AlfalfaGEDB | Msa0617940

M. sativa cultivar zhongmu-4 / Msa0617940

KEGG: K07374
GO: -
PFAM: PF00091.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617940	XP_003629736.1	100.000	449	0	0	1	449	1	449	0.0	936

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617940	sp\|B9DHQ0\|TBA5_ARATH	98.000	450	8	1	1	449	1	450	0.0	921

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001800	Msa0617940	0.809325	2.001279e-50	-8.615850e-47
Msa0002420	Msa0617940	0.808772	2.628456e-50	-8.615850e-47
Msa0040790	Msa0617940	0.852261	5.183737e-61	-8.615850e-47
Msa0108630	Msa0617940	0.813185	2.909474e-51	-8.615850e-47
Msa0124910	Msa0617940	0.809940	1.475855e-50	-8.615850e-47
Msa0143590	Msa0617940	0.808932	2.429349e-50	-8.615850e-47
Msa0164290	Msa0617940	0.810134	1.340573e-50	-8.615850e-47
Msa0183710	Msa0617940	0.806550	7.791306e-50	-8.615850e-47
Msa0184500	Msa0617940	0.863076	3.222254e-64	-8.615850e-47
Msa0195230	Msa0617940	0.821872	3.204303e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617940	MtrunA17_Chr8g0378821	100.000	449	0	0	1	449	1	449	0.0	936
Msa0617940	MtrunA17_Chr7g0253411	94.989	439	22	0	1	439	1	439	0.0	857
Msa0617940	MtrunA17_Chr1g0206881	91.111	450	39	1	1	449	1	450	0.0	840
Msa0617940	MtrunA17_Chr4g0054511	92.711	439	32	0	1	439	1	439	0.0	839
Msa0617940	MtrunA17_Chr3g0140821	92.922	438	31	0	1	438	1	438	0.0	838
Msa0617940	MtrunA17_Chr6g0461281	87.333	450	54	2	1	449	1	448	0.0	799
Msa0617940	MtrunA17_Chr2g0300671	71.889	434	117	2	1	434	1	429	0.0	632
Msa0617940	MtrunA17_Chr2g0300491	71.429	434	119	2	1	434	1	429	0.0	632
Msa0617940	MtrunA17_Chr8g0393021	41.425	449	252	3	1	449	1	438	1.42e-126	374
Msa0617940	MtrunA17_Chr4g0051631	41.935	434	242	2	1	434	1	424	1.72e-126	374

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617940	AT5G19780.1	98.000	450	8	1	1	449	1	450	0.0	921
Msa0617940	AT5G19770.1	98.000	450	8	1	1	449	1	450	0.0	921
Msa0617940	AT1G64740.1	93.563	435	28	0	1	435	1	435	0.0	836
Msa0617940	AT1G50010.1	92.874	435	31	0	1	435	1	435	0.0	834
Msa0617940	AT1G04820.1	92.874	435	31	0	1	435	1	435	0.0	834
Msa0617940	AT4G14960.2	92.644	435	32	0	1	435	1	435	0.0	832
Msa0617940	AT4G14960.1	87.961	407	42	1	1	407	1	400	0.0	733
Msa0617940	AT1G75780.1	41.475	434	245	2	1	434	1	425	7.44e-128	378
Msa0617940	AT5G62690.1	41.935	434	242	2	1	434	1	424	2.10e-126	374
Msa0617940	AT5G62700.1	41.935	434	242	2	1	434	1	424	2.10e-126	374

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Find 142 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACAATACGAGTGGA+GGG	0.596182	4_2:+68643471	None:intergenic
AAACCTCAACGAGGTGGTGA+GGG	0.569782	4_2:+68644490	None:intergenic
AAATAAAAGAACAATACGAG+TGG	0.663738	4_2:+68643467	None:intergenic
AAATTGGCTGATAACTGTAC+CGG	0.586586	4_2:-68644977	Msa0617940:CDS
AACACAGCATTGGTAATTTC+CGG	0.327913	4_2:+68644335	None:intergenic
AACACATTCTTCAGCGAAAC+TGG	0.328754	4_2:-68645282	Msa0617940:CDS
AACCTAGGCATCATGCCGTC+AGG	0.480667	4_2:+68645426	None:intergenic
AACGCTGTTGGTGGTGGAAC+CGG	0.370166	4_2:-68644932	Msa0617940:CDS
AAGGATGTCAATGCTGCTGT+TGG	0.630667	4_2:-68644224	Msa0617940:CDS
AAGTGAACCCAAACCTGAAC+CGG	0.452878	4_2:+68644913	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTCGAAATTAGGGTTA+GGG	+	chr4_2:68643808-68643827	None:intergenic	30.0%
AGCAAGAAATCTCGAAATTA+GGG	+	chr4_2:68643814-68643833	None:intergenic	30.0%
AAGCAAGAAATCTCGAAATT+AGG	+	chr4_2:68643815-68643834	None:intergenic	30.0%
TATGGAAAGAAATCCAAACT+TGG	-	chr4_2:68644022-68644041	Msa0617940:intron	30.0%
GATTGATGTATAGATCATAG+TGG	-	chr4_2:68644145-68644164	Msa0617940:intron	30.0%
ATGAAATGAATACGAGGATA+CGG	+	chr4_2:68644472-68644491	None:intergenic	30.0%
CCTTATAAAATATGCAGCTA+CGG	+	chr4_2:68644806-68644825	None:intergenic	30.0%
GAGAAAGATTATGAAGAAGT+TGG	-	chr4_2:68645271-68645290	Msa0617940:CDS	30.0%
TGATTGTTTCAAGCAAAAAG+AGG	-	chr4_2:68645375-68645394	Msa0617940:intron	30.0%
GATTGTTTCAAGCAAAAAGA+GGG	-	chr4_2:68645376-68645395	Msa0617940:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	68643209	68645701	68643209	ID=Msa0617940;Name=Msa0617940
chr4_2	mRNA	68643209	68645701	68643209	ID=Msa0617940-mRNA-1;Parent=Msa0617940;Name=Msa0617940-mRNA-1;_AED=0.07;_eAED=0.07;_QI=160\|1\|1\|1\|1\|1\|5\|365\|449
chr4_2	exon	68643209	68643886	68643209	ID=Msa0617940-mRNA-1:exon:19750;Parent=Msa0617940-mRNA-1
chr4_2	exon	68644185	68644693	68644185	ID=Msa0617940-mRNA-1:exon:19749;Parent=Msa0617940-mRNA-1
chr4_2	exon	68644841	68645040	68644841	ID=Msa0617940-mRNA-1:exon:19748;Parent=Msa0617940-mRNA-1
chr4_2	exon	68645124	68645338	68645124	ID=Msa0617940-mRNA-1:exon:19747;Parent=Msa0617940-mRNA-1
chr4_2	exon	68645429	68645701	68645429	ID=Msa0617940-mRNA-1:exon:19746;Parent=Msa0617940-mRNA-1
chr4_2	five_prime_UTR	68645542	68645701	68645542	ID=Msa0617940-mRNA-1:five_prime_utr;Parent=Msa0617940-mRNA-1
chr4_2	CDS	68645429	68645541	68645429	ID=Msa0617940-mRNA-1:cds;Parent=Msa0617940-mRNA-1
chr4_2	CDS	68645124	68645338	68645124	ID=Msa0617940-mRNA-1:cds;Parent=Msa0617940-mRNA-1
chr4_2	CDS	68644841	68645040	68644841	ID=Msa0617940-mRNA-1:cds;Parent=Msa0617940-mRNA-1
chr4_2	CDS	68644185	68644693	68644185	ID=Msa0617940-mRNA-1:cds;Parent=Msa0617940-mRNA-1
chr4_2	CDS	68643574	68643886	68643574	ID=Msa0617940-mRNA-1:cds;Parent=Msa0617940-mRNA-1
chr4_2	three_prime_UTR	68643209	68643573	68643209	ID=Msa0617940-mRNA-1:three_prime_utr;Parent=Msa0617940-mRNA-1

Gene Sequence

>Msa0617940

ATGAGAGAAATTATCAGTATTCACATCGGTCAAGCCGGAATCCAAGTCGGTAATTCTTGCTGGGAGCTTTACTGTCTCGAACATGGCATTCAGCCTGACGGCATGATGCCTAGTGATTCCTCCGTTGGAGTAGCACACGATGCATTCAACACATTCTTCAGCGAAACTGGTTCCGGCAAACACGTTCCACGCGCCGTCTTCGTAGATCTCGAACCCACCGTCATCGATGAAGTTCGTTCCGGTACCTACCGACAACTCTTCCACCCTGAACAACTCATCTCCGGCAAAGAAGACGCCGCTAACAATTTCGCTAGAGGACACTACACTGTTGGCAAGGAAATTGTAGATCTGTGTTTGGATCGTGTTAGGAAATTGGCTGATAACTGTACCGGTCTTCAAGGGTTTTTGGTTTTCAACGCTGTTGGTGGTGGAACCGGTTCAGGTTTGGGTTCACTTCTTTTGGAACGTCTTTCTGTTGATTATGGAAAGAAATCCAAACTTGGATTCACCATCTACCCTTCCCCTCAGGTTTCAACTGCTGTTGTGGAGCCATACAACAGTGTTCTATCGACACATTCTCTTCTTGAGCACACTGATGTGGCGGTGCTCTTGGATAATGAGGCGATCTATGACATTTGTAGGAGATCTCTTGATATTGAGAGGCCAACTTATACCAACTTGAACAGGTTGATATCACAGATCATATCATCCCTCACCACCTCGTTGAGGTTTGATGGTGCTATCAATGTTGATATTACTGAGTTCCAGACCAATCTTGTGCCGTATCCTCGTATTCATTTCATGCTTTCGTCATATGCACCTGTTATCTCTGCTGCTAAGGCTTATCATGAGCAGCTATCTGTGCCGGAAATTACCAATGCTGTGTTTGAGCCTGCTAGTATGATGGCTAAGTGTGATCCAAGGCATGGGAAATATATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTTCCAAAGGATGTCAATGCTGCTGTTGGCACCATCAAAACAAAGAGGACTGTTCAATTTGTTGACTGGTGCCCAACTGGTTTCAAATGTGGTATCAACTATCAGCCTCCTTCAGTTGTTCCTGGCGGTGACCTTGCTAAGGTGCAAAGAGCTGTGTGTATGATCAGTAACAACACTGCTGTTGCGGAGGTCTTCTCCCGCATTGATCACAAGTTCGATCTGATGTATGCCAAGAGAGCCTTTGTCCACTGGTATGTCGGTGAGGGCATGGAAGAAGGGGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCTCTCGAGAAAGATTATGAAGAAGTTGGTGCTGAGGGAGCAGAAGATGATGAGGAAGGAGAGGATTATTGA

Protein sequence

>Msa0617940

MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDSSVGVAHDAFNTFFSETGSGKHVPRAVFVDLEPTVIDEVRSGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGAEDDEEGEDY*