AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647440 MtrunA17_Chr4g0038891 98.324 179 3 0 1 179 1 179 4.55e-132 367
Msa0647440 MtrunA17_Chr5g0396451 85.311 177 26 0 1 177 1 177 1.04e-114 323
Msa0647440 MtrunA17_Chr1g0199951 66.871 163 53 1 18 179 27 189 2.61e-75 224
Msa0647440 MtrunA17_Chr4g0060351 46.853 143 75 1 30 171 2 144 2.56e-40 134
Msa0647440 MtrunA17_Chr8g0362321 45.517 145 78 1 30 173 2 146 4.22e-40 133
Msa0647440 MtrunA17_Chr2g0316201 46.094 128 69 0 35 162 8 135 1.52e-35 121
Msa0647440 MtrunA17_Chr2g0316211 45.669 127 69 0 36 162 9 135 8.61e-35 119
Msa0647440 MtrunA17_Chr4g0037011 44.715 123 68 0 35 157 4 126 5.98e-34 117
Msa0647440 MtrunA17_Chr3g0108261 44.355 124 69 0 35 158 4 127 1.04e-33 116
Msa0647440 MtrunA17_Chr8g0369311 42.537 134 77 0 29 162 54 187 1.10e-33 118
Msa0647440 MtrunA17_Chr5g0432831 44.355 124 69 0 35 158 4 127 1.16e-33 116
Msa0647440 MtrunA17_Chr7g0275361 43.548 124 70 0 35 158 4 127 3.04e-33 115
Msa0647440 MtrunA17_Chr1g0154011 42.969 128 73 0 35 162 4 131 7.24e-33 114
Msa0647440 MtrunA17_Chr4g0031181 36.641 131 69 2 57 173 30 160 1.35e-26 99.4
Msa0647440 MtrunA17_Chr8g0378601 38.710 124 76 0 35 158 25 148 3.37e-26 98.2
Msa0647440 MtrunA17_Chr2g0328001 36.641 131 69 2 57 173 30 160 9.94e-25 94.4
Msa0647440 MtrunA17_Chr3g0131871 37.778 135 80 3 36 168 6 138 4.84e-24 93.2
Msa0647440 MtrunA17_Chr3g0139901 38.393 112 68 1 47 157 20 131 2.56e-23 90.5
Msa0647440 MtrunA17_Chr4g0053191 36.620 142 82 3 36 169 8 149 1.62e-21 85.9
Msa0647440 MtrunA17_Chr5g0401831 35.616 146 86 3 36 173 8 153 1.96e-21 85.5
Msa0647440 MtrunA17_Chr4g0059291 35.200 125 76 4 35 157 6 127 1.51e-19 81.3
Msa0647440 MtrunA17_Chr5g0403591 32.090 134 87 2 36 169 33 162 9.07e-18 76.6
Msa0647440 MtrunA17_Chr8g0348701 33.600 125 78 4 35 157 6 127 1.87e-17 75.9
Msa0647440 MtrunA17_Chr7g0254701 30.968 155 99 2 18 171 3 150 2.62e-17 77.0
Msa0647440 MtrunA17_Chr8g0387131 33.333 129 81 4 31 157 2 127 6.36e-17 74.3
Msa0647440 MtrunA17_Chr8g0372391 36.364 99 61 2 36 133 19 116 1.77e-15 70.1
Msa0647440 MtrunA17_Chr5g0404931 34.906 106 67 2 30 134 13 117 3.04e-14 67.0
Msa0647440 MtrunA17_Chr4g0068301 29.530 149 87 5 33 174 11 148 2.60e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647440 AT3G20060.1 80.791 177 30 1 1 173 1 177 1.86e-101 290
Msa0647440 AT1G50490.1 81.111 180 31 1 1 177 1 180 3.25e-97 279
Msa0647440 AT3G20060.2 86.765 136 18 0 42 177 1 136 3.12e-87 252
Msa0647440 AT2G02760.1 46.154 143 76 1 30 171 2 144 1.85e-39 132
Msa0647440 AT2G02760.2 46.154 143 76 1 30 171 2 144 1.85e-39 132
Msa0647440 AT2G02760.4 46.154 143 76 1 30 171 2 144 1.85e-39 132
Msa0647440 AT2G02760.3 46.154 143 76 1 30 171 2 144 1.85e-39 132
Msa0647440 AT1G14400.1 46.154 143 76 1 30 171 2 144 1.95e-39 132
Msa0647440 AT1G14400.2 46.154 143 76 1 30 171 2 144 1.95e-39 132
Msa0647440 AT5G62540.1 46.479 142 74 2 30 169 2 143 5.46e-37 125
Msa0647440 AT1G78870.2 46.094 128 69 0 35 162 8 135 2.21e-35 121
Msa0647440 AT1G16890.2 45.312 128 70 0 35 162 8 135 8.04e-35 120
Msa0647440 AT5G56150.1 45.161 124 68 0 35 158 4 127 4.91e-34 118
Msa0647440 AT1G16890.3 46.923 130 67 1 35 162 15 144 5.28e-34 118
Msa0647440 AT1G64230.2 44.355 124 69 0 35 158 4 127 1.84e-33 116
Msa0647440 AT1G64230.1 44.355 124 69 0 35 158 4 127 1.84e-33 116
Msa0647440 AT2G16740.1 41.176 136 79 1 35 169 4 139 2.29e-33 116
Msa0647440 AT4G27960.1 41.860 129 75 0 35 163 4 132 2.52e-33 116
Msa0647440 AT3G08700.2 42.029 138 78 2 35 170 4 141 6.31e-33 115
Msa0647440 AT3G08700.1 42.029 138 78 2 35 170 4 141 6.31e-33 115
Msa0647440 AT3G08690.2 43.548 124 70 0 35 158 4 127 6.76e-33 115
Msa0647440 AT3G08690.1 43.548 124 70 0 35 158 4 127 6.76e-33 115
Msa0647440 AT5G53300.2 41.085 129 76 0 35 163 4 132 1.11e-32 114
Msa0647440 AT5G53300.4 41.085 129 76 0 35 163 4 132 1.11e-32 114
Msa0647440 AT5G53300.1 41.085 129 76 0 35 163 4 132 1.11e-32 114
Msa0647440 AT5G41700.5 42.742 124 71 0 35 158 4 127 1.46e-32 114
Msa0647440 AT5G41700.2 42.742 124 71 0 35 158 4 127 1.46e-32 114
Msa0647440 AT5G41700.1 42.742 124 71 0 35 158 4 127 1.46e-32 114
Msa0647440 AT4G27960.2 41.860 129 75 0 35 163 34 162 4.08e-32 114
Msa0647440 AT5G41700.4 43.200 125 70 1 35 158 4 128 7.01e-31 110
Msa0647440 AT1G64230.3 41.353 133 69 1 35 158 4 136 1.97e-30 108
Msa0647440 AT1G64230.5 46.602 103 55 0 56 158 67 169 1.31e-29 107
Msa0647440 AT1G64230.4 46.602 103 55 0 56 158 67 169 1.31e-29 107
Msa0647440 AT1G16890.1 50.526 95 47 0 68 162 8 102 4.80e-29 104
Msa0647440 AT1G78870.4 50.526 95 47 0 68 162 8 102 5.23e-29 104
Msa0647440 AT1G78870.3 45.714 105 57 0 35 139 8 112 5.86e-28 101
Msa0647440 AT1G78870.1 50.000 96 47 1 68 162 8 103 1.30e-27 100
Msa0647440 AT3G13550.1 37.500 136 85 0 35 170 39 174 6.25e-27 100
Msa0647440 AT1G36340.2 40.876 137 79 2 26 162 3 137 6.09e-26 97.4
Msa0647440 AT1G36340.1 40.876 137 79 2 26 162 3 137 6.09e-26 97.4
Msa0647440 AT5G50870.1 41.935 124 67 3 34 155 4 124 1.12e-25 97.8
Msa0647440 AT5G50870.2 41.935 124 67 3 34 155 4 124 1.40e-25 97.8
Msa0647440 AT5G56150.2 43.000 100 57 0 35 134 4 103 1.78e-25 95.1
Msa0647440 AT5G41700.3 40.385 104 62 0 35 138 4 107 2.55e-24 93.2
Msa0647440 AT3G13550.2 39.640 111 67 0 35 145 39 149 3.61e-24 93.2
Msa0647440 AT3G55380.1 35.115 131 71 2 57 173 31 161 8.80e-24 92.4
Msa0647440 AT5G53300.3 40.404 99 59 0 35 133 4 102 9.77e-24 90.5
Msa0647440 AT5G59300.1 35.115 131 71 2 57 173 30 160 9.86e-24 92.0
Msa0647440 AT3G46460.1 35.878 131 70 2 57 173 30 160 1.70e-23 91.7
Msa0647440 AT5G25760.1 38.739 111 67 1 48 157 21 131 3.45e-23 90.5
Msa0647440 AT5G25760.2 38.739 111 67 1 48 157 21 131 3.45e-23 90.5
Msa0647440 AT1G63800.1 37.600 125 73 4 35 157 6 127 5.89e-21 85.5
Msa0647440 AT3G57870.1 36.620 142 82 3 36 169 9 150 1.62e-20 83.6
Msa0647440 AT5G41340.1 36.800 125 74 4 35 157 6 127 2.16e-20 84.0
Msa0647440 AT2G18600.1 34.959 123 77 3 36 157 35 155 5.86e-19 80.1
Msa0647440 AT2G18600.2 34.959 123 77 3 36 157 35 155 5.86e-19 80.1
Msa0647440 AT1G63800.2 40.217 92 53 2 68 157 21 112 8.69e-19 79.3
Msa0647440 AT2G46030.5 35.200 125 76 4 35 157 6 127 1.34e-18 79.3
Msa0647440 AT2G46030.1 35.200 125 76 4 35 157 6 127 1.34e-18 79.3
Msa0647440 AT5G05080.2 33.099 142 93 2 32 172 10 150 7.36e-18 78.6
Msa0647440 AT5G05080.3 33.099 142 93 2 32 172 10 150 7.36e-18 78.6
Msa0647440 AT5G05080.1 33.099 142 93 2 32 172 10 150 7.36e-18 78.6
Msa0647440 AT5G05080.4 33.099 142 93 2 32 172 10 150 7.36e-18 78.6
Msa0647440 AT2G46030.3 35.200 125 76 4 35 157 78 199 9.40e-18 78.6
Msa0647440 AT4G36800.2 31.148 122 83 1 36 157 34 154 5.57e-17 75.1
Msa0647440 AT4G36800.1 31.148 122 83 1 36 157 34 154 5.57e-17 75.1
Msa0647440 AT3G55380.2 27.907 172 75 4 51 173 24 195 2.04e-16 73.9
Msa0647440 AT3G46460.3 33.333 111 60 2 77 173 8 118 5.41e-16 70.9
Msa0647440 AT3G46460.2 33.333 111 60 2 77 173 8 118 5.41e-16 70.9
Msa0647440 AT2G46030.4 35.644 101 63 2 59 157 30 130 7.57e-16 72.0
Msa0647440 AT2G46030.2 35.644 101 63 2 59 157 30 130 7.57e-16 72.0
Msa0647440 AT5G41340.2 40.000 85 49 2 75 157 8 92 8.47e-16 71.2
Msa0647440 AT3G24515.1 37.391 115 63 4 68 173 51 165 1.00e-15 74.3
Msa0647440 AT3G24515.3 37.391 115 63 4 68 173 76 190 1.45e-15 73.9
Msa0647440 AT1G45050.1 33.929 112 72 2 24 134 7 117 6.55e-15 68.9
Msa0647440 AT1G75440.1 34.234 111 71 2 24 133 7 116 2.73e-14 67.4
Msa0647440 AT5G42990.1 33.929 112 72 2 24 134 7 117 2.87e-14 67.4
Msa0647440 AT4G36410.1 35.354 99 62 2 36 133 19 116 3.98e-14 67.0
Msa0647440 AT2G32790.1 38.017 121 72 2 53 173 51 168 4.83e-14 67.0
Msa0647440 AT3G17000.1 32.743 113 67 3 34 141 13 121 7.26e-12 62.8

Find 52 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACTTTAGGAGCCTTAAA+AGG 0.184751 4_3:-53548661 None:intergenic
ATGGATCACCTAAAACTAAA+TGG 0.199370 4_3:-53549383 None:intergenic
TTGTTTGTTTATAGGATAAA+TGG 0.261888 4_3:+53548833 Msa0647440:intron
CATCCCAATGTTGATCTTCA+TGG 0.269716 4_3:+53548703 Msa0647440:CDS
TCAGAGCATAACAAAATAAA+TGG 0.271985 4_3:-53549402 None:intergenic
GCCTTCAAACACTGTATCTT+TGG 0.285480 4_3:-53548599 None:intergenic
AAGAAGAAGAAATGAAAATA+TGG 0.311253 4_3:-53547221 None:intergenic
CTGTCCATCCAAAGTCTTCT+TGG 0.336173 4_3:+53548886 Msa0647440:CDS
TGTCAGATGAGCGGTGATTC+TGG 0.340319 4_3:+53548517 Msa0647440:intron
GTAGTTTCAAACTTGACTTT+AGG 0.379535 4_3:-53548673 None:intergenic
TTGTGGAAAGGAACAATAAC+AGG 0.394846 4_3:+53548574 Msa0647440:CDS
ATCCACAAGCAGCACAGCTT+TGG 0.411990 4_3:+53549122 Msa0647440:CDS
GCCTTAAAAGGGTAATCATT+AGG 0.415557 4_3:-53548649 None:intergenic
TATATGCTTGGACATACTTC+AGG 0.420859 4_3:+53548729 Msa0647440:CDS
AGCATCGGTGTTCCCATTGA+TGG 0.425940 4_3:-53547281 None:intergenic
GTCTGAATTGATGTCTTTGA+TGG 0.426742 4_3:+53548273 Msa0647440:CDS
CTCCAAAGCTGTGCTGCTTG+TGG 0.432715 4_3:-53549124 None:intergenic
ATTCCACCTCTGTTCTCAAA+AGG 0.440278 4_3:+53547359 Msa0647440:CDS
TGTGCTGCTTGTGGATTTAG+TGG 0.440911 4_3:-53549115 None:intergenic
TTTAGTGGTGAACTAATGTT+TGG 0.452232 4_3:-53549100 None:intergenic
GGTGAATTGTGAAGAGGGTT+TGG 0.460402 4_3:-53547182 None:intergenic
GTCTACCTCCAAGAAGACTT+TGG 0.472732 4_3:-53548894 None:intergenic
AAGAATATGTTGTCTTCCTC+AGG 0.473205 4_3:-53548553 None:intergenic
TTATCATTCAAGTTGGAGAA+AGG 0.477070 4_3:+53549320 Msa0647440:intron
TGGATCACCTAAAACTAAAT+GGG 0.480653 4_3:-53549382 None:intergenic
TGACTTTAGGAGCCTTAAAA+GGG 0.487045 4_3:-53548660 None:intergenic
ATCAACATTGGGATGGAAGC+AGG 0.492019 4_3:-53548695 None:intergenic
TTATACAGATTACAGAAAGA+TGG 0.493470 4_3:+53549243 Msa0647440:intron
GAAAATCAAATGAATCGAAT+CGG 0.506136 4_3:-53547251 None:intergenic
TTGCCATGAAGATCAACATT+GGG 0.507321 4_3:-53548706 None:intergenic
TCTTCATGGCAATATATGCT+TGG 0.513262 4_3:+53548717 Msa0647440:CDS
AACAATGGGTTGAGCAGCAT+CGG 0.515118 4_3:-53547296 None:intergenic
GAGGTGGAATCAACGGACTT+AGG 0.525977 4_3:-53547346 None:intergenic
AAGATGGTGAATTGTGAAGA+GGG 0.533917 4_3:-53547187 None:intergenic
ACCTCCAAGAAGACTTTGGA+TGG 0.537043 4_3:-53548890 None:intergenic
TCCATCCAAAGTCTTCTTGG+AGG 0.548893 4_3:+53548889 Msa0647440:CDS
ACCAAAGATACAGTGTTTGA+AGG 0.558474 4_3:+53548598 Msa0647440:CDS
GAAGATGGTGAATTGTGAAG+AGG 0.560392 4_3:-53547188 None:intergenic
GACAACATATTCTTGTGGAA+AGG 0.561762 4_3:+53548562 Msa0647440:CDS
ACGGACTTAGGAGGAGGAAG+AGG 0.570689 4_3:-53547334 None:intergenic
ATTGACTAAGCAGTAGCACT+TGG 0.574962 4_3:-53549286 None:intergenic
GAGAACAGAGGTGGAATCAA+CGG 0.579252 4_3:-53547353 None:intergenic
ATTGCCATGAAGATCAACAT+TGG 0.588583 4_3:-53548707 None:intergenic
TATGGAAGTGAAGAAGAAGA+TGG 0.594221 4_3:-53547203 None:intergenic
GAATCAACGGACTTAGGAGG+AGG 0.597125 4_3:-53547340 None:intergenic
AGGAAGACAACATATTCTTG+TGG 0.600574 4_3:+53548557 Msa0647440:CDS
GTTGATTTAAAATGAAACGA+TGG 0.610150 4_3:-53547160 None:intergenic
GTGGAATCAACGGACTTAGG+AGG 0.610762 4_3:-53547343 None:intergenic
CAGCTTTGGAGCAATCAAGA+AGG 0.619795 4_3:+53549136 Msa0647440:CDS
TACAGATTACAGAAAGATGG+TGG 0.634223 4_3:+53549246 Msa0647440:intron
CATGAAGATCAACATTGGGA+TGG 0.643434 4_3:-53548702 None:intergenic
TGATTGGACTGTCAGATGAG+CGG 0.704407 4_3:+53548508 Msa0647440:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAATGTATAAATAA+AGG + chr4_3:53547805-53547824 Msa0647440:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4_3:53547806-53547825 Msa0647440:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr4_3:53547805-53547824 Msa0647440:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4_3:53547806-53547825 Msa0647440:intron 10.0%
!! TAAAAGAGAGATTTAATAAT+AGG - chr4_3:53547396-53547415 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4_3:53547807-53547826 Msa0647440:intron 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr4_3:53547870-53547889 Msa0647440:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr4_3:53547871-53547890 Msa0647440:intron 15.0%
!! ACAAATGACAATAATAATAA+GGG - chr4_3:53548161-53548180 None:intergenic 15.0%
!! TACAAATGACAATAATAATA+AGG - chr4_3:53548162-53548181 None:intergenic 15.0%
!! TTATTTGTTTGTTTGTTTAT+AGG + chr4_3:53548825-53548844 Msa0647440:intron 15.0%
!! TAAAAAGTTAAAAAAGAGTT+AGG - chr4_3:53549069-53549088 None:intergenic 15.0%
!! TTGTTAAAAGATTTCAAAAA+CGG - chr4_3:53549434-53549453 None:intergenic 15.0%
!! TAAAAGAGAGATTTAATAAT+AGG - chr4_3:53547396-53547415 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4_3:53547807-53547826 Msa0647440:intron 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr4_3:53547870-53547889 Msa0647440:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr4_3:53547871-53547890 Msa0647440:intron 15.0%
!! ACAAATGACAATAATAATAA+GGG - chr4_3:53548161-53548180 None:intergenic 15.0%
!! TACAAATGACAATAATAATA+AGG - chr4_3:53548162-53548181 None:intergenic 15.0%
!! TTATTTGTTTGTTTGTTTAT+AGG + chr4_3:53548825-53548844 Msa0647440:intron 15.0%
!! TAAAAAGTTAAAAAAGAGTT+AGG - chr4_3:53549069-53549088 None:intergenic 15.0%
!! TTGTTAAAAGATTTCAAAAA+CGG - chr4_3:53549434-53549453 None:intergenic 15.0%
!! AAGAAGAAGAAATGAAAATA+TGG - chr4_3:53547224-53547243 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr4_3:53547940-53547959 Msa0647440:intron 20.0%
!! TTGTTTGTTTATAGGATAAA+TGG + chr4_3:53548833-53548852 Msa0647440:intron 20.0%
!!! ACACTAATCTAATTTGTATA+CGG - chr4_3:53549031-53549050 None:intergenic 20.0%
!! AAGAAGAAGAAATGAAAATA+TGG - chr4_3:53547224-53547243 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr4_3:53547940-53547959 Msa0647440:intron 20.0%
!! TTGTTTGTTTATAGGATAAA+TGG + chr4_3:53548833-53548852 Msa0647440:intron 20.0%
!!! ACACTAATCTAATTTGTATA+CGG - chr4_3:53549031-53549050 None:intergenic 20.0%
! GAAAATCAAATGAATCGAAT+CGG - chr4_3:53547254-53547273 None:intergenic 25.0%
!!! TTCGATTCATTTGATTTTCA+TGG + chr4_3:53547255-53547274 Msa0647440:exon 25.0%
! GAACAAATGATTGTGATAAA+TGG + chr4_3:53547693-53547712 Msa0647440:intron 25.0%
! AAAGTGGAATATATTGTACT+GGG + chr4_3:53547830-53547849 Msa0647440:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr4_3:53547917-53547936 Msa0647440:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr4_3:53547918-53547937 Msa0647440:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr4_3:53547939-53547958 Msa0647440:intron 25.0%
!!! TGTTTTGCATTTTTTGTGAT+TGG + chr4_3:53548492-53548511 Msa0647440:intron 25.0%
! TTATACAGATTACAGAAAGA+TGG + chr4_3:53549243-53549262 Msa0647440:intron 25.0%
!!! ATGAAAACCCATTTAGTTTT+AGG + chr4_3:53549375-53549394 Msa0647440:three_prime_UTR 25.0%
! TCAGAGCATAACAAAATAAA+TGG - chr4_3:53549405-53549424 None:intergenic 25.0%
! GAAAATCAAATGAATCGAAT+CGG - chr4_3:53547254-53547273 None:intergenic 25.0%
!!! TTCGATTCATTTGATTTTCA+TGG + chr4_3:53547255-53547274 Msa0647440:exon 25.0%
! GAACAAATGATTGTGATAAA+TGG + chr4_3:53547693-53547712 Msa0647440:intron 25.0%
! AAAGTGGAATATATTGTACT+GGG + chr4_3:53547830-53547849 Msa0647440:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr4_3:53547917-53547936 Msa0647440:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr4_3:53547918-53547937 Msa0647440:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr4_3:53547939-53547958 Msa0647440:intron 25.0%
!!! TGTTTTGCATTTTTTGTGAT+TGG + chr4_3:53548492-53548511 Msa0647440:intron 25.0%
! TTATACAGATTACAGAAAGA+TGG + chr4_3:53549243-53549262 Msa0647440:intron 25.0%
!!! ATGAAAACCCATTTAGTTTT+AGG + chr4_3:53549375-53549394 Msa0647440:three_prime_UTR 25.0%
! TCAGAGCATAACAAAATAAA+TGG - chr4_3:53549405-53549424 None:intergenic 25.0%
TGTATAAATAAAGGGGAAAG+TGG + chr4_3:53547814-53547833 Msa0647440:intron 30.0%
GAAAGTGGAATATATTGTAC+TGG + chr4_3:53547829-53547848 Msa0647440:intron 30.0%
TGAAAAAACTAAGCTACACA+AGG - chr4_3:53548086-53548105 None:intergenic 30.0%
!! TAGGAGTACTAGTTAAGAAA+TGG - chr4_3:53548123-53548142 None:intergenic 30.0%
!!! CACGTTCATTATTGTTTTTG+AGG + chr4_3:53548336-53548355 Msa0647440:intron 30.0%
TCTGAACCTCAACAAAATTA+AGG - chr4_3:53548387-53548406 None:intergenic 30.0%
CATGTATTTAGCTAATAGTG+TGG + chr4_3:53548445-53548464 Msa0647440:intron 30.0%
! TCCTAATGATTACCCTTTTA+AGG + chr4_3:53548648-53548667 Msa0647440:CDS 30.0%
GTAGTTTCAAACTTGACTTT+AGG - chr4_3:53548676-53548695 None:intergenic 30.0%
AGGTAATGTGAAATCATCTA+AGG + chr4_3:53548749-53548768 Msa0647440:intron 30.0%
!!! ATTTGTTGTTGACCTTGTTT+TGG + chr4_3:53548787-53548806 Msa0647440:intron 30.0%
TTTAGTGGTGAACTAATGTT+TGG - chr4_3:53549103-53549122 None:intergenic 30.0%
!! TTATCATTCAAGTTGGAGAA+AGG + chr4_3:53549320-53549339 Msa0647440:intron 30.0%
TGGATCACCTAAAACTAAAT+GGG - chr4_3:53549385-53549404 None:intergenic 30.0%
ATGGATCACCTAAAACTAAA+TGG - chr4_3:53549386-53549405 None:intergenic 30.0%
!! TATTTTGTTATGCTCTGATG+TGG + chr4_3:53549407-53549426 Msa0647440:three_prime_UTR 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr4_3:53547814-53547833 Msa0647440:intron 30.0%
GAAAGTGGAATATATTGTAC+TGG + chr4_3:53547829-53547848 Msa0647440:intron 30.0%
TGAAAAAACTAAGCTACACA+AGG - chr4_3:53548086-53548105 None:intergenic 30.0%
!! TAGGAGTACTAGTTAAGAAA+TGG - chr4_3:53548123-53548142 None:intergenic 30.0%
!!! CACGTTCATTATTGTTTTTG+AGG + chr4_3:53548336-53548355 Msa0647440:intron 30.0%
TCTGAACCTCAACAAAATTA+AGG - chr4_3:53548387-53548406 None:intergenic 30.0%
CATGTATTTAGCTAATAGTG+TGG + chr4_3:53548445-53548464 Msa0647440:intron 30.0%
! TCCTAATGATTACCCTTTTA+AGG + chr4_3:53548648-53548667 Msa0647440:CDS 30.0%
GTAGTTTCAAACTTGACTTT+AGG - chr4_3:53548676-53548695 None:intergenic 30.0%
AGGTAATGTGAAATCATCTA+AGG + chr4_3:53548749-53548768 Msa0647440:intron 30.0%
!!! ATTTGTTGTTGACCTTGTTT+TGG + chr4_3:53548787-53548806 Msa0647440:intron 30.0%
TTTAGTGGTGAACTAATGTT+TGG - chr4_3:53549103-53549122 None:intergenic 30.0%
!! TTATCATTCAAGTTGGAGAA+AGG + chr4_3:53549320-53549339 Msa0647440:intron 30.0%
TGGATCACCTAAAACTAAAT+GGG - chr4_3:53549385-53549404 None:intergenic 30.0%
ATGGATCACCTAAAACTAAA+TGG - chr4_3:53549386-53549405 None:intergenic 30.0%
!! TATTTTGTTATGCTCTGATG+TGG + chr4_3:53549407-53549426 Msa0647440:three_prime_UTR 30.0%
AAGATGGTGAATTGTGAAGA+GGG - chr4_3:53547190-53547209 None:intergenic 35.0%
TATGGAAGTGAAGAAGAAGA+TGG - chr4_3:53547206-53547225 None:intergenic 35.0%
! ATTTTCATGGCTACCATCAA+TGG + chr4_3:53547268-53547287 Msa0647440:exon 35.0%
! TTTTCATGGCTACCATCAAT+GGG + chr4_3:53547269-53547288 Msa0647440:exon 35.0%
!! TGTTTTGTTGGAGCAACAAT+GGG - chr4_3:53547313-53547332 None:intergenic 35.0%
!! TTGTTTTGTTGGAGCAACAA+TGG - chr4_3:53547314-53547333 None:intergenic 35.0%
ATGCTAATGTATGATGTCGT+CGG - chr4_3:53547523-53547542 None:intergenic 35.0%
TCATACATTAGCATGATCAG+TGG + chr4_3:53547529-53547548 Msa0647440:intron 35.0%
CATACATTAGCATGATCAGT+GGG + chr4_3:53547530-53547549 Msa0647440:intron 35.0%
CTTGTATGCATTCTTAGATG+AGG + chr4_3:53547563-53547582 Msa0647440:intron 35.0%
!! TGTTCGCTTTTATGTCACTT+TGG - chr4_3:53547678-53547697 None:intergenic 35.0%
ATCTGTGTGAAAATCCAAAC+TGG - chr4_3:53547785-53547804 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr4_3:53547953-53547972 Msa0647440:intron 35.0%
ACTACAAGTGTCTAAGTAAG+TGG + chr4_3:53548018-53548037 Msa0647440:intron 35.0%
CTACAAGTGTCTAAGTAAGT+GGG + chr4_3:53548019-53548038 Msa0647440:intron 35.0%
ATGTAGCCGTAACACATAAA+TGG - chr4_3:53548048-53548067 None:intergenic 35.0%
!!! ACACGTTCTTTGTTTTGTGT+TGG + chr4_3:53548218-53548237 Msa0647440:intron 35.0%
GCTCAACACACAAATCAAAT+TGG - chr4_3:53548245-53548264 None:intergenic 35.0%
GTCTGAATTGATGTCTTTGA+TGG + chr4_3:53548273-53548292 Msa0647440:CDS 35.0%
ACAATGTGCGAATGTAACTT+TGG - chr4_3:53548417-53548436 None:intergenic 35.0%
AAGAATATGTTGTCTTCCTC+AGG - chr4_3:53548556-53548575 None:intergenic 35.0%
AGGAAGACAACATATTCTTG+TGG + chr4_3:53548557-53548576 Msa0647440:CDS 35.0%
GACAACATATTCTTGTGGAA+AGG + chr4_3:53548562-53548581 Msa0647440:CDS 35.0%
TTGTGGAAAGGAACAATAAC+AGG + chr4_3:53548574-53548593 Msa0647440:CDS 35.0%
ACCAAAGATACAGTGTTTGA+AGG + chr4_3:53548598-53548617 Msa0647440:CDS 35.0%
GCCTTAAAAGGGTAATCATT+AGG - chr4_3:53548652-53548671 None:intergenic 35.0%
! TGACTTTAGGAGCCTTAAAA+GGG - chr4_3:53548663-53548682 None:intergenic 35.0%
! TTGACTTTAGGAGCCTTAAA+AGG - chr4_3:53548664-53548683 None:intergenic 35.0%
TTGCCATGAAGATCAACATT+GGG - chr4_3:53548709-53548728 None:intergenic 35.0%
ATTGCCATGAAGATCAACAT+TGG - chr4_3:53548710-53548729 None:intergenic 35.0%
TCTTCATGGCAATATATGCT+TGG + chr4_3:53548717-53548736 Msa0647440:CDS 35.0%
TATATGCTTGGACATACTTC+AGG + chr4_3:53548729-53548748 Msa0647440:CDS 35.0%
ACAAGACTCATAACGATTGA+AGG - chr4_3:53549169-53549188 None:intergenic 35.0%
! AATCGTTATGAGTCTTGTGA+TGG + chr4_3:53549171-53549190 Msa0647440:intron 35.0%
TACAGATTACAGAAAGATGG+TGG + chr4_3:53549246-53549265 Msa0647440:intron 35.0%
! GGAAGTCTTATCATTCAAGT+TGG + chr4_3:53549313-53549332 Msa0647440:intron 35.0%
AAGATGGTGAATTGTGAAGA+GGG - chr4_3:53547190-53547209 None:intergenic 35.0%
TATGGAAGTGAAGAAGAAGA+TGG - chr4_3:53547206-53547225 None:intergenic 35.0%
! ATTTTCATGGCTACCATCAA+TGG + chr4_3:53547268-53547287 Msa0647440:exon 35.0%
! TTTTCATGGCTACCATCAAT+GGG + chr4_3:53547269-53547288 Msa0647440:exon 35.0%
!! TGTTTTGTTGGAGCAACAAT+GGG - chr4_3:53547313-53547332 None:intergenic 35.0%
!! TTGTTTTGTTGGAGCAACAA+TGG - chr4_3:53547314-53547333 None:intergenic 35.0%
ATGCTAATGTATGATGTCGT+CGG - chr4_3:53547523-53547542 None:intergenic 35.0%
TCATACATTAGCATGATCAG+TGG + chr4_3:53547529-53547548 Msa0647440:intron 35.0%
CATACATTAGCATGATCAGT+GGG + chr4_3:53547530-53547549 Msa0647440:intron 35.0%
CTTGTATGCATTCTTAGATG+AGG + chr4_3:53547563-53547582 Msa0647440:intron 35.0%
!! TGTTCGCTTTTATGTCACTT+TGG - chr4_3:53547678-53547697 None:intergenic 35.0%
ATCTGTGTGAAAATCCAAAC+TGG - chr4_3:53547785-53547804 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr4_3:53547953-53547972 Msa0647440:intron 35.0%
ACTACAAGTGTCTAAGTAAG+TGG + chr4_3:53548018-53548037 Msa0647440:intron 35.0%
CTACAAGTGTCTAAGTAAGT+GGG + chr4_3:53548019-53548038 Msa0647440:intron 35.0%
ATGTAGCCGTAACACATAAA+TGG - chr4_3:53548048-53548067 None:intergenic 35.0%
!!! ACACGTTCTTTGTTTTGTGT+TGG + chr4_3:53548218-53548237 Msa0647440:intron 35.0%
GCTCAACACACAAATCAAAT+TGG - chr4_3:53548245-53548264 None:intergenic 35.0%
GTCTGAATTGATGTCTTTGA+TGG + chr4_3:53548273-53548292 Msa0647440:CDS 35.0%
ACAATGTGCGAATGTAACTT+TGG - chr4_3:53548417-53548436 None:intergenic 35.0%
AAGAATATGTTGTCTTCCTC+AGG - chr4_3:53548556-53548575 None:intergenic 35.0%
AGGAAGACAACATATTCTTG+TGG + chr4_3:53548557-53548576 Msa0647440:CDS 35.0%
GACAACATATTCTTGTGGAA+AGG + chr4_3:53548562-53548581 Msa0647440:CDS 35.0%
TTGTGGAAAGGAACAATAAC+AGG + chr4_3:53548574-53548593 Msa0647440:CDS 35.0%
ACCAAAGATACAGTGTTTGA+AGG + chr4_3:53548598-53548617 Msa0647440:CDS 35.0%
GCCTTAAAAGGGTAATCATT+AGG - chr4_3:53548652-53548671 None:intergenic 35.0%
! TGACTTTAGGAGCCTTAAAA+GGG - chr4_3:53548663-53548682 None:intergenic 35.0%
! TTGACTTTAGGAGCCTTAAA+AGG - chr4_3:53548664-53548683 None:intergenic 35.0%
TTGCCATGAAGATCAACATT+GGG - chr4_3:53548709-53548728 None:intergenic 35.0%
ATTGCCATGAAGATCAACAT+TGG - chr4_3:53548710-53548729 None:intergenic 35.0%
TCTTCATGGCAATATATGCT+TGG + chr4_3:53548717-53548736 Msa0647440:CDS 35.0%
TATATGCTTGGACATACTTC+AGG + chr4_3:53548729-53548748 Msa0647440:CDS 35.0%
ACAAGACTCATAACGATTGA+AGG - chr4_3:53549169-53549188 None:intergenic 35.0%
! AATCGTTATGAGTCTTGTGA+TGG + chr4_3:53549171-53549190 Msa0647440:intron 35.0%
TACAGATTACAGAAAGATGG+TGG + chr4_3:53549246-53549265 Msa0647440:intron 35.0%
! GGAAGTCTTATCATTCAAGT+TGG + chr4_3:53549313-53549332 Msa0647440:intron 35.0%
GAAGATGGTGAATTGTGAAG+AGG - chr4_3:53547191-53547210 None:intergenic 40.0%
ATTCCACCTCTGTTCTCAAA+AGG + chr4_3:53547359-53547378 Msa0647440:CDS 40.0%
!! AAACCTTTTGAGAACAGAGG+TGG - chr4_3:53547365-53547384 None:intergenic 40.0%
!! GAGAAACCTTTTGAGAACAG+AGG - chr4_3:53547368-53547387 None:intergenic 40.0%
ACTTGTGTGATCCACATCAA+TGG + chr4_3:53547586-53547605 Msa0647440:intron 40.0%
ACATGAACGGTATAAGGTGT+CGG - chr4_3:53547636-53547655 None:intergenic 40.0%
ACACCTTATACCGTTCATGT+GGG + chr4_3:53547636-53547655 Msa0647440:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr4_3:53547770-53547789 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - chr4_3:53547771-53547790 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr4_3:53547954-53547973 Msa0647440:intron 40.0%
GGGCATCCATTTATGTGTTA+CGG + chr4_3:53548039-53548058 Msa0647440:intron 40.0%
!! AGGGTTTGCTAACTAGTGTT+AGG - chr4_3:53548142-53548161 None:intergenic 40.0%
! GTGACGCCTTAATTTTGTTG+AGG + chr4_3:53548378-53548397 Msa0647440:intron 40.0%
!! TGGTATATCTGCTTTTCCTG+AGG + chr4_3:53548537-53548556 Msa0647440:CDS 40.0%
GCCTTCAAACACTGTATCTT+TGG - chr4_3:53548602-53548621 None:intergenic 40.0%
CATGAAGATCAACATTGGGA+TGG - chr4_3:53548705-53548724 None:intergenic 40.0%
CATCCCAATGTTGATCTTCA+TGG + chr4_3:53548703-53548722 Msa0647440:CDS 40.0%
!!! TTGTTGACCTTGTTTTGGCT+TGG + chr4_3:53548792-53548811 Msa0647440:intron 40.0%
ATTGACTAAGCAGTAGCACT+TGG - chr4_3:53549289-53549308 None:intergenic 40.0%
GCTACTGCTTAGTCAATCTT+TGG + chr4_3:53549292-53549311 Msa0647440:intron 40.0%
GAAGATGGTGAATTGTGAAG+AGG - chr4_3:53547191-53547210 None:intergenic 40.0%
ATTCCACCTCTGTTCTCAAA+AGG + chr4_3:53547359-53547378 Msa0647440:CDS 40.0%
!! AAACCTTTTGAGAACAGAGG+TGG - chr4_3:53547365-53547384 None:intergenic 40.0%
!! GAGAAACCTTTTGAGAACAG+AGG - chr4_3:53547368-53547387 None:intergenic 40.0%
ACTTGTGTGATCCACATCAA+TGG + chr4_3:53547586-53547605 Msa0647440:intron 40.0%
ACATGAACGGTATAAGGTGT+CGG - chr4_3:53547636-53547655 None:intergenic 40.0%
ACACCTTATACCGTTCATGT+GGG + chr4_3:53547636-53547655 Msa0647440:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr4_3:53547770-53547789 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - chr4_3:53547771-53547790 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr4_3:53547954-53547973 Msa0647440:intron 40.0%
GGGCATCCATTTATGTGTTA+CGG + chr4_3:53548039-53548058 Msa0647440:intron 40.0%
!! AGGGTTTGCTAACTAGTGTT+AGG - chr4_3:53548142-53548161 None:intergenic 40.0%
! GTGACGCCTTAATTTTGTTG+AGG + chr4_3:53548378-53548397 Msa0647440:intron 40.0%
!! TGGTATATCTGCTTTTCCTG+AGG + chr4_3:53548537-53548556 Msa0647440:CDS 40.0%
GCCTTCAAACACTGTATCTT+TGG - chr4_3:53548602-53548621 None:intergenic 40.0%
CATGAAGATCAACATTGGGA+TGG - chr4_3:53548705-53548724 None:intergenic 40.0%
CATCCCAATGTTGATCTTCA+TGG + chr4_3:53548703-53548722 Msa0647440:CDS 40.0%
!!! TTGTTGACCTTGTTTTGGCT+TGG + chr4_3:53548792-53548811 Msa0647440:intron 40.0%
ATTGACTAAGCAGTAGCACT+TGG - chr4_3:53549289-53549308 None:intergenic 40.0%
GCTACTGCTTAGTCAATCTT+TGG + chr4_3:53549292-53549311 Msa0647440:intron 40.0%
GGTGAATTGTGAAGAGGGTT+TGG - chr4_3:53547185-53547204 None:intergenic 45.0%
!! AACAATGGGTTGAGCAGCAT+CGG - chr4_3:53547299-53547318 None:intergenic 45.0%
!! GGAGGAAGAGGTTGTTTTGT+TGG - chr4_3:53547325-53547344 None:intergenic 45.0%
GAGAACAGAGGTGGAATCAA+CGG - chr4_3:53547356-53547375 None:intergenic 45.0%
CATGATCAGTGGGTCTTTGT+TGG + chr4_3:53547540-53547559 Msa0647440:intron 45.0%
TGATCCACATCAATGGCACA+CGG + chr4_3:53547593-53547612 Msa0647440:intron 45.0%
GACACCTTATACCGTTCATG+TGG + chr4_3:53547635-53547654 Msa0647440:intron 45.0%
TGACCCACATGAACGGTATA+AGG - chr4_3:53547642-53547661 None:intergenic 45.0%
TACCGTTCATGTGGGTCATT+CGG + chr4_3:53547644-53547663 Msa0647440:intron 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + chr4_3:53547768-53547787 Msa0647440:intron 45.0%
ATTAAATACTCCCTCCGTCC+CGG - chr4_3:53547975-53547994 None:intergenic 45.0%
TGATTGGACTGTCAGATGAG+CGG + chr4_3:53548508-53548527 Msa0647440:intron 45.0%
ATCAACATTGGGATGGAAGC+AGG - chr4_3:53548698-53548717 None:intergenic 45.0%
CAGTATGCCAAGCCAAAACA+AGG - chr4_3:53548802-53548821 None:intergenic 45.0%
CTGTCCATCCAAAGTCTTCT+TGG + chr4_3:53548886-53548905 Msa0647440:CDS 45.0%
TCCATCCAAAGTCTTCTTGG+AGG + chr4_3:53548889-53548908 Msa0647440:CDS 45.0%
ACCTCCAAGAAGACTTTGGA+TGG - chr4_3:53548893-53548912 None:intergenic 45.0%
GTCTACCTCCAAGAAGACTT+TGG - chr4_3:53548897-53548916 None:intergenic 45.0%
!! TGTGCTGCTTGTGGATTTAG+TGG - chr4_3:53549118-53549137 None:intergenic 45.0%
!! CAGCTTTGGAGCAATCAAGA+AGG + chr4_3:53549136-53549155 Msa0647440:CDS 45.0%
GGTGAATTGTGAAGAGGGTT+TGG - chr4_3:53547185-53547204 None:intergenic 45.0%
!! AACAATGGGTTGAGCAGCAT+CGG - chr4_3:53547299-53547318 None:intergenic 45.0%
!! GGAGGAAGAGGTTGTTTTGT+TGG - chr4_3:53547325-53547344 None:intergenic 45.0%
GAGAACAGAGGTGGAATCAA+CGG - chr4_3:53547356-53547375 None:intergenic 45.0%
CATGATCAGTGGGTCTTTGT+TGG + chr4_3:53547540-53547559 Msa0647440:intron 45.0%
TGATCCACATCAATGGCACA+CGG + chr4_3:53547593-53547612 Msa0647440:intron 45.0%
GACACCTTATACCGTTCATG+TGG + chr4_3:53547635-53547654 Msa0647440:intron 45.0%
TGACCCACATGAACGGTATA+AGG - chr4_3:53547642-53547661 None:intergenic 45.0%
TACCGTTCATGTGGGTCATT+CGG + chr4_3:53547644-53547663 Msa0647440:intron 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + chr4_3:53547768-53547787 Msa0647440:intron 45.0%
ATTAAATACTCCCTCCGTCC+CGG - chr4_3:53547975-53547994 None:intergenic 45.0%
TGATTGGACTGTCAGATGAG+CGG + chr4_3:53548508-53548527 Msa0647440:intron 45.0%
ATCAACATTGGGATGGAAGC+AGG - chr4_3:53548698-53548717 None:intergenic 45.0%
CAGTATGCCAAGCCAAAACA+AGG - chr4_3:53548802-53548821 None:intergenic 45.0%
CTGTCCATCCAAAGTCTTCT+TGG + chr4_3:53548886-53548905 Msa0647440:CDS 45.0%
TCCATCCAAAGTCTTCTTGG+AGG + chr4_3:53548889-53548908 Msa0647440:CDS 45.0%
ACCTCCAAGAAGACTTTGGA+TGG - chr4_3:53548893-53548912 None:intergenic 45.0%
GTCTACCTCCAAGAAGACTT+TGG - chr4_3:53548897-53548916 None:intergenic 45.0%
!! TGTGCTGCTTGTGGATTTAG+TGG - chr4_3:53549118-53549137 None:intergenic 45.0%
!! CAGCTTTGGAGCAATCAAGA+AGG + chr4_3:53549136-53549155 Msa0647440:CDS 45.0%
!! AGCATCGGTGTTCCCATTGA+TGG - chr4_3:53547284-53547303 None:intergenic 50.0%
! GAATCAACGGACTTAGGAGG+AGG - chr4_3:53547343-53547362 None:intergenic 50.0%
! GTGGAATCAACGGACTTAGG+AGG - chr4_3:53547346-53547365 None:intergenic 50.0%
! GAGGTGGAATCAACGGACTT+AGG - chr4_3:53547349-53547368 None:intergenic 50.0%
ACCGTTCATGTGGGTCATTC+GGG + chr4_3:53547645-53547664 Msa0647440:intron 50.0%
ACCCGAATGACCCACATGAA+CGG - chr4_3:53547649-53547668 None:intergenic 50.0%
CTCAGATAAAACGGGACGGA+GGG - chr4_3:53547762-53547781 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - chr4_3:53547766-53547785 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr4_3:53547958-53547977 Msa0647440:intron 50.0%
TGTCAGATGAGCGGTGATTC+TGG + chr4_3:53548517-53548536 Msa0647440:intron 50.0%
ATCCACAAGCAGCACAGCTT+TGG + chr4_3:53549122-53549141 Msa0647440:CDS 50.0%
!! AGCATCGGTGTTCCCATTGA+TGG - chr4_3:53547284-53547303 None:intergenic 50.0%
! GAATCAACGGACTTAGGAGG+AGG - chr4_3:53547343-53547362 None:intergenic 50.0%
! GTGGAATCAACGGACTTAGG+AGG - chr4_3:53547346-53547365 None:intergenic 50.0%
! GAGGTGGAATCAACGGACTT+AGG - chr4_3:53547349-53547368 None:intergenic 50.0%
ACCGTTCATGTGGGTCATTC+GGG + chr4_3:53547645-53547664 Msa0647440:intron 50.0%
ACCCGAATGACCCACATGAA+CGG - chr4_3:53547649-53547668 None:intergenic 50.0%
CTCAGATAAAACGGGACGGA+GGG - chr4_3:53547762-53547781 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - chr4_3:53547766-53547785 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr4_3:53547958-53547977 Msa0647440:intron 50.0%
TGTCAGATGAGCGGTGATTC+TGG + chr4_3:53548517-53548536 Msa0647440:intron 50.0%
ATCCACAAGCAGCACAGCTT+TGG + chr4_3:53549122-53549141 Msa0647440:CDS 50.0%
ACGGACTTAGGAGGAGGAAG+AGG - chr4_3:53547337-53547356 None:intergenic 55.0%
! GACACCGTGTGCCATTGATG+TGG - chr4_3:53547600-53547619 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG - chr4_3:53547763-53547782 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr4_3:53547962-53547981 Msa0647440:intron 55.0%
!! CTCCAAAGCTGTGCTGCTTG+TGG - chr4_3:53549127-53549146 None:intergenic 55.0%
ACGGACTTAGGAGGAGGAAG+AGG - chr4_3:53547337-53547356 None:intergenic 55.0%
! GACACCGTGTGCCATTGATG+TGG - chr4_3:53547600-53547619 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG - chr4_3:53547763-53547782 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr4_3:53547962-53547981 Msa0647440:intron 55.0%
!! CTCCAAAGCTGTGCTGCTTG+TGG - chr4_3:53549127-53549146 None:intergenic 55.0%
!! AGGTGTCGGTGCACTCTGCA+GGG - chr4_3:53547622-53547641 None:intergenic 60.0%
!! AAGGTGTCGGTGCACTCTGC+AGG - chr4_3:53547623-53547642 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr4_3:53547961-53547980 Msa0647440:intron 60.0%
!! AGGTGTCGGTGCACTCTGCA+GGG - chr4_3:53547622-53547641 None:intergenic 60.0%
!! AAGGTGTCGGTGCACTCTGC+AGG - chr4_3:53547623-53547642 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr4_3:53547961-53547980 Msa0647440:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 53547162 53549514 53547162 ID=Msa0647440;Name=Msa0647440
chr4_3 mRNA 53547162 53549514 53547162 ID=Msa0647440-mRNA-1;Parent=Msa0647440;Name=Msa0647440-mRNA-1;_AED=0.21;_eAED=0.21;_QI=112|1|1|1|0.83|0.71|7|188|179
chr4_3 exon 53547162 53547380 53547162 ID=Msa0647440-mRNA-1:exon:13421;Parent=Msa0647440-mRNA-1
chr4_3 exon 53548267 53548294 53548267 ID=Msa0647440-mRNA-1:exon:13422;Parent=Msa0647440-mRNA-1
chr4_3 exon 53548523 53548750 53548523 ID=Msa0647440-mRNA-1:exon:13423;Parent=Msa0647440-mRNA-1
chr4_3 exon 53548847 53548910 53548847 ID=Msa0647440-mRNA-1:exon:13424;Parent=Msa0647440-mRNA-1
chr4_3 exon 53549098 53549157 53549098 ID=Msa0647440-mRNA-1:exon:13425;Parent=Msa0647440-mRNA-1
chr4_3 exon 53549251 53549308 53549251 ID=Msa0647440-mRNA-1:exon:13426;Parent=Msa0647440-mRNA-1
chr4_3 exon 53549332 53549514 53549332 ID=Msa0647440-mRNA-1:exon:13427;Parent=Msa0647440-mRNA-1
chr4_3 five_prime_UTR 53547162 53547273 53547162 ID=Msa0647440-mRNA-1:five_prime_utr;Parent=Msa0647440-mRNA-1
chr4_3 CDS 53547274 53547380 53547274 ID=Msa0647440-mRNA-1:cds;Parent=Msa0647440-mRNA-1
chr4_3 CDS 53548267 53548294 53548267 ID=Msa0647440-mRNA-1:cds;Parent=Msa0647440-mRNA-1
chr4_3 CDS 53548523 53548750 53548523 ID=Msa0647440-mRNA-1:cds;Parent=Msa0647440-mRNA-1
chr4_3 CDS 53548847 53548910 53548847 ID=Msa0647440-mRNA-1:cds;Parent=Msa0647440-mRNA-1
chr4_3 CDS 53549098 53549157 53549098 ID=Msa0647440-mRNA-1:cds;Parent=Msa0647440-mRNA-1
chr4_3 CDS 53549251 53549303 53549251 ID=Msa0647440-mRNA-1:cds;Parent=Msa0647440-mRNA-1
chr4_3 three_prime_UTR 53549304 53549308 53549304 ID=Msa0647440-mRNA-1:three_prime_utr;Parent=Msa0647440-mRNA-1
chr4_3 three_prime_UTR 53549332 53549514 53549332 ID=Msa0647440-mRNA-1:three_prime_utr;Parent=Msa0647440-mRNA-1
Gene Sequence

>Msa0647440

ATGGCTACCATCAATGGGAACACCGATGCTGCTCAACCCATTGTTGCTCCAACAAAACAACCTCTTCCTCCTCCTAAGTCCGTTGATTCCACCTCTGTTCTCAAAAGATTGCAGTCTGAATTGATGTCTTTGATGATGAGCGGTGATTCTGGTATATCTGCTTTTCCTGAGGAAGACAACATATTCTTGTGGAAAGGAACAATAACAGGAACCAAAGATACAGTGTTTGAAGGCACAGATTACAAGTTATCACTTTCTTTTCCTAATGATTACCCTTTTAAGGCTCCTAAAGTCAAGTTTGAAACTACCTGCTTCCATCCCAATGTTGATCTTCATGGCAATATATGCTTGGACATACTTCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTACTGTCCATCCAAAGTCTTCTTGGAGAGCCAAACATTAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGATTACAGAAAGATGGTGGAGAAGTTGTACAAAGCTCCAAGTGCTACTGCTTAG

Protein sequence

>Msa0647440

MATINGNTDAAQPIVAPTKQPLPPPKSVDSTSVLKRLQSELMSLMMSGDSGISAFPEEDNIFLWKGTITGTKDTVFEGTDYKLSLSFPNDYPFKAPKVKFETTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEDYRKMVEKLYKAPSATA*