Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624940 | XP_003605139.1 | 97.510 | 522 | 10 | 1 | 1 | 519 | 1 | 522 | 0.0 | 1040 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624940 | sp|P11043|AROA_PETHY | 77.186 | 526 | 100 | 5 | 4 | 519 | 1 | 516 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0624940 | 0.810593 | 1.067245e-50 | -8.615850e-47 |
| Msa0012940 | Msa0624940 | 0.809196 | 2.132309e-50 | -8.615850e-47 |
| Msa0035120 | Msa0624940 | 0.847844 | 8.941423e-60 | -8.615850e-47 |
| Msa0052870 | Msa0624940 | 0.806087 | 9.754013e-50 | -8.615850e-47 |
| Msa0064110 | Msa0624940 | 0.803052 | 4.189323e-49 | -8.615850e-47 |
| Msa0089980 | Msa0624940 | 0.805993 | 1.020575e-49 | -8.615850e-47 |
| Msa0090010 | Msa0624940 | 0.801215 | 1.000271e-48 | -8.615850e-47 |
| Msa0106620 | Msa0624940 | 0.855804 | 4.935079e-62 | -8.615850e-47 |
| Msa0106710 | Msa0624940 | 0.842235 | 2.926108e-58 | -8.615850e-47 |
| Msa0116790 | Msa0624940 | 0.809634 | 1.717098e-50 | -8.615850e-47 |
| Msa0615030 | Msa0624940 | 0.815672 | 8.198753e-52 | -8.615850e-47 |
| Msa0624940 | Msa0626270 | 0.838291 | 3.138370e-57 | -8.615850e-47 |
| Msa0624940 | Msa0626460 | 0.854747 | 1.001845e-61 | -8.615850e-47 |
| Msa0624940 | Msa0663270 | 0.831070 | 2.056427e-55 | -8.615850e-47 |
| Msa0624940 | Msa0664090 | 0.802181 | 6.337687e-49 | -8.615850e-47 |
| Msa0624940 | Msa0664540 | 0.876246 | 1.626673e-68 | -8.615850e-47 |
| Msa0624940 | Msa0669180 | 0.802104 | 6.572270e-49 | -8.615850e-47 |
| Msa0624940 | Msa0671410 | 0.896983 | 2.183968e-76 | -8.615850e-47 |
| Msa0624940 | Msa0689760 | 0.816549 | 5.223034e-52 | -8.615850e-47 |
| Msa0624940 | Msa0698100 | 0.807337 | 5.309876e-50 | -8.615850e-47 |
| Msa0624940 | Msa0698290 | 0.808850 | 2.529318e-50 | -8.615850e-47 |
| Msa0624940 | Msa0716860 | 0.824449 | 8.022130e-54 | -8.615850e-47 |
| Msa0624940 | Msa0757800 | 0.820582 | 6.357924e-53 | -8.615850e-47 |
| Msa0624940 | Msa0837410 | 0.801175 | 1.019443e-48 | -8.615850e-47 |
| Msa0624940 | Msa0903710 | 0.804832 | 1.787336e-49 | -8.615850e-47 |
| Msa0624940 | Msa1006810 | 0.813009 | 3.178894e-51 | -8.615850e-47 |
| Msa0624940 | Msa1095790 | 0.814228 | 1.714736e-51 | -8.615850e-47 |
| Msa0624940 | Msa1119990 | 0.800785 | 1.224516e-48 | -8.615850e-47 |
| Msa0624940 | Msa1201640 | 0.812233 | 4.700738e-51 | -8.615850e-47 |
| Msa0624940 | Msa1204100 | -0.808128 | 3.606004e-50 | -8.615850e-47 |
| Msa0624940 | Msa1211340 | 0.802773 | 4.785343e-49 | -8.615850e-47 |
| Msa0624940 | Msa1226270 | 0.812955 | 3.266750e-51 | -8.615850e-47 |
| Msa0624940 | Msa1254620 | 0.810628 | 1.048679e-50 | -8.615850e-47 |
| Msa0624940 | Msa1259640 | 0.801171 | 1.021259e-48 | -8.615850e-47 |
| Msa0624940 | Msa1271130 | 0.813770 | 2.162869e-51 | -8.615850e-47 |
| Msa0624940 | Msa1290680 | 0.818037 | 2.415617e-52 | -8.615850e-47 |
| Msa0624940 | Msa1323690 | 0.818877 | 1.557971e-52 | -8.615850e-47 |
| Msa0624940 | Msa1329050 | -0.803322 | 3.684414e-49 | -8.615850e-47 |
| Msa0624940 | Msa1329790 | 0.806272 | 8.917726e-50 | -8.615850e-47 |
| Msa0624940 | Msa1341840 | 0.804398 | 2.202536e-49 | -8.615850e-47 |
| Msa0624940 | Msa1346660 | 0.833025 | 6.758426e-56 | -8.615850e-47 |
| Msa0624940 | Msa1393820 | 0.801589 | 8.384894e-49 | -8.615850e-47 |
| Msa0624940 | Msa1401270 | 0.800984 | 1.114927e-48 | -8.615850e-47 |
| Msa0624940 | Msa1411000 | 0.801263 | 9.779653e-49 | -8.615850e-47 |
| Msa0624940 | Msa1418240 | 0.804843 | 1.777840e-49 | -8.615850e-47 |
| Msa0624940 | Msa1420250 | 0.813187 | 2.905616e-51 | -8.615850e-47 |
| Msa0624940 | Msa1453360 | 0.800773 | 1.231567e-48 | -8.615850e-47 |
| Msa0624940 | Msa1461540 | 0.815473 | 9.078201e-52 | -8.615850e-47 |
| Msa0624940 | Msa1462660 | 0.814337 | 1.622178e-51 | -8.615850e-47 |
| Msa0624940 | Msa1467000 | 0.800535 | 1.377241e-48 | -8.615850e-47 |
| Msa0130110 | Msa0624940 | 0.801294 | 9.635594e-49 | -8.615850e-47 |
| Msa0130720 | Msa0624940 | 0.810265 | 1.256251e-50 | -8.615850e-47 |
| Msa0191890 | Msa0624940 | 0.803400 | 3.549711e-49 | -8.615850e-47 |
| Msa0207350 | Msa0624940 | 0.810498 | 1.118834e-50 | -8.615850e-47 |
| Msa0220730 | Msa0624940 | 0.854583 | 1.117454e-61 | -8.615850e-47 |
| Msa0389410 | Msa0624940 | 0.824195 | 9.206621e-54 | -8.615850e-47 |
| Msa0432160 | Msa0624940 | 0.809726 | 1.640718e-50 | -8.615850e-47 |
| Msa0450400 | Msa0624940 | -0.833327 | 5.683089e-56 | -8.615850e-47 |
| Msa0467100 | Msa0624940 | 0.813280 | 2.773176e-51 | -8.615850e-47 |
| Msa0468250 | Msa0624940 | 0.813856 | 2.070917e-51 | -8.615850e-47 |
| Msa0468410 | Msa0624940 | 0.805764 | 1.140352e-49 | -8.615850e-47 |
| Msa0476680 | Msa0624940 | 0.811456 | 6.939854e-51 | -8.615850e-47 |
| Msa0241830 | Msa0624940 | 0.823152 | 1.615327e-53 | -8.615850e-47 |
| Msa0279850 | Msa0624940 | 0.839502 | 1.524690e-57 | -8.615850e-47 |
| Msa0288080 | Msa0624940 | 0.801720 | 7.881864e-49 | -8.615850e-47 |
| Msa0304100 | Msa0624940 | 0.802989 | 4.316811e-49 | -8.615850e-47 |
| Msa0307570 | Msa0624940 | 0.800769 | 1.233755e-48 | -8.615850e-47 |
| Msa0312530 | Msa0624940 | 0.817763 | 2.785463e-52 | -8.615850e-47 |
| Msa0322900 | Msa0624940 | 0.844603 | 6.824629e-59 | -8.615850e-47 |
| Msa0358400 | Msa0624940 | 0.822302 | 2.547530e-53 | -8.615850e-47 |
| Msa0483740 | Msa0624940 | 0.812351 | 4.429997e-51 | -8.615850e-47 |
| Msa0485240 | Msa0624940 | 0.800576 | 1.350629e-48 | -8.615850e-47 |
| Msa0518030 | Msa0624940 | 0.804473 | 2.124086e-49 | -8.615850e-47 |
| Msa0521010 | Msa0624940 | 0.814194 | 1.744644e-51 | -8.615850e-47 |
| Msa0527820 | Msa0624940 | 0.804904 | 1.726657e-49 | -8.615850e-47 |
| Msa0529350 | Msa0624940 | 0.955778 | 1.381652e-113 | -8.615850e-47 |
| Msa0531250 | Msa0624940 | 0.806274 | 8.906836e-50 | -8.615850e-47 |
| Msa0549890 | Msa0624940 | 0.846512 | 2.073344e-59 | -8.615850e-47 |
| Msa0556010 | Msa0624940 | 0.817728 | 2.837348e-52 | -8.615850e-47 |
| Msa0581690 | Msa0624940 | 0.828677 | 7.869536e-55 | -8.615850e-47 |
| Msa0582480 | Msa0624940 | 0.804003 | 2.661334e-49 | -8.615850e-47 |
| Msa0586220 | Msa0624940 | 0.803607 | 3.215272e-49 | -8.615850e-47 |
| Msa0588090 | Msa0624940 | 0.803569 | 3.274978e-49 | -8.615850e-47 |
| Msa0597770 | Msa0624940 | 0.809975 | 1.450630e-50 | -8.615850e-47 |
| Msa0601950 | Msa0624940 | 0.805796 | 1.122857e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624940 | MtrunA17_Chr4g0011291 | 97.510 | 522 | 10 | 1 | 1 | 519 | 1 | 522 | 0.0 | 1040 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0624940 | AT2G45300.1 | 74.715 | 526 | 120 | 3 | 1 | 519 | 1 | 520 | 0.0 | 786 |
| Msa0624940 | AT2G45300.2 | 74.715 | 526 | 120 | 3 | 1 | 519 | 1 | 520 | 0.0 | 786 |
| Msa0624940 | AT2G45300.4 | 74.715 | 526 | 120 | 3 | 1 | 519 | 1 | 520 | 0.0 | 786 |
| Msa0624940 | AT2G45300.3 | 74.280 | 521 | 121 | 3 | 1 | 514 | 1 | 515 | 0.0 | 774 |
| Msa0624940 | AT1G48860.1 | 77.917 | 480 | 97 | 2 | 43 | 519 | 48 | 521 | 0.0 | 735 |
| Msa0624940 | AT1G48860.2 | 76.875 | 480 | 83 | 2 | 68 | 519 | 10 | 489 | 0.0 | 718 |
Find 144 sgRNAs with CRISPR-Local
Find 448 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCTATTAAGGAGATTTC+TGG | 0.187856 | 4_3:+3745285 | Msa0624940:CDS |
| CTAGCTGGTGCAGCAGTTAC+TGG | 0.232551 | 4_3:+3748971 | Msa0624940:CDS |
| GATTGTGTTGGAACCTATTA+AGG | 0.234545 | 4_3:+3745275 | Msa0624940:CDS |
| CTTCCAGAAATCTCCTTAAT+AGG | 0.251478 | 4_3:-3745288 | None:intergenic |
| GCCTTCCACAACAGCTTGTT+TGG | 0.260609 | 4_3:-3747073 | None:intergenic |
| TTAACTTCATCTTTAGATTC+AGG | 0.269585 | 4_3:-3747111 | None:intergenic |
| GGGGTTGGTGTGGTAGTTGT+TGG | 0.271119 | 4_3:-3744917 | None:intergenic |
| TTCATTGAGGTCAAGCATTT+GGG | 0.273349 | 4_3:+3745125 | Msa0624940:CDS |
| AATGTATTGGTCTTTGTATT+GGG | 0.289337 | 4_3:-3744952 | None:intergenic |
| TTGTTGAATTGTGAAAATTA+TGG | 0.304085 | 4_3:-3745071 | None:intergenic |
| TGCTAATTGGGACAGGTTCT+TGG | 0.312726 | 4_3:+3748793 | Msa0624940:CDS |
| GTTGGGAAGGGAGGGCTTCC+AGG | 0.314229 | 4_3:+3747858 | Msa0624940:CDS |
| TTTCATTGAGGTCAAGCATT+TGG | 0.318418 | 4_3:+3745124 | Msa0624940:CDS |
| GTACTTGACTGCTTTGCTTA+TGG | 0.322664 | 4_3:+3748652 | Msa0624940:CDS |
| GGGGAATTCTGTTGTGTTGA+AGG | 0.324609 | 4_3:+3745215 | Msa0624940:CDS |
| GATGAAGTTAATTTATTCCT+TGG | 0.328404 | 4_3:+3747123 | Msa0624940:CDS |
| CGAAATGACTTTGAAGTTGA+TGG | 0.332647 | 4_3:+3748742 | Msa0624940:CDS |
| CACTTAACCATTGCATTAGT+TGG | 0.333054 | 4_3:+3744872 | Msa0624940:five_prime_UTR |
| TGGAAATTGTGATGCGGGTA+GGG | 0.335124 | 4_3:+3745194 | Msa0624940:CDS |
| ATGAACTTCACCTACCAAAA+AGG | 0.339652 | 4_3:-3744804 | None:intergenic |
| TCGTAGAACACAGTGCTAAT+TGG | 0.345920 | 4_3:+3748780 | Msa0624940:CDS |
| CAATTGGTCTCTCTCTCATT+CGG | 0.348009 | 4_3:-3747755 | None:intergenic |
| CAATGTATTGGTCTTTGTAT+TGG | 0.351202 | 4_3:-3744953 | None:intergenic |
| CTGTGGGACAAGCAGTTTAC+AGG | 0.352564 | 4_3:+3749015 | Msa0624940:CDS |
| GGCGGAACTATCACGGTTAT+AGG | 0.353223 | 4_3:+3748992 | Msa0624940:CDS |
| CCAGGATCGTTGATGGTAAC+TGG | 0.356754 | 4_3:-3751542 | None:intergenic |
| ACCTTCAACAAAAGCATTGC+CGG | 0.362144 | 4_3:-3748924 | None:intergenic |
| GGAAATTGTGATGCGGGTAG+GGG | 0.363553 | 4_3:+3745195 | Msa0624940:CDS |
| CGCATGCAGGTGAAACTGTC+TGG | 0.373379 | 4_3:+3748614 | Msa0624940:intron |
| TGCTGAAGTTCTTGAAAAGA+TGG | 0.379657 | 4_3:+3749867 | Msa0624940:CDS |
| TCTGGAAGTATTACATTGCC+TGG | 0.379783 | 4_3:+3745303 | Msa0624940:CDS |
| TGTCCACCTGTTCGTATAGT+TGG | 0.380105 | 4_3:+3747840 | Msa0624940:CDS |
| GATGTGACATTCAATTTCTC+AGG | 0.381023 | 4_3:-3751455 | None:intergenic |
| GAAAACAGTGTAACTGTTAC+CGG | 0.381454 | 4_3:+3749910 | Msa0624940:CDS |
| TGTTGAATTGTGAAAATTAT+GGG | 0.390247 | 4_3:-3745070 | None:intergenic |
| TGATTTGGTGTTCAATGTAT+TGG | 0.390421 | 4_3:-3744965 | None:intergenic |
| AACTTTAAGCAAAATTGAAA+TGG | 0.394967 | 4_3:+3745011 | Msa0624940:exon |
| CGTAGAACACAGTGCTAATT+GGG | 0.396858 | 4_3:+3748781 | Msa0624940:CDS |
| TCAAGGACTTGAAAGTAGTC+AGG | 0.407342 | 4_3:-3751584 | None:intergenic |
| GTGTTCAAAATCTTGACTAT+AGG | 0.411643 | 4_3:-3744776 | None:intergenic |
| AATTGGTCTCTCTCTCATTC+GGG | 0.412106 | 4_3:-3747754 | None:intergenic |
| TACTGCAATGCGTCCTTTGA+CGG | 0.424822 | 4_3:+3747155 | Msa0624940:CDS |
| ATGGCAGCTCCGTTGGCCCT+TGG | 0.427336 | 4_3:+3748671 | Msa0624940:CDS |
| TTTGCTTATGGCAGCTCCGT+TGG | 0.432957 | 4_3:+3748664 | Msa0624940:CDS |
| GCAAGTGTCATGGCAACATC+TGG | 0.434911 | 4_3:-3749997 | None:intergenic |
| ACGGCAGCCTTGGTTGCTGC+AGG | 0.440585 | 4_3:+3747174 | Msa0624940:CDS |
| CCCTTCCCAACTATACGAAC+AGG | 0.441067 | 4_3:-3747846 | None:intergenic |
| GGGCCTCCACGGGATTCTTC+CGG | 0.442182 | 4_3:+3749931 | Msa0624940:CDS |
| CCAATTGGAGATTTAGTGTC+TGG | 0.444538 | 4_3:+3747771 | Msa0624940:CDS |
| TTTGGGGCTCTTCAAAATCA+TGG | 0.447364 | 4_3:+3745142 | Msa0624940:CDS |
| TTGAAGTTGATGGAGCGCTT+TGG | 0.447617 | 4_3:+3748752 | Msa0624940:CDS |
| CGAATGAGAGAGAGACCAAT+TGG | 0.449698 | 4_3:+3747756 | Msa0624940:CDS |
| GCGTCCTTTGACGGCAGCCT+TGG | 0.455283 | 4_3:+3747164 | Msa0624940:CDS |
| TTGGAAATTGTGATGCGGGT+AGG | 0.459701 | 4_3:+3745193 | Msa0624940:CDS |
| CCAGTTACCATCAACGATCC+TGG | 0.459791 | 4_3:+3751542 | Msa0624940:CDS |
| GGTGTTATCACACAGTAATC+AGG | 0.461114 | 4_3:-3751431 | None:intergenic |
| CCAGACACTAAATCTCCAAT+TGG | 0.462623 | 4_3:-3747771 | None:intergenic |
| CAAAGGACGCATTGCAGTAC+CGG | 0.465602 | 4_3:-3747151 | None:intergenic |
| CTTGAGGCATTAAAGACCCT+TGG | 0.467801 | 4_3:+3747024 | Msa0624940:CDS |
| AGCATTCTTGTATATTAAGT+AGG | 0.468037 | 4_3:+3751625 | Msa0624940:exon |
| AACTGTTACCGGGCCTCCAC+GGG | 0.469893 | 4_3:+3749921 | Msa0624940:CDS |
| GGTCTAAGTCTTTGTCCAAT+CGG | 0.478048 | 4_3:+3745325 | Msa0624940:CDS |
| AGTGCTAGTTACTTTCTAGC+TGG | 0.478748 | 4_3:+3748956 | Msa0624940:CDS |
| TTCAAAGTCATTTCGACATA+CGG | 0.479092 | 4_3:-3748734 | None:intergenic |
| CAGCAAAATCAGTTTCATTG+AGG | 0.481774 | 4_3:+3745112 | Msa0624940:CDS |
| GTCCACCTGTTCGTATAGTT+GGG | 0.482453 | 4_3:+3747841 | Msa0624940:CDS |
| GTTGTTGCACTATATGCTAA+TGG | 0.485600 | 4_3:+3750021 | Msa0624940:CDS |
| AATTTATTCCTTGGAAATGC+CGG | 0.486192 | 4_3:+3747132 | Msa0624940:CDS |
| TGTGCAACCAGGATCGTTGA+TGG | 0.491375 | 4_3:-3751549 | None:intergenic |
| GGAAGAATCCCGTGGAGGCC+CGG | 0.497540 | 4_3:-3749929 | None:intergenic |
| TAACTGTTACCGGGCCTCCA+CGG | 0.500019 | 4_3:+3749920 | Msa0624940:CDS |
| TGGGACAGGTTCTTGGTCCA+TGG | 0.500853 | 4_3:+3748800 | Msa0624940:CDS |
| GCTGAAGTTCTTGAAAAGAT+GGG | 0.501702 | 4_3:+3749868 | Msa0624940:CDS |
| AGAGAACTTGTTAGATAGTG+AGG | 0.501939 | 4_3:+3746987 | Msa0624940:CDS |
| ATTTCAGATACATACTTGAC+GGG | 0.514182 | 4_3:+3747727 | Msa0624940:intron |
| TTGGGAAGGGAGGGCTTCCA+GGG | 0.514282 | 4_3:+3747859 | Msa0624940:CDS |
| ACTATCACGGTTATAGGCTG+TGG | 0.515721 | 4_3:+3748998 | Msa0624940:CDS |
| ATAGGTTCCAACACAATCTC+CGG | 0.517739 | 4_3:-3745270 | None:intergenic |
| GAAATTGTGATGCGGGTAGG+GGG | 0.517799 | 4_3:+3745196 | Msa0624940:CDS |
| TATTTCAGATACATACTTGA+CGG | 0.519370 | 4_3:+3747726 | Msa0624940:intron |
| CTGGAAGTATTACATTGCCT+GGG | 0.521222 | 4_3:+3745304 | Msa0624940:CDS |
| GCAACCAAGGCTGCCGTCAA+AGG | 0.525534 | 4_3:-3747168 | None:intergenic |
| ACCTGTTCGTATAGTTGGGA+AGG | 0.528976 | 4_3:+3747845 | Msa0624940:CDS |
| TTCGTATAGTTGGGAAGGGA+GGG | 0.530458 | 4_3:+3747850 | Msa0624940:CDS |
| TTTATTGGAAATTGTGATGC+GGG | 0.533802 | 4_3:+3745189 | Msa0624940:CDS |
| AATGCTTTGTAAATCTCTCA+AGG | 0.535419 | 4_3:-3751601 | None:intergenic |
| TACATATGATGATCATAGAA+TGG | 0.536685 | 4_3:+3751484 | Msa0624940:CDS |
| GCAGCCTTGGTTGCTGCAGG+TGG | 0.537285 | 4_3:+3747177 | Msa0624940:CDS |
| GCTTCTAGCTGCTCTATCTG+AGG | 0.547072 | 4_3:+3745353 | Msa0624940:CDS |
| GTGTCTGGTCTTAAGCAACT+TGG | 0.547127 | 4_3:+3747786 | Msa0624940:CDS |
| TTGCTGCAGGTGGAAATACA+AGG | 0.547549 | 4_3:+3747187 | Msa0624940:CDS |
| TGGGAAGGGAGGGCTTCCAG+GGG | 0.548738 | 4_3:+3747860 | Msa0624940:CDS |
| GTTCGTATAGTTGGGAAGGG+AGG | 0.553909 | 4_3:+3747849 | Msa0624940:CDS |
| TTGCAGTACCGGCATTTCCA+AGG | 0.558927 | 4_3:-3747140 | None:intergenic |
| TTAGTTGCCAACTAATGCAA+TGG | 0.562289 | 4_3:-3744879 | None:intergenic |
| CATCTTCCACACGAAGTCCA+AGG | 0.563075 | 4_3:-3747041 | None:intergenic |
| TTGGACAAAGACTTAGACCC+AGG | 0.563173 | 4_3:-3745321 | None:intergenic |
| GGGAAGGGAGGGCTTCCAGG+GGG | 0.563647 | 4_3:+3747861 | Msa0624940:CDS |
| CAAGGACTTGAAAGTAGTCA+GGG | 0.567498 | 4_3:-3751583 | None:intergenic |
| AGATGGGAGCTAAAGTTACA+TGG | 0.567569 | 4_3:+3749884 | Msa0624940:CDS |
| CCTTCAACAAAAGCATTGCC+GGG | 0.568002 | 4_3:-3748923 | None:intergenic |
| GCCTTGCAAGACTTTCCGAC+CGG | 0.570695 | 4_3:-3749950 | None:intergenic |
| GTATTGGTCTTTGTATTGGG+AGG | 0.574526 | 4_3:-3744949 | None:intergenic |
| AACACAGTGCTAATTGGGAC+AGG | 0.576861 | 4_3:+3748786 | Msa0624940:CDS |
| TGATGATCATAGAATGGCCA+TGG | 0.577715 | 4_3:+3751490 | Msa0624940:CDS |
| GGTCCCACTGCTATTAGAGA+TGG | 0.578119 | 4_3:+3750042 | Msa0624940:CDS |
| GCTGTTGTGGAAGGCAGTGG+TGG | 0.582862 | 4_3:+3747081 | Msa0624940:CDS |
| AGCTAGAAGCAAAATCCGAT+TGG | 0.585461 | 4_3:-3745340 | None:intergenic |
| AACAACCAAACAAGCTGTTG+TGG | 0.587688 | 4_3:+3747068 | Msa0624940:CDS |
| ATCTTCCACACGAAGTCCAA+GGG | 0.589211 | 4_3:-3747040 | None:intergenic |
| ACCAAACAAGCTGTTGTGGA+AGG | 0.592554 | 4_3:+3747072 | Msa0624940:CDS |
| CTAGGAGCAATAGTTGAAGA+AGG | 0.594639 | 4_3:+3751407 | Msa0624940:CDS |
| GGATATTCATTACATGCTTG+AGG | 0.596449 | 4_3:+3747008 | Msa0624940:CDS |
| ATTTCCACCTGCAGCAACCA+AGG | 0.596983 | 4_3:-3747181 | None:intergenic |
| CAAGCTGTTGTGGAAGGCAG+TGG | 0.597069 | 4_3:+3747078 | Msa0624940:CDS |
| AAAGACCCTTGGACTTCGTG+TGG | 0.599980 | 4_3:+3747035 | Msa0624940:CDS |
| TCCGGTCGGAAAGTCTTGCA+AGG | 0.600579 | 4_3:+3749949 | Msa0624940:CDS |
| CTTTATTGGAAATTGTGATG+CGG | 0.603694 | 4_3:+3745188 | Msa0624940:CDS |
| GACAGGTTCTTGGTCCATGG+AGG | 0.603780 | 4_3:+3748803 | Msa0624940:CDS |
| AGTTACTGGCGGAACTATCA+CGG | 0.604333 | 4_3:+3748985 | Msa0624940:CDS |
| TGCAACAACAGCAAGTGTCA+TGG | 0.606229 | 4_3:-3750007 | None:intergenic |
| AGCAGCAAGTGAAAATGCCA+TGG | 0.609806 | 4_3:-3751507 | None:intergenic |
| CTATCACGGTTATAGGCTGT+GGG | 0.615693 | 4_3:+3748999 | Msa0624940:CDS |
| CTCAATCTCAACATCACCAA+GGG | 0.617444 | 4_3:-3748687 | None:intergenic |
| CCTGTTCGTATAGTTGGGAA+GGG | 0.622183 | 4_3:+3747846 | Msa0624940:CDS |
| AATCTGCACAGAACTCAGAA+AGG | 0.627914 | 4_3:+3751157 | Msa0624940:CDS |
| TTCCCAACTATACGAACAGG+TGG | 0.629795 | 4_3:-3747843 | None:intergenic |
| TCAACGATCCTGGTTGCACA+AGG | 0.630949 | 4_3:+3751552 | Msa0624940:CDS |
| TGCGCCGCCGGAGATTGTGT+TGG | 0.631894 | 4_3:+3745263 | Msa0624940:CDS |
| TCAACATCACCAAGGGCCAA+CGG | 0.634886 | 4_3:-3748680 | None:intergenic |
| CTCCACGGGATTCTTCCGGT+CGG | 0.638233 | 4_3:+3749935 | Msa0624940:CDS |
| GTGACATTCAATTTCTCAGG+TGG | 0.643818 | 4_3:-3751452 | None:intergenic |
| ATACCATCTCTAATAGCAGT+GGG | 0.648802 | 4_3:-3750045 | None:intergenic |
| GCTGGTGCAGCAGTTACTGG+CGG | 0.649225 | 4_3:+3748974 | Msa0624940:CDS |
| CATACCATCTCTAATAGCAG+TGG | 0.651100 | 4_3:-3750046 | None:intergenic |
| TCATTGAGGTCAAGCATTTG+GGG | 0.651769 | 4_3:+3745126 | Msa0624940:CDS |
| ATTGGTCTCTCTCTCATTCG+GGG | 0.653517 | 4_3:-3747753 | None:intergenic |
| TTCCGACCGGAAGAATCCCG+TGG | 0.664740 | 4_3:-3749937 | None:intergenic |
| AAAACAGTGTAACTGTTACC+GGG | 0.672809 | 4_3:+3749911 | Msa0624940:CDS |
| CTGTTGTGGAAGGCAGTGGT+GGG | 0.674586 | 4_3:+3747082 | Msa0624940:CDS |
| TCTCAATCTCAACATCACCA+AGG | 0.684401 | 4_3:-3748688 | None:intergenic |
| TTTCAGATACATACTTGACG+GGG | 0.713014 | 4_3:+3747728 | Msa0624940:intron |
| GGTTCCAACACAATCTCCGG+CGG | 0.714320 | 4_3:-3745267 | None:intergenic |
| CGACCGGAAGAATCCCGTGG+AGG | 0.725610 | 4_3:-3749934 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTAAAATAGGTAATTA+AGG | + | chr4_3:3746129-3746148 | Msa0624940:intron | 10.0% |
| !!! | AAATTTTGTATGTATTTATG+TGG | + | chr4_3:3745543-3745562 | Msa0624940:intron | 15.0% |
| !!! | AATTTTGATAGTATTGATTT+TGG | + | chr4_3:3745933-3745952 | Msa0624940:intron | 15.0% |
| !!! | TGAAGACAAATATTTAAAAT+AGG | + | chr4_3:3746120-3746139 | Msa0624940:intron | 15.0% |
| !!! | TCATATAGTTATTCTTATTT+TGG | + | chr4_3:3746392-3746411 | Msa0624940:intron | 15.0% |
| !! | TACAATGATAAGTTATAATT+TGG | + | chr4_3:3746443-3746462 | Msa0624940:intron | 15.0% |
| !! | ACAATGATAAGTTATAATTT+GGG | + | chr4_3:3746444-3746463 | Msa0624940:intron | 15.0% |
| !!! | ATAGTTGATTTAAAAATCAA+TGG | - | chr4_3:3746830-3746849 | None:intergenic | 15.0% |
| !! | AAAATATATTTAATTCACCA+TGG | + | chr4_3:3747221-3747240 | Msa0624940:intron | 15.0% |
| !! | TTCTTCATAAAATACATTAT+AGG | - | chr4_3:3747586-3747605 | None:intergenic | 15.0% |
| !!! | TATATTTTAGCATGTTTTTT+TGG | + | chr4_3:3747667-3747686 | Msa0624940:intron | 15.0% |
| !! | TAATAGTTATTATAAAGATG+TGG | - | chr4_3:3748172-3748191 | None:intergenic | 15.0% |
| !! | ATAACTATTATAATACACTA+CGG | + | chr4_3:3748182-3748201 | Msa0624940:intron | 15.0% |
| !!! | ATTTCTTTTCAAAGAAAAAT+TGG | - | chr4_3:3748487-3748506 | None:intergenic | 15.0% |
| !!! | TAATAATTATTGAGTATTGT+CGG | - | chr4_3:3749180-3749199 | None:intergenic | 15.0% |
| !! | ATTATCATATTCACATAAAA+GGG | - | chr4_3:3749478-3749497 | None:intergenic | 15.0% |
| !! | TATTATCATATTCACATAAA+AGG | - | chr4_3:3749479-3749498 | None:intergenic | 15.0% |
| !! | ATAATATCTTTCCAAATAAA+AGG | + | chr4_3:3749493-3749512 | Msa0624940:intron | 15.0% |
| !!! | AAACATTTAATCCTTTTATT+TGG | - | chr4_3:3749507-3749526 | None:intergenic | 15.0% |
| !! | TAAACATATAGTCATATATT+TGG | - | chr4_3:3749582-3749601 | None:intergenic | 15.0% |
| !!! | ATTTAGCTGAATTATTTTTT+CGG | + | chr4_3:3749640-3749659 | Msa0624940:intron | 15.0% |
| !!! | TCAAAACTACATTTTTTTTA+AGG | + | chr4_3:3750603-3750622 | Msa0624940:intron | 15.0% |
| !!! | CAAAACTACATTTTTTTTAA+GGG | + | chr4_3:3750604-3750623 | Msa0624940:intron | 15.0% |
| !!! | AAAACTACATTTTTTTTAAG+GGG | + | chr4_3:3750605-3750624 | Msa0624940:intron | 15.0% |
| !!! | ATGTTTTGATAATATTGGAT+TGG | - | chr4_3:3744754-3744773 | None:intergenic | 20.0% |
| !! | AACTTTAAGCAAAATTGAAA+TGG | + | chr4_3:3745011-3745030 | Msa0624940:exon | 20.0% |
| !! | TGTTGAATTGTGAAAATTAT+GGG | - | chr4_3:3745073-3745092 | None:intergenic | 20.0% |
| !! | TTGTTGAATTGTGAAAATTA+TGG | - | chr4_3:3745074-3745093 | None:intergenic | 20.0% |
| !!! | AAATCTTGATTTTGAAGTTT+TGG | + | chr4_3:3745511-3745530 | Msa0624940:intron | 20.0% |
| !! | AAGGTAAAGTAATTTATGTT+TGG | + | chr4_3:3745626-3745645 | Msa0624940:intron | 20.0% |
| !! | TTCAAGATAGAATCAATTAT+GGG | + | chr4_3:3745727-3745746 | Msa0624940:intron | 20.0% |
| !! | ATAATTAATCTTGACAAGTT+TGG | - | chr4_3:3745779-3745798 | None:intergenic | 20.0% |
| !!! | TTACACTTTTGTACATTTTA+TGG | + | chr4_3:3745844-3745863 | Msa0624940:intron | 20.0% |
| !!! | AATTGATTCTTAACAATTCA+TGG | + | chr4_3:3746007-3746026 | Msa0624940:intron | 20.0% |
| !!! | AAACACAAATAAAACCTTTT+TGG | - | chr4_3:3746077-3746096 | None:intergenic | 20.0% |
| !!! | CCTTTATTAAATTACTTTTG+TGG | - | chr4_3:3746251-3746270 | None:intergenic | 20.0% |
| !! | CCACAAAAGTAATTTAATAA+AGG | + | chr4_3:3746248-3746267 | Msa0624940:intron | 20.0% |
| !! | TTTAAGAAGATTGACTAATA+TGG | - | chr4_3:3747519-3747538 | None:intergenic | 20.0% |
| !! | TCTAATTAGAAAACCAAATA+GGG | - | chr4_3:3748410-3748429 | None:intergenic | 20.0% |
| !! | ATCTAATTAGAAAACCAAAT+AGG | - | chr4_3:3748411-3748430 | None:intergenic | 20.0% |
| !! | TGGGATAATAAGATTAAAAA+TGG | - | chr4_3:3748591-3748610 | None:intergenic | 20.0% |
| !!! | GATGATATTGATTCATATAA+AGG | - | chr4_3:3749097-3749116 | None:intergenic | 20.0% |
| !! | GAACAAATATAAAAAGATAG+AGG | - | chr4_3:3749145-3749164 | None:intergenic | 20.0% |
| !!! | ATTTTATATGGAACATTGTA+GGG | + | chr4_3:3749320-3749339 | Msa0624940:intron | 20.0% |
| !! | TTTCTAATTTCTTCATTGTA+AGG | + | chr4_3:3749392-3749411 | Msa0624940:intron | 20.0% |
| !! | ATGAGTAATAGATAAAAGTA+AGG | - | chr4_3:3749430-3749449 | None:intergenic | 20.0% |
| !! | TTTAGTGTAATCATTGTATT+TGG | - | chr4_3:3749556-3749575 | None:intergenic | 20.0% |
| !! | TATATGACTATATGTTTACA+AGG | + | chr4_3:3749584-3749603 | Msa0624940:intron | 20.0% |
| !!! | TAACTTTGTCCATTTTTTAA+AGG | + | chr4_3:3749831-3749850 | Msa0624940:intron | 20.0% |
| !!! | AACTTTGTCCATTTTTTAAA+GGG | + | chr4_3:3749832-3749851 | Msa0624940:intron | 20.0% |
| !! | ATGATAATAGTGAAGAAATA+TGG | - | chr4_3:3750250-3750269 | None:intergenic | 20.0% |
| !!! | TTTTGTAAAATGTGAACAAA+AGG | + | chr4_3:3750762-3750781 | Msa0624940:intron | 20.0% |
| !! | TTTGTAAAATGTGAACAAAA+GGG | + | chr4_3:3750763-3750782 | Msa0624940:intron | 20.0% |
| !! | TTTGAACACATTTTCCTTTT+TGG | + | chr4_3:3744790-3744809 | Msa0624940:five_prime_UTR | 25.0% |
| !!! | AATGTATTGGTCTTTGTATT+GGG | - | chr4_3:3744955-3744974 | None:intergenic | 25.0% |
| !!! | ATTGTTGATTTTGCTTAACT+GGG | - | chr4_3:3745037-3745056 | None:intergenic | 25.0% |
| ! | CATAAAAATGGAGTCTTTAT+TGG | + | chr4_3:3745174-3745193 | Msa0624940:CDS | 25.0% |
| ! | TTATGTATTTAGCGTATGTT+TGG | + | chr4_3:3745403-3745422 | Msa0624940:intron | 25.0% |
| ! | TTATGCATTTAATGTGTGTT+TGG | + | chr4_3:3745474-3745493 | Msa0624940:intron | 25.0% |
| ! | TTTGTATGTATTTATGTGGT+TGG | + | chr4_3:3745547-3745566 | Msa0624940:intron | 25.0% |
| ! | TCTATCTTGAAGCTAAAAAT+TGG | - | chr4_3:3745718-3745737 | None:intergenic | 25.0% |
| ! | CTTCAAGATAGAATCAATTA+TGG | + | chr4_3:3745726-3745745 | Msa0624940:intron | 25.0% |
| ! | TCAAGATAGAATCAATTATG+GGG | + | chr4_3:3745728-3745747 | Msa0624940:intron | 25.0% |
| !! | AATGTACAAAAGTGTAAGTT+TGG | - | chr4_3:3745841-3745860 | None:intergenic | 25.0% |
| !!! | AAAGTGATTTTGACTAAAAG+TGG | + | chr4_3:3745959-3745978 | Msa0624940:intron | 25.0% |
| ! | TAGACATGTAATTACCAAAA+AGG | + | chr4_3:3746060-3746079 | Msa0624940:intron | 25.0% |
| ! | TTATCATTGTAGATCTTTCA+TGG | - | chr4_3:3746434-3746453 | None:intergenic | 25.0% |
| ! | ATGATAAGTTATAATTTGGG+AGG | + | chr4_3:3746447-3746466 | Msa0624940:intron | 25.0% |
| !! | TATTTTGTCATACACACTTT+CGG | - | chr4_3:3746537-3746556 | None:intergenic | 25.0% |
| ! | AAGTACACTTTCATAAACAT+GGG | + | chr4_3:3746567-3746586 | Msa0624940:intron | 25.0% |
| ! | AAAGTGAGAAGCTAAATTAT+CGG | - | chr4_3:3746609-3746628 | None:intergenic | 25.0% |
| !!! | TATTCTACTGTGTTTTATTC+AGG | + | chr4_3:3746951-3746970 | Msa0624940:intron | 25.0% |
| !!! | ATTCTACTGTGTTTTATTCA+GGG | + | chr4_3:3746952-3746971 | Msa0624940:intron | 25.0% |
| ! | TTAACTTCATCTTTAGATTC+AGG | - | chr4_3:3747114-3747133 | None:intergenic | 25.0% |
| ! | GATGAAGTTAATTTATTCCT+TGG | + | chr4_3:3747123-3747142 | Msa0624940:CDS | 25.0% |
| ! | TAGAAAATGTTGTCAATTAG+CGG | + | chr4_3:3747336-3747355 | Msa0624940:intron | 25.0% |
| ! | GAACTTTATAACAGGATAAA+AGG | - | chr4_3:3747494-3747513 | None:intergenic | 25.0% |
| ! | ATATGGATGAACTTTATAAC+AGG | - | chr4_3:3747502-3747521 | None:intergenic | 25.0% |
| ! | TATTTCAGATACATACTTGA+CGG | + | chr4_3:3747726-3747745 | Msa0624940:intron | 25.0% |
| ! | TGTGTTTATATCACATACAT+TGG | + | chr4_3:3747943-3747962 | Msa0624940:intron | 25.0% |
| ! | AAGCGAAGATAAATAAAAAG+TGG | - | chr4_3:3747995-3748014 | None:intergenic | 25.0% |
| ! | AGTTATTATAAAGATGTGGA+GGG | - | chr4_3:3748168-3748187 | None:intergenic | 25.0% |
| ! | TAGTTATTATAAAGATGTGG+AGG | - | chr4_3:3748169-3748188 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | - | chr4_3:3748208-3748227 | None:intergenic | 25.0% |
| ! | CTTATACATAAGCACTTATA+TGG | - | chr4_3:3748242-3748261 | None:intergenic | 25.0% |
| !! | AAAATGGATCAAATGACTTT+TGG | - | chr4_3:3748575-3748594 | None:intergenic | 25.0% |
| ! | TTAATCTCATTGCATTAAGA+CGG | - | chr4_3:3748877-3748896 | None:intergenic | 25.0% |
| !! | ATTGATTCATATAAAGGACA+GGG | - | chr4_3:3749091-3749110 | None:intergenic | 25.0% |
| !!! | TATTGATTCATATAAAGGAC+AGG | - | chr4_3:3749092-3749111 | None:intergenic | 25.0% |
| ! | AATATCATCATGTGAACAAT+GGG | + | chr4_3:3749108-3749127 | Msa0624940:intron | 25.0% |
| ! | AAAAAGATAGAGGACAAAAA+TGG | - | chr4_3:3749135-3749154 | None:intergenic | 25.0% |
| ! | AGTAGTGAAATATCATTATC+TGG | - | chr4_3:3749258-3749277 | None:intergenic | 25.0% |
| !! | CATTTTATATGGAACATTGT+AGG | + | chr4_3:3749319-3749338 | Msa0624940:intron | 25.0% |
| !!! | TTTGGTAATGAACAGTTTAA+GGG | - | chr4_3:3749538-3749557 | None:intergenic | 25.0% |
| !!! | ATTTGGTAATGAACAGTTTA+AGG | - | chr4_3:3749539-3749558 | None:intergenic | 25.0% |
| !! | AAATTGATTCTATCATTACC+AGG | + | chr4_3:3749608-3749627 | Msa0624940:intron | 25.0% |
| !! | TTACATCTCCCTTTAAAAAA+TGG | - | chr4_3:3749843-3749862 | None:intergenic | 25.0% |
| ! | AACATCTTAGATTATGTCTT+AGG | + | chr4_3:3750175-3750194 | Msa0624940:intron | 25.0% |
| !! | AACAGTACTTTTCTTAACTT+TGG | + | chr4_3:3750396-3750415 | Msa0624940:intron | 25.0% |
| ! | CAATAATCATGATGCTTAAA+AGG | - | chr4_3:3750450-3750469 | None:intergenic | 25.0% |
| !! | CTTTTAAGCATCATGATTAT+TGG | + | chr4_3:3750448-3750467 | Msa0624940:intron | 25.0% |
| ! | GGAATCTTGAGTATATAAAT+TGG | + | chr4_3:3750469-3750488 | Msa0624940:intron | 25.0% |
| !! | TATTTTGCAACTGTTATTGA+GGG | + | chr4_3:3750660-3750679 | Msa0624940:intron | 25.0% |
| ! | TTGTAAAATGTGAACAAAAG+GGG | + | chr4_3:3750764-3750783 | Msa0624940:intron | 25.0% |
| ! | ATTTATTAACTTAACCCACT+TGG | + | chr4_3:3751241-3751260 | Msa0624940:intron | 25.0% |
| ! | TTTATTAACTTAACCCACTT+GGG | + | chr4_3:3751242-3751261 | Msa0624940:intron | 25.0% |
| ! | TACATATGATGATCATAGAA+TGG | + | chr4_3:3751484-3751503 | Msa0624940:CDS | 25.0% |
| ! | AGCATTCTTGTATATTAAGT+AGG | + | chr4_3:3751625-3751644 | Msa0624940:exon | 25.0% |
| !!! | CAAAGTTGTGAGTATTTTTT+TGG | + | chr4_3:3751670-3751689 | Msa0624940:three_prime_UTR | 25.0% |
| !!! | AGGCGATGTTTTGATAATAT+TGG | - | chr4_3:3744759-3744778 | None:intergenic | 30.0% |
| GTGTTCAAAATCTTGACTAT+AGG | - | chr4_3:3744779-3744798 | None:intergenic | 30.0% | |
| !! | AACACATTTTCCTTTTTGGT+AGG | + | chr4_3:3744794-3744813 | Msa0624940:five_prime_UTR | 30.0% |
| !! | CAATGTATTGGTCTTTGTAT+TGG | - | chr4_3:3744956-3744975 | None:intergenic | 30.0% |
| !! | TGATTTGGTGTTCAATGTAT+TGG | - | chr4_3:3744968-3744987 | None:intergenic | 30.0% |
| !!! | GATTGTTGATTTTGCTTAAC+TGG | - | chr4_3:3745038-3745057 | None:intergenic | 30.0% |
| !! | GAAACTGATTTTGCTGAATT+GGG | - | chr4_3:3745108-3745127 | None:intergenic | 30.0% |
| !! | TGAAACTGATTTTGCTGAAT+TGG | - | chr4_3:3745109-3745128 | None:intergenic | 30.0% |
| ! | TGGAGTTTGAAGCATAAAAA+TGG | + | chr4_3:3745162-3745181 | Msa0624940:CDS | 30.0% |
| CTTTATTGGAAATTGTGATG+CGG | + | chr4_3:3745188-3745207 | Msa0624940:CDS | 30.0% | |
| TTTATTGGAAATTGTGATGC+GGG | + | chr4_3:3745189-3745208 | Msa0624940:CDS | 30.0% | |
| ! | TATTTATGTGGTTGGTTATG+TGG | + | chr4_3:3745555-3745574 | Msa0624940:intron | 30.0% |
| !! | GATTTTGAGTGAATTGATTC+CGG | + | chr4_3:3745589-3745608 | Msa0624940:intron | 30.0% |
| !!! | TACACCTCTAGAATCAATTT+TGG | + | chr4_3:3745798-3745817 | Msa0624940:intron | 30.0% |
| TGTGTTTATATGACAAACGT+TGG | + | chr4_3:3746090-3746109 | Msa0624940:intron | 30.0% | |
| GACTATCTTACAAATGTGTT+TGG | - | chr4_3:3746278-3746297 | None:intergenic | 30.0% | |
| ! | TACCTAGTCAAACAATTTTG+TGG | - | chr4_3:3746346-3746365 | None:intergenic | 30.0% |
| ! | TGTTTATGAAAGTGTACTTC+AGG | - | chr4_3:3746566-3746585 | None:intergenic | 30.0% |
| GAAGTACACTTTCATAAACA+TGG | + | chr4_3:3746566-3746585 | Msa0624940:intron | 30.0% | |
| AGTACACTTTCATAAACATG+GGG | + | chr4_3:3746568-3746587 | Msa0624940:intron | 30.0% | |
| ! | AATTTAGCTTCTCACTTTAG+TGG | + | chr4_3:3746611-3746630 | Msa0624940:intron | 30.0% |
| TAGAATAGTCTCTATTCAAC+AGG | - | chr4_3:3746938-3746957 | None:intergenic | 30.0% | |
| AATTTATTCCTTGGAAATGC+CGG | + | chr4_3:3747132-3747151 | Msa0624940:CDS | 30.0% | |
| TTGGTAAATAATGGTTGTAG+AGG | + | chr4_3:3747257-3747276 | Msa0624940:intron | 30.0% | |
| GATAGCAGAAAATAAAACAG+TGG | - | chr4_3:3747407-3747426 | None:intergenic | 30.0% | |
| !!! | CTGTTTTATTTTCTGCTATC+TGG | + | chr4_3:3747407-3747426 | Msa0624940:intron | 30.0% |
| ! | TTTTATGAAGAATGCACCAA+AGG | + | chr4_3:3747594-3747613 | Msa0624940:intron | 30.0% |
| ATTTCAGATACATACTTGAC+GGG | + | chr4_3:3747727-3747746 | Msa0624940:intron | 30.0% | |
| CGGCATAAAATGAAAACTAA+TGG | - | chr4_3:3747900-3747919 | None:intergenic | 30.0% | |
| GTTATTATAAAGATGTGGAG+GGG | - | chr4_3:3748167-3748186 | None:intergenic | 30.0% | |
| ATGTATTTGAGCTTATCTAC+TGG | - | chr4_3:3748374-3748393 | None:intergenic | 30.0% | |
| TCAAATACATCAATCCAAAC+AGG | + | chr4_3:3748384-3748403 | Msa0624940:intron | 30.0% | |
| TACCATTCATATGCCTATTA+TGG | + | chr4_3:3748452-3748471 | Msa0624940:intron | 30.0% | |
| ATCCATAATAGGCATATGAA+TGG | - | chr4_3:3748457-3748476 | None:intergenic | 30.0% | |
| !! | AATGACTTTTGGAGAGAATA+AGG | - | chr4_3:3748564-3748583 | None:intergenic | 30.0% |
| AAAGTACAAGTAGGTTTCTA+CGG | + | chr4_3:3748829-3748848 | Msa0624940:intron | 30.0% | |
| !!! | TAACTGTTGTTTTTCGTATC+AGG | + | chr4_3:3748897-3748916 | Msa0624940:intron | 30.0% |
| CAATATCATCATGTGAACAA+TGG | + | chr4_3:3749107-3749126 | Msa0624940:intron | 30.0% | |
| TGATATTTCACTACTCAAAC+TGG | + | chr4_3:3749263-3749282 | Msa0624940:intron | 30.0% | |
| !! | ATTGTCAGCGTCATTTTATA+TGG | + | chr4_3:3749308-3749327 | Msa0624940:intron | 30.0% |
| ! | TTTCCTTTTGTCTTTGTTCA+TGG | + | chr4_3:3749350-3749369 | Msa0624940:intron | 30.0% |
| ! | TTCCTTTTGTCTTTGTTCAT+GGG | + | chr4_3:3749351-3749370 | Msa0624940:intron | 30.0% |
| GAAATTAGAAACACAAACGA+CGG | - | chr4_3:3749383-3749402 | None:intergenic | 30.0% | |
| !! | TTTTTCGGTGAGTTCTTTAT+TGG | + | chr4_3:3749655-3749674 | Msa0624940:intron | 30.0% |
| !! | TCTTTGAGTTGATGATTAGA+AGG | + | chr4_3:3749682-3749701 | Msa0624940:intron | 30.0% |
| ! | ATGATTAGAAGGAAGTATGT+AGG | + | chr4_3:3749693-3749712 | Msa0624940:intron | 30.0% |
| ATCAATGAGAATTGAGAAGT+TGG | - | chr4_3:3749740-3749759 | None:intergenic | 30.0% | |
| ! | GACATAATCTAAGATGTTCT+AGG | - | chr4_3:3750173-3750192 | None:intergenic | 30.0% |
| TTTCTTACTGTATATTCCAG+TGG | + | chr4_3:3750305-3750324 | Msa0624940:intron | 30.0% | |
| ATGATGTGATTGTGTGAAAA+TGG | - | chr4_3:3750332-3750351 | None:intergenic | 30.0% | |
| !!! | AAGTTTTTGTTTCGAGTTGA+AGG | + | chr4_3:3750546-3750565 | Msa0624940:intron | 30.0% |
| !!! | AGTTTTTGTTTCGAGTTGAA+GGG | + | chr4_3:3750547-3750566 | Msa0624940:intron | 30.0% |
| ! | CTATTTTGCAACTGTTATTG+AGG | + | chr4_3:3750659-3750678 | Msa0624940:intron | 30.0% |
| ! | ATTTTGCAACTGTTATTGAG+GGG | + | chr4_3:3750661-3750680 | Msa0624940:intron | 30.0% |
| !! | GTTTGATTTTCTAACCTCAA+GGG | - | chr4_3:3750700-3750719 | None:intergenic | 30.0% |
| !! | TGTTTGATTTTCTAACCTCA+AGG | - | chr4_3:3750701-3750720 | None:intergenic | 30.0% |
| !! | CGTTTTAAACAGTTGAACAA+TGG | + | chr4_3:3750736-3750755 | Msa0624940:intron | 30.0% |
| TGTAAAATGTGAACAAAAGG+GGG | + | chr4_3:3750765-3750784 | Msa0624940:intron | 30.0% | |
| TAACTGAATGTAACATGTGT+TGG | + | chr4_3:3750921-3750940 | Msa0624940:intron | 30.0% | |
| ! | AATGTAACATGTGTTGGTAT+TGG | + | chr4_3:3750927-3750946 | Msa0624940:intron | 30.0% |
| ! | GTATTTCATCTATTTTCCAG+TGG | + | chr4_3:3751097-3751116 | Msa0624940:intron | 30.0% |
| TTAGAAACTACAAAGGAAGT+AGG | - | chr4_3:3751196-3751215 | None:intergenic | 30.0% | |
| ACTTTGTTGATATTTCAGCT+AGG | + | chr4_3:3751389-3751408 | Msa0624940:intron | 30.0% | |
| AATGCTTTGTAAATCTCTCA+AGG | - | chr4_3:3751604-3751623 | None:intergenic | 30.0% | |
| !!! | TTGTGAGTATTTTTTTGGCT+TGG | + | chr4_3:3751675-3751694 | Msa0624940:three_prime_UTR | 30.0% |
| ATGAACTTCACCTACCAAAA+AGG | - | chr4_3:3744807-3744826 | None:intergenic | 35.0% | |
| CACTTAACCATTGCATTAGT+TGG | + | chr4_3:3744872-3744891 | Msa0624940:five_prime_UTR | 35.0% | |
| TTAGTTGCCAACTAATGCAA+TGG | - | chr4_3:3744882-3744901 | None:intergenic | 35.0% | |
| ! | TGTATTGGGAGGATTTTGTT+GGG | - | chr4_3:3744941-3744960 | None:intergenic | 35.0% |
| ! | TTGTATTGGGAGGATTTTGT+TGG | - | chr4_3:3744942-3744961 | None:intergenic | 35.0% |
| ! | TTTTGCTGAATTGGGTTTGT+TGG | - | chr4_3:3745100-3745119 | None:intergenic | 35.0% |
| CAGCAAAATCAGTTTCATTG+AGG | + | chr4_3:3745112-3745131 | Msa0624940:CDS | 35.0% | |
| TTTCATTGAGGTCAAGCATT+TGG | + | chr4_3:3745124-3745143 | Msa0624940:CDS | 35.0% | |
| TTCATTGAGGTCAAGCATTT+GGG | + | chr4_3:3745125-3745144 | Msa0624940:CDS | 35.0% | |
| GATTGTGTTGGAACCTATTA+AGG | + | chr4_3:3745275-3745294 | Msa0624940:CDS | 35.0% | |
| GAACCTATTAAGGAGATTTC+TGG | + | chr4_3:3745285-3745304 | Msa0624940:CDS | 35.0% | |
| CTTCCAGAAATCTCCTTAAT+AGG | - | chr4_3:3745291-3745310 | None:intergenic | 35.0% | |
| TTAGCGTATGTTTGGTTATG+CGG | + | chr4_3:3745411-3745430 | Msa0624940:intron | 35.0% | |
| ! | AGAGCCAAAATTGATTCTAG+AGG | - | chr4_3:3745805-3745824 | None:intergenic | 35.0% |
| ! | ATGGTTCTGTGATTAGAAGT+TGG | + | chr4_3:3745863-3745882 | Msa0624940:intron | 35.0% |
| ATTATCTTTACGCGTGTGTT+TGG | + | chr4_3:3745891-3745910 | Msa0624940:intron | 35.0% | |
| ! | GACTAAAAGTGGTTTGTGTT+TGG | + | chr4_3:3745970-3745989 | Msa0624940:intron | 35.0% |
| ! | AAATCGATTCTTCATGAAGC+AGG | - | chr4_3:3746224-3746243 | None:intergenic | 35.0% |
| !! | GCTTCATGAAGAATCGATTT+TGG | + | chr4_3:3746224-3746243 | Msa0624940:intron | 35.0% |
| AGATGAAAAAAACCTGCTTC+AGG | + | chr4_3:3746303-3746322 | Msa0624940:intron | 35.0% | |
| !! | CTTCAGGAAGAATCGATTTT+TGG | + | chr4_3:3746319-3746338 | Msa0624940:intron | 35.0% |
| GACCACAAAATTGTTTGACT+AGG | + | chr4_3:3746341-3746360 | Msa0624940:intron | 35.0% | |
| ! | GTACATCTGAAGTCATGATA+GGG | - | chr4_3:3746484-3746503 | None:intergenic | 35.0% |
| ! | TGTACATCTGAAGTCATGAT+AGG | - | chr4_3:3746485-3746504 | None:intergenic | 35.0% |
| CACAATGTGAATTGTGGATT+TGG | - | chr4_3:3746639-3746658 | None:intergenic | 35.0% | |
| TGGATTCACAATGTGAATTG+TGG | - | chr4_3:3746645-3746664 | None:intergenic | 35.0% | |
| !! | AAGTGAGTGTTGAACTTTAG+AGG | + | chr4_3:3746703-3746722 | Msa0624940:intron | 35.0% |
| TATCGTTGCACTTTATTCTG+TGG | + | chr4_3:3746850-3746869 | Msa0624940:intron | 35.0% | |
| ATTCAACAGGACATCTATGA+AGG | - | chr4_3:3746925-3746944 | None:intergenic | 35.0% | |
| !! | AGAGAACTTGTTAGATAGTG+AGG | + | chr4_3:3746987-3747006 | Msa0624940:CDS | 35.0% |
| GGATATTCATTACATGCTTG+AGG | + | chr4_3:3747008-3747027 | Msa0624940:CDS | 35.0% | |
| !! | GAAGCAGTGTTGGTAAATAA+TGG | + | chr4_3:3747248-3747267 | Msa0624940:intron | 35.0% |
| ! | ACCTCACTACTTTCTTTTGT+AGG | + | chr4_3:3747639-3747658 | Msa0624940:intron | 35.0% |
| TCCTACAAAAGAAAGTAGTG+AGG | - | chr4_3:3747643-3747662 | None:intergenic | 35.0% | |
| TTTCAGATACATACTTGACG+GGG | + | chr4_3:3747728-3747747 | Msa0624940:intron | 35.0% | |
| !! | GCAGATGTTGATTGTTTTCT+TGG | + | chr4_3:3747810-3747829 | Msa0624940:CDS | 35.0% |
| GTGATATAAACACACAAGCA+CGG | - | chr4_3:3747937-3747956 | None:intergenic | 35.0% | |
| ACATCAGTTACAGTGAAATG+TGG | - | chr4_3:3748034-3748053 | None:intergenic | 35.0% | |
| TGACTGTGCATTTGAATTAC+TGG | - | chr4_3:3748066-3748085 | None:intergenic | 35.0% | |
| TGCTTTATGAACTTCGCTAT+TGG | + | chr4_3:3748108-3748127 | Msa0624940:intron | 35.0% | |
| GCTTTATGAACTTCGCTATT+GGG | + | chr4_3:3748109-3748128 | Msa0624940:intron | 35.0% | |
| ! | AACTGTTTTCTAAGCTCTCA+GGG | + | chr4_3:3748293-3748312 | Msa0624940:intron | 35.0% |
| TAAGCACTTATGAGACTGTT+TGG | - | chr4_3:3748349-3748368 | None:intergenic | 35.0% | |
| TAGAAAGGATATACAGGTGA+GGG | - | chr4_3:3748434-3748453 | None:intergenic | 35.0% | |
| GAATGGTAGAAAGGATATAC+AGG | - | chr4_3:3748440-3748459 | None:intergenic | 35.0% | |
| TAGGCATATGAATGGTAGAA+AGG | - | chr4_3:3748449-3748468 | None:intergenic | 35.0% | |
| CAGTTTACAGGTATATATGC+TGG | + | chr4_3:3749027-3749046 | Msa0624940:intron | 35.0% | |
| ATCCCATGAACAAAGACAAA+AGG | - | chr4_3:3749356-3749375 | None:intergenic | 35.0% | |
| ATATTCACATAAAAGGGACG+AGG | - | chr4_3:3749472-3749491 | None:intergenic | 35.0% | |
| AGAATTGAGAAGTTGGATAG+TGG | - | chr4_3:3749733-3749752 | None:intergenic | 35.0% | |
| TGCTGAAGTTCTTGAAAAGA+TGG | + | chr4_3:3749867-3749886 | Msa0624940:CDS | 35.0% | |
| GCTGAAGTTCTTGAAAAGAT+GGG | + | chr4_3:3749868-3749887 | Msa0624940:CDS | 35.0% | |
| GAAAACAGTGTAACTGTTAC+CGG | + | chr4_3:3749910-3749929 | Msa0624940:CDS | 35.0% | |
| AAAACAGTGTAACTGTTACC+GGG | + | chr4_3:3749911-3749930 | Msa0624940:CDS | 35.0% | |
| GTTGTTGCACTATATGCTAA+TGG | + | chr4_3:3750021-3750040 | Msa0624940:CDS | 35.0% | |
| ATACCATCTCTAATAGCAGT+GGG | - | chr4_3:3750048-3750067 | None:intergenic | 35.0% | |
| TTCAATAGTCAAGCAAAGCA+GGG | - | chr4_3:3750370-3750389 | None:intergenic | 35.0% | |
| TTTCAATAGTCAAGCAAAGC+AGG | - | chr4_3:3750371-3750390 | None:intergenic | 35.0% | |
| ACCATGTGCGATTGTATTAT+GGG | - | chr4_3:3750426-3750445 | None:intergenic | 35.0% | |
| AACCATGTGCGATTGTATTA+TGG | - | chr4_3:3750427-3750446 | None:intergenic | 35.0% | |
| GTAAAATGTGAACAAAAGGG+GGG | + | chr4_3:3750766-3750785 | Msa0624940:intron | 35.0% | |
| TAAAATGTGAACAAAAGGGG+GGG | + | chr4_3:3750767-3750786 | Msa0624940:intron | 35.0% | |
| ! | TTTTCTCATGTAAGCACAAC+TGG | + | chr4_3:3750798-3750817 | Msa0624940:intron | 35.0% |
| AGACAAAGTATATGTAGCAC+TGG | - | chr4_3:3750998-3751017 | None:intergenic | 35.0% | |
| GATGTGACATTCAATTTCTC+AGG | - | chr4_3:3751458-3751477 | None:intergenic | 35.0% | |
| ! | TATTGGGAGGATTTTGTTGG+GGG | - | chr4_3:3744939-3744958 | None:intergenic | 40.0% |
| ! | GTATTGGGAGGATTTTGTTG+GGG | - | chr4_3:3744940-3744959 | None:intergenic | 40.0% |
| !! | GTATTGGTCTTTGTATTGGG+AGG | - | chr4_3:3744952-3744971 | None:intergenic | 40.0% |
| TCATTGAGGTCAAGCATTTG+GGG | + | chr4_3:3745126-3745145 | Msa0624940:CDS | 40.0% | |
| ! | TTTGGGGCTCTTCAAAATCA+TGG | + | chr4_3:3745142-3745161 | Msa0624940:CDS | 40.0% |
| ATAGGTTCCAACACAATCTC+CGG | - | chr4_3:3745273-3745292 | None:intergenic | 40.0% | |
| !! | TCTGGAAGTATTACATTGCC+TGG | + | chr4_3:3745303-3745322 | Msa0624940:CDS | 40.0% |
| !! | CTGGAAGTATTACATTGCCT+GGG | + | chr4_3:3745304-3745323 | Msa0624940:CDS | 40.0% |
| GGTCTAAGTCTTTGTCCAAT+CGG | + | chr4_3:3745325-3745344 | Msa0624940:CDS | 40.0% | |
| AGCTAGAAGCAAAATCCGAT+TGG | - | chr4_3:3745343-3745362 | None:intergenic | 40.0% | |
| !! | ACCTTCATCTCACTTTTAGC+CGG | - | chr4_3:3745611-3745630 | None:intergenic | 40.0% |
| GATAGAATCAATTATGGGGC+AGG | + | chr4_3:3745732-3745751 | Msa0624940:intron | 40.0% | |
| ! | AAATCGATTCTTCCTGAAGC+AGG | - | chr4_3:3746318-3746337 | None:intergenic | 40.0% |
| TGTTTGACTAGGTAGCCTAA+AGG | + | chr4_3:3746352-3746371 | Msa0624940:intron | 40.0% | |
| ! | TATTCCAACACCTAGCCTTT+AGG | - | chr4_3:3746370-3746389 | None:intergenic | 40.0% |
| ACACTTTCATAAACATGGGG+TGG | + | chr4_3:3746571-3746590 | Msa0624940:intron | 40.0% | |
| AACAACCAAACAAGCTGTTG+TGG | + | chr4_3:3747068-3747087 | Msa0624940:CDS | 40.0% | |
| GGAGAAGATGTACTTTGTTG+TGG | - | chr4_3:3747473-3747492 | None:intergenic | 40.0% | |
| AGAATGCACCAAAGGATCAT+CGG | + | chr4_3:3747602-3747621 | Msa0624940:intron | 40.0% | |
| ! | AATTGGTCTCTCTCTCATTC+GGG | - | chr4_3:3747757-3747776 | None:intergenic | 40.0% |
| ! | CAATTGGTCTCTCTCTCATT+CGG | - | chr4_3:3747758-3747777 | None:intergenic | 40.0% |
| CCAGACACTAAATCTCCAAT+TGG | - | chr4_3:3747774-3747793 | None:intergenic | 40.0% | |
| CCAATTGGAGATTTAGTGTC+TGG | + | chr4_3:3747771-3747790 | Msa0624940:CDS | 40.0% | |
| ! | GGAGTGTAAAGCTCTAACTA+AGG | + | chr4_3:3748136-3748155 | Msa0624940:intron | 40.0% |
| ATTATAAAGATGTGGAGGGG+AGG | - | chr4_3:3748164-3748183 | None:intergenic | 40.0% | |
| !! | TAATACACTACGGCCTTGTT+TGG | + | chr4_3:3748192-3748211 | Msa0624940:intron | 40.0% |
| ! | GAACTGTTTTCTAAGCTCTC+AGG | + | chr4_3:3748292-3748311 | Msa0624940:intron | 40.0% |
| AAAACCAAATAGGGCCTGTT+TGG | - | chr4_3:3748401-3748420 | None:intergenic | 40.0% | |
| GTAGAAAGGATATACAGGTG+AGG | - | chr4_3:3748435-3748454 | None:intergenic | 40.0% | |
| ! | TTGGTGACTCGATCCATAAT+AGG | - | chr4_3:3748468-3748487 | None:intergenic | 40.0% |
| !! | GACTTTTGGAGAGAATAAGG+AGG | - | chr4_3:3748561-3748580 | None:intergenic | 40.0% |
| GTACTTGACTGCTTTGCTTA+TGG | + | chr4_3:3748652-3748671 | Msa0624940:CDS | 40.0% | |
| CTCAATCTCAACATCACCAA+GGG | - | chr4_3:3748690-3748709 | None:intergenic | 40.0% | |
| TCTCAATCTCAACATCACCA+AGG | - | chr4_3:3748691-3748710 | None:intergenic | 40.0% | |
| TCGTAGAACACAGTGCTAAT+TGG | + | chr4_3:3748780-3748799 | Msa0624940:CDS | 40.0% | |
| CGTAGAACACAGTGCTAATT+GGG | + | chr4_3:3748781-3748800 | Msa0624940:CDS | 40.0% | |
| ! | ACTTGTACTTTTGACCTCCA+TGG | - | chr4_3:3748820-3748839 | None:intergenic | 40.0% |
| ! | TGGAGGTCAAAAGTACAAGT+AGG | + | chr4_3:3748820-3748839 | Msa0624940:intron | 40.0% |
| !! | ACCTTCAACAAAAGCATTGC+CGG | - | chr4_3:3748927-3748946 | None:intergenic | 40.0% |
| ! | AGTGCTAGTTACTTTCTAGC+TGG | + | chr4_3:3748956-3748975 | Msa0624940:CDS | 40.0% |
| ATGGAACATTGTAGGGACTT+AGG | + | chr4_3:3749327-3749346 | Msa0624940:intron | 40.0% | |
| CAGCTAAATTACTTGCAACC+TGG | - | chr4_3:3749629-3749648 | None:intergenic | 40.0% | |
| AGATGGGAGCTAAAGTTACA+TGG | + | chr4_3:3749884-3749903 | Msa0624940:CDS | 40.0% | |
| CATACCATCTCTAATAGCAG+TGG | - | chr4_3:3750049-3750068 | None:intergenic | 40.0% | |
| CACTGCTATTAGAGATGGTA+TGG | + | chr4_3:3750047-3750066 | Msa0624940:intron | 40.0% | |
| ATTGTGTGAAAATGGTCCAC+TGG | - | chr4_3:3750324-3750343 | None:intergenic | 40.0% | |
| CCATGTGCGATTGTATTATG+GGG | - | chr4_3:3750425-3750444 | None:intergenic | 40.0% | |
| !! | GTCGAGTGTGATTTAACTTG+AGG | + | chr4_3:3750516-3750535 | Msa0624940:intron | 40.0% |
| !! | GTGATTTAACTTGAGGAGCT+TGG | + | chr4_3:3750523-3750542 | Msa0624940:intron | 40.0% |
| ! | GATTTTCTAACCTCAAGGGA+CGG | - | chr4_3:3750696-3750715 | None:intergenic | 40.0% |
| TATTGGACACCAACACTTGT+AGG | + | chr4_3:3750944-3750963 | Msa0624940:intron | 40.0% | |
| ! | GCACTGGCACTTAAAATTGA+AGG | - | chr4_3:3750982-3751001 | None:intergenic | 40.0% |
| ! | TCTATTTTCCAGTGGCAAGT+TGG | + | chr4_3:3751105-3751124 | Msa0624940:intron | 40.0% |
| AATCTGCACAGAACTCAGAA+AGG | + | chr4_3:3751157-3751176 | Msa0624940:CDS | 40.0% | |
| CAGCGACTTAGAAACTACAA+AGG | - | chr4_3:3751203-3751222 | None:intergenic | 40.0% | |
| TTAACTTAACCCACTTGGGT+TGG | + | chr4_3:3751246-3751265 | Msa0624940:intron | 40.0% | |
| CTAGGAGCAATAGTTGAAGA+AGG | + | chr4_3:3751407-3751426 | Msa0624940:CDS | 40.0% | |
| ! | GGTGTTATCACACAGTAATC+AGG | - | chr4_3:3751434-3751453 | None:intergenic | 40.0% |
| GTGACATTCAATTTCTCAGG+TGG | - | chr4_3:3751455-3751474 | None:intergenic | 40.0% | |
| TGATGATCATAGAATGGCCA+TGG | + | chr4_3:3751490-3751509 | Msa0624940:CDS | 40.0% | |
| ! | AATGTTTTCCTTGTGCAACC+AGG | - | chr4_3:3751563-3751582 | None:intergenic | 40.0% |
| CAAGGACTTGAAAGTAGTCA+GGG | - | chr4_3:3751586-3751605 | None:intergenic | 40.0% | |
| TCAAGGACTTGAAAGTAGTC+AGG | - | chr4_3:3751587-3751606 | None:intergenic | 40.0% | |
| TTGGAAATTGTGATGCGGGT+AGG | + | chr4_3:3745193-3745212 | Msa0624940:CDS | 45.0% | |
| TGGAAATTGTGATGCGGGTA+GGG | + | chr4_3:3745194-3745213 | Msa0624940:CDS | 45.0% | |
| GGGGAATTCTGTTGTGTTGA+AGG | + | chr4_3:3745215-3745234 | Msa0624940:CDS | 45.0% | |
| TTGGACAAAGACTTAGACCC+AGG | - | chr4_3:3745324-3745343 | None:intergenic | 45.0% | |
| TCCGGCTAAAAGTGAGATGA+AGG | + | chr4_3:3745607-3745626 | Msa0624940:intron | 45.0% | |
| ! | CATCTGAAGTCATGATAGGG+CGG | - | chr4_3:3746481-3746500 | None:intergenic | 45.0% |
| ! | CTTGAGGCATTAAAGACCCT+TGG | + | chr4_3:3747024-3747043 | Msa0624940:CDS | 45.0% |
| ATCTTCCACACGAAGTCCAA+GGG | - | chr4_3:3747043-3747062 | None:intergenic | 45.0% | |
| ACCAAACAAGCTGTTGTGGA+AGG | + | chr4_3:3747072-3747091 | Msa0624940:CDS | 45.0% | |
| TACTGCAATGCGTCCTTTGA+CGG | + | chr4_3:3747155-3747174 | Msa0624940:CDS | 45.0% | |
| TTGCTGCAGGTGGAAATACA+AGG | + | chr4_3:3747187-3747206 | Msa0624940:CDS | 45.0% | |
| CCAACACTGCTTCAAAACCA+TGG | - | chr4_3:3747241-3747260 | None:intergenic | 45.0% | |
| !!! | CCATGGTTTTGAAGCAGTGT+TGG | + | chr4_3:3747238-3747257 | Msa0624940:intron | 45.0% |
| TCATCACTCCGATGATCCTT+TGG | - | chr4_3:3747613-3747632 | None:intergenic | 45.0% | |
| ! | ATTGGTCTCTCTCTCATTCG+GGG | - | chr4_3:3747756-3747775 | None:intergenic | 45.0% |
| CGAATGAGAGAGAGACCAAT+TGG | + | chr4_3:3747756-3747775 | Msa0624940:CDS | 45.0% | |
| !! | GTGTCTGGTCTTAAGCAACT+TGG | + | chr4_3:3747786-3747805 | Msa0624940:CDS | 45.0% |
| TGTCCACCTGTTCGTATAGT+TGG | + | chr4_3:3747840-3747859 | Msa0624940:CDS | 45.0% | |
| GTCCACCTGTTCGTATAGTT+GGG | + | chr4_3:3747841-3747860 | Msa0624940:CDS | 45.0% | |
| TTCCCAACTATACGAACAGG+TGG | - | chr4_3:3747846-3747865 | None:intergenic | 45.0% | |
| ACCTGTTCGTATAGTTGGGA+AGG | + | chr4_3:3747845-3747864 | Msa0624940:CDS | 45.0% | |
| CCTGTTCGTATAGTTGGGAA+GGG | + | chr4_3:3747846-3747865 | Msa0624940:CDS | 45.0% | |
| TTCGTATAGTTGGGAAGGGA+GGG | + | chr4_3:3747850-3747869 | Msa0624940:CDS | 45.0% | |
| GCACGGATAAATTATCGACG+CGG | - | chr4_3:3747920-3747939 | None:intergenic | 45.0% | |
| TTCGCTTTCCTATACCCACA+TGG | + | chr4_3:3748008-3748027 | Msa0624940:intron | 45.0% | |
| AAATGTGGCCATGTGGGTAT+AGG | - | chr4_3:3748019-3748038 | None:intergenic | 45.0% | |
| ACAGTGAAATGTGGCCATGT+GGG | - | chr4_3:3748025-3748044 | None:intergenic | 45.0% | |
| TACAGTGAAATGTGGCCATG+TGG | - | chr4_3:3748026-3748045 | None:intergenic | 45.0% | |
| ATGAACTTCGCTATTGGGAC+TGG | + | chr4_3:3748114-3748133 | Msa0624940:intron | 45.0% | |
| TGAACTTCGCTATTGGGACT+GGG | + | chr4_3:3748115-3748134 | Msa0624940:intron | 45.0% | |
| CAATCCAAACAGGCCCTATT+TGG | + | chr4_3:3748394-3748413 | Msa0624940:intron | 45.0% | |
| TATTATCCCATCTCGCATGC+AGG | + | chr4_3:3748601-3748620 | Msa0624940:intron | 45.0% | |
| !! | TTGAAGTTGATGGAGCGCTT+TGG | + | chr4_3:3748752-3748771 | Msa0624940:CDS | 45.0% |
| AACACAGTGCTAATTGGGAC+AGG | + | chr4_3:3748786-3748805 | Msa0624940:CDS | 45.0% | |
| TGCTAATTGGGACAGGTTCT+TGG | + | chr4_3:3748793-3748812 | Msa0624940:CDS | 45.0% | |
| AGTAGGTTTCTACGGTTTCG+AGG | + | chr4_3:3748837-3748856 | Msa0624940:intron | 45.0% | |
| ! | GTTTTTCGTATCAGGTCTCC+CGG | + | chr4_3:3748905-3748924 | Msa0624940:intron | 45.0% |
| !! | CCTTCAACAAAAGCATTGCC+GGG | - | chr4_3:3748926-3748945 | None:intergenic | 45.0% |
| AGTTACTGGCGGAACTATCA+CGG | + | chr4_3:3748985-3749004 | Msa0624940:CDS | 45.0% | |
| ACTATCACGGTTATAGGCTG+TGG | + | chr4_3:3748998-3749017 | Msa0624940:CDS | 45.0% | |
| CTATCACGGTTATAGGCTGT+GGG | + | chr4_3:3748999-3749018 | Msa0624940:CDS | 45.0% | |
| TGCAACAACAGCAAGTGTCA+TGG | - | chr4_3:3750010-3750029 | None:intergenic | 45.0% | |
| CCCCATAATACAATCGCACA+TGG | + | chr4_3:3750422-3750441 | Msa0624940:intron | 45.0% | |
| GATTTAAACTCCGTCCCTTG+AGG | + | chr4_3:3750683-3750702 | Msa0624940:intron | 45.0% | |
| TCTCATGTAAGCACAACTGG+AGG | + | chr4_3:3750801-3750820 | Msa0624940:intron | 45.0% | |
| GTGTGATGTCCTACAAGTGT+TGG | - | chr4_3:3750956-3750975 | None:intergenic | 45.0% | |
| GAATCGAACCTAAGACCTTG+AGG | - | chr4_3:3751310-3751329 | None:intergenic | 45.0% | |
| CTAAACTAGCCCACCCAAAT+TGG | - | chr4_3:3751342-3751361 | None:intergenic | 45.0% | |
| AGCAGCAAGTGAAAATGCCA+TGG | - | chr4_3:3751510-3751529 | None:intergenic | 45.0% | |
| !! | GCATTTTCACTTGCTGCTTG+TGG | + | chr4_3:3751512-3751531 | Msa0624940:CDS | 45.0% |
| !!! | TTTTTATTTATTTTATGATT+TGG | - | chr4_3:3744983-3745002 | None:intergenic | 5.0% |
| !!! | GATTTTGTTGGGGGTTGGTG+TGG | - | chr4_3:3744930-3744949 | None:intergenic | 50.0% |
| GGAAATTGTGATGCGGGTAG+GGG | + | chr4_3:3745195-3745214 | Msa0624940:CDS | 50.0% | |
| GAAATTGTGATGCGGGTAGG+GGG | + | chr4_3:3745196-3745215 | Msa0624940:CDS | 50.0% | |
| ! | GCTTCTAGCTGCTCTATCTG+AGG | + | chr4_3:3745353-3745372 | Msa0624940:CDS | 50.0% |
| TACGCGTGTGTTTGGTTGTG+CGG | + | chr4_3:3745899-3745918 | Msa0624940:intron | 50.0% | |
| CAGGAAATCCTAGCTTCTGC+GGG | - | chr4_3:3746205-3746224 | None:intergenic | 50.0% | |
| GCAGGAAATCCTAGCTTCTG+CGG | - | chr4_3:3746206-3746225 | None:intergenic | 50.0% | |
| GACTAGGTAGCCTAAAGGCT+AGG | + | chr4_3:3746357-3746376 | Msa0624940:intron | 50.0% | |
| GTAGCCTAAAGGCTAGGTGT+TGG | + | chr4_3:3746363-3746382 | Msa0624940:intron | 50.0% | |
| TGCTCGCACACACATGTTTC+TGG | - | chr4_3:3746665-3746684 | None:intergenic | 50.0% | |
| AAAGACCCTTGGACTTCGTG+TGG | + | chr4_3:3747035-3747054 | Msa0624940:CDS | 50.0% | |
| CATCTTCCACACGAAGTCCA+AGG | - | chr4_3:3747044-3747063 | None:intergenic | 50.0% | |
| ! | GCCTTCCACAACAGCTTGTT+TGG | - | chr4_3:3747076-3747095 | None:intergenic | 50.0% |
| !! | TTGCAGTACCGGCATTTCCA+AGG | - | chr4_3:3747143-3747162 | None:intergenic | 50.0% |
| CAAAGGACGCATTGCAGTAC+CGG | - | chr4_3:3747154-3747173 | None:intergenic | 50.0% | |
| ATTTCCACCTGCAGCAACCA+AGG | - | chr4_3:3747184-3747203 | None:intergenic | 50.0% | |
| !! | GTTGTAGAGGCGCTATCACA+TGG | + | chr4_3:3747270-3747289 | Msa0624940:intron | 50.0% |
| !! | TAGAGGCGCTATCACATGGT+GGG | + | chr4_3:3747274-3747293 | Msa0624940:intron | 50.0% |
| CCCTTCCCAACTATACGAAC+AGG | - | chr4_3:3747849-3747868 | None:intergenic | 50.0% | |
| GTTCGTATAGTTGGGAAGGG+AGG | + | chr4_3:3747849-3747868 | Msa0624940:CDS | 50.0% | |
| GTTTCACCTGCATGCGAGAT+GGG | - | chr4_3:3748610-3748629 | None:intergenic | 50.0% | |
| AGTTTCACCTGCATGCGAGA+TGG | - | chr4_3:3748611-3748630 | None:intergenic | 50.0% | |
| TTTGCTTATGGCAGCTCCGT+TGG | + | chr4_3:3748664-3748683 | Msa0624940:CDS | 50.0% | |
| TCAACATCACCAAGGGCCAA+CGG | - | chr4_3:3748683-3748702 | None:intergenic | 50.0% | |
| ! | CCCGGCAATGCTTTTGTTGA+AGG | + | chr4_3:3748923-3748942 | Msa0624940:CDS | 50.0% |
| GGCGGAACTATCACGGTTAT+AGG | + | chr4_3:3748992-3749011 | Msa0624940:CDS | 50.0% | |
| CTGTGGGACAAGCAGTTTAC+AGG | + | chr4_3:3749015-3749034 | Msa0624940:CDS | 50.0% | |
| GCAAGTGTCATGGCAACATC+TGG | - | chr4_3:3750000-3750019 | None:intergenic | 50.0% | |
| GGTCCCACTGCTATTAGAGA+TGG | + | chr4_3:3750042-3750061 | Msa0624940:CDS | 50.0% | |
| GTCAAGCAAAGCAGGGTTAG+TGG | - | chr4_3:3750363-3750382 | None:intergenic | 50.0% | |
| TTCACTCTCCAACTTGCCAC+TGG | - | chr4_3:3751116-3751135 | None:intergenic | 50.0% | |
| TCGAACCTAAGACCTTGAGG+AGG | - | chr4_3:3751307-3751326 | None:intergenic | 50.0% | |
| ! | ATTCCCCCTGGTGCCAATTT+GGG | + | chr4_3:3751326-3751345 | Msa0624940:intron | 50.0% |
| !! | CCAGGATCGTTGATGGTAAC+TGG | - | chr4_3:3751545-3751564 | None:intergenic | 50.0% |
| CCAGTTACCATCAACGATCC+TGG | + | chr4_3:3751542-3751561 | Msa0624940:CDS | 50.0% | |
| TGTGCAACCAGGATCGTTGA+TGG | - | chr4_3:3751552-3751571 | None:intergenic | 50.0% | |
| TCAACGATCCTGGTTGCACA+AGG | + | chr4_3:3751552-3751571 | Msa0624940:CDS | 50.0% | |
| !! | GGGGTTGGTGTGGTAGTTGT+TGG | - | chr4_3:3744920-3744939 | None:intergenic | 55.0% |
| ! | GGGAGGATTTTGTTGGGGGT+TGG | - | chr4_3:3744935-3744954 | None:intergenic | 55.0% |
| GGTTCCAACACAATCTCCGG+CGG | - | chr4_3:3745270-3745289 | None:intergenic | 55.0% | |
| CGTGTGTTTGGTTGTGCGGT+GGG | + | chr4_3:3745903-3745922 | Msa0624940:intron | 55.0% | |
| GTGTGTTTGGTTGTGCGGTG+GGG | + | chr4_3:3745904-3745923 | Msa0624940:intron | 55.0% | |
| CTTGCTTACCCGCAGAAGCT+AGG | + | chr4_3:3746194-3746213 | Msa0624940:intron | 55.0% | |
| CAAGCTGTTGTGGAAGGCAG+TGG | + | chr4_3:3747078-3747097 | Msa0624940:CDS | 55.0% | |
| CTGTTGTGGAAGGCAGTGGT+GGG | + | chr4_3:3747082-3747101 | Msa0624940:CDS | 55.0% | |
| !! | GTAGAGGCGCTATCACATGG+TGG | + | chr4_3:3747273-3747292 | Msa0624940:intron | 55.0% |
| CGCATGCAGGTGAAACTGTC+TGG | + | chr4_3:3748614-3748633 | Msa0624940:intron | 55.0% | |
| TGGGACAGGTTCTTGGTCCA+TGG | + | chr4_3:3748800-3748819 | Msa0624940:CDS | 55.0% | |
| GACAGGTTCTTGGTCCATGG+AGG | + | chr4_3:3748803-3748822 | Msa0624940:CDS | 55.0% | |
| CTAGCTGGTGCAGCAGTTAC+TGG | + | chr4_3:3748971-3748990 | Msa0624940:CDS | 55.0% | |
| TAACTGTTACCGGGCCTCCA+CGG | + | chr4_3:3749920-3749939 | Msa0624940:CDS | 55.0% | |
| TCCGGTCGGAAAGTCTTGCA+AGG | + | chr4_3:3749949-3749968 | Msa0624940:CDS | 55.0% | |
| GCCTTGCAAGACTTTCCGAC+CGG | - | chr4_3:3749953-3749972 | None:intergenic | 55.0% | |
| !! | TTAACCCACTTGGGTTGGCC+CGG | + | chr4_3:3751251-3751270 | Msa0624940:intron | 55.0% |
| AGGTCTCAAGCCAACACCAC+CGG | - | chr4_3:3751273-3751292 | None:intergenic | 55.0% | |
| !! | GTGGTGTTGGCTTGAGACCT+TGG | + | chr4_3:3751273-3751292 | Msa0624940:intron | 55.0% |
| ! | TTGAGGAGGAGCACACTCCA+AGG | - | chr4_3:3751293-3751312 | None:intergenic | 55.0% |
| TTGGAGTGTGCTCCTCCTCA+AGG | + | chr4_3:3751292-3751311 | Msa0624940:intron | 55.0% | |
| GTGCTCCTCCTCAAGGTCTT+AGG | + | chr4_3:3751299-3751318 | Msa0624940:intron | 55.0% | |
| GTCTTAGGTTCGATTCCCCC+TGG | + | chr4_3:3751314-3751333 | Msa0624940:intron | 55.0% | |
| ! | GATTCCCCCTGGTGCCAATT+TGG | + | chr4_3:3751325-3751344 | Msa0624940:intron | 55.0% |
| GCGTGTGTTTGGTTGTGCGG+TGG | + | chr4_3:3745902-3745921 | Msa0624940:intron | 60.0% | |
| GCTGTTGTGGAAGGCAGTGG+TGG | + | chr4_3:3747081-3747100 | Msa0624940:CDS | 60.0% | |
| GCAACCAAGGCTGCCGTCAA+AGG | - | chr4_3:3747171-3747190 | None:intergenic | 60.0% | |
| TTGGGAAGGGAGGGCTTCCA+GGG | + | chr4_3:3747859-3747878 | Msa0624940:CDS | 60.0% | |
| GGCTTCCAGGGGGAAAGGTA+AGG | + | chr4_3:3747871-3747890 | Msa0624940:intron | 60.0% | |
| ! | GGTAGCCTTACCTTTCCCCC+TGG | - | chr4_3:3747879-3747898 | None:intergenic | 60.0% |
| GCTGGTGCAGCAGTTACTGG+CGG | + | chr4_3:3748974-3748993 | Msa0624940:CDS | 60.0% | |
| AACTGTTACCGGGCCTCCAC+GGG | + | chr4_3:3749921-3749940 | Msa0624940:CDS | 60.0% | |
| CTCCACGGGATTCTTCCGGT+CGG | + | chr4_3:3749935-3749954 | Msa0624940:CDS | 60.0% | |
| TTCCGACCGGAAGAATCCCG+TGG | - | chr4_3:3749940-3749959 | None:intergenic | 60.0% | |
| GGTCTCAAGCCAACACCACC+GGG | - | chr4_3:3751272-3751291 | None:intergenic | 60.0% | |
| CCACCCAAATTGGCACCAGG+GGG | - | chr4_3:3751332-3751351 | None:intergenic | 60.0% | |
| CCCACCCAAATTGGCACCAG+GGG | - | chr4_3:3751333-3751352 | None:intergenic | 60.0% | |
| ! | CCCCTGGTGCCAATTTGGGT+GGG | + | chr4_3:3751330-3751349 | Msa0624940:intron | 60.0% |
| GCCCACCCAAATTGGCACCA+GGG | - | chr4_3:3751334-3751353 | None:intergenic | 60.0% | |
| AGCCCACCCAAATTGGCACC+AGG | - | chr4_3:3751335-3751354 | None:intergenic | 60.0% | |
| TGCGCCGCCGGAGATTGTGT+TGG | + | chr4_3:3745263-3745282 | Msa0624940:CDS | 65.0% | |
| GCGTCCTTTGACGGCAGCCT+TGG | + | chr4_3:3747164-3747183 | Msa0624940:CDS | 65.0% | |
| ACGGCAGCCTTGGTTGCTGC+AGG | + | chr4_3:3747174-3747193 | Msa0624940:CDS | 65.0% | |
| GCAGCCTTGGTTGCTGCAGG+TGG | + | chr4_3:3747177-3747196 | Msa0624940:CDS | 65.0% | |
| GTTGGGAAGGGAGGGCTTCC+AGG | + | chr4_3:3747858-3747877 | Msa0624940:CDS | 65.0% | |
| TGGGAAGGGAGGGCTTCCAG+GGG | + | chr4_3:3747860-3747879 | Msa0624940:CDS | 65.0% | |
| ATGGCAGCTCCGTTGGCCCT+TGG | + | chr4_3:3748671-3748690 | Msa0624940:CDS | 65.0% | |
| GGAAGAATCCCGTGGAGGCC+CGG | - | chr4_3:3749932-3749951 | None:intergenic | 65.0% | |
| GGGCCTCCACGGGATTCTTC+CGG | + | chr4_3:3749931-3749950 | Msa0624940:CDS | 65.0% | |
| CGACCGGAAGAATCCCGTGG+AGG | - | chr4_3:3749937-3749956 | None:intergenic | 65.0% | |
| ACCACCGGGCCAACCCAAGT+GGG | - | chr4_3:3751258-3751277 | None:intergenic | 65.0% | |
| !! | TTGGGTTGGCCCGGTGGTGT+TGG | + | chr4_3:3751260-3751279 | Msa0624940:intron | 65.0% |
| ! | CCCCCTGGTGCCAATTTGGG+TGG | + | chr4_3:3751329-3751348 | Msa0624940:intron | 65.0% |
| GGGAAGGGAGGGCTTCCAGG+GGG | + | chr4_3:3747861-3747880 | Msa0624940:CDS | 70.0% | |
| GGGAGGGCTTCCAGGGGGAA+AGG | + | chr4_3:3747866-3747885 | Msa0624940:CDS | 70.0% | |
| !! | ACCCACTTGGGTTGGCCCGG+TGG | + | chr4_3:3751254-3751273 | Msa0624940:intron | 70.0% |
| CACCACCGGGCCAACCCAAG+TGG | - | chr4_3:3751259-3751278 | None:intergenic | 70.0% | |
| TGCTGCTGCTGCTGCGCCGC+CGG | + | chr4_3:3745251-3745270 | Msa0624940:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 3744749 | 3751748 | 3744749 | ID=Msa0624940;Name=Msa0624940 |
| chr4_3 | mRNA | 3744749 | 3751748 | 3744749 | ID=Msa0624940-mRNA-1;Parent=Msa0624940;Name=Msa0624940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=281|1|1|1|1|1|8|123|519 |
| chr4_3 | exon | 3744749 | 3745374 | 3744749 | ID=Msa0624940-mRNA-1:exon:874;Parent=Msa0624940-mRNA-1 |
| chr4_3 | exon | 3746973 | 3747208 | 3746973 | ID=Msa0624940-mRNA-1:exon:875;Parent=Msa0624940-mRNA-1 |
| chr4_3 | exon | 3747734 | 3747887 | 3747734 | ID=Msa0624940-mRNA-1:exon:876;Parent=Msa0624940-mRNA-1 |
| chr4_3 | exon | 3748623 | 3748837 | 3748623 | ID=Msa0624940-mRNA-1:exon:877;Parent=Msa0624940-mRNA-1 |
| chr4_3 | exon | 3748919 | 3749036 | 3748919 | ID=Msa0624940-mRNA-1:exon:878;Parent=Msa0624940-mRNA-1 |
| chr4_3 | exon | 3749853 | 3750063 | 3749853 | ID=Msa0624940-mRNA-1:exon:879;Parent=Msa0624940-mRNA-1 |
| chr4_3 | exon | 3751117 | 3751178 | 3751117 | ID=Msa0624940-mRNA-1:exon:880;Parent=Msa0624940-mRNA-1 |
| chr4_3 | exon | 3751407 | 3751748 | 3751407 | ID=Msa0624940-mRNA-1:exon:881;Parent=Msa0624940-mRNA-1 |
| chr4_3 | five_prime_UTR | 3744749 | 3745029 | 3744749 | ID=Msa0624940-mRNA-1:five_prime_utr;Parent=Msa0624940-mRNA-1 |
| chr4_3 | CDS | 3745030 | 3745374 | 3745030 | ID=Msa0624940-mRNA-1:cds;Parent=Msa0624940-mRNA-1 |
| chr4_3 | CDS | 3746973 | 3747208 | 3746973 | ID=Msa0624940-mRNA-1:cds;Parent=Msa0624940-mRNA-1 |
| chr4_3 | CDS | 3747734 | 3747887 | 3747734 | ID=Msa0624940-mRNA-1:cds;Parent=Msa0624940-mRNA-1 |
| chr4_3 | CDS | 3748623 | 3748837 | 3748623 | ID=Msa0624940-mRNA-1:cds;Parent=Msa0624940-mRNA-1 |
| chr4_3 | CDS | 3748919 | 3749036 | 3748919 | ID=Msa0624940-mRNA-1:cds;Parent=Msa0624940-mRNA-1 |
| chr4_3 | CDS | 3749853 | 3750063 | 3749853 | ID=Msa0624940-mRNA-1:cds;Parent=Msa0624940-mRNA-1 |
| chr4_3 | CDS | 3751117 | 3751178 | 3751117 | ID=Msa0624940-mRNA-1:cds;Parent=Msa0624940-mRNA-1 |
| chr4_3 | CDS | 3751407 | 3751625 | 3751407 | ID=Msa0624940-mRNA-1:cds;Parent=Msa0624940-mRNA-1 |
| chr4_3 | three_prime_UTR | 3751626 | 3751748 | 3751626 | ID=Msa0624940-mRNA-1:three_prime_utr;Parent=Msa0624940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
