AlfalfaGEDB | Msa0671410

M. sativa cultivar zhongmu-4 / Msa0671410

KEGG: K00800
GO: GO:0003674 GO:0003824 GO:0003866 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0071704 GO:1901576
PFAM: PF00275.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0671410	XP_003605139.1	97.860	514	6	1	1	509	1	514	0.0	1026

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0671410	sp\|P11043\|AROA_PETHY	77.148	512	105	3	4	508	1	507	0.0	779

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0671410	G7JEN4	97.860	514	6	1	1	509	1	514	0.0	1026

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0106620	Msa0671410	0.811783	5.890510e-51	-8.615850e-47
Msa0529350	Msa0671410	0.850834	1.314298e-60	-8.615850e-47
Msa0624940	Msa0671410	0.896983	2.183968e-76	-8.615850e-47
Msa0626270	Msa0671410	0.807648	4.561190e-50	-8.615850e-47
Msa0626460	Msa0671410	0.817249	3.636915e-52	-8.615850e-47
Msa0664540	Msa0671410	0.828517	8.601957e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0671410	MtrunA17_Chr4g0011291	97.860	514	6	1	1	509	1	514	0.0	1026

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0671410	AT2G45300.1	74.806	516	119	3	1	509	1	512	775
Msa0671410	AT2G45300.3	74.806	516	119	3	1	509	1	512	775
Msa0671410	AT2G45300.2	74.806	516	119	3	1	509	1	512	775
Msa0671410	AT2G45300.4	74.806	516	119	3	1	509	1	512	775
Msa0671410	AT1G48860.1	78.511	470	94	3	43	509	48	513	728
Msa0671410	AT1G48860.2	77.119	472	80	2	66	509	10	481	709

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Find 164 sgRNAs with CRISPR-Local

Find 526 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTGTAACTGTTACC+GGG	0.672809	4_4:+14663086	Msa0671410:CDS
AAAGAAGATCTTACTTTCTT+TGG	0.183928	4_4:-14665868	None:intergenic
AAAGACCCTTGGACTTCGTG+TGG	0.599980	4_4:+14660210	Msa0671410:CDS
AAATAATTTGAGTGAATAGA+TGG	0.388905	4_4:-14658018	None:intergenic
AAATGAGTATGTTCTTAAGA+AGG	0.562127	4_4:+14665951	Msa0671410:CDS
AACAACCAAACAAGCTGTTG+TGG	0.587688	4_4:+14660243	Msa0671410:CDS
AACAACCTTCTCCAAAGAGA+AGG	0.600930	4_4:-14666259	None:intergenic
AACACAGTGCTAATTGGGAC+AGG	0.576861	4_4:+14661961	Msa0671410:CDS
AACACCCATAACCGTCACAT+CGG	0.658005	4_4:+14665665	Msa0671410:CDS
AACTGTTACCGGGCCTCCAC+GGG	0.469893	4_4:+14663096	Msa0671410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGTTCAAATTCTTGACTAT+AGG	-	chr4_4:14657959-14657978	None:intergenic	30.0%
CTTTATTGGAAATTGTGATG+TGG	+	chr4_4:14658380-14658399	Msa0671410:CDS	30.0%
GAAGTACACTTTCATAAACA+TGG	+	chr4_4:14659743-14659762	Msa0671410:intron	30.0%
AGTACACTTTCATAAACATG+GGG	+	chr4_4:14659745-14659764	Msa0671410:intron	30.0%
TATCATTGCACTTTATTCTG+TGG	+	chr4_4:14660025-14660044	Msa0671410:intron	30.0%
TAGAATAGTCTCTATTCAAC+AGG	-	chr4_4:14660113-14660132	None:intergenic	30.0%
AATTTATTCCTTGGAAATGC+CGG	+	chr4_4:14660307-14660326	Msa0671410:CDS	30.0%
TTGGTAAATAATGGTTGTAG+AGG	+	chr4_4:14660432-14660451	Msa0671410:intron	30.0%
GATAGCAGAAAATAAAACAG+TGG	-	chr4_4:14660582-14660601	None:intergenic	30.0%
ATTTCAGATACATACTTGAC+GGG	+	chr4_4:14660902-14660921	Msa0671410:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	14657932	14666411	14657932	ID=Msa0671410;Name=Msa0671410
chr4_4	mRNA	14657932	14666411	14657932	ID=Msa0671410-mRNA-1;Parent=Msa0671410;Name=Msa0671410-mRNA-1;_AED=0.18;_eAED=0.18;_QI=290\|0.7\|0.63\|0.72\|1\|1\|11\|0\|640
chr4_4	exon	14657932	14658560	14657932	ID=Msa0671410-mRNA-1:exon:4488;Parent=Msa0671410-mRNA-1
chr4_4	exon	14660148	14660383	14660148	ID=Msa0671410-mRNA-1:exon:4489;Parent=Msa0671410-mRNA-1
chr4_4	exon	14660909	14661062	14660909	ID=Msa0671410-mRNA-1:exon:4490;Parent=Msa0671410-mRNA-1
chr4_4	exon	14661798	14662012	14661798	ID=Msa0671410-mRNA-1:exon:4491;Parent=Msa0671410-mRNA-1
chr4_4	exon	14662094	14662211	14662094	ID=Msa0671410-mRNA-1:exon:4492;Parent=Msa0671410-mRNA-1
chr4_4	exon	14663028	14663238	14663028	ID=Msa0671410-mRNA-1:exon:4493;Parent=Msa0671410-mRNA-1
chr4_4	exon	14664287	14664348	14664287	ID=Msa0671410-mRNA-1:exon:4494;Parent=Msa0671410-mRNA-1
chr4_4	exon	14664600	14664791	14664600	ID=Msa0671410-mRNA-1:exon:4495;Parent=Msa0671410-mRNA-1
chr4_4	exon	14665645	14665707	14665645	ID=Msa0671410-mRNA-1:exon:4496;Parent=Msa0671410-mRNA-1
chr4_4	exon	14665796	14665972	14665796	ID=Msa0671410-mRNA-1:exon:4497;Parent=Msa0671410-mRNA-1
chr4_4	exon	14666256	14666411	14666256	ID=Msa0671410-mRNA-1:exon:4498;Parent=Msa0671410-mRNA-1
chr4_4	five_prime_UTR	14657932	14658221	14657932	ID=Msa0671410-mRNA-1:five_prime_utr;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14658222	14658560	14658222	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14660148	14660383	14660148	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14660909	14661062	14660909	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14661798	14662012	14661798	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14662094	14662211	14662094	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14663028	14663238	14663028	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14664287	14664348	14664287	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14664600	14664791	14664600	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14665645	14665707	14665645	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14665796	14665972	14665796	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4	CDS	14666256	14666411	14666256	ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1

Gene Sequence

>Msa0671410

ATGGCCCAGTTAAGCAAAATCAACAATCTAGTTCAAACAGCTCAAAATTTTCACAATTCAACAAATTCCAACAAACCCAATTCAGCAAAATCAGTTTCATTGAGGTCAAGCATTTGGGGTTCTTCAAAATCATGGAGTTTGAAGCATAAAAATGGAGTCTTTATTGGAAATTGTGATGTGGGTAGGAGGAATTCTGTTGTGTTGAAGGCTTCTGCTTCTGTTGCTGCTGCGGCGCCGGAGATTGTGTTGGAACCTATTAGGGAGATTTCTGGAAGTATTACATTGCCTGGGTCTAAGTCTTTGTCCAATCGGATTTTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTTGTAGAGAACTTGTTAGATAGTGAGGATATTCATTACATGCTTGAGGCATTAAAGACCCTTGGACTTCGTGTGGAAGATGACAAAACAACCAAACAAGCTGTTGTGGAAGGCAGTGGTGGGTTATTTCCTGAATCTAAAGATGAAGTTAATTTATTCCTTGGAAATGCCGGTACTGCAATGCGTCCTTTGACGGCAGCCTTGGTTGCTGCAGGTGGAAATACAAGATACATACTTGACGGGGTGCCCCGAATGAGAGAGAGACCAATTGGAGATTTAGTGTCTGGTCTTAAGCAACTTGGTGCAGATGTTGATTGTTTTCTTGGCACAAACTGTCCACCTGTTCGTATAATTGGGAAGGGAGGGCTTCCAGGGGGAAAGGTGAAACTGTCTGGATCTATTAGTAGTCAGTACTTGACTGCTTTGCTTATGGCAGCTCCGTTGGCCCTTGGTGATGTTGAGATTGAGATTGTTGATAAACTGATTTCTGTTCCGTATGTCGAAATGACTTTGAAGTTGATGGAGCGCTTTGGAGTCTTCGTAGAACACAGTGCTAATTGGGACAGGTTCTTGGTCCATGGAGGTCAAAAGTACAAGTCTCCCGGCAATGCTTTTGTTGAAGGTGATGCTTCAAGTGCTAGTTACTTTCTAGCTGGTGCAGCAGTTACTGGCGGAACTATCACGGTTATAGGCTGTGGGACAAGCAGTTTACAGGGAGATGTAAAATTTGCTGAAGTTCTTGAAAAGATGGGAGCTAAAGTTACATGGACAGAAAACAGTGTAACTGTTACCGGGCCTCCACGGGATTCTTCCGGTCGGAAAGTCTTGCAAGGCATTGATGTCAATATGAACAAGATGCCAGATGTTGCCATGACACTTGCTGTTGTTGCACTATATGCTAATGGTCCCACTGCTATTAGAGATGTGGCAAGTTGGAGAGTTAAAGAAACTGAAAGAATGATAGCAATCTGCACAGAACTCAGAAAGCTAGGAGCAACTGTTGAAGAAGGTCCTGATTACTGTGTGATAACACCACCTGAGAAATTGAATGTCACATCAATAGATACATATGATGATCATAGAATGGCCATGGCATTTTCTCTTGCTGCTTGTGGTGATGTTCCAGTTACCATCAAAGATCCCGGTTGCACCAGAAAAACATTCCCTGATTACTTTCAAACTGCCGTTCCAAGCTCACAAACACCCATAACCGTCACATCGGACGTCGTTCTTCTGATCCTGTTTACCACTCTTAAGAAGATGGGCGTAGCGTCTAACTCACTGGGAATTTTATTAGTCGATGTAGTGGTGGGTCCAAAGAAAGTAAGATCTTCTTTCTTTGTCACAGACAGCAAGCATTCATATTATGTCATCCTTGGTATAGGTTGGATACACACAAATGAGTATGTTCTTAAGAAGAAGCCTTCTCTTTGGAGAAGGTTGTTACGATTCAGTTACGCATTTCCGTCATTGTTGCGTGCTTCTGAAGCTTTCAGTTACGCAATTTCGCCATTGTTGCGTGATTTTGAAGCTTCGTCTTCTTCATTTCTTTTCTCCTTGTTGAAGATTCTTTGA

Protein sequence

>Msa0671410

MAQLSKINNLVQTAQNFHNSTNSNKPNSAKSVSLRSSIWGSSKSWSLKHKNGVFIGNCDVGRRNSVVLKASASVAAAAPEIVLEPIREISGSITLPGSKSLSNRILLLAALSEGTTVVENLLDSEDIHYMLEALKTLGLRVEDDKTTKQAVVEGSGGLFPESKDEVNLFLGNAGTAMRPLTAALVAAGGNTRYILDGVPRMRERPIGDLVSGLKQLGADVDCFLGTNCPPVRIIGKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVFVEHSANWDRFLVHGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVIGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVALYANGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTSIDTYDDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYFQTAVPSSQTPITVTSDVVLLILFTTLKKMGVASNSLGILLVDVVVGPKKVRSSFFVTDSKHSYYVILGIGWIHTNEYVLKKKPSLWRRLLRFSYAFPSLLRASEAFSYAISPLLRDFEASSSSFLFSLLKIL*