AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0671410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0671410 MtrunA17_Chr4g0011291 97.860 514 6 1 1 509 1 514 0.0 1026
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0671410 AT2G45300.1 74.806 516 119 3 1 509 1 512 0.0 775
Msa0671410 AT2G45300.3 74.806 516 119 3 1 509 1 512 0.0 775
Msa0671410 AT2G45300.2 74.806 516 119 3 1 509 1 512 0.0 775
Msa0671410 AT2G45300.4 74.806 516 119 3 1 509 1 512 0.0 775
Msa0671410 AT1G48860.1 78.511 470 94 3 43 509 48 513 0.0 728
Msa0671410 AT1G48860.2 77.119 472 80 2 66 509 10 481 0.0 709

Find 164 sgRNAs with CRISPR-Local

Find 526 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCCACCTGTTCGTATAAT+TGG 0.119896 4_4:+14661015 Msa0671410:CDS
AAAGAAGATCTTACTTTCTT+TGG 0.183928 4_4:-14665868 None:intergenic
AGATTGTGTTGGAACCTATT+AGG 0.228602 4_4:+14658460 Msa0671410:CDS
GAACCTATTAGGGAGATTTC+TGG 0.229698 4_4:+14658471 Msa0671410:CDS
CTAGCTGGTGCAGCAGTTAC+TGG 0.232551 4_4:+14662146 Msa0671410:CDS
GCCTTCCACAACAGCTTGTT+TGG 0.260609 4_4:-14660248 None:intergenic
TTAACTTCATCTTTAGATTC+AGG 0.269585 4_4:-14660286 None:intergenic
TTCATTGAGGTCAAGCATTT+GGG 0.273349 4_4:+14658317 Msa0671410:CDS
TTGGTGTAAGGTGTGGTTGT+TGG 0.290808 4_4:-14658105 None:intergenic
TATTATGTCATCCTTGGTAT+AGG 0.309407 4_4:+14665916 Msa0671410:CDS
TGCTAATTGGGACAGGTTCT+TGG 0.312726 4_4:+14661968 Msa0671410:CDS
ATTGGGAAGGGAGGGCTTCC+AGG 0.321255 4_4:+14661033 Msa0671410:CDS
GTACTTGACTGCTTTGCTTA+TGG 0.322664 4_4:+14661827 Msa0671410:CDS
TTTCATTGAGGTCAAGCATT+TGG 0.328090 4_4:+14658316 Msa0671410:CDS
GATGAAGTTAATTTATTCCT+TGG 0.328404 4_4:+14660298 Msa0671410:CDS
TTCTGTTGCTGCTGCGGCGC+CGG 0.329924 4_4:+14658437 Msa0671410:CDS
GATTGTGTTGGAACCTATTA+GGG 0.330175 4_4:+14658461 Msa0671410:CDS
CGAAATGACTTTGAAGTTGA+TGG 0.332647 4_4:+14661917 Msa0671410:CDS
CCGGGATCTTTGATGGTAAC+TGG 0.333952 4_4:-14664735 None:intergenic
GGTATCAGAAGCCTTCTCTT+TGG 0.335662 4_4:+14666248 Msa0671410:intron
ATGAACTTCACCTACCAAAA+AGG 0.339652 4_4:-14657984 None:intergenic
TCAAGGACTTGAAAGTAATC+AGG 0.341212 4_4:-14664777 None:intergenic
CTTCCAGAAATCTCCCTAAT+AGG 0.341348 4_4:-14658474 None:intergenic
TCGTAGAACACAGTGCTAAT+TGG 0.345920 4_4:+14661955 Msa0671410:CDS
CAATTGGTCTCTCTCTCATT+CGG 0.348009 4_4:-14660930 None:intergenic
CTGTGGGACAAGCAGTTTAC+AGG 0.352564 4_4:+14662190 Msa0671410:CDS
GGCGGAACTATCACGGTTAT+AGG 0.353223 4_4:+14662167 Msa0671410:CDS
GAGGAATTCTGTTGTGTTGA+AGG 0.359797 4_4:+14658407 Msa0671410:CDS
ACCTTCAACAAAAGCATTGC+CGG 0.362144 4_4:-14662099 None:intergenic
ACGTCCGATGTGACGGTTAT+GGG 0.362537 4_4:-14665669 None:intergenic
CGCATGCAGGTGAAACTGTC+TGG 0.373379 4_4:+14661789 Msa0671410:intron
TGCTGAAGTTCTTGAAAAGA+TGG 0.379657 4_4:+14663042 Msa0671410:CDS
TCTGGAAGTATTACATTGCC+TGG 0.379783 4_4:+14658489 Msa0671410:CDS
GAAAACAGTGTAACTGTTAC+CGG 0.381454 4_4:+14663085 Msa0671410:CDS
GATGTGACATTCAATTTCTC+AGG 0.385761 4_4:-14664648 None:intergenic
GGTGCAACCGGGATCTTTGA+TGG 0.387437 4_4:-14664742 None:intergenic
AAATAATTTGAGTGAATAGA+TGG 0.388905 4_4:-14658018 None:intergenic
AACTTTAAGCAAAATTGAAA+TGG 0.394967 4_4:+14658203 Msa0671410:exon
GTGTTCAAATTCTTGACTAT+AGG 0.396466 4_4:-14657956 None:intergenic
CGTAGAACACAGTGCTAATT+GGG 0.396858 4_4:+14661956 Msa0671410:CDS
AATTGGTCTCTCTCTCATTC+GGG 0.412106 4_4:-14660929 None:intergenic
TTTGGGGTTCTTCAAAATCA+TGG 0.420830 4_4:+14658334 Msa0671410:CDS
GACGTCCGATGTGACGGTTA+TGG 0.422966 4_4:-14665670 None:intergenic
CCCTTCCCAATTATACGAAC+AGG 0.423334 4_4:-14661021 None:intergenic
TACTGCAATGCGTCCTTTGA+CGG 0.424822 4_4:+14660330 Msa0671410:CDS
ATGGCAGCTCCGTTGGCCCT+TGG 0.427336 4_4:+14661846 Msa0671410:CDS
GTTATGGGTGTTTGTGAGCT+TGG 0.432021 4_4:-14665654 None:intergenic
TTTGCTTATGGCAGCTCCGT+TGG 0.432957 4_4:+14661839 Msa0671410:CDS
GCAAGTGTCATGGCAACATC+TGG 0.434911 4_4:-14663172 None:intergenic
ACGGCAGCCTTGGTTGCTGC+AGG 0.440585 4_4:+14660349 Msa0671410:CDS
GGGCCTCCACGGGATTCTTC+CGG 0.442182 4_4:+14663106 Msa0671410:CDS
CCAATTGGAGATTTAGTGTC+TGG 0.444538 4_4:+14660946 Msa0671410:CDS
GTCCACCTGTTCGTATAATT+GGG 0.447258 4_4:+14661016 Msa0671410:CDS
TTGAAGTTGATGGAGCGCTT+TGG 0.447617 4_4:+14661927 Msa0671410:CDS
CGAATGAGAGAGAGACCAAT+TGG 0.449698 4_4:+14660931 Msa0671410:CDS
GCGTCCTTTGACGGCAGCCT+TGG 0.455283 4_4:+14660339 Msa0671410:CDS
CATTCATATTATGTCATCCT+TGG 0.456496 4_4:+14665910 Msa0671410:CDS
GGTGTTATCACACAGTAATC+AGG 0.461114 4_4:-14664624 None:intergenic
CCAGACACTAAATCTCCAAT+TGG 0.462623 4_4:-14660946 None:intergenic
GGACGTCGTTCTTCTGATCC+TGG 0.463415 4_4:+14665686 Msa0671410:CDS
CAAAGGACGCATTGCAGTAC+CGG 0.465602 4_4:-14660326 None:intergenic
CTTGAGGCATTAAAGACCCT+TGG 0.467801 4_4:+14660199 Msa0671410:CDS
GTTTACCACTCTTAAGAAGA+TGG 0.469692 4_4:+14665795 Msa0671410:intron
AACTGTTACCGGGCCTCCAC+GGG 0.469893 4_4:+14663096 Msa0671410:CDS
GGGCGTAGCGTCTAACTCAC+TGG 0.473289 4_4:+14665816 Msa0671410:CDS
GGTCTAAGTCTTTGTCCAAT+CGG 0.478048 4_4:+14658511 Msa0671410:CDS
AGTGCTAGTTACTTTCTAGC+TGG 0.478748 4_4:+14662131 Msa0671410:CDS
TTCAAAGTCATTTCGACATA+CGG 0.479092 4_4:-14661909 None:intergenic
CAGCAAAATCAGTTTCATTG+AGG 0.481774 4_4:+14658304 Msa0671410:CDS
GTTGTTGCACTATATGCTAA+TGG 0.485600 4_4:+14663196 Msa0671410:CDS
AATTTATTCCTTGGAAATGC+CGG 0.486192 4_4:+14660307 Msa0671410:CDS
TTCTGCTTCTGTTGCTGCTG+CGG 0.486404 4_4:+14658431 Msa0671410:CDS
GGAAGAATCCCGTGGAGGCC+CGG 0.497540 4_4:-14663104 None:intergenic
TAACTGTTACCGGGCCTCCA+CGG 0.500019 4_4:+14663095 Msa0671410:CDS
TGGGACAGGTTCTTGGTCCA+TGG 0.500853 4_4:+14661975 Msa0671410:CDS
GCTGAAGTTCTTGAAAAGAT+GGG 0.501702 4_4:+14663043 Msa0671410:CDS
AGAGAACTTGTTAGATAGTG+AGG 0.501939 4_4:+14660162 Msa0671410:CDS
ATTTCAGATACATACTTGAC+GGG 0.514182 4_4:+14660902 Msa0671410:intron
ACTATCACGGTTATAGGCTG+TGG 0.515721 4_4:+14662173 Msa0671410:CDS
ATAGGTTCCAACACAATCTC+CGG 0.517739 4_4:-14658456 None:intergenic
GTTGTTGGATTGAGATGAAA+GGG 0.518101 4_4:-14658090 None:intergenic
TATTTCAGATACATACTTGA+CGG 0.519370 4_4:+14660901 Msa0671410:intron
CTGGAAGTATTACATTGCCT+GGG 0.521222 4_4:+14658490 Msa0671410:CDS
TACATATGATGATCATAGAA+TGG 0.524324 4_4:+14664677 Msa0671410:CDS
GCAACCAAGGCTGCCGTCAA+AGG 0.525534 4_4:-14660343 None:intergenic
CAAGGACTTGAAAGTAATCA+GGG 0.532458 4_4:-14664776 None:intergenic
TTGGAAATTGTGATGTGGGT+AGG 0.533744 4_4:+14658385 Msa0671410:CDS
GCAGCCTTGGTTGCTGCAGG+TGG 0.537285 4_4:+14660352 Msa0671410:CDS
ATGTCATCCTTGGTATAGGT+TGG 0.542490 4_4:+14665920 Msa0671410:CDS
TGGGAAGGGAGGGCTTCCAG+GGG 0.543181 4_4:+14661035 Msa0671410:CDS
AGAAGCCTTCTCTTTGGAGA+AGG 0.543219 4_4:+14666254 Msa0671410:intron
TTGGGAAGGGAGGGCTTCCA+GGG 0.543947 4_4:+14661034 Msa0671410:CDS
TTTATTGGAAATTGTGATGT+GGG 0.544629 4_4:+14658381 Msa0671410:CDS
TTTATTAGTCGATGTAGTGG+TGG 0.545365 4_4:+14665843 Msa0671410:CDS
GTGTCTGGTCTTAAGCAACT+TGG 0.547127 4_4:+14660961 Msa0671410:CDS
TTGCTGCAGGTGGAAATACA+AGG 0.547549 4_4:+14660362 Msa0671410:CDS
ACCTGTTCGTATAATTGGGA+AGG 0.547613 4_4:+14661020 Msa0671410:CDS
CCAGTTACCATCAAAGATCC+CGG 0.548166 4_4:+14664735 Msa0671410:CDS
TTATTAGTCGATGTAGTGGT+GGG 0.548923 4_4:+14665844 Msa0671410:CDS
TTTACCACTCTTAAGAAGAT+GGG 0.550774 4_4:+14665796 Msa0671410:CDS
AAGAACGACGTCCGATGTGA+CGG 0.551131 4_4:-14665676 None:intergenic
GCTTCAAAATCACGCAACAA+TGG 0.552990 4_4:-14666346 None:intergenic
TTCGTATAATTGGGAAGGGA+GGG 0.553161 4_4:+14661025 Msa0671410:CDS
TTGCAGTACCGGCATTTCCA+AGG 0.558927 4_4:-14660315 None:intergenic
AAATGAGTATGTTCTTAAGA+AGG 0.562127 4_4:+14665951 Msa0671410:CDS
CATCTTCCACACGAAGTCCA+AGG 0.563075 4_4:-14660216 None:intergenic
TTGGACAAAGACTTAGACCC+AGG 0.563173 4_4:-14658507 None:intergenic
AGATGGGAGCTAAAGTTACA+TGG 0.567569 4_4:+14663059 Msa0671410:CDS
CCTTCAACAAAAGCATTGCC+GGG 0.568002 4_4:-14662098 None:intergenic
GCCTTGCAAGACTTTCCGAC+CGG 0.570695 4_4:-14663125 None:intergenic
AACACAGTGCTAATTGGGAC+AGG 0.576861 4_4:+14661961 Msa0671410:CDS
TGATGATCATAGAATGGCCA+TGG 0.577715 4_4:+14664683 Msa0671410:CDS
GGTCCCACTGCTATTAGAGA+TGG 0.578119 4_4:+14663217 Msa0671410:CDS
CTTTATTGGAAATTGTGATG+TGG 0.579985 4_4:+14658380 Msa0671410:CDS
GCTGTTGTGGAAGGCAGTGG+TGG 0.582862 4_4:+14660256 Msa0671410:CDS
GGGAAGGGAGGGCTTCCAGG+GGG 0.584040 4_4:+14661036 Msa0671410:CDS
CTAGGAGCAACTGTTGAAGA+AGG 0.586237 4_4:+14664600 Msa0671410:CDS
GAAATTGTGATGTGGGTAGG+AGG 0.586580 4_4:+14658388 Msa0671410:CDS
AACAACCAAACAAGCTGTTG+TGG 0.587688 4_4:+14660243 Msa0671410:CDS
AGCAAGAAGCAAAATCCGAT+TGG 0.588144 4_4:-14658526 None:intergenic
ATCTTCCACACGAAGTCCAA+GGG 0.589211 4_4:-14660215 None:intergenic
GTTCGTATAATTGGGAAGGG+AGG 0.589281 4_4:+14661024 Msa0671410:CDS
GCTTCTTGCTGCTCTCTCTG+AGG 0.591126 4_4:+14658539 Msa0671410:CDS
GGTTGTTGGATTGAGATGAA+AGG 0.591329 4_4:-14658091 None:intergenic
ACCAAACAAGCTGTTGTGGA+AGG 0.592554 4_4:+14660247 Msa0671410:CDS
TCAGAAGCACGCAACAATGA+CGG 0.594186 4_4:-14666301 None:intergenic
GGATATTCATTACATGCTTG+AGG 0.596449 4_4:+14660183 Msa0671410:CDS
ATTTCCACCTGCAGCAACCA+AGG 0.596983 4_4:-14660356 None:intergenic
CAAGCTGTTGTGGAAGGCAG+TGG 0.597069 4_4:+14660253 Msa0671410:CDS
AAAGACCCTTGGACTTCGTG+TGG 0.599980 4_4:+14660210 Msa0671410:CDS
TCCGGTCGGAAAGTCTTGCA+AGG 0.600579 4_4:+14663124 Msa0671410:CDS
AACAACCTTCTCCAAAGAGA+AGG 0.600930 4_4:-14666259 None:intergenic
GACAGGTTCTTGGTCCATGG+AGG 0.603780 4_4:+14661978 Msa0671410:CDS
AGTTACTGGCGGAACTATCA+CGG 0.604333 4_4:+14662160 Msa0671410:CDS
GGCGTAGCGTCTAACTCACT+GGG 0.606070 4_4:+14665817 Msa0671410:CDS
TGCAACAACAGCAAGTGTCA+TGG 0.606229 4_4:-14663182 None:intergenic
CTATCACGGTTATAGGCTGT+GGG 0.615693 4_4:+14662174 Msa0671410:CDS
CTCAATCTCAACATCACCAA+GGG 0.617444 4_4:-14661862 None:intergenic
CCTGTTCGTATAATTGGGAA+GGG 0.621907 4_4:+14661021 Msa0671410:CDS
AATCTGCACAGAACTCAGAA+AGG 0.627914 4_4:+14664327 Msa0671410:CDS
TTCCCAATTATACGAACAGG+TGG 0.629982 4_4:-14661018 None:intergenic
TGCGGCGCCGGAGATTGTGT+TGG 0.631894 4_4:+14658449 Msa0671410:CDS
TACGCCCATCTTCTTAAGAG+TGG 0.632094 4_4:-14665800 None:intergenic
TCAACATCACCAAGGGCCAA+CGG 0.634886 4_4:-14661855 None:intergenic
CTCCACGGGATTCTTCCGGT+CGG 0.638233 4_4:+14663110 Msa0671410:CDS
GGGTGTTTGTGAGCTTGGAA+CGG 0.638632 4_4:-14665649 None:intergenic
GTCAACTAATAATAGTACAA+TGG 0.638693 4_4:-14658057 None:intergenic
GTGACATTCAATTTCTCAGG+TGG 0.643818 4_4:-14664645 None:intergenic
ATACCATCTCTAATAGCAGT+GGG 0.648802 4_4:-14663220 None:intergenic
GCTGGTGCAGCAGTTACTGG+CGG 0.649225 4_4:+14662149 Msa0671410:CDS
CATACCATCTCTAATAGCAG+TGG 0.651100 4_4:-14663221 None:intergenic
AGCAGCAAGAGAAAATGCCA+TGG 0.651648 4_4:-14664700 None:intergenic
ATTGGTCTCTCTCTCATTCG+GGG 0.653517 4_4:-14660928 None:intergenic
TCATTGAGGTCAAGCATTTG+GGG 0.656177 4_4:+14658318 Msa0671410:CDS
AACACCCATAACCGTCACAT+CGG 0.658005 4_4:+14665665 Msa0671410:CDS
TTCCGACCGGAAGAATCCCG+TGG 0.664740 4_4:-14663112 None:intergenic
TGTGTATCCAACCTATACCA+AGG 0.666232 4_4:-14665927 None:intergenic
AAAACAGTGTAACTGTTACC+GGG 0.672809 4_4:+14663086 Msa0671410:CDS
CTGTTGTGGAAGGCAGTGGT+GGG 0.674586 4_4:+14660257 Msa0671410:CDS
TCTCAATCTCAACATCACCA+AGG 0.684401 4_4:-14661863 None:intergenic
AGATCAAAGAATCTTCAACA+AGG 0.705760 4_4:-14666392 None:intergenic
TTGTTGGATTGAGATGAAAG+GGG 0.707041 4_4:-14658089 None:intergenic
TTTCAGATACATACTTGACG+GGG 0.713014 4_4:+14660903 Msa0671410:intron
CGACCGGAAGAATCCCGTGG+AGG 0.725610 4_4:-14663109 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTAAATTTTATTTATG+TGG + chr4_4:14658727-14658746 Msa0671410:intron 10.0%
!!! ATATTTAAAATAGGTAATTA+AGG + chr4_4:14659306-14659325 Msa0671410:intron 10.0%
!!! TTATTTTTTTGTTTGTGATT+TGG - chr4_4:14658173-14658192 None:intergenic 15.0%
!!! TTAAATTTTATTTATGTGGT+TGG + chr4_4:14658731-14658750 Msa0671410:intron 15.0%
!!! AATTTTGATAGTATTGATTT+TGG + chr4_4:14659118-14659137 Msa0671410:intron 15.0%
!!! TGAAGACAAATATTTAAAAT+AGG + chr4_4:14659297-14659316 Msa0671410:intron 15.0%
!!! TCATATAGTTATTCTTATTT+TGG + chr4_4:14659569-14659588 Msa0671410:intron 15.0%
!! TACAATGATAAGTTATAATT+TGG + chr4_4:14659620-14659639 Msa0671410:intron 15.0%
!! ACAATGATAAGTTATAATTT+GGG + chr4_4:14659621-14659640 Msa0671410:intron 15.0%
!! AAAATATATTTAATTCACCA+TGG + chr4_4:14660396-14660415 Msa0671410:intron 15.0%
!! TTCTTCATAAAATACATTAT+AGG - chr4_4:14660761-14660780 None:intergenic 15.0%
!!! TATATTTTAGCATGTTTTTT+TGG + chr4_4:14660842-14660861 Msa0671410:intron 15.0%
!! ATAACTATTATAATACACTA+CGG + chr4_4:14661357-14661376 Msa0671410:intron 15.0%
!!! ATTTCTTTTCAAAGAAAAAT+TGG - chr4_4:14661662-14661681 None:intergenic 15.0%
!!! TAATAATTATTGAGTATTGT+CGG - chr4_4:14662355-14662374 None:intergenic 15.0%
!! ATTATCATATTCACATAAAA+GGG - chr4_4:14662653-14662672 None:intergenic 15.0%
!! TATTATCATATTCACATAAA+AGG - chr4_4:14662654-14662673 None:intergenic 15.0%
!! ATAATATCTTTCCAAATAAA+AGG + chr4_4:14662668-14662687 Msa0671410:intron 15.0%
!!! AAACATTTAATCCTTTTATT+TGG - chr4_4:14662682-14662701 None:intergenic 15.0%
!! TAAACATATAGTCATATATT+TGG - chr4_4:14662757-14662776 None:intergenic 15.0%
!!! ATTTAGCTGAATTATTTTTT+CGG + chr4_4:14662815-14662834 Msa0671410:intron 15.0%
!! CGATAATAATTAAGAAAATA+TGG - chr4_4:14663428-14663447 None:intergenic 15.0%
!!! GATATGATTTTTTTTTTATG+TGG + chr4_4:14663672-14663691 Msa0671410:intron 15.0%
!!! TTCAAAACTACATTTTTTTA+AGG + chr4_4:14663777-14663796 Msa0671410:intron 15.0%
!!! TCAAAACTACATTTTTTTAA+GGG + chr4_4:14663778-14663797 Msa0671410:intron 15.0%
!!! TAATTTGTATTGTTGAAATT+AGG + chr4_4:14665074-14665093 Msa0671410:intron 15.0%
!! TAAATTTGTAAAATCACTTT+CGG + chr4_4:14665490-14665509 Msa0671410:intron 15.0%
!!! TGATGTTTTGATGATAATAT+TGG - chr4_4:14657936-14657955 None:intergenic 20.0%
!! AAATAATTTGAGTGAATAGA+TGG - chr4_4:14658021-14658040 None:intergenic 20.0%
!! AACTTTAAGCAAAATTGAAA+TGG + chr4_4:14658203-14658222 Msa0671410:exon 20.0%
!! TTATGTATTTAGTGTATGTT+TGG + chr4_4:14658589-14658608 Msa0671410:intron 20.0%
!! AAGGTAAAGTAATTTATGTT+TGG + chr4_4:14658810-14658829 Msa0671410:intron 20.0%
!! ATAATTAATCTTGACATGTT+TGG - chr4_4:14658964-14658983 None:intergenic 20.0%
!!! TTACACTTTTGTACATTTTA+TGG + chr4_4:14659029-14659048 Msa0671410:intron 20.0%
!!! AATTGATTCTTAACAATTCA+TGG + chr4_4:14659192-14659211 Msa0671410:intron 20.0%
!!! CCTTTATTAAATTACTTTTG+TGG - chr4_4:14659428-14659447 None:intergenic 20.0%
!! CCACAAAAGTAATTTAATAA+AGG + chr4_4:14659425-14659444 Msa0671410:intron 20.0%
!! ATAGTTGATTGAAAAATCAA+TGG - chr4_4:14660005-14660024 None:intergenic 20.0%
!! TTATAAAGTTCATCCATATT+AGG + chr4_4:14660678-14660697 Msa0671410:intron 20.0%
!!! TAATAGTTATTCTAAAGATG+TGG - chr4_4:14661347-14661366 None:intergenic 20.0%
!! TCTAATTAGAAAACCAAATA+GGG - chr4_4:14661585-14661604 None:intergenic 20.0%
!! ATCTAATTAGAAAACCAAAT+AGG - chr4_4:14661586-14661605 None:intergenic 20.0%
!! TGGGATAATAAGATTAAAAA+TGG - chr4_4:14661766-14661785 None:intergenic 20.0%
!!! GATGATATTGATTCATATAA+AGG - chr4_4:14662272-14662291 None:intergenic 20.0%
!! GAACAAATATAAAAAGATAG+AGG - chr4_4:14662320-14662339 None:intergenic 20.0%
!! AGTAGTAAAATATCATTATC+TGG - chr4_4:14662433-14662452 None:intergenic 20.0%
!!! ATTTTATATGGAACATTGTA+GGG + chr4_4:14662495-14662514 Msa0671410:intron 20.0%
!! TTTCTAATTTCTTCATTGTA+AGG + chr4_4:14662567-14662586 Msa0671410:intron 20.0%
!! ATGAGTAATAGATAAAAGTA+AGG - chr4_4:14662605-14662624 None:intergenic 20.0%
!!! TTTGGTAATGAACAATTTAA+GGG - chr4_4:14662713-14662732 None:intergenic 20.0%
!!! ATTTGGTAATGAACAATTTA+AGG - chr4_4:14662714-14662733 None:intergenic 20.0%
!! TTTAGTGTAATCATTGTATT+TGG - chr4_4:14662731-14662750 None:intergenic 20.0%
!! TATATGACTATATGTTTACA+AGG + chr4_4:14662759-14662778 Msa0671410:intron 20.0%
!!! TAACTTTGTCCATTTTTTAA+AGG + chr4_4:14663006-14663025 Msa0671410:intron 20.0%
!!! AACTTTGTCCATTTTTTAAA+GGG + chr4_4:14663007-14663026 Msa0671410:intron 20.0%
!!! CAAAACTACATTTTTTTAAG+GGG + chr4_4:14663779-14663798 Msa0671410:intron 20.0%
!!! TTTTGTAAAATGTGAACAAA+AGG + chr4_4:14663935-14663954 Msa0671410:intron 20.0%
!! TTTGTAAAATGTGAACAAAA+GGG + chr4_4:14663936-14663955 Msa0671410:intron 20.0%
!!! TTAAAATCAATTTTTTGCCA+TGG - chr4_4:14665166-14665185 None:intergenic 20.0%
!!! TTAAAGCTAAATTTTGTCTT+GGG - chr4_4:14665281-14665300 None:intergenic 20.0%
!! TAGATAAATCAATTCTAATC+AGG + chr4_4:14665317-14665336 Msa0671410:intron 20.0%
!! AGATAAATCAATTCTAATCA+GGG + chr4_4:14665318-14665337 Msa0671410:intron 20.0%
!! CTAAAAGTGAATTGAAAATT+AGG + chr4_4:14665393-14665412 Msa0671410:intron 20.0%
!!! ATTTATTTCTTCATTCAATG+TGG + chr4_4:14665421-14665440 Msa0671410:intron 20.0%
!! TTTGAACACATTTTCCTTTT+TGG + chr4_4:14657970-14657989 Msa0671410:five_prime_UTR 25.0%
! GTCAACTAATAATAGTACAA+TGG - chr4_4:14658060-14658079 None:intergenic 25.0%
!! TTTTTCTGTATACCTCTTTT+GGG - chr4_4:14658133-14658152 None:intergenic 25.0%
!!! TTTTTTCTGTATACCTCTTT+TGG - chr4_4:14658134-14658153 None:intergenic 25.0%
!!! ATTGTTGATTTTGCTTAACT+GGG - chr4_4:14658229-14658248 None:intergenic 25.0%
! CATAAAAATGGAGTCTTTAT+TGG + chr4_4:14658366-14658385 Msa0671410:CDS 25.0%
! TTTATTGGAAATTGTGATGT+GGG + chr4_4:14658381-14658400 Msa0671410:CDS 25.0%
! TTATGTATTTGATGTGTGTT+TGG + chr4_4:14658660-14658679 Msa0671410:intron 25.0%
!!! AATCTTGATTTTGGAAGTTT+TGG + chr4_4:14658701-14658720 Msa0671410:intron 25.0%
! TCTAACTTGAAGCTAAAAAT+TGG - chr4_4:14658902-14658921 None:intergenic 25.0%
!! AATGTACAAAAGTGTAAGTT+TGG - chr4_4:14659026-14659045 None:intergenic 25.0%
! TAGACATGTAATTACCAAAA+AGG + chr4_4:14659245-14659264 Msa0671410:intron 25.0%
!! TAACACAGATAAAACCTTTT+TGG - chr4_4:14659262-14659281 None:intergenic 25.0%
! TTATCATTGTAGATCTTTCA+TGG - chr4_4:14659611-14659630 None:intergenic 25.0%
! ATGATAAGTTATAATTTGGG+AGG + chr4_4:14659624-14659643 Msa0671410:intron 25.0%
!! TATTTTGTCATACACACTTT+CGG - chr4_4:14659714-14659733 None:intergenic 25.0%
! AAGTACACTTTCATAAACAT+GGG + chr4_4:14659744-14659763 Msa0671410:intron 25.0%
! AAAGTGAGAAGCTAAATTAT+CGG - chr4_4:14659786-14659805 None:intergenic 25.0%
!!! TATTCTACTGTGTTTTATTC+AGG + chr4_4:14660126-14660145 Msa0671410:intron 25.0%
!!! ATTCTACTGTGTTTTATTCA+GGG + chr4_4:14660127-14660146 Msa0671410:intron 25.0%
! TTAACTTCATCTTTAGATTC+AGG - chr4_4:14660289-14660308 None:intergenic 25.0%
! GATGAAGTTAATTTATTCCT+TGG + chr4_4:14660298-14660317 Msa0671410:CDS 25.0%
! TAGAAAATGTTGTCAATTAG+CGG + chr4_4:14660511-14660530 Msa0671410:intron 25.0%
! GAACTTTATAACAGGATAAA+AGG - chr4_4:14660669-14660688 None:intergenic 25.0%
! ATATGGATGAACTTTATAAC+AGG - chr4_4:14660677-14660696 None:intergenic 25.0%
! TTTAAGAAGATTGCCTAATA+TGG - chr4_4:14660694-14660713 None:intergenic 25.0%
! AATAGATCTATTTAGAGACT+CGG - chr4_4:14660869-14660888 None:intergenic 25.0%
! TATTTCAGATACATACTTGA+CGG + chr4_4:14660901-14660920 Msa0671410:intron 25.0%
! AAGCGAAGATAAATAAAAAG+TGG - chr4_4:14661170-14661189 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG - chr4_4:14661383-14661402 None:intergenic 25.0%
! CTTATACATAAGCACTTATA+TGG - chr4_4:14661417-14661436 None:intergenic 25.0%
!! AAAATGGATCAAATGACTTT+TGG - chr4_4:14661750-14661769 None:intergenic 25.0%
! TTAATCTCATTGCATTAAGA+CGG - chr4_4:14662052-14662071 None:intergenic 25.0%
!! ATTGATTCATATAAAGGACA+AGG - chr4_4:14662266-14662285 None:intergenic 25.0%
! AATATCATCATGTGAACAAT+GGG + chr4_4:14662283-14662302 Msa0671410:intron 25.0%
! AAAAAGATAGAGGACAAAAA+TGG - chr4_4:14662310-14662329 None:intergenic 25.0%
!! TGATATTTTACTACTCAAAC+TGG + chr4_4:14662438-14662457 Msa0671410:intron 25.0%
!! CATTTTATATGGAACATTGT+AGG + chr4_4:14662494-14662513 Msa0671410:intron 25.0%
!! TTACATCTCCCTTTAAAAAA+TGG - chr4_4:14663018-14663037 None:intergenic 25.0%
! AGTATCTTAGATTATCTCAT+AGG + chr4_4:14663394-14663413 Msa0671410:intron 25.0%
! ATGATGTGATTGTTTGAAAA+TGG - chr4_4:14663511-14663530 None:intergenic 25.0%
!! TACAGTACTTTTCTTATCTT+TGG + chr4_4:14663575-14663594 Msa0671410:intron 25.0%
! CAATAATCATGATGCTTAAA+AGG - chr4_4:14663629-14663648 None:intergenic 25.0%
!! CTTTTAAGCATCATGATTAT+TGG + chr4_4:14663627-14663646 Msa0671410:intron 25.0%
! ACTATTTACAACTGTTATTG+AGG + chr4_4:14663832-14663851 Msa0671410:intron 25.0%
! CTATTTACAACTGTTATTGA+GGG + chr4_4:14663833-14663852 Msa0671410:intron 25.0%
! TATTTACAACTGTTATTGAG+GGG + chr4_4:14663834-14663853 Msa0671410:intron 25.0%
! TTGTAAAATGTGAACAAAAG+GGG + chr4_4:14663937-14663956 Msa0671410:intron 25.0%
! ATTTATTAACTTAACCCACT+TGG + chr4_4:14664411-14664430 Msa0671410:intron 25.0%
! TTTATTAACTTAACCCACTT+GGG + chr4_4:14664412-14664431 Msa0671410:intron 25.0%
!! CTAGTTTAGCTTCTTAAAAA+AGG + chr4_4:14664523-14664542 Msa0671410:intron 25.0%
! TACATATGATGATCATAGAA+TGG + chr4_4:14664677-14664696 Msa0671410:CDS 25.0%
! AGCATTCTTGTATATTAAGT+AGG + chr4_4:14664818-14664837 Msa0671410:intron 25.0%
!!! ACAAAGTTGTGAGTATTTTT+TGG + chr4_4:14665009-14665028 Msa0671410:intron 25.0%
! TTTCTTACTATTCACTTGTA+AGG + chr4_4:14665042-14665061 Msa0671410:intron 25.0%
!! CTTAAAGCTAAATTTTGTCT+TGG - chr4_4:14665282-14665301 None:intergenic 25.0%
! AATAGATACTGATATGGTTA+AGG - chr4_4:14665345-14665364 None:intergenic 25.0%
! GTCTTAAATAGATACTGATA+TGG - chr4_4:14665351-14665370 None:intergenic 25.0%
!!! ATAAAGGTTTTGATGAACAT+AGG - chr4_4:14665720-14665739 None:intergenic 25.0%
! TTCATCAAAACCTTTATCAA+TGG + chr4_4:14665723-14665742 Msa0671410:intron 25.0%
! CGAAATATTTCCATTGATAA+AGG - chr4_4:14665736-14665755 None:intergenic 25.0%
!! AATTTTATTAGTCGATGTAG+TGG + chr4_4:14665840-14665859 Msa0671410:CDS 25.0%
! AAAGAAGATCTTACTTTCTT+TGG - chr4_4:14665871-14665890 None:intergenic 25.0%
! AAATGAGTATGTTCTTAAGA+AGG + chr4_4:14665951-14665970 Msa0671410:CDS 25.0%
!! TCTCTTTGAGTTTCTTATTA+TGG + chr4_4:14666227-14666246 Msa0671410:intron 25.0%
GTGTTCAAATTCTTGACTAT+AGG - chr4_4:14657959-14657978 None:intergenic 30.0%
!! AACACATTTTCCTTTTTGGT+AGG + chr4_4:14657974-14657993 Msa0671410:five_prime_UTR 30.0%
! TTTTCTGTATACCTCTTTTG+GGG - chr4_4:14658132-14658151 None:intergenic 30.0%
!!! GATTGTTGATTTTGCTTAAC+TGG - chr4_4:14658230-14658249 None:intergenic 30.0%
!! GAAACTGATTTTGCTGAATT+GGG - chr4_4:14658300-14658319 None:intergenic 30.0%
!! TGAAACTGATTTTGCTGAAT+TGG - chr4_4:14658301-14658320 None:intergenic 30.0%
! TGGAGTTTGAAGCATAAAAA+TGG + chr4_4:14658354-14658373 Msa0671410:CDS 30.0%
CTTTATTGGAAATTGTGATG+TGG + chr4_4:14658380-14658399 Msa0671410:CDS 30.0%
! TATTTATGTGGTTGGTTATG+TGG + chr4_4:14658739-14658758 Msa0671410:intron 30.0%
!! GATTTTGAGTGAATTGATTC+CGG + chr4_4:14658773-14658792 Msa0671410:intron 30.0%
! CTTCAAGTTAGAATCAATTG+TGG + chr4_4:14658910-14658929 Msa0671410:intron 30.0%
!!! TACACCTCTAGAATCAATTT+TGG + chr4_4:14658983-14659002 Msa0671410:intron 30.0%
! GACTAAAAGTGATTTGTGTT+TGG + chr4_4:14659155-14659174 Msa0671410:intron 30.0%
! GTTTTATCTGTGTTATACGT+TGG + chr4_4:14659267-14659286 Msa0671410:intron 30.0%
! TACCTAGTCAAACAATTTTG+TGG - chr4_4:14659523-14659542 None:intergenic 30.0%
! TGTTTATGAAAGTGTACTTC+AGG - chr4_4:14659743-14659762 None:intergenic 30.0%
GAAGTACACTTTCATAAACA+TGG + chr4_4:14659743-14659762 Msa0671410:intron 30.0%
AGTACACTTTCATAAACATG+GGG + chr4_4:14659745-14659764 Msa0671410:intron 30.0%
! AATTTAGCTTCTCACTTTAG+TGG + chr4_4:14659788-14659807 Msa0671410:intron 30.0%
TATCATTGCACTTTATTCTG+TGG + chr4_4:14660025-14660044 Msa0671410:intron 30.0%
TAGAATAGTCTCTATTCAAC+AGG - chr4_4:14660113-14660132 None:intergenic 30.0%
AATTTATTCCTTGGAAATGC+CGG + chr4_4:14660307-14660326 Msa0671410:CDS 30.0%
TTGGTAAATAATGGTTGTAG+AGG + chr4_4:14660432-14660451 Msa0671410:intron 30.0%
GATAGCAGAAAATAAAACAG+TGG - chr4_4:14660582-14660601 None:intergenic 30.0%
!!! CTGTTTTATTTTCTGCTATC+TGG + chr4_4:14660582-14660601 Msa0671410:intron 30.0%
! TTTTATGAAGAATGCACCAA+AGG + chr4_4:14660769-14660788 Msa0671410:intron 30.0%
ATTTCAGATACATACTTGAC+GGG + chr4_4:14660902-14660921 Msa0671410:intron 30.0%
CGGCATAAAATGAAAACTAA+TGG - chr4_4:14661075-14661094 None:intergenic 30.0%
TGTGTTTATATCACATCCAT+TGG + chr4_4:14661118-14661137 Msa0671410:intron 30.0%
! AGTTATTCTAAAGATGTGGA+GGG - chr4_4:14661343-14661362 None:intergenic 30.0%
! TAGTTATTCTAAAGATGTGG+AGG - chr4_4:14661344-14661363 None:intergenic 30.0%
ATGTATTTGAGCTTATCTAC+TGG - chr4_4:14661549-14661568 None:intergenic 30.0%
TCAAATACATCAATCCAAAC+AGG + chr4_4:14661559-14661578 Msa0671410:intron 30.0%
TACCATTCATATGCCTATTA+TGG + chr4_4:14661627-14661646 Msa0671410:intron 30.0%
ATCCATAATAGGCATATGAA+TGG - chr4_4:14661632-14661651 None:intergenic 30.0%
!! AATGACTTTTGGAGAGAATA+AGG - chr4_4:14661739-14661758 None:intergenic 30.0%
TTCAAAGTCATTTCGACATA+CGG - chr4_4:14661912-14661931 None:intergenic 30.0%
AAAGTACAAGTAGGTTTCTA+CGG + chr4_4:14662004-14662023 Msa0671410:intron 30.0%
!!! TAACTGTTGTTTTTCGTATC+AGG + chr4_4:14662072-14662091 Msa0671410:intron 30.0%
CAATATCATCATGTGAACAA+TGG + chr4_4:14662282-14662301 Msa0671410:intron 30.0%
!! ATTGTCAGCGTCATTTTATA+TGG + chr4_4:14662483-14662502 Msa0671410:intron 30.0%
! TTTCCTTTTGTCTTTGTTCA+TGG + chr4_4:14662525-14662544 Msa0671410:intron 30.0%
! TTCCTTTTGTCTTTGTTCAT+GGG + chr4_4:14662526-14662545 Msa0671410:intron 30.0%
GAAATTAGAAACACAAACGA+CGG - chr4_4:14662558-14662577 None:intergenic 30.0%
!! TTTTTCGGTGAGTTCTTTAT+TGG + chr4_4:14662830-14662849 Msa0671410:intron 30.0%
!! TCTTTGAGTTGATGATTAGA+AGG + chr4_4:14662857-14662876 Msa0671410:intron 30.0%
! ATGATTAGAAGGAAGTATGT+AGG + chr4_4:14662868-14662887 Msa0671410:intron 30.0%
!! AAGATGTTCTAGGATAAGAT+CGG - chr4_4:14663339-14663358 None:intergenic 30.0%
! GACATAATCTAAGATGTTCT+AGG - chr4_4:14663349-14663368 None:intergenic 30.0%
TTTCTTACTGTATATTCCAG+TGG + chr4_4:14663484-14663503 Msa0671410:intron 30.0%
TTGGAATCTCGAGTATAAAT+TGG + chr4_4:14663646-14663665 Msa0671410:intron 30.0%
!!! AAGTTTTTGTTTCGAGTTGA+AGG + chr4_4:14663721-14663740 Msa0671410:intron 30.0%
!!! AGTTTTTGTTTCGAGTTGAA+GGG + chr4_4:14663722-14663741 Msa0671410:intron 30.0%
TGTAAAATGTGAACAAAAGG+GGG + chr4_4:14663938-14663957 Msa0671410:intron 30.0%
! TTTTCTCATGTAAGCAAAAC+TGG + chr4_4:14663969-14663988 Msa0671410:intron 30.0%
TAACTGAATGTAACATGTGT+TGG + chr4_4:14664092-14664111 Msa0671410:intron 30.0%
! AATGTAACATGTGTTGGTAT+TGG + chr4_4:14664098-14664117 Msa0671410:intron 30.0%
! GTATTTCATCTATTTTCCAG+TGG + chr4_4:14664267-14664286 Msa0671410:intron 30.0%
TTAGAAACTACAAAGGAAGT+AGG - chr4_4:14664366-14664385 None:intergenic 30.0%
ACTTTGTTGATATTTCAGCT+AGG + chr4_4:14664582-14664601 Msa0671410:intron 30.0%
! GTGTGTATTTCATTTTACCA+TGG + chr4_4:14665146-14665165 Msa0671410:intron 30.0%
ACACATATGTTACATGATCA+TGG - chr4_4:14665623-14665642 None:intergenic 30.0%
TTTACCACTCTTAAGAAGAT+GGG + chr4_4:14665796-14665815 Msa0671410:CDS 30.0%
CATTCATATTATGTCATCCT+TGG + chr4_4:14665910-14665929 Msa0671410:CDS 30.0%
TATTATGTCATCCTTGGTAT+AGG + chr4_4:14665916-14665935 Msa0671410:CDS 30.0%
GAGATTGTCAGAATATAAAG+AGG + chr4_4:14665987-14666006 Msa0671410:intron 30.0%
ATGAACTTCACCTACCAAAA+AGG - chr4_4:14657987-14658006 None:intergenic 35.0%
TTGTTGGATTGAGATGAAAG+GGG - chr4_4:14658092-14658111 None:intergenic 35.0%
GTTGTTGGATTGAGATGAAA+GGG - chr4_4:14658093-14658112 None:intergenic 35.0%
! TTTCTGTATACCTCTTTTGG+GGG - chr4_4:14658131-14658150 None:intergenic 35.0%
! TTTTGCTGAATTGGGTTTGT+TGG - chr4_4:14658292-14658311 None:intergenic 35.0%
CAGCAAAATCAGTTTCATTG+AGG + chr4_4:14658304-14658323 Msa0671410:CDS 35.0%
TTTCATTGAGGTCAAGCATT+TGG + chr4_4:14658316-14658335 Msa0671410:CDS 35.0%
TTCATTGAGGTCAAGCATTT+GGG + chr4_4:14658317-14658336 Msa0671410:CDS 35.0%
! TTTGGGGTTCTTCAAAATCA+TGG + chr4_4:14658334-14658353 Msa0671410:CDS 35.0%
AGATTGTGTTGGAACCTATT+AGG + chr4_4:14658460-14658479 Msa0671410:CDS 35.0%
GATTGTGTTGGAACCTATTA+GGG + chr4_4:14658461-14658480 Msa0671410:CDS 35.0%
!! TTAGTGTATGTTTGGTTCTG+CGG + chr4_4:14658597-14658616 Msa0671410:intron 35.0%
! GACGACGAAAATCTTGATTT+TGG + chr4_4:14658692-14658711 Msa0671410:intron 35.0%
CAAGTTAGAATCAATTGTGG+AGG + chr4_4:14658913-14658932 Msa0671410:intron 35.0%
! AGAGCCAAAATTGATTCTAG+AGG - chr4_4:14658990-14659009 None:intergenic 35.0%
! ATGGTTCTGTGATTAGAAGT+TGG + chr4_4:14659048-14659067 Msa0671410:intron 35.0%
ATTATCTTTACGCGTGTGTT+TGG + chr4_4:14659076-14659095 Msa0671410:intron 35.0%
! AAATCGATTCTTCATGAAGC+AGG - chr4_4:14659401-14659420 None:intergenic 35.0%
!! GCTTCATGAAGAATCGATTT+TGG + chr4_4:14659401-14659420 Msa0671410:intron 35.0%
!! GACTATCTTACAAAGGTGTT+TGG - chr4_4:14659455-14659474 None:intergenic 35.0%
CTAACGTGACTATCTTACAA+AGG - chr4_4:14659462-14659481 None:intergenic 35.0%
AGATGAAAAAAACCTGCTTC+AGG + chr4_4:14659480-14659499 Msa0671410:intron 35.0%
!! CTTCAGGAAGAATCGATTTT+TGG + chr4_4:14659496-14659515 Msa0671410:intron 35.0%
GACCACAAAATTGTTTGACT+AGG + chr4_4:14659518-14659537 Msa0671410:intron 35.0%
! GTACATCTGAAGTCATGATA+GGG - chr4_4:14659661-14659680 None:intergenic 35.0%
! TGTACATCTGAAGTCATGAT+AGG - chr4_4:14659662-14659681 None:intergenic 35.0%
CAGAATGTGAATTGTGGATT+TGG - chr4_4:14659816-14659835 None:intergenic 35.0%
TGGATTCAGAATGTGAATTG+TGG - chr4_4:14659822-14659841 None:intergenic 35.0%
!! AAGTGAGTGTTGAACTTTAG+AGG + chr4_4:14659878-14659897 Msa0671410:intron 35.0%
ATTCAACAGGACATCTATGA+AGG - chr4_4:14660100-14660119 None:intergenic 35.0%
!! AGAGAACTTGTTAGATAGTG+AGG + chr4_4:14660162-14660181 Msa0671410:CDS 35.0%
GGATATTCATTACATGCTTG+AGG + chr4_4:14660183-14660202 Msa0671410:CDS 35.0%
!! GAAGCAGTGTTGGTAAATAA+TGG + chr4_4:14660423-14660442 Msa0671410:intron 35.0%
! ACCTCACTACTTTCTTTTGT+AGG + chr4_4:14660814-14660833 Msa0671410:intron 35.0%
TCCTACAAAAGAAAGTAGTG+AGG - chr4_4:14660818-14660837 None:intergenic 35.0%
TTTCAGATACATACTTGACG+GGG + chr4_4:14660903-14660922 Msa0671410:intron 35.0%
!! GCAGATGTTGATTGTTTTCT+TGG + chr4_4:14660985-14661004 Msa0671410:CDS 35.0%
GTGATATAAACACACAAGCA+CGG - chr4_4:14661112-14661131 None:intergenic 35.0%
ACATCAGTTACAGTGAAATG+TGG - chr4_4:14661209-14661228 None:intergenic 35.0%
TGACTGTGCATTTGAATTAC+AGG - chr4_4:14661241-14661260 None:intergenic 35.0%
TGCTTTATGAACTTCGCTAT+TGG + chr4_4:14661283-14661302 Msa0671410:intron 35.0%
GCTTTATGAACTTCGCTATT+GGG + chr4_4:14661284-14661303 Msa0671410:intron 35.0%
! GTTATTCTAAAGATGTGGAG+GGG - chr4_4:14661342-14661361 None:intergenic 35.0%
! AACTGTTTTCTAAGCTCTCA+GGG + chr4_4:14661468-14661487 Msa0671410:intron 35.0%
TAAGCACTTATGAGACTGTT+TGG - chr4_4:14661524-14661543 None:intergenic 35.0%
TAGAAAGGATATACAGGTGA+GGG - chr4_4:14661609-14661628 None:intergenic 35.0%
GAATGGTAGAAAGGATATAC+AGG - chr4_4:14661615-14661634 None:intergenic 35.0%
TAGGCATATGAATGGTAGAA+AGG - chr4_4:14661624-14661643 None:intergenic 35.0%
!! CGAAATGACTTTGAAGTTGA+TGG + chr4_4:14661917-14661936 Msa0671410:CDS 35.0%
CAGTTTACAGGTATATATGC+TGG + chr4_4:14662202-14662221 Msa0671410:intron 35.0%
ATCCCATGAACAAAGACAAA+AGG - chr4_4:14662531-14662550 None:intergenic 35.0%
ATATTCACATAAAAGGGACG+AGG - chr4_4:14662647-14662666 None:intergenic 35.0%
AGAATTGAGAAGTTGGATAG+TGG - chr4_4:14662908-14662927 None:intergenic 35.0%
TGCTGAAGTTCTTGAAAAGA+TGG + chr4_4:14663042-14663061 Msa0671410:CDS 35.0%
GCTGAAGTTCTTGAAAAGAT+GGG + chr4_4:14663043-14663062 Msa0671410:CDS 35.0%
GAAAACAGTGTAACTGTTAC+CGG + chr4_4:14663085-14663104 Msa0671410:CDS 35.0%
AAAACAGTGTAACTGTTACC+GGG + chr4_4:14663086-14663105 Msa0671410:CDS 35.0%
GTTGTTGCACTATATGCTAA+TGG + chr4_4:14663196-14663215 Msa0671410:CDS 35.0%
ATACCATCTCTAATAGCAGT+GGG - chr4_4:14663223-14663242 None:intergenic 35.0%
!! AGATGTTCTAGGATAAGATC+GGG - chr4_4:14663338-14663357 None:intergenic 35.0%
ATTGTTTGAAAATGGTCCAC+TGG - chr4_4:14663503-14663522 None:intergenic 35.0%
TTCTATAGTCAAGCAAAGCA+AGG - chr4_4:14663549-14663568 None:intergenic 35.0%
ACCATGTGCGATTGTATTAT+GGG - chr4_4:14663605-14663624 None:intergenic 35.0%
AACCATGTGCGATTGTATTA+TGG - chr4_4:14663606-14663625 None:intergenic 35.0%
! GTTTGACTTTCTAACCTCAA+GGG - chr4_4:14663873-14663892 None:intergenic 35.0%
! TGTTTGACTTTCTAACCTCA+AGG - chr4_4:14663874-14663893 None:intergenic 35.0%
AGACAAAGTATATGTAGCAC+TGG - chr4_4:14664169-14664188 None:intergenic 35.0%
CAGTGACTTAGAAACTACAA+AGG - chr4_4:14664373-14664392 None:intergenic 35.0%
GATGTGACATTCAATTTCTC+AGG - chr4_4:14664651-14664670 None:intergenic 35.0%
! GTAATCAGGGAATGTTTTTC+TGG - chr4_4:14664766-14664785 None:intergenic 35.0%
CAAGGACTTGAAAGTAATCA+GGG - chr4_4:14664779-14664798 None:intergenic 35.0%
TCAAGGACTTGAAAGTAATC+AGG - chr4_4:14664780-14664799 None:intergenic 35.0%
! ATTACTTTCAAGTCCTTGAG+AGG + chr4_4:14664781-14664800 Msa0671410:intron 35.0%
AATGCTTTGTAAACCTCTCA+AGG - chr4_4:14664797-14664816 None:intergenic 35.0%
TTTATCTCTCTCTCTCTGAA+AGG - chr4_4:14664983-14665002 None:intergenic 35.0%
!!! GTTGTGAGTATTTTTTGGCT+TGG + chr4_4:14665014-14665033 Msa0671410:intron 35.0%
GTTTACCACTCTTAAGAAGA+TGG + chr4_4:14665795-14665814 Msa0671410:intron 35.0%
TTTATTAGTCGATGTAGTGG+TGG + chr4_4:14665843-14665862 Msa0671410:CDS 35.0%
TTATTAGTCGATGTAGTGGT+GGG + chr4_4:14665844-14665863 Msa0671410:CDS 35.0%
GGTTGTTGGATTGAGATGAA+AGG - chr4_4:14658094-14658113 None:intergenic 40.0%
TCATTGAGGTCAAGCATTTG+GGG + chr4_4:14658318-14658337 Msa0671410:CDS 40.0%
TTGGAAATTGTGATGTGGGT+AGG + chr4_4:14658385-14658404 Msa0671410:CDS 40.0%
GAGGAATTCTGTTGTGTTGA+AGG + chr4_4:14658407-14658426 Msa0671410:CDS 40.0%
ATAGGTTCCAACACAATCTC+CGG - chr4_4:14658459-14658478 None:intergenic 40.0%
GAACCTATTAGGGAGATTTC+TGG + chr4_4:14658471-14658490 Msa0671410:CDS 40.0%
CTTCCAGAAATCTCCCTAAT+AGG - chr4_4:14658477-14658496 None:intergenic 40.0%
!! TCTGGAAGTATTACATTGCC+TGG + chr4_4:14658489-14658508 Msa0671410:CDS 40.0%
!! CTGGAAGTATTACATTGCCT+GGG + chr4_4:14658490-14658509 Msa0671410:CDS 40.0%
GGTCTAAGTCTTTGTCCAAT+CGG + chr4_4:14658511-14658530 Msa0671410:CDS 40.0%
AGCAAGAAGCAAAATCCGAT+TGG - chr4_4:14658529-14658548 None:intergenic 40.0%
!! ACCTTCATCTCACTTTTAGC+CGG - chr4_4:14658795-14658814 None:intergenic 40.0%
! AAATCGATTCTTCCTGAAGC+AGG - chr4_4:14659495-14659514 None:intergenic 40.0%
TGTTTGACTAGGTAGCCTAA+AGG + chr4_4:14659529-14659548 Msa0671410:intron 40.0%
! TATTCCAACACCTAGCCTTT+AGG - chr4_4:14659547-14659566 None:intergenic 40.0%
ACACTTTCATAAACATGGGG+TGG + chr4_4:14659748-14659767 Msa0671410:intron 40.0%
AACAACCAAACAAGCTGTTG+TGG + chr4_4:14660243-14660262 Msa0671410:CDS 40.0%
GGAGAAGATGTACTTTGTTG+TGG - chr4_4:14660648-14660667 None:intergenic 40.0%
AGAATGCACCAAAGGATCAT+CGG + chr4_4:14660777-14660796 Msa0671410:intron 40.0%
! AATTGGTCTCTCTCTCATTC+GGG - chr4_4:14660932-14660951 None:intergenic 40.0%
! CAATTGGTCTCTCTCTCATT+CGG - chr4_4:14660933-14660952 None:intergenic 40.0%
CCAGACACTAAATCTCCAAT+TGG - chr4_4:14660949-14660968 None:intergenic 40.0%
CCAATTGGAGATTTAGTGTC+TGG + chr4_4:14660946-14660965 Msa0671410:CDS 40.0%
TGTCCACCTGTTCGTATAAT+TGG + chr4_4:14661015-14661034 Msa0671410:CDS 40.0%
GTCCACCTGTTCGTATAATT+GGG + chr4_4:14661016-14661035 Msa0671410:CDS 40.0%
TTCCCAATTATACGAACAGG+TGG - chr4_4:14661021-14661040 None:intergenic 40.0%
ACCTGTTCGTATAATTGGGA+AGG + chr4_4:14661020-14661039 Msa0671410:CDS 40.0%
CCTGTTCGTATAATTGGGAA+GGG + chr4_4:14661021-14661040 Msa0671410:CDS 40.0%
TTCGTATAATTGGGAAGGGA+GGG + chr4_4:14661025-14661044 Msa0671410:CDS 40.0%
AGAGAACAAGTCTATGCCAA+TGG - chr4_4:14661137-14661156 None:intergenic 40.0%
! GGAGTGTAAAGCTCTAACTA+AGG + chr4_4:14661311-14661330 Msa0671410:intron 40.0%
!! TAATACACTACGGCCTTGTT+TGG + chr4_4:14661367-14661386 Msa0671410:intron 40.0%
! GAACTGTTTTCTAAGCTCTC+AGG + chr4_4:14661467-14661486 Msa0671410:intron 40.0%
AAAACCAAATAGGGCCTGTT+TGG - chr4_4:14661576-14661595 None:intergenic 40.0%
GTAGAAAGGATATACAGGTG+AGG - chr4_4:14661610-14661629 None:intergenic 40.0%
! TTGGTGACTCGATCCATAAT+AGG - chr4_4:14661643-14661662 None:intergenic 40.0%
!! GACTTTTGGAGAGAATAAGG+AGG - chr4_4:14661736-14661755 None:intergenic 40.0%
GTACTTGACTGCTTTGCTTA+TGG + chr4_4:14661827-14661846 Msa0671410:CDS 40.0%
CTCAATCTCAACATCACCAA+GGG - chr4_4:14661865-14661884 None:intergenic 40.0%
TCTCAATCTCAACATCACCA+AGG - chr4_4:14661866-14661885 None:intergenic 40.0%
TCGTAGAACACAGTGCTAAT+TGG + chr4_4:14661955-14661974 Msa0671410:CDS 40.0%
CGTAGAACACAGTGCTAATT+GGG + chr4_4:14661956-14661975 Msa0671410:CDS 40.0%
! ACTTGTACTTTTGACCTCCA+TGG - chr4_4:14661995-14662014 None:intergenic 40.0%
! TGGAGGTCAAAAGTACAAGT+AGG + chr4_4:14661995-14662014 Msa0671410:intron 40.0%
!! ACCTTCAACAAAAGCATTGC+CGG - chr4_4:14662102-14662121 None:intergenic 40.0%
! AGTGCTAGTTACTTTCTAGC+TGG + chr4_4:14662131-14662150 Msa0671410:CDS 40.0%
ATGGAACATTGTAGGGACTT+AGG + chr4_4:14662502-14662521 Msa0671410:intron 40.0%
CAGCTAAATTACTTGCAAGC+TGG - chr4_4:14662804-14662823 None:intergenic 40.0%
AGATGGGAGCTAAAGTTACA+TGG + chr4_4:14663059-14663078 Msa0671410:CDS 40.0%
CATACCATCTCTAATAGCAG+TGG - chr4_4:14663224-14663243 None:intergenic 40.0%
CACTGCTATTAGAGATGGTA+TGG + chr4_4:14663222-14663241 Msa0671410:intron 40.0%
CCATGTGCGATTGTATTATG+GGG - chr4_4:14663604-14663623 None:intergenic 40.0%
!! GTGGAGTGTGATTTAACTTG+AGG + chr4_4:14663691-14663710 Msa0671410:intron 40.0%
!! GTGATTTAACTTGAGGAGCT+TGG + chr4_4:14663698-14663717 Msa0671410:intron 40.0%
TCTCATGTAAGCAAAACTGG+AGG + chr4_4:14663972-14663991 Msa0671410:intron 40.0%
TATTGGACACCAACACTTGT+AGG + chr4_4:14664115-14664134 Msa0671410:intron 40.0%
! GCACTGGCACTTAAAATTGA+AGG - chr4_4:14664153-14664172 None:intergenic 40.0%
! TCTATTTTCCAGTGGCAAGT+TGG + chr4_4:14664275-14664294 Msa0671410:intron 40.0%
AATCTGCACAGAACTCAGAA+AGG + chr4_4:14664327-14664346 Msa0671410:CDS 40.0%
TTAACTTAACCCACTTGGGT+TGG + chr4_4:14664416-14664435 Msa0671410:intron 40.0%
! GGTGTTATCACACAGTAATC+AGG - chr4_4:14664627-14664646 None:intergenic 40.0%
GTGACATTCAATTTCTCAGG+TGG - chr4_4:14664648-14664667 None:intergenic 40.0%
TGATGATCATAGAATGGCCA+TGG + chr4_4:14664683-14664702 Msa0671410:CDS 40.0%
!! AATGTTTTTCTGGTGCAACC+GGG - chr4_4:14664756-14664775 None:intergenic 40.0%
!! GAATGTTTTTCTGGTGCAAC+CGG - chr4_4:14664757-14664776 None:intergenic 40.0%
TAAGTAGGCAAGAGAGAGAA+AGG + chr4_4:14664833-14664852 Msa0671410:intron 40.0%
AAGTAGGCAAGAGAGAGAAA+GGG + chr4_4:14664834-14664853 Msa0671410:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr4_4:14664908-14664927 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG - chr4_4:14664934-14664953 None:intergenic 40.0%
! CTTACCCTGTTTTACACAAG+AGG + chr4_4:14664932-14664951 Msa0671410:intron 40.0%
ACAGCCTCTTGTGTAAAACA+GGG - chr4_4:14664939-14664958 None:intergenic 40.0%
AACAGCCTCTTGTGTAAAAC+AGG - chr4_4:14664940-14664959 None:intergenic 40.0%
GGAGTTCATAGCATCTTAAG+AGG + chr4_4:14665442-14665461 Msa0671410:intron 40.0%
GTTCATAGCATCTTAAGAGG+AGG + chr4_4:14665445-14665464 Msa0671410:intron 40.0%
TGAACATAGGTGATCTTACC+AGG - chr4_4:14665707-14665726 None:intergenic 40.0%
ATGTCATCCTTGGTATAGGT+TGG + chr4_4:14665920-14665939 Msa0671410:CDS 40.0%
TGTGTATCCAACCTATACCA+AGG - chr4_4:14665930-14665949 None:intergenic 40.0%
AACAACCTTCTCCAAAGAGA+AGG - chr4_4:14666262-14666281 None:intergenic 40.0%
GCTTCAAAATCACGCAACAA+TGG - chr4_4:14666349-14666368 None:intergenic 40.0%
TTGGTGTAAGGTGTGGTTGT+TGG - chr4_4:14658108-14658127 None:intergenic 45.0%
!! TGTATACCTCTTTTGGGGGT+TGG - chr4_4:14658127-14658146 None:intergenic 45.0%
GAAATTGTGATGTGGGTAGG+AGG + chr4_4:14658388-14658407 Msa0671410:CDS 45.0%
TTGGACAAAGACTTAGACCC+AGG - chr4_4:14658510-14658529 None:intergenic 45.0%
TCCGGCTAAAAGTGAGATGA+AGG + chr4_4:14658791-14658810 Msa0671410:intron 45.0%
! CATCTGAAGTCATGATAGGG+TGG - chr4_4:14659658-14659677 None:intergenic 45.0%
! CTTGAGGCATTAAAGACCCT+TGG + chr4_4:14660199-14660218 Msa0671410:CDS 45.0%
ATCTTCCACACGAAGTCCAA+GGG - chr4_4:14660218-14660237 None:intergenic 45.0%
ACCAAACAAGCTGTTGTGGA+AGG + chr4_4:14660247-14660266 Msa0671410:CDS 45.0%
TACTGCAATGCGTCCTTTGA+CGG + chr4_4:14660330-14660349 Msa0671410:CDS 45.0%
TTGCTGCAGGTGGAAATACA+AGG + chr4_4:14660362-14660381 Msa0671410:CDS 45.0%
CCAACACTGCTTCAAAACCA+TGG - chr4_4:14660416-14660435 None:intergenic 45.0%
!!! CCATGGTTTTGAAGCAGTGT+TGG + chr4_4:14660413-14660432 Msa0671410:intron 45.0%
TCATCACTCCGATGATCCTT+TGG - chr4_4:14660788-14660807 None:intergenic 45.0%
! ATTGGTCTCTCTCTCATTCG+GGG - chr4_4:14660931-14660950 None:intergenic 45.0%
CGAATGAGAGAGAGACCAAT+TGG + chr4_4:14660931-14660950 Msa0671410:CDS 45.0%
!! GTGTCTGGTCTTAAGCAACT+TGG + chr4_4:14660961-14660980 Msa0671410:CDS 45.0%
CCCTTCCCAATTATACGAAC+AGG - chr4_4:14661024-14661043 None:intergenic 45.0%
GTTCGTATAATTGGGAAGGG+AGG + chr4_4:14661024-14661043 Msa0671410:CDS 45.0%
GCACGGATAAATTATCGACG+CGG - chr4_4:14661095-14661114 None:intergenic 45.0%
TTCGCTTTCCTATACCCACA+TGG + chr4_4:14661183-14661202 Msa0671410:intron 45.0%
AAATGTGGCCATGTGGGTAT+AGG - chr4_4:14661194-14661213 None:intergenic 45.0%
ACAGTGAAATGTGGCCATGT+GGG - chr4_4:14661200-14661219 None:intergenic 45.0%
TACAGTGAAATGTGGCCATG+TGG - chr4_4:14661201-14661220 None:intergenic 45.0%
ATGAACTTCGCTATTGGGAC+TGG + chr4_4:14661289-14661308 Msa0671410:intron 45.0%
TGAACTTCGCTATTGGGACT+GGG + chr4_4:14661290-14661309 Msa0671410:intron 45.0%
! ATTCTAAAGATGTGGAGGGG+AGG - chr4_4:14661339-14661358 None:intergenic 45.0%
CAATCCAAACAGGCCCTATT+TGG + chr4_4:14661569-14661588 Msa0671410:intron 45.0%
TATTATCCCATCTCGCATGC+AGG + chr4_4:14661776-14661795 Msa0671410:intron 45.0%
!! TTGAAGTTGATGGAGCGCTT+TGG + chr4_4:14661927-14661946 Msa0671410:CDS 45.0%
AACACAGTGCTAATTGGGAC+AGG + chr4_4:14661961-14661980 Msa0671410:CDS 45.0%
TGCTAATTGGGACAGGTTCT+TGG + chr4_4:14661968-14661987 Msa0671410:CDS 45.0%
AGTAGGTTTCTACGGTTTCG+AGG + chr4_4:14662012-14662031 Msa0671410:intron 45.0%
! GTTTTTCGTATCAGGTCTCC+CGG + chr4_4:14662080-14662099 Msa0671410:intron 45.0%
!! CCTTCAACAAAAGCATTGCC+GGG - chr4_4:14662101-14662120 None:intergenic 45.0%
AGTTACTGGCGGAACTATCA+CGG + chr4_4:14662160-14662179 Msa0671410:CDS 45.0%
ACTATCACGGTTATAGGCTG+TGG + chr4_4:14662173-14662192 Msa0671410:CDS 45.0%
CTATCACGGTTATAGGCTGT+GGG + chr4_4:14662174-14662193 Msa0671410:CDS 45.0%
TGCAACAACAGCAAGTGTCA+TGG - chr4_4:14663185-14663204 None:intergenic 45.0%
GTCAAGCAAAGCAAGGTTAG+TGG - chr4_4:14663542-14663561 None:intergenic 45.0%
CCCCATAATACAATCGCACA+TGG + chr4_4:14663601-14663620 Msa0671410:intron 45.0%
GATTTAAACTCCGTCCCTTG+AGG + chr4_4:14663856-14663875 Msa0671410:intron 45.0%
GACTTTCTAACCTCAAGGGA+CGG - chr4_4:14663869-14663888 None:intergenic 45.0%
GTGTGATGTCCTACAAGTGT+TGG - chr4_4:14664127-14664146 None:intergenic 45.0%
TTAACTCTCCAACTTGCCAC+TGG - chr4_4:14664286-14664305 None:intergenic 45.0%
GAATCGAACCTAAGACCTTG+AGG - chr4_4:14664480-14664499 None:intergenic 45.0%
! ATTCTCCCCGGTGTCAATTT+GGG + chr4_4:14664496-14664515 Msa0671410:intron 45.0%
CTAGGAGCAACTGTTGAAGA+AGG + chr4_4:14664600-14664619 Msa0671410:CDS 45.0%
AGCAGCAAGAGAAAATGCCA+TGG - chr4_4:14664703-14664722 None:intergenic 45.0%
!! GCATTTTCTCTTGCTGCTTG+TGG + chr4_4:14664705-14664724 Msa0671410:CDS 45.0%
CCAGTTACCATCAAAGATCC+CGG + chr4_4:14664735-14664754 Msa0671410:CDS 45.0%
GCGTACAATACACCAAATGG+TGG - chr4_4:14664909-14664928 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr4_4:14664912-14664931 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr4_4:14664943-14664962 Msa0671410:intron 45.0%
! TCTCTCTCTCTGAAAGGTCA+CGG - chr4_4:14664977-14664996 None:intergenic 45.0%
GTTATGGGTGTTTGTGAGCT+TGG - chr4_4:14665657-14665676 None:intergenic 45.0%
AACACCCATAACCGTCACAT+CGG + chr4_4:14665665-14665684 Msa0671410:CDS 45.0%
TACGCCCATCTTCTTAAGAG+TGG - chr4_4:14665803-14665822 None:intergenic 45.0%
GCTTCTGTTGAGACAGTTAG+AGG + chr4_4:14666074-14666093 Msa0671410:intron 45.0%
GGTATCAGAAGCCTTCTCTT+TGG + chr4_4:14666248-14666267 Msa0671410:intron 45.0%
! AGAAGCCTTCTCTTTGGAGA+AGG + chr4_4:14666254-14666273 Msa0671410:intron 45.0%
! TCAGAAGCACGCAACAATGA+CGG - chr4_4:14666304-14666323 None:intergenic 45.0%
!!! CTCTTTTGGGGGTTGGTGTA+AGG - chr4_4:14658120-14658139 None:intergenic 50.0%
CTTACACCAACCCCCAAAAG+AGG + chr4_4:14658118-14658137 Msa0671410:five_prime_UTR 50.0%
TTCTGCTTCTGTTGCTGCTG+CGG + chr4_4:14658431-14658450 Msa0671410:CDS 50.0%
TACGCGTGTGTTTGGTTGTG+CGG + chr4_4:14659084-14659103 Msa0671410:intron 50.0%
CAGGAAATCCTAGCTTCTGC+GGG - chr4_4:14659382-14659401 None:intergenic 50.0%
GCAGGAAATCCTAGCTTCTG+CGG - chr4_4:14659383-14659402 None:intergenic 50.0%
GACTAGGTAGCCTAAAGGCT+AGG + chr4_4:14659534-14659553 Msa0671410:intron 50.0%
GTAGCCTAAAGGCTAGGTGT+TGG + chr4_4:14659540-14659559 Msa0671410:intron 50.0%
AATGCTCGCACACACGTTTC+TGG - chr4_4:14659842-14659861 None:intergenic 50.0%
AAAGACCCTTGGACTTCGTG+TGG + chr4_4:14660210-14660229 Msa0671410:CDS 50.0%
CATCTTCCACACGAAGTCCA+AGG - chr4_4:14660219-14660238 None:intergenic 50.0%
! GCCTTCCACAACAGCTTGTT+TGG - chr4_4:14660251-14660270 None:intergenic 50.0%
!! TTGCAGTACCGGCATTTCCA+AGG - chr4_4:14660318-14660337 None:intergenic 50.0%
CAAAGGACGCATTGCAGTAC+CGG - chr4_4:14660329-14660348 None:intergenic 50.0%
ATTTCCACCTGCAGCAACCA+AGG - chr4_4:14660359-14660378 None:intergenic 50.0%
!! GTTGTAGAGGCGCTATCACA+TGG + chr4_4:14660445-14660464 Msa0671410:intron 50.0%
!! TAGAGGCGCTATCACATGGT+GGG + chr4_4:14660449-14660468 Msa0671410:intron 50.0%
GTTTCACCTGCATGCGAGAT+GGG - chr4_4:14661785-14661804 None:intergenic 50.0%
AGTTTCACCTGCATGCGAGA+TGG - chr4_4:14661786-14661805 None:intergenic 50.0%
TTTGCTTATGGCAGCTCCGT+TGG + chr4_4:14661839-14661858 Msa0671410:CDS 50.0%
TCAACATCACCAAGGGCCAA+CGG - chr4_4:14661858-14661877 None:intergenic 50.0%
! CCCGGCAATGCTTTTGTTGA+AGG + chr4_4:14662098-14662117 Msa0671410:CDS 50.0%
GGCGGAACTATCACGGTTAT+AGG + chr4_4:14662167-14662186 Msa0671410:CDS 50.0%
CTGTGGGACAAGCAGTTTAC+AGG + chr4_4:14662190-14662209 Msa0671410:CDS 50.0%
GCAAGTGTCATGGCAACATC+TGG - chr4_4:14663175-14663194 None:intergenic 50.0%
GGTCCCACTGCTATTAGAGA+TGG + chr4_4:14663217-14663236 Msa0671410:CDS 50.0%
TCGAACCTAAGACCTTGAGG+AGG - chr4_4:14664477-14664496 None:intergenic 50.0%
GTCTTAGGTTCGATTCTCCC+CGG + chr4_4:14664484-14664503 Msa0671410:intron 50.0%
! GATTCTCCCCGGTGTCAATT+TGG + chr4_4:14664495-14664514 Msa0671410:intron 50.0%
TAGCCCACCCAAATTGACAC+CGG - chr4_4:14664506-14664525 None:intergenic 50.0%
! CCGGGATCTTTGATGGTAAC+TGG - chr4_4:14664738-14664757 None:intergenic 50.0%
AAGAGAGAGAAAGGGCAACC+CGG + chr4_4:14664842-14664861 Msa0671410:intron 50.0%
! CTCTCTCTCTGAAAGGTCAC+GGG - chr4_4:14664976-14664995 None:intergenic 50.0%
GGGTGTTTGTGAGCTTGGAA+CGG - chr4_4:14665652-14665671 None:intergenic 50.0%
ACGTCCGATGTGACGGTTAT+GGG - chr4_4:14665672-14665691 None:intergenic 50.0%
AAGAACGACGTCCGATGTGA+CGG - chr4_4:14665679-14665698 None:intergenic 50.0%
GAAGCTACAGCTGGCAGTTA+GGG - chr4_4:14666059-14666078 None:intergenic 50.0%
AGAAGCTACAGCTGGCAGTT+AGG - chr4_4:14666060-14666079 None:intergenic 50.0%
GTCTCAACAGAAGCTACAGC+TGG - chr4_4:14666068-14666087 None:intergenic 50.0%
!! TTGGGGGTTGGTGTAAGGTG+TGG - chr4_4:14658115-14658134 None:intergenic 55.0%
GCTTCTTGCTGCTCTCTCTG+AGG + chr4_4:14658539-14658558 Msa0671410:CDS 55.0%
CGTGTGTTTGGTTGTGCGGT+GGG + chr4_4:14659088-14659107 Msa0671410:intron 55.0%
GTGTGTTTGGTTGTGCGGTG+GGG + chr4_4:14659089-14659108 Msa0671410:intron 55.0%
CTTGCTTACCCGCAGAAGCT+AGG + chr4_4:14659371-14659390 Msa0671410:intron 55.0%
CAAGCTGTTGTGGAAGGCAG+TGG + chr4_4:14660253-14660272 Msa0671410:CDS 55.0%
CTGTTGTGGAAGGCAGTGGT+GGG + chr4_4:14660257-14660276 Msa0671410:CDS 55.0%
!! GTAGAGGCGCTATCACATGG+TGG + chr4_4:14660448-14660467 Msa0671410:intron 55.0%
CGCATGCAGGTGAAACTGTC+TGG + chr4_4:14661789-14661808 Msa0671410:intron 55.0%
TGGGACAGGTTCTTGGTCCA+TGG + chr4_4:14661975-14661994 Msa0671410:CDS 55.0%
GACAGGTTCTTGGTCCATGG+AGG + chr4_4:14661978-14661997 Msa0671410:CDS 55.0%
CTAGCTGGTGCAGCAGTTAC+TGG + chr4_4:14662146-14662165 Msa0671410:CDS 55.0%
TAACTGTTACCGGGCCTCCA+CGG + chr4_4:14663095-14663114 Msa0671410:CDS 55.0%
TCCGGTCGGAAAGTCTTGCA+AGG + chr4_4:14663124-14663143 Msa0671410:CDS 55.0%
GCCTTGCAAGACTTTCCGAC+CGG - chr4_4:14663128-14663147 None:intergenic 55.0%
!! TTAACCCACTTGGGTTGGCC+CGG + chr4_4:14664421-14664440 Msa0671410:intron 55.0%
AGGTCTCAAGCCAACACCAC+CGG - chr4_4:14664443-14664462 None:intergenic 55.0%
!! GTGGTGTTGGCTTGAGACCT+TGG + chr4_4:14664443-14664462 Msa0671410:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - chr4_4:14664463-14664482 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr4_4:14664462-14664481 Msa0671410:intron 55.0%
GTGCTCCTCCTCAAGGTCTT+AGG + chr4_4:14664469-14664488 Msa0671410:intron 55.0%
! TCCCCGGTGTCAATTTGGGT+GGG + chr4_4:14664500-14664519 Msa0671410:intron 55.0%
AGCCCACCCAAATTGACACC+GGG - chr4_4:14664505-14664524 None:intergenic 55.0%
GGTGCAACCGGGATCTTTGA+TGG - chr4_4:14664745-14664764 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr4_4:14664868-14664887 Msa0671410:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr4_4:14664869-14664888 Msa0671410:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr4_4:14664964-14664983 None:intergenic 55.0%
GACGTCCGATGTGACGGTTA+TGG - chr4_4:14665673-14665692 None:intergenic 55.0%
GGACGTCGTTCTTCTGATCC+TGG + chr4_4:14665686-14665705 Msa0671410:CDS 55.0%
GGCGTAGCGTCTAACTCACT+GGG + chr4_4:14665817-14665836 Msa0671410:CDS 55.0%
GCGTGTGTTTGGTTGTGCGG+TGG + chr4_4:14659087-14659106 Msa0671410:intron 60.0%
GCTGTTGTGGAAGGCAGTGG+TGG + chr4_4:14660256-14660275 Msa0671410:CDS 60.0%
GCAACCAAGGCTGCCGTCAA+AGG - chr4_4:14660346-14660365 None:intergenic 60.0%
ATTGGGAAGGGAGGGCTTCC+AGG + chr4_4:14661033-14661052 Msa0671410:CDS 60.0%
TTGGGAAGGGAGGGCTTCCA+GGG + chr4_4:14661034-14661053 Msa0671410:CDS 60.0%
GGCTTCCAGGGGGAAAGGTA+AGG + chr4_4:14661046-14661065 Msa0671410:intron 60.0%
! GGTAGCCTTACCTTTCCCCC+TGG - chr4_4:14661054-14661073 None:intergenic 60.0%
GCTGGTGCAGCAGTTACTGG+CGG + chr4_4:14662149-14662168 Msa0671410:CDS 60.0%
AACTGTTACCGGGCCTCCAC+GGG + chr4_4:14663096-14663115 Msa0671410:CDS 60.0%
CTCCACGGGATTCTTCCGGT+CGG + chr4_4:14663110-14663129 Msa0671410:CDS 60.0%
TTCCGACCGGAAGAATCCCG+TGG - chr4_4:14663115-14663134 None:intergenic 60.0%
GGTCTCAAGCCAACACCACC+GGG - chr4_4:14664442-14664461 None:intergenic 60.0%
! CTCCCCGGTGTCAATTTGGG+TGG + chr4_4:14664499-14664518 Msa0671410:intron 60.0%
GCCCACCCAAATTGACACCG+GGG - chr4_4:14664504-14664523 None:intergenic 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr4_4:14664864-14664883 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr4_4:14664880-14664899 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr4_4:14664881-14664900 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr4_4:14664880-14664899 Msa0671410:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr4_4:14664881-14664900 Msa0671410:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr4_4:14664896-14664915 None:intergenic 60.0%
GGGCGTAGCGTCTAACTCAC+TGG + chr4_4:14665816-14665835 Msa0671410:CDS 60.0%
TTCTGTTGCTGCTGCGGCGC+CGG + chr4_4:14658437-14658456 Msa0671410:CDS 65.0%
! TGCGGCGCCGGAGATTGTGT+TGG + chr4_4:14658449-14658468 Msa0671410:CDS 65.0%
GCGTCCTTTGACGGCAGCCT+TGG + chr4_4:14660339-14660358 Msa0671410:CDS 65.0%
ACGGCAGCCTTGGTTGCTGC+AGG + chr4_4:14660349-14660368 Msa0671410:CDS 65.0%
GCAGCCTTGGTTGCTGCAGG+TGG + chr4_4:14660352-14660371 Msa0671410:CDS 65.0%
TGGGAAGGGAGGGCTTCCAG+GGG + chr4_4:14661035-14661054 Msa0671410:CDS 65.0%
ATGGCAGCTCCGTTGGCCCT+TGG + chr4_4:14661846-14661865 Msa0671410:CDS 65.0%
GGAAGAATCCCGTGGAGGCC+CGG - chr4_4:14663107-14663126 None:intergenic 65.0%
GGGCCTCCACGGGATTCTTC+CGG + chr4_4:14663106-14663125 Msa0671410:CDS 65.0%
CGACCGGAAGAATCCCGTGG+AGG - chr4_4:14663112-14663131 None:intergenic 65.0%
ACCACCGGGCCAACCCAAGT+GGG - chr4_4:14664428-14664447 None:intergenic 65.0%
!! TTGGGTTGGCCCGGTGGTGT+TGG + chr4_4:14664430-14664449 Msa0671410:intron 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr4_4:14664863-14664882 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr4_4:14664874-14664893 Msa0671410:intron 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr4_4:14664875-14664894 Msa0671410:intron 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr4_4:14664879-14664898 Msa0671410:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr4_4:14664894-14664913 Msa0671410:intron 65.0%
GGGAAGGGAGGGCTTCCAGG+GGG + chr4_4:14661036-14661055 Msa0671410:CDS 70.0%
GGGAGGGCTTCCAGGGGGAA+AGG + chr4_4:14661041-14661060 Msa0671410:CDS 70.0%
!! ACCCACTTGGGTTGGCCCGG+TGG + chr4_4:14664424-14664443 Msa0671410:intron 70.0%
CACCACCGGGCCAACCCAAG+TGG - chr4_4:14664429-14664448 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 14657932 14666411 14657932 ID=Msa0671410;Name=Msa0671410
chr4_4 mRNA 14657932 14666411 14657932 ID=Msa0671410-mRNA-1;Parent=Msa0671410;Name=Msa0671410-mRNA-1;_AED=0.18;_eAED=0.18;_QI=290|0.7|0.63|0.72|1|1|11|0|640
chr4_4 exon 14657932 14658560 14657932 ID=Msa0671410-mRNA-1:exon:4488;Parent=Msa0671410-mRNA-1
chr4_4 exon 14660148 14660383 14660148 ID=Msa0671410-mRNA-1:exon:4489;Parent=Msa0671410-mRNA-1
chr4_4 exon 14660909 14661062 14660909 ID=Msa0671410-mRNA-1:exon:4490;Parent=Msa0671410-mRNA-1
chr4_4 exon 14661798 14662012 14661798 ID=Msa0671410-mRNA-1:exon:4491;Parent=Msa0671410-mRNA-1
chr4_4 exon 14662094 14662211 14662094 ID=Msa0671410-mRNA-1:exon:4492;Parent=Msa0671410-mRNA-1
chr4_4 exon 14663028 14663238 14663028 ID=Msa0671410-mRNA-1:exon:4493;Parent=Msa0671410-mRNA-1
chr4_4 exon 14664287 14664348 14664287 ID=Msa0671410-mRNA-1:exon:4494;Parent=Msa0671410-mRNA-1
chr4_4 exon 14664600 14664791 14664600 ID=Msa0671410-mRNA-1:exon:4495;Parent=Msa0671410-mRNA-1
chr4_4 exon 14665645 14665707 14665645 ID=Msa0671410-mRNA-1:exon:4496;Parent=Msa0671410-mRNA-1
chr4_4 exon 14665796 14665972 14665796 ID=Msa0671410-mRNA-1:exon:4497;Parent=Msa0671410-mRNA-1
chr4_4 exon 14666256 14666411 14666256 ID=Msa0671410-mRNA-1:exon:4498;Parent=Msa0671410-mRNA-1
chr4_4 five_prime_UTR 14657932 14658221 14657932 ID=Msa0671410-mRNA-1:five_prime_utr;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14658222 14658560 14658222 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14660148 14660383 14660148 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14660909 14661062 14660909 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14661798 14662012 14661798 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14662094 14662211 14662094 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14663028 14663238 14663028 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14664287 14664348 14664287 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14664600 14664791 14664600 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14665645 14665707 14665645 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14665796 14665972 14665796 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
chr4_4 CDS 14666256 14666411 14666256 ID=Msa0671410-mRNA-1:cds;Parent=Msa0671410-mRNA-1
Gene Sequence

>Msa0671410

ATGGCCCAGTTAAGCAAAATCAACAATCTAGTTCAAACAGCTCAAAATTTTCACAATTCAACAAATTCCAACAAACCCAATTCAGCAAAATCAGTTTCATTGAGGTCAAGCATTTGGGGTTCTTCAAAATCATGGAGTTTGAAGCATAAAAATGGAGTCTTTATTGGAAATTGTGATGTGGGTAGGAGGAATTCTGTTGTGTTGAAGGCTTCTGCTTCTGTTGCTGCTGCGGCGCCGGAGATTGTGTTGGAACCTATTAGGGAGATTTCTGGAAGTATTACATTGCCTGGGTCTAAGTCTTTGTCCAATCGGATTTTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTTGTAGAGAACTTGTTAGATAGTGAGGATATTCATTACATGCTTGAGGCATTAAAGACCCTTGGACTTCGTGTGGAAGATGACAAAACAACCAAACAAGCTGTTGTGGAAGGCAGTGGTGGGTTATTTCCTGAATCTAAAGATGAAGTTAATTTATTCCTTGGAAATGCCGGTACTGCAATGCGTCCTTTGACGGCAGCCTTGGTTGCTGCAGGTGGAAATACAAGATACATACTTGACGGGGTGCCCCGAATGAGAGAGAGACCAATTGGAGATTTAGTGTCTGGTCTTAAGCAACTTGGTGCAGATGTTGATTGTTTTCTTGGCACAAACTGTCCACCTGTTCGTATAATTGGGAAGGGAGGGCTTCCAGGGGGAAAGGTGAAACTGTCTGGATCTATTAGTAGTCAGTACTTGACTGCTTTGCTTATGGCAGCTCCGTTGGCCCTTGGTGATGTTGAGATTGAGATTGTTGATAAACTGATTTCTGTTCCGTATGTCGAAATGACTTTGAAGTTGATGGAGCGCTTTGGAGTCTTCGTAGAACACAGTGCTAATTGGGACAGGTTCTTGGTCCATGGAGGTCAAAAGTACAAGTCTCCCGGCAATGCTTTTGTTGAAGGTGATGCTTCAAGTGCTAGTTACTTTCTAGCTGGTGCAGCAGTTACTGGCGGAACTATCACGGTTATAGGCTGTGGGACAAGCAGTTTACAGGGAGATGTAAAATTTGCTGAAGTTCTTGAAAAGATGGGAGCTAAAGTTACATGGACAGAAAACAGTGTAACTGTTACCGGGCCTCCACGGGATTCTTCCGGTCGGAAAGTCTTGCAAGGCATTGATGTCAATATGAACAAGATGCCAGATGTTGCCATGACACTTGCTGTTGTTGCACTATATGCTAATGGTCCCACTGCTATTAGAGATGTGGCAAGTTGGAGAGTTAAAGAAACTGAAAGAATGATAGCAATCTGCACAGAACTCAGAAAGCTAGGAGCAACTGTTGAAGAAGGTCCTGATTACTGTGTGATAACACCACCTGAGAAATTGAATGTCACATCAATAGATACATATGATGATCATAGAATGGCCATGGCATTTTCTCTTGCTGCTTGTGGTGATGTTCCAGTTACCATCAAAGATCCCGGTTGCACCAGAAAAACATTCCCTGATTACTTTCAAACTGCCGTTCCAAGCTCACAAACACCCATAACCGTCACATCGGACGTCGTTCTTCTGATCCTGTTTACCACTCTTAAGAAGATGGGCGTAGCGTCTAACTCACTGGGAATTTTATTAGTCGATGTAGTGGTGGGTCCAAAGAAAGTAAGATCTTCTTTCTTTGTCACAGACAGCAAGCATTCATATTATGTCATCCTTGGTATAGGTTGGATACACACAAATGAGTATGTTCTTAAGAAGAAGCCTTCTCTTTGGAGAAGGTTGTTACGATTCAGTTACGCATTTCCGTCATTGTTGCGTGCTTCTGAAGCTTTCAGTTACGCAATTTCGCCATTGTTGCGTGATTTTGAAGCTTCGTCTTCTTCATTTCTTTTCTCCTTGTTGAAGATTCTTTGA

Protein sequence

>Msa0671410

MAQLSKINNLVQTAQNFHNSTNSNKPNSAKSVSLRSSIWGSSKSWSLKHKNGVFIGNCDVGRRNSVVLKASASVAAAAPEIVLEPIREISGSITLPGSKSLSNRILLLAALSEGTTVVENLLDSEDIHYMLEALKTLGLRVEDDKTTKQAVVEGSGGLFPESKDEVNLFLGNAGTAMRPLTAALVAAGGNTRYILDGVPRMRERPIGDLVSGLKQLGADVDCFLGTNCPPVRIIGKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVFVEHSANWDRFLVHGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVIGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVALYANGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTSIDTYDDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYFQTAVPSSQTPITVTSDVVLLILFTTLKKMGVASNSLGILLVDVVVGPKKVRSSFFVTDSKHSYYVILGIGWIHTNEYVLKKKPSLWRRLLRFSYAFPSLLRASEAFSYAISPLLRDFEASSSSFLFSLLKIL*