643710-68643729 | None:intergenic | 50.0% | |
| CACCCTGAACAACTCATCTC+CGG | - | chr4_2:68643720-68643739 | Msa0617940:CDS | 50.0% | |
| TGCCGGAGATGAGTTGTTCA+GGG | + | chr4_2:68643725-68643744 | None:intergenic | 50.0% | |
| TTGCCGGAGATGAGTTGTTC+AGG | + | chr4_2:68643726-68643745 | None:intergenic | 50.0% | |
| GCCGCTAACAATTTCGCTAG+AGG | - | chr4_2:68643753-68643772 | Msa0617940:CDS | 50.0% | |
| TTCGCTAGAGGACACTACAC+TGG | - | chr4_2:68643765-68643784 | Msa0617940:CDS | 50.0% | |
| !! | GTTTTCAACGCTGTTGGTGG+TGG | - | chr4_2:68643950-68643969 | Msa0617940:intron | 50.0% |
| GAATGTTGTACCTGAGGGGA+AGG | + | chr4_2:68644061-68644080 | None:intergenic | 50.0% | |
| TCTTGAGCACACTGATGTGG+CGG | - | chr4_2:68644270-68644289 | Msa0617940:CDS | 50.0% | |
| AAACCTCAACGAGGTGGTGA+GGG | + | chr4_2:68644401-68644420 | None:intergenic | 50.0% | |
| ACCACCTCGTTGAGGTTTGA+TGG | - | chr4_2:68644403-68644422 | Msa0617940:CDS | 50.0% | |
| ACCATCAAACCTCAACGAGG+TGG | + | chr4_2:68644407-68644426 | None:intergenic | 50.0% | |
| AGCACCATCAAACCTCAACG+AGG | + | chr4_2:68644410-68644429 | None:intergenic | 50.0% | |
| ! | GATACGGCACAAGATTGGTC+TGG | + | chr4_2:68644456-68644475 | None:intergenic | 50.0% |
| ACGAGGATACGGCACAAGAT+TGG | + | chr4_2:68644461-68644480 | None:intergenic | 50.0% | |
| GCCTTAGCAGCAGAGATAAC+AGG | + | chr4_2:68644511-68644530 | None:intergenic | 50.0% | |
| TCATGAGCAGCTATCTGTGC+CGG | - | chr4_2:68644534-68644553 | Msa0617940:CDS | 50.0% | |
| AGCAGGCTCAAACACAGCAT+TGG | + | chr4_2:68644566-68644585 | None:intergenic | 50.0% | |
| GCTAAGTGTGATCCAAGGCA+TGG | - | chr4_2:68644595-68644614 | Msa0617940:CDS | 50.0% | |
| !! | GCTTGCTGTTTGATGTACCG+TGG | - | chr4_2:68644628-68644647 | Msa0617940:CDS | 50.0% |
| ! | CCGTGGTGATGTTGTTCCAA+AGG | - | chr4_2:68644645-68644664 | Msa0617940:CDS | 50.0% |
| ATGTATGACAGGTGCCCAAC+TGG | - | chr4_2:68645013-68645032 | Msa0617940:CDS | 50.0% | |
| CAGCTCTTTGCACCTTAGCA+AGG | + | chr4_2:68645090-68645109 | None:intergenic | 50.0% | |
| TAACAACACTGCTGTTGCGG+AGG | - | chr4_2:68645123-68645142 | Msa0617940:intron | 50.0% | |
| GCCTTTGTCCACTGGTATGT+CGG | - | chr4_2:68645193-68645212 | Msa0617940:CDS | 50.0% | |
| ACCGACATACCAGTGGACAA+AGG | + | chr4_2:68645197-68645216 | None:intergenic | 50.0% | |
| GAGAGCAGCAAGATCTTCAC+GGG | + | chr4_2:68645251-68645270 | None:intergenic | 50.0% | |
| CGAGAGCAGCAAGATCTTCA+CGG | + | chr4_2:68645252-68645271 | None:intergenic | 50.0% | |
| TGAGGGAGCAGAAGATGATG+AGG | - | chr4_2:68645297-68645316 | Msa0617940:CDS | 50.0% | |
| GGAGCAGAAGATGATGAGGA+AGG | - | chr4_2:68645301-68645320 | Msa0617940:CDS | 50.0% | |
| TTGCGTACGCATACTGCAAG+AGG | + | chr4_2:68645671-68645690 | None:intergenic | 50.0% | |
| GGTCAAGCCGGAATCCAAGT+CGG | - | chr4_2:68643396-68643415 | Msa0617940:three_prime_UTR | 55.0% | |
| AACCTAGGCATCATGCCGTC+AGG | + | chr4_2:68643465-68643484 | None:intergenic | 55.0% | |
| ! | ATCGTGTGCTACTCCAACGG+AGG | + | chr4_2:68643580-68643599 | None:intergenic | 55.0% |
| AGGGTGGAAGAGTTGTCGGT+AGG | + | chr4_2:68643706-68643725 | None:intergenic | 55.0% | |
| CGGAGATGAGTTGTTCAGGG+TGG | + | chr4_2:68643722-68643741 | None:intergenic | 55.0% | |
| GTTAGCGGCGTCTTCTTTGC+CGG | + | chr4_2:68643742-68643761 | None:intergenic | 55.0% | |
| !! | AACGCTGTTGGTGGTGGAAC+CGG | - | chr4_2:68643956-68643975 | Msa0617940:intron | 55.0% |
| ! | TGGTGGAACCGGTTCAGGTT+TGG | - | chr4_2:68643967-68643986 | Msa0617940:intron | 55.0% |
| ! | GGTGGAACCGGTTCAGGTTT+GGG | - | chr4_2:68643968-68643987 | Msa0617940:intron | 55.0% |
| TACCTGAGGGGAAGGGTAGA+TGG | + | chr4_2:68644053-68644072 | None:intergenic | 55.0% | |
| GGCGGTGCTCTTGGATAATG+AGG | - | chr4_2:68644288-68644307 | Msa0617940:CDS | 55.0% | |
| CAAACCTCAACGAGGTGGTG+AGG | + | chr4_2:68644402-68644421 | None:intergenic | 55.0% | |
| CAGCCTCCTTCAGTTGTTCC+TGG | - | chr4_2:68645058-68645077 | Msa0617940:intron | 55.0% | |
| CCTCCTTCAGTTGTTCCTGG+CGG | - | chr4_2:68645061-68645080 | Msa0617940:intron | 55.0% | |
| TCACCGCCAGGAACAACTGA+AGG | + | chr4_2:68645067-68645086 | None:intergenic | 55.0% | |
| CCAGTGGACAAAGGCTCTCT+TGG | + | chr4_2:68645188-68645207 | None:intergenic | 55.0% | |
| CCAAGAGAGCCTTTGTCCAC+TGG | - | chr4_2:68645185-68645204 | Msa0617940:CDS | 55.0% | |
| TGTCCACTGGTATGTCGGTG+AGG | - | chr4_2:68645198-68645217 | Msa0617940:CDS | 55.0% | |
| GTCCACTGGTATGTCGGTGA+GGG | - | chr4_2:68645199-68645218 | Msa0617940:CDS | 55.0% | |
| ! | TCGGTGAGGGCATGGAAGAA+GGG | - | chr4_2:68645212-68645231 | Msa0617940:CDS | 55.0% |
| AGCCTGACGGCATGATGCCT+AGG | - | chr4_2:68643460-68643479 | Msa0617940:three_prime_UTR | 60.0% | |
| AGATCTACGAAGACGGCGCG+TGG | + | chr4_2:68643648-68643667 | None:intergenic | 60.0% | |
| !! | GTTGGTGGTGGAACCGGTTC+AGG | - | chr4_2:68643962-68643981 | Msa0617940:intron | 60.0% |
| CACCATCTACCCTTCCCCTC+AGG | - | chr4_2:68644048-68644067 | Msa0617940:intron | 60.0% | |
| CACTGATGTGGCGGTGCTCT+TGG | - | chr4_2:68644279-68644298 | Msa0617940:CDS | 60.0% | |
| CATCCCTCACCACCTCGTTG+AGG | - | chr4_2:68644395-68644414 | Msa0617940:CDS | 60.0% | |
| CCGCCAGGAACAACTGAAGG+AGG | + | chr4_2:68645064-68645083 | None:intergenic | 60.0% | |
| TCCTGGCGGTGACCTTGCTA+AGG | - | chr4_2:68645075-68645094 | Msa0617940:intron | 60.0% | |
| ACCTTAGCAAGGTCACCGCC+AGG | + | chr4_2:68645079-68645098 | None:intergenic | 60.0% | |
| TGCCCTCACCGACATACCAG+TGG | + | chr4_2:68645204-68645223 | None:intergenic | 60.0% | |
| CTGGTATGTCGGTGAGGGCA+TGG | - | chr4_2:68645204-68645223 | Msa0617940:CDS | 60.0% | |
| ! | GTCGGTGAGGGCATGGAAGA+AGG | - | chr4_2:68645211-68645230 | Msa0617940:CDS | 60.0% |
| ! | CGGTGAGGGCATGGAAGAAG+GGG | - | chr4_2:68645213-68645232 | Msa0617940:CDS | 60.0% |
| GGCGCGTGGAACGTGTTTGC+CGG | + | chr4_2:68643634-68643653 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 68643209 | 68645701 | 68643209 | ID=Msa0617940;Name=Msa0617940 |
| chr4_2 | mRNA | 68643209 | 68645701 | 68643209 | ID=Msa0617940-mRNA-1;Parent=Msa0617940;Name=Msa0617940-mRNA-1;_AED=0.07;_eAED=0.07;_QI=160|1|1|1|1|1|5|365|449 |
| chr4_2 | exon | 68643209 | 68643886 | 68643209 | ID=Msa0617940-mRNA-1:exon:19750;Parent=Msa0617940-mRNA-1 |
| chr4_2 | exon | 68644185 | 68644693 | 68644185 | ID=Msa0617940-mRNA-1:exon:19749;Parent=Msa0617940-mRNA-1 |
| chr4_2 | exon | 68644841 | 68645040 | 68644841 | ID=Msa0617940-mRNA-1:exon:19748;Parent=Msa0617940-mRNA-1 |
| chr4_2 | exon | 68645124 | 68645338 | 68645124 | ID=Msa0617940-mRNA-1:exon:19747;Parent=Msa0617940-mRNA-1 |
| chr4_2 | exon | 68645429 | 68645701 | 68645429 | ID=Msa0617940-mRNA-1:exon:19746;Parent=Msa0617940-mRNA-1 |
| chr4_2 | five_prime_UTR | 68645542 | 68645701 | 68645542 | ID=Msa0617940-mRNA-1:five_prime_utr;Parent=Msa0617940-mRNA-1 |
| chr4_2 | CDS | 68645429 | 68645541 | 68645429 | ID=Msa0617940-mRNA-1:cds;Parent=Msa0617940-mRNA-1 |
| chr4_2 | CDS | 68645124 | 68645338 | 68645124 | ID=Msa0617940-mRNA-1:cds;Parent=Msa0617940-mRNA-1 |
| chr4_2 | CDS | 68644841 | 68645040 | 68644841 | ID=Msa0617940-mRNA-1:cds;Parent=Msa0617940-mRNA-1 |
| chr4_2 | CDS | 68644185 | 68644693 | 68644185 | ID=Msa0617940-mRNA-1:cds;Parent=Msa0617940-mRNA-1 |
| chr4_2 | CDS | 68643574 | 68643886 | 68643574 | ID=Msa0617940-mRNA-1:cds;Parent=Msa0617940-mRNA-1 |
| chr4_2 | three_prime_UTR | 68643209 | 68643573 | 68643209 | ID=Msa0617940-mRNA-1:three_prime_utr;Parent=Msa0617940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
