AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626460 MtrunA17_Chr4g0002381 98.142 969 0 1 1 969 1 951 0.0 1944
Msa0626460 MtrunA17_Chr7g0272401 63.103 290 62 6 43 330 1 247 8.20e-104 323
Msa0626460 MtrunA17_Chr4g0074891 72.034 118 22 1 94 211 1 107 2.80e-50 172
Msa0626460 MtrunA17_Chr7g0272421 84.375 64 10 0 906 969 18 81 9.98e-31 115
Msa0626460 MtrunA17_Chr4g0074881 64.384 73 24 2 314 385 1 72 1.89e-22 92.4
Msa0626460 MtrunA17_Chr5g0400791 64.912 57 20 0 617 673 17 73 4.82e-17 77.0
Msa0626460 MtrunA17_Chr4g0038901 21.674 466 312 12 21 461 19 456 6.44e-15 79.7
Msa0626460 MtrunA17_Chr6g0467491 48.750 80 36 1 594 673 1 75 2.34e-13 66.6
Msa0626460 MtrunA17_Chr4g0034881 22.816 412 267 13 36 422 48 433 1.05e-11 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626460 AT4G31480.7 79.752 968 176 3 1 968 1 948 0.0 1612
Msa0626460 AT4G31480.1 79.752 968 176 3 1 968 1 948 0.0 1612
Msa0626460 AT4G31480.9 79.752 968 176 3 1 968 1 948 0.0 1612
Msa0626460 AT4G31480.5 79.752 968 176 3 1 968 1 948 0.0 1612
Msa0626460 AT4G31480.8 79.752 968 176 3 1 968 1 948 0.0 1612
Msa0626460 AT4G31480.2 79.752 968 176 3 1 968 1 948 0.0 1612
Msa0626460 AT4G31480.4 79.752 968 176 3 1 968 1 948 0.0 1612
Msa0626460 AT4G31480.3 79.752 968 176 3 1 968 24 971 0.0 1610
Msa0626460 AT4G31480.6 79.752 968 176 3 1 968 24 971 0.0 1610
Msa0626460 AT4G31490.1 79.503 966 178 3 1 966 1 946 0.0 1598
Msa0626460 AT4G31490.3 79.503 966 178 3 1 966 1 946 0.0 1598
Msa0626460 AT4G31490.2 79.503 966 178 3 1 966 1 946 0.0 1598
Msa0626460 AT4G23460.1 21.245 466 314 12 21 461 19 456 2.93e-14 77.8
Msa0626460 AT4G11380.1 21.459 466 313 12 21 461 19 456 4.35e-13 73.9
Msa0626460 AT4G11380.2 21.369 482 321 13 5 461 30 478 1.39e-12 72.4

Find 239 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCTGTTTGCTTGATTC+TGG 0.132054 4_3:-6050248 None:intergenic
CTTCAAATTCTTGTGACTTT+TGG 0.156357 4_3:+6052844 Msa0626460:three_prime_UTR
TATAGAAGCATGAGAGAAAA+TGG 0.160944 4_3:-6052747 None:intergenic
TCTTGTGCTCTGTGGATTAT+TGG 0.193178 4_3:+6048968 Msa0626460:CDS
TACTTGTGCTATTAAGTTTC+CGG 0.200425 4_3:+6048766 Msa0626460:CDS
TGACAGATTAAGATCATTTC+AGG 0.201364 4_3:-6047891 None:intergenic
TTGAGATCTCTGATTCTTTC+GGG 0.206526 4_3:+6049256 Msa0626460:CDS
TTCTATCATCACTAGGCTTT+TGG 0.218921 4_3:+6048910 Msa0626460:CDS
GAAAGTTTGTAGGAATAATA+AGG 0.225648 4_3:+6048307 Msa0626460:CDS
CTTTCGGGTGATTTCTTCCT+TGG 0.227308 4_3:+6049271 Msa0626460:CDS
GTGTGAGAAGAAGATGATTT+TGG 0.236027 4_3:-6047480 None:intergenic
ACGAGCTTAAGAGGGATAAT+AGG 0.244193 4_3:+6048528 Msa0626460:CDS
CTTATCAACTTGTGTAGTTT+CGG 0.248514 4_3:+6052785 Msa0626460:three_prime_UTR
ATCCTCAGAGATGGTGTAAA+AGG 0.264720 4_3:-6049062 None:intergenic
ATGTTTGGAGTTAGCAACTA+TGG 0.269674 4_3:+6050181 Msa0626460:CDS
CTTGAGATCTCTGATTCTTT+CGG 0.271553 4_3:+6049255 Msa0626460:CDS
GAGGGATAATAGGGAGATTA+TGG 0.272228 4_3:+6048538 Msa0626460:CDS
ATCTCACTGTGATGTGATTA+TGG 0.272694 4_3:-6047509 None:intergenic
GCATTTGTTGATGGATTTCT+TGG 0.285633 4_3:+6048808 Msa0626460:CDS
TTATCAACTTGTGTAGTTTC+GGG 0.293815 4_3:+6052786 Msa0626460:three_prime_UTR
CAGGGATCTCTGTCTTCTAT+TGG 0.298380 4_3:+6049229 Msa0626460:CDS
AAGGTTTCTTCCACTGAAAC+TGG 0.299306 4_3:+6050281 Msa0626460:CDS
TTCGAGAGATTCTTTGATTT+CGG 0.304898 4_3:-6047676 None:intergenic
TTTCGGGTGATTTCTTCCTT+GGG 0.305867 4_3:+6049272 Msa0626460:CDS
TGGATACTTTCTATCAGATT+CGG 0.310141 4_3:+6048930 Msa0626460:CDS
GCAAGATGAGAGGGAGTTCC+TGG 0.315233 4_3:+6052159 Msa0626460:CDS
ACAGTTACAAATGGTGGTTT+TGG 0.320506 4_3:+6048274 Msa0626460:CDS
TAGGGAGATTATGGTTGATA+TGG 0.324072 4_3:+6048547 Msa0626460:CDS
AGGGAATTGCTCTGAGTCTT+GGG 0.325449 4_3:+6052673 Msa0626460:CDS
ACAACCTGATCAATATTCTT+AGG 0.329715 4_3:-6048653 None:intergenic
AAAATAAAATATAGGCAATA+AGG 0.332619 4_3:-6052952 None:intergenic
TATTGATAGGATTATTGATT+GGG 0.345042 4_3:+6048247 Msa0626460:CDS
GATTATGGTTGATATGGTTA+TGG 0.347749 4_3:+6048553 Msa0626460:CDS
ATATGGTTATGGATGTCCTT+AGG 0.354045 4_3:+6048564 Msa0626460:CDS
GGATACTTTCTATCAGATTC+GGG 0.357062 4_3:+6048931 Msa0626460:CDS
ACTCGACCACTGTGTCTTCT+AGG 0.357892 4_3:+6049125 Msa0626460:CDS
AACTCTCCAGAATTTATGTT+TGG 0.360698 4_3:+6050166 Msa0626460:CDS
TGCTATTAAGTTTCCGGAGG+TGG 0.364681 4_3:+6048772 Msa0626460:CDS
GAGATTATGATATCAATATA+TGG 0.364924 4_3:-6052996 None:intergenic
GCAATCATGCTTCTCCTTAA+CGG 0.368170 4_3:+6047738 Msa0626460:CDS
ATGATAGAAACACGCAGCTT+AGG 0.375297 4_3:-6048896 None:intergenic
TTCCTTCTAATATCATGATT+AGG 0.375355 4_3:-6048599 None:intergenic
TGTTGAGAAATTTCTTGTTT+CGG 0.377476 4_3:+6048139 Msa0626460:CDS
TACTGTTGTGCATTTGTTGA+TGG 0.380765 4_3:+6048799 Msa0626460:CDS
ATATTGATAGGATTATTGAT+TGG 0.381238 4_3:+6048246 Msa0626460:CDS
ACTGAAACTGGAGTTATATT+CGG 0.381365 4_3:+6050293 Msa0626460:CDS
CTAACTCCAAACATAAATTC+TGG 0.384969 4_3:-6050172 None:intergenic
CTCCTAATCATGATATTAGA+AGG 0.385310 4_3:+6048597 Msa0626460:CDS
AATTGATAAAGAAAGTTTGT+AGG 0.393989 4_3:+6048297 Msa0626460:CDS
TGAGTATTGTTTGTCTCTTT+CGG 0.395014 4_3:+6048991 Msa0626460:CDS
ATCGACTTAACGAGCTTAAG+AGG 0.398249 4_3:+6048519 Msa0626460:CDS
TTCACAGTCCTTGTTGATCA+TGG 0.398314 4_3:+6049378 Msa0626460:CDS
CGAGCTTAAGAGGGATAATA+GGG 0.400973 4_3:+6048529 Msa0626460:CDS
AAAGTTTGTAGGAATAATAA+GGG 0.410857 4_3:+6048308 Msa0626460:CDS
ATTAGATTGCTGTGTAATAC+TGG 0.411143 4_3:+6049481 Msa0626460:CDS
CTCTGAGGATGGAGAGGGTC+AGG 0.412565 4_3:+6049075 Msa0626460:CDS
CAGGGAATTGCTCTGAGTCT+TGG 0.412830 4_3:+6052672 Msa0626460:CDS
TCGCGGTCGGTGCAGAACTA+AGG 0.413611 4_3:-6048421 None:intergenic
TGCCTTTGCTTTAATCTCCT+CGG 0.413901 4_3:-6049584 None:intergenic
CTCCATTGTTGAAAGGTTGA+AGG 0.418143 4_3:-6047601 None:intergenic
GCGGGGAGCATGAGAAGAAT+GGG 0.418503 4_3:+6048711 Msa0626460:CDS
TTGATTTCGGTTGCGAGTGC+TGG 0.420907 4_3:-6047663 None:intergenic
AATCGCATTCTTCAGCTCAC+TGG 0.421276 4_3:+6050053 Msa0626460:CDS
AGGGATCTCTGTCTTCTATT+GGG 0.424819 4_3:+6049230 Msa0626460:CDS
AGGAATAATAAGGGAGAGAA+AGG 0.425300 4_3:+6048317 Msa0626460:CDS
AAGGTTGAAGGTTTCAGATC+TGG 0.426676 4_3:-6047589 None:intergenic
AGAAATTGAGAGATCGGTTA+TGG 0.429008 4_3:-6047556 None:intergenic
AGAAATTTCTCAACAATCTC+AGG 0.429922 4_3:-6048131 None:intergenic
TCTATCAGATTCGGGCTGCT+AGG 0.430384 4_3:+6048939 Msa0626460:CDS
CATTTGTTGATGGATTTCTT+GGG 0.431544 4_3:+6048809 Msa0626460:CDS
GAGAACTTTACCGCGAGAAT+CGG 0.432166 4_3:-6047868 None:intergenic
TACACCTAAGAATATTGATC+AGG 0.434043 4_3:+6048649 Msa0626460:CDS
CTGGTGTTCCTTTGTCGAAA+TGG 0.436815 4_3:-6047644 None:intergenic
TCTCTTGTTCAGCTCTGCAT+TGG 0.438702 4_3:+6052515 Msa0626460:intron
GAGGAATGGTTTCGCCGTTA+AGG 0.439775 4_3:-6047752 None:intergenic
TTGACAATGACTATTTGTTA+TGG 0.440338 4_3:+6053025 Msa0626460:three_prime_UTR
GTCTACATAAAATAAAATAT+AGG 0.440433 4_3:-6052960 None:intergenic
TCTGGAGAGTTTCCTTGGTC+CGG 0.441384 4_3:-6050154 None:intergenic
CAATGACTATTTGTTATGGC+TGG 0.442806 4_3:+6053029 Msa0626460:three_prime_UTR
AGCGGGGAGCATGAGAAGAA+TGG 0.445155 4_3:+6048710 Msa0626460:CDS
TGATAGAAACACGCAGCTTA+GGG 0.445334 4_3:-6048895 None:intergenic
TAAATTCTGGAGAGTTTCCT+TGG 0.445694 4_3:-6050159 None:intergenic
TCATGAGAATCATTATCAAT+TGG 0.450088 4_3:-6049442 None:intergenic
TATGGTTATGGATGTCCTTA+GGG 0.454595 4_3:+6048565 Msa0626460:CDS
CTTTAATCTCCTCGGTCTCA+CGG 0.455907 4_3:-6049576 None:intergenic
CGGTGATTTCGAGGTAAAGA+AGG 0.456385 4_3:-6047839 None:intergenic
AAGGAACTCACGGTGGAGTC+AGG 0.457955 4_3:-6052213 None:intergenic
CAAGACTCAGAGCAATTCCC+TGG 0.458458 4_3:-6052671 None:intergenic
TGACATTCATATTGATATCA+TGG 0.459711 4_3:+6050373 Msa0626460:CDS
GACATCAAAGGCTGTGCAGC+AGG 0.460529 4_3:+6049099 Msa0626460:CDS
GTCCCATCGGCAAGAATCGC+AGG 0.461816 4_3:-6049151 None:intergenic
GACAAAGCTTATCTTAAGGT+TGG 0.462489 4_3:+6049315 Msa0626460:CDS
GTCATAGGTTGCTGTAAATA+CGG 0.462568 4_3:+6052132 Msa0626460:intron
ATGAGAAGAATGGGGAGTAT+AGG 0.463060 4_3:+6048720 Msa0626460:CDS
CGCGGTCGGTGCAGAACTAA+GGG 0.465199 4_3:-6048420 None:intergenic
ATCTGAAGAAATTGAGAGAT+CGG 0.470955 4_3:-6047562 None:intergenic
CAGTCTCAAGAGCAGCACTC+TGG 0.477594 4_3:-6049183 None:intergenic
AGCAAGATGCTTCGAGTAAG+AGG 0.478958 4_3:+6048162 Msa0626460:CDS
TTGATAATGATTCTCATGAC+AGG 0.479100 4_3:+6049446 Msa0626460:CDS
CACTGACAAAGCTTATCTTA+AGG 0.479698 4_3:+6049311 Msa0626460:CDS
CTATCAGATTCGGGCTGCTA+GGG 0.480565 4_3:+6048940 Msa0626460:CDS
CTCAGCCCACATAGTTCTAA+AGG 0.487112 4_3:-6050429 None:intergenic
ATCGCATTCTTCAGCTCACT+GGG 0.488030 4_3:+6050054 Msa0626460:CDS
AGAATCAAGCAAACAGATCA+AGG 0.488212 4_3:+6050250 Msa0626460:CDS
GTCACCGCCTACCCTTGTGC+AGG 0.489447 4_3:+6049210 Msa0626460:CDS
GTGATGAGATAAGGAAGATA+TGG 0.490653 4_3:+6049503 Msa0626460:CDS
GCTCAGTACACTTACTCATC+TGG 0.492043 4_3:+6049897 Msa0626460:intron
TAAATTTGAAACTAATGAGT+TGG 0.492863 4_3:-6052873 None:intergenic
TTGTTCAGCTCTGCATTGGA+AGG 0.494510 4_3:+6052519 Msa0626460:intron
AGGTTGTTAAGACGCAGAGC+GGG 0.495077 4_3:+6048693 Msa0626460:CDS
CTTCACAAAGCTCTGCCTGC+AGG 0.495433 4_3:-6049533 None:intergenic
TAAAATCACTTTGAAGCAGA+AGG 0.501025 4_3:+6052698 Msa0626460:CDS
GCTTATCTTAAGGTTGGAAG+AGG 0.501167 4_3:+6049321 Msa0626460:CDS
TCTCACTGTGATGTGATTAT+GGG 0.501401 4_3:-6047508 None:intergenic
TAAAAGTCGATGAGGTCATC+AGG 0.502253 4_3:-6049625 None:intergenic
GACAGATTAAGATCATTTCA+GGG 0.505571 4_3:-6047890 None:intergenic
GCAACTATTAAGCAGTGTCT+TGG 0.506903 4_3:+6049031 Msa0626460:CDS
TCCTGCATCTTGTGCTGATG+TGG 0.507317 4_3:+6050406 Msa0626460:CDS
GGTTGTTATGATGCTTAAGA+AGG 0.507964 4_3:+6048670 Msa0626460:CDS
ATAGAAGCATGAGAGAAAAT+GGG 0.517079 4_3:-6052746 None:intergenic
TCCTCAGAGATGGTGTAAAA+GGG 0.521024 4_3:-6049061 None:intergenic
AGTGGAAGAAACCTTGATGT+TGG 0.521670 4_3:-6050273 None:intergenic
TAGACTTGATAATGTGGCCC+AGG 0.522945 4_3:-6052177 None:intergenic
GCCACATCAGCACAAGATGC+AGG 0.523769 4_3:-6050407 None:intergenic
TTGATGTTACTGTCATCAAC+CGG 0.524042 4_3:+6050135 Msa0626460:CDS
AGGCCTGCGATTCTTGCCGA+TGG 0.526847 4_3:+6049148 Msa0626460:CDS
TGTTATGATGCTTAAGAAGG+AGG 0.528121 4_3:+6048673 Msa0626460:CDS
TGTTTGGAGTTAGCAACTAT+GGG 0.530203 4_3:+6050182 Msa0626460:CDS
AGTCTCAAGAGCAGCACTCT+GGG 0.531103 4_3:-6049182 None:intergenic
ACCCTCTCCATCCTCAGAGA+TGG 0.532455 4_3:-6049071 None:intergenic
TACAAATGTTGCGTCTGCTA+TGG 0.534308 4_3:+6048835 Msa0626460:CDS
TCTCTTTCGGAGGTTGAGAG+TGG 0.534403 4_3:+6049004 Msa0626460:CDS
GGCAGCTACAGCTTCAAGCT+TGG 0.535888 4_3:+6052810 Msa0626460:three_prime_UTR
CACAAGGGTAGGCGGTGACA+TGG 0.536144 4_3:-6049206 None:intergenic
ATTGATAGGATTATTGATTG+GGG 0.538341 4_3:+6048248 Msa0626460:CDS
TACGGTATTGCAAGATGAGA+GGG 0.541044 4_3:+6052150 Msa0626460:CDS
GACGATCTTAAACGTGCCAC+TGG 0.541667 4_3:+6049993 Msa0626460:CDS
GAGGTCATCAGGCTGTGCAT+TGG 0.542020 4_3:-6049614 None:intergenic
CATCGCAAGTGAGGACGTAA+CGG 0.542360 4_3:-6047794 None:intergenic
ATGTGGCCTTTAGAACTATG+TGG 0.543399 4_3:+6050423 Msa0626460:CDS
TCTGTTTATAAGCTTCCTCA+AGG 0.549635 4_3:+6048086 Msa0626460:CDS
ACATATGCTTCAGCATAGAC+AGG 0.550275 4_3:-6050086 None:intergenic
GGGTTTGTTCTTGTGCTCTG+TGG 0.551774 4_3:+6048960 Msa0626460:CDS
ACAGATCAAGGCCAACATCA+AGG 0.551932 4_3:+6050262 Msa0626460:CDS
TGAGCTCGAAGATGAGGTGC+AGG 0.552537 4_3:+6049971 Msa0626460:CDS
TGATAGGATTATTGATTGGG+GGG 0.552618 4_3:+6048250 Msa0626460:CDS
AACCTTCAACCTTTCAACAA+TGG 0.553864 4_3:+6047599 Msa0626460:exon
TGAGATAAGGAAGATATGGC+TGG 0.554553 4_3:+6049507 Msa0626460:CDS
TGTTTATAAGCTTCCTCAAG+GGG 0.557926 4_3:+6048088 Msa0626460:CDS
ACACCGCGAATAAATTCGTT+CGG 0.559084 4_3:-6047939 None:intergenic
CTCAAAAGTTGAAGTTAACA+AGG 0.559317 4_3:+6049351 Msa0626460:CDS
GTATAGGCAGATGTTGGTGC+AGG 0.560283 4_3:+6048736 Msa0626460:CDS
GGCCTGCGATTCTTGCCGAT+GGG 0.560801 4_3:+6049149 Msa0626460:CDS
ATGGTCTCAATGCTGCAGCT+TGG 0.561190 4_3:+6049397 Msa0626460:CDS
AGATATGGCTGGAATCCTGC+AGG 0.561257 4_3:+6049518 Msa0626460:CDS
TCACCGAACGAATTTATTCG+CGG 0.565447 4_3:+6047936 Msa0626460:CDS
ACAGCGTTTCGTCTCACGAA+AGG 0.565951 4_3:-6048050 None:intergenic
CTGTTTATAAGCTTCCTCAA+GGG 0.566708 4_3:+6048087 Msa0626460:CDS
ACAACAGTACTCGCCACCTC+CGG 0.567962 4_3:-6048785 None:intergenic
ATGATTTCTCCATTGTTGAA+AGG 0.569191 4_3:-6047608 None:intergenic
TTATCACTTGAAGAGCAGAA+AGG 0.572845 4_3:+6049645 Msa0626460:CDS
TGAGTTTGAGTGGGAAAACA+AGG 0.573213 4_3:+6050448 Msa0626460:CDS
GGAATAATAAGGGAGAGAAA+GGG 0.575016 4_3:+6048318 Msa0626460:CDS
TTCGGGTGATTTCTTCCTTG+GGG 0.575242 4_3:+6049273 Msa0626460:CDS
GAATCATTATCAATTGGATG+TGG 0.584531 4_3:-6049436 None:intergenic
GTATTGTTTGTCTCTTTCGG+AGG 0.585959 4_3:+6048994 Msa0626460:CDS
CACCATCTCTGAGGATGGAG+AGG 0.586391 4_3:+6049069 Msa0626460:CDS
TATTTGTAGACTTGATAATG+TGG 0.587171 4_3:-6052183 None:intergenic
CAAGATGAGAGGGAGTTCCT+GGG 0.587875 4_3:+6052160 Msa0626460:CDS
CGGTGTGATCATCGCAAGTG+AGG 0.588315 4_3:-6047803 None:intergenic
CTCATCGTCCATTTCGACAA+AGG 0.590318 4_3:+6047636 Msa0626460:CDS
GTAATACTGGTGATGAGATA+AGG 0.591054 4_3:+6049494 Msa0626460:CDS
CCTCATCTTCGAGCTCAAGT+TGG 0.591377 4_3:-6049965 None:intergenic
CAGAATAAGAAGTAAAACCC+AGG 0.591954 4_3:+6052653 Msa0626460:CDS
TCAAGCAACTGCTCCCCTTG+AGG 0.592174 4_3:-6048101 None:intergenic
AGCAGCACTCTGGGTAGCAT+AGG 0.593369 4_3:-6049173 None:intergenic
GCATTATTATCTAAAGACAT+AGG 0.599663 4_3:-6053061 None:intergenic
GATAAAATCGAAGGAATCAA+CGG 0.600291 4_3:-6048008 None:intergenic
AGTGAGGACGTAACGGATGA+CGG 0.601311 4_3:-6047787 None:intergenic
GCAGCCGCTTTAATCGCGGT+CGG 0.602852 4_3:-6048434 None:intergenic
GCTGTTGTTTATGAATGTGC+TGG 0.603920 4_3:+6048386 Msa0626460:CDS
TGCACCGACCGCGATTAAAG+CGG 0.605018 4_3:+6048430 Msa0626460:CDS
TGGGGAGTATAGGCAGATGT+TGG 0.605111 4_3:+6048730 Msa0626460:CDS
AAGACAGAGATCCCTGCACA+AGG 0.605670 4_3:-6049222 None:intergenic
GACCGAGGAGATTAAAGCAA+AGG 0.607890 4_3:+6049582 Msa0626460:CDS
TCCAGATTCGATAAAATCGA+AGG 0.607979 4_3:-6048017 None:intergenic
TGTGGCCTTTAGAACTATGT+GGG 0.608107 4_3:+6050424 Msa0626460:CDS
TACACAGCAATCTAATGCAA+AGG 0.609288 4_3:-6049474 None:intergenic
AGACAGAGATCCCTGCACAA+GGG 0.610395 4_3:-6049221 None:intergenic
GAATATAACTCCAGTTTCAG+TGG 0.612897 4_3:-6050291 None:intergenic
ATAACCGCTCAATTTACCAT+CGG 0.613015 4_3:-6052628 None:intergenic
TCACCGCCTACCCTTGTGCA+GGG 0.613107 4_3:+6049211 Msa0626460:CDS
AGAGATCCCTGCACAAGGGT+AGG 0.614667 4_3:-6049217 None:intergenic
CCAACTTGAGCTCGAAGATG+AGG 0.614861 4_3:+6049965 Msa0626460:CDS
AGAATAAGAAGTAAAACCCA+GGG 0.615034 4_3:+6052654 Msa0626460:CDS
TTGATAGGATTATTGATTGG+GGG 0.615618 4_3:+6048249 Msa0626460:CDS
AAAATCACTTTGAAGCAGAA+GGG 0.616042 4_3:+6052699 Msa0626460:CDS
TAGGAGTCGAAAGTGCCCTA+AGG 0.616121 4_3:-6048580 None:intergenic
TAAGCAGCGCCGTGAGACCG+AGG 0.616463 4_3:+6049567 Msa0626460:CDS
TCTGCATTGGAAGGTGAGTG+TGG 0.618873 4_3:+6052528 Msa0626460:CDS
TCGACTTAACGAGCTTAAGA+GGG 0.619301 4_3:+6048520 Msa0626460:CDS
AAGACTCAGAGCAATTCCCT+GGG 0.620234 4_3:-6052670 None:intergenic
ATACGGTATTGCAAGATGAG+AGG 0.623355 4_3:+6052149 Msa0626460:CDS
CTATGTGGGCTGAGTTTGAG+TGG 0.625334 4_3:+6050438 Msa0626460:CDS
TGCGTGTTTCTATCATCACT+AGG 0.626366 4_3:+6048903 Msa0626460:CDS
CTGGGTAGCATAGGTCCCAT+CGG 0.628553 4_3:-6049164 None:intergenic
TGTTGCGTCTGCTATGGATG+TGG 0.631879 4_3:+6048841 Msa0626460:CDS
CTTTGTCGAAATGGACGATG+AGG 0.633592 4_3:-6047635 None:intergenic
GGTTGTTAAGACGCAGAGCG+GGG 0.634964 4_3:+6048694 Msa0626460:CDS
ATCCTTTGTAAACTCTCCAG+TGG 0.635004 4_3:-6050009 None:intergenic
GGGAATTGCTCTGAGTCTTG+GGG 0.635580 4_3:+6052674 Msa0626460:CDS
TCAACTTGTGTAGTTTCGGG+TGG 0.635669 4_3:+6052789 Msa0626460:three_prime_UTR
ATTCGCAGCCGCTTTAATCG+CGG 0.638162 4_3:-6048438 None:intergenic
ATGACGGTGATGAAGAGTTG+AGG 0.642418 4_3:-6047771 None:intergenic
GGTTGATGACAGTAACATCA+AGG 0.643491 4_3:-6050133 None:intergenic
GAAATCAAAGAATCTCTCGA+AGG 0.643937 4_3:+6047678 Msa0626460:CDS
ACCATCTCTGAGGATGGAGA+GGG 0.647823 4_3:+6049070 Msa0626460:CDS
AGAGGGTCAGGAGACATCAA+AGG 0.653712 4_3:+6049087 Msa0626460:CDS
TTGTGCTATTAAGTTTCCGG+AGG 0.654288 4_3:+6048769 Msa0626460:CDS
GGTGATGAAGAGTTGAGGAA+TGG 0.658642 4_3:-6047766 None:intergenic
AGCATTGAGAAGCAATCCGA+TGG 0.659389 4_3:+6052612 Msa0626460:CDS
TACTGTCATCAACCGGACCA+AGG 0.661558 4_3:+6050142 Msa0626460:CDS
CGGGGAGCATGAGAAGAATG+GGG 0.661763 4_3:+6048712 Msa0626460:CDS
TGATTTCGAGGTAAAGAAGG+AGG 0.662780 4_3:-6047836 None:intergenic
CGACCACTGTGTCTTCTAGG+AGG 0.662950 4_3:+6049128 Msa0626460:CDS
GATCCCTGCACAAGGGTAGG+CGG 0.664720 4_3:-6049214 None:intergenic
CATTGAGACCATGATCAACA+AGG 0.665953 4_3:-6049386 None:intergenic
GCGTCCACAAAACTACACTC+TGG 0.667477 4_3:+6050223 Msa0626460:CDS
TGATAATGATTCTCATGACA+GGG 0.668331 4_3:+6049447 Msa0626460:CDS
TACATGCGACAACTGCCCCA+AGG 0.668408 4_3:-6049288 None:intergenic
CAATCCGATGGTAAATTGAG+CGG 0.668476 4_3:+6052624 Msa0626460:CDS
GAGGTTGTTAAGACGCAGAG+CGG 0.671714 4_3:+6048692 Msa0626460:CDS
TCAAGTGATAAAAGTCGATG+AGG 0.671720 4_3:-6049633 None:intergenic
TATGTGGGCTGAGTTTGAGT+GGG 0.690862 4_3:+6050439 Msa0626460:CDS
ACCGATAAAACCGATTCTCG+CGG 0.697764 4_3:+6047858 Msa0626460:CDS
GAGCTTTGTGAAGATGCTCG+CGG 0.718610 4_3:+6049543 Msa0626460:CDS
TGCCACTGGAGAGTTTACAA+AGG 0.721810 4_3:+6050007 Msa0626460:CDS
AGCACATTCATAAACAACAG+CGG 0.738106 4_3:-6048384 None:intergenic
AGGCCTCCTAGAAGACACAG+TGG 0.786866 4_3:-6049131 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTAAAATGGAAAAAT+GGG - chr4_3:6050578-6050597 None:intergenic 10.0%
!! ATAAAAGTTGAAAAAGATTA+TGG + chr4_3:6050518-6050537 Msa0626460:intron 15.0%
!!! ATTTTTAAAATGGAAAAATG+GGG - chr4_3:6050577-6050596 None:intergenic 15.0%
!!! CAATTTTTAAAATGGAAAAA+TGG - chr4_3:6050579-6050598 None:intergenic 15.0%
!!! TTTTCATGCAATTTTTAAAA+TGG - chr4_3:6050587-6050606 None:intergenic 15.0%
!!! GTATTAATAATTTTTTTTCG+TGG + chr4_3:6050808-6050827 Msa0626460:intron 15.0%
!! TAGGATAAATCATATATATA+GGG - chr4_3:6051097-6051116 None:intergenic 15.0%
!! TTAGGATAAATCATATATAT+AGG - chr4_3:6051098-6051117 None:intergenic 15.0%
!!! ATAATTTTATGTTGTTAATG+CGG - chr4_3:6051516-6051535 None:intergenic 15.0%
!!! ATTATTTTCTAAGACAAATT+TGG + chr4_3:6051531-6051550 Msa0626460:intron 15.0%
!!! TTATTTTCTAAGACAAATTT+GGG + chr4_3:6051532-6051551 Msa0626460:intron 15.0%
!! TCCTAAATAAAACAAAAAAT+AGG + chr4_3:6051610-6051629 Msa0626460:intron 15.0%
!!! TCCTATTTTTTGTTTTATTT+AGG - chr4_3:6051614-6051633 None:intergenic 15.0%
!! AAAATAAAATATAGGCAATA+AGG - chr4_3:6052955-6052974 None:intergenic 15.0%
!! GTCTACATAAAATAAAATAT+AGG - chr4_3:6052963-6052982 None:intergenic 15.0%
!!! ATCTTTTTACGAATATTGAT+AGG + chr4_3:6048234-6048253 Msa0626460:CDS 20.0%
!! ATATTGATAGGATTATTGAT+TGG + chr4_3:6048246-6048265 Msa0626460:CDS 20.0%
!!! TATTGATAGGATTATTGATT+GGG + chr4_3:6048247-6048266 Msa0626460:CDS 20.0%
!! AATTGATAAAGAAAGTTTGT+AGG + chr4_3:6048297-6048316 Msa0626460:CDS 20.0%
!! AAAGTTTGTAGGAATAATAA+GGG + chr4_3:6048308-6048327 Msa0626460:CDS 20.0%
!! AAAATATAACAAATGAGAGA+AGG - chr4_3:6050488-6050507 None:intergenic 20.0%
!!! AATATAATTTTAAGAGCACA+GGG - chr4_3:6050670-6050689 None:intergenic 20.0%
!!! TATTTTCTAAGACAAATTTG+GGG + chr4_3:6051533-6051552 Msa0626460:intron 20.0%
!!! TAACATCAATTTTATGTCAT+AGG + chr4_3:6052117-6052136 Msa0626460:intron 20.0%
!! TAAAAAGAAAAACAGAATTC+TGG - chr4_3:6052295-6052314 None:intergenic 20.0%
!!! GAATTCTGTTTTTCTTTTTA+AGG + chr4_3:6052295-6052314 Msa0626460:intron 20.0%
!!! TAAATTTGAAACTAATGAGT+TGG - chr4_3:6052876-6052895 None:intergenic 20.0%
!! GTAAAGAATACAAACAAAAA+TGG - chr4_3:6052911-6052930 None:intergenic 20.0%
!!! TTTTGTTTGTATTCTTTACA+TGG + chr4_3:6052912-6052931 Msa0626460:three_prime_UTR 20.0%
!! GAGATTATGATATCAATATA+TGG - chr4_3:6052999-6053018 None:intergenic 20.0%
!! TGTTGAGAAATTTCTTGTTT+CGG + chr4_3:6048139-6048158 Msa0626460:CDS 25.0%
!! ATTGATAGGATTATTGATTG+GGG + chr4_3:6048248-6048267 Msa0626460:CDS 25.0%
! GAAAGTTTGTAGGAATAATA+AGG + chr4_3:6048307-6048326 Msa0626460:CDS 25.0%
! TTCCTTCTAATATCATGATT+AGG - chr4_3:6048602-6048621 None:intergenic 25.0%
! TCATGAGAATCATTATCAAT+TGG - chr4_3:6049445-6049464 None:intergenic 25.0%
!!! TTTGCTTCTTTTTCTAAGAA+TGG + chr4_3:6049686-6049705 Msa0626460:intron 25.0%
! TGACATTCATATTGATATCA+TGG + chr4_3:6050373-6050392 Msa0626460:CDS 25.0%
! TACTTTAGATTCATGATTCA+TGG + chr4_3:6050619-6050638 Msa0626460:intron 25.0%
! TTCATGGTAATCTCTATTAT+TGG + chr4_3:6050635-6050654 Msa0626460:intron 25.0%
! TCATGGTAATCTCTATTATT+GGG + chr4_3:6050636-6050655 Msa0626460:intron 25.0%
!!! ATATAATTTTAAGAGCACAG+GGG - chr4_3:6050669-6050688 None:intergenic 25.0%
!!! CAATATAATTTTAAGAGCAC+AGG - chr4_3:6050671-6050690 None:intergenic 25.0%
! TCATATTGAACTATTGAAGT+TGG + chr4_3:6050778-6050797 Msa0626460:intron 25.0%
!! ATCATCTTACAATTTTACCA+AGG - chr4_3:6050898-6050917 None:intergenic 25.0%
! TGTAATAACTACATGAATGA+TGG + chr4_3:6051659-6051678 Msa0626460:intron 25.0%
!!! CTCTAATTTTTTTTGCATGA+AGG + chr4_3:6051729-6051748 Msa0626460:intron 25.0%
!!! TATTTGTAGACTTGATAATG+TGG - chr4_3:6052186-6052205 None:intergenic 25.0%
! ATAAGGTTTACGCAAATTAA+AGG - chr4_3:6052235-6052254 None:intergenic 25.0%
! CCAAATTAAACAAATTGCAT+GGG - chr4_3:6052436-6052455 None:intergenic 25.0%
! ACCAAATTAAACAAATTGCA+TGG - chr4_3:6052437-6052456 None:intergenic 25.0%
! CCAAATTAAACAAATTGCAT+GGG - chr4_3:6052436-6052455 None:intergenic 25.0%
! ACCAAATTAAACAAATTGCA+TGG - chr4_3:6052437-6052456 None:intergenic 25.0%
! CCAAATTAAACAAATTGCAT+GGG - chr4_3:6052436-6052455 None:intergenic 25.0%
! ACCAAATTAAACAAATTGCA+TGG - chr4_3:6052437-6052456 None:intergenic 25.0%
! AACAAAAATGGAACTTCAAA+GGG - chr4_3:6052899-6052918 None:intergenic 25.0%
! AAACAAAAATGGAACTTCAA+AGG - chr4_3:6052900-6052919 None:intergenic 25.0%
!! ATTTTATGTAGACATGCAAT+TGG + chr4_3:6052970-6052989 Msa0626460:three_prime_UTR 25.0%
!! TTGACAATGACTATTTGTTA+TGG + chr4_3:6053025-6053044 Msa0626460:three_prime_UTR 25.0%
! GCATTATTATCTAAAGACAT+AGG - chr4_3:6053064-6053083 None:intergenic 25.0%
ATCTGAAGAAATTGAGAGAT+CGG - chr4_3:6047565-6047584 None:intergenic 30.0%
ATGATTTCTCCATTGTTGAA+AGG - chr4_3:6047611-6047630 None:intergenic 30.0%
! TTCGAGAGATTCTTTGATTT+CGG - chr4_3:6047679-6047698 None:intergenic 30.0%
GACAGATTAAGATCATTTCA+GGG - chr4_3:6047893-6047912 None:intergenic 30.0%
TGACAGATTAAGATCATTTC+AGG - chr4_3:6047894-6047913 None:intergenic 30.0%
GATAAAATCGAAGGAATCAA+CGG - chr4_3:6048011-6048030 None:intergenic 30.0%
AGAAATTTCTCAACAATCTC+AGG - chr4_3:6048134-6048153 None:intergenic 30.0%
! TTGATAGGATTATTGATTGG+GGG + chr4_3:6048249-6048268 Msa0626460:CDS 30.0%
! GATTATGGTTGATATGGTTA+TGG + chr4_3:6048553-6048572 Msa0626460:CDS 30.0%
CTCCTAATCATGATATTAGA+AGG + chr4_3:6048597-6048616 Msa0626460:CDS 30.0%
TACACCTAAGAATATTGATC+AGG + chr4_3:6048649-6048668 Msa0626460:CDS 30.0%
ACAACCTGATCAATATTCTT+AGG - chr4_3:6048656-6048675 None:intergenic 30.0%
! TACTTGTGCTATTAAGTTTC+CGG + chr4_3:6048766-6048785 Msa0626460:CDS 30.0%
!! CATTTGTTGATGGATTTCTT+GGG + chr4_3:6048809-6048828 Msa0626460:CDS 30.0%
TGGATACTTTCTATCAGATT+CGG + chr4_3:6048930-6048949 Msa0626460:CDS 30.0%
! TGAGTATTGTTTGTCTCTTT+CGG + chr4_3:6048991-6049010 Msa0626460:CDS 30.0%
! CTTGTTAACTTCAACTTTTG+AGG - chr4_3:6049353-6049372 None:intergenic 30.0%
CTCAAAAGTTGAAGTTAACA+AGG + chr4_3:6049351-6049370 Msa0626460:CDS 30.0%
GAATCATTATCAATTGGATG+TGG - chr4_3:6049439-6049458 None:intergenic 30.0%
!! TTGATAATGATTCTCATGAC+AGG + chr4_3:6049446-6049465 Msa0626460:CDS 30.0%
! TGATAATGATTCTCATGACA+GGG + chr4_3:6049447-6049466 Msa0626460:CDS 30.0%
ATTAGATTGCTGTGTAATAC+TGG + chr4_3:6049481-6049500 Msa0626460:CDS 30.0%
CATGCAAAACAAAAACTTCA+AGG - chr4_3:6049740-6049759 None:intergenic 30.0%
! AAGTTTAGTGTTTTGTCAGT+TGG + chr4_3:6049846-6049865 Msa0626460:intron 30.0%
! AGTTTAGTGTTTTGTCAGTT+GGG + chr4_3:6049847-6049866 Msa0626460:intron 30.0%
AACTCTCCAGAATTTATGTT+TGG + chr4_3:6050166-6050185 Msa0626460:CDS 30.0%
CTAACTCCAAACATAAATTC+TGG - chr4_3:6050175-6050194 None:intergenic 30.0%
ACTGAAACTGGAGTTATATT+CGG + chr4_3:6050293-6050312 Msa0626460:CDS 30.0%
ATATAACAAATGAGAGAAGG+AGG - chr4_3:6050485-6050504 None:intergenic 30.0%
TTGCATGAAAAACAACTTCT+AGG + chr4_3:6050596-6050615 Msa0626460:intron 30.0%
!! TATAATTTTAAGAGCACAGG+GGG - chr4_3:6050668-6050687 None:intergenic 30.0%
! CTTCGATGATGGTATATTAA+TGG + chr4_3:6050730-6050749 Msa0626460:intron 30.0%
! GATGATGGTATATTAATGGT+TGG + chr4_3:6050734-6050753 Msa0626460:intron 30.0%
! ATCTTACAATTTTACCAAGG+TGG - chr4_3:6050895-6050914 None:intergenic 30.0%
CAGCTTATACATATACCATT+AGG - chr4_3:6050965-6050984 None:intergenic 30.0%
!!! GATTCAGCATGTTACTTTTT+GGG - chr4_3:6051026-6051045 None:intergenic 30.0%
!!! AGATTCAGCATGTTACTTTT+TGG - chr4_3:6051027-6051046 None:intergenic 30.0%
CATTATTGTTATCGTCTCTT+AGG - chr4_3:6051116-6051135 None:intergenic 30.0%
AAGAGACGATAACAATAATG+AGG + chr4_3:6051116-6051135 Msa0626460:intron 30.0%
! TTTATACACTGATGCTTTTC+TGG + chr4_3:6051397-6051416 Msa0626460:intron 30.0%
ACTGTTTCAATGACTCAATT+TGG + chr4_3:6051778-6051797 Msa0626460:intron 30.0%
! AGCTGTGATTCATTCATTTT+TGG - chr4_3:6051871-6051890 None:intergenic 30.0%
! ATTTTTGTAGTTTCCTGCTT+AGG + chr4_3:6051916-6051935 Msa0626460:intron 30.0%
! TTTTTGTAGTTTCCTGCTTA+GGG + chr4_3:6051917-6051936 Msa0626460:intron 30.0%
GAGTAAACTGATTATAGCTA+AGG - chr4_3:6051943-6051962 None:intergenic 30.0%
AATGTATGTAGTTGTAGTAC+AGG + chr4_3:6051990-6052009 Msa0626460:intron 30.0%
! CCCATGCAATTTGTTTAATT+TGG + chr4_3:6052433-6052452 Msa0626460:intron 30.0%
! CCCATGCAATTTGTTTAATT+TGG + chr4_3:6052433-6052452 Msa0626460:intron 30.0%
! CCCATGCAATTTGTTTAATT+TGG + chr4_3:6052433-6052452 Msa0626460:intron 30.0%
!!! TGTATGCAAAGAGTGTTTTT+GGG + chr4_3:6052568-6052587 Msa0626460:CDS 30.0%
AGAATAAGAAGTAAAACCCA+GGG + chr4_3:6052654-6052673 Msa0626460:CDS 30.0%
!! TAAAATCACTTTGAAGCAGA+AGG + chr4_3:6052698-6052717 Msa0626460:CDS 30.0%
!! AAAATCACTTTGAAGCAGAA+GGG + chr4_3:6052699-6052718 Msa0626460:CDS 30.0%
! ATAGAAGCATGAGAGAAAAT+GGG - chr4_3:6052749-6052768 None:intergenic 30.0%
! TATAGAAGCATGAGAGAAAA+TGG - chr4_3:6052750-6052769 None:intergenic 30.0%
CTTATCAACTTGTGTAGTTT+CGG + chr4_3:6052785-6052804 Msa0626460:three_prime_UTR 30.0%
TTATCAACTTGTGTAGTTTC+GGG + chr4_3:6052786-6052805 Msa0626460:three_prime_UTR 30.0%
! CTTCAAATTCTTGTGACTTT+TGG + chr4_3:6052844-6052863 Msa0626460:three_prime_UTR 30.0%
! GTGTGAGAAGAAGATGATTT+TGG - chr4_3:6047483-6047502 None:intergenic 35.0%
TCTCACTGTGATGTGATTAT+GGG - chr4_3:6047511-6047530 None:intergenic 35.0%
ATCTCACTGTGATGTGATTA+TGG - chr4_3:6047512-6047531 None:intergenic 35.0%
AGAAATTGAGAGATCGGTTA+TGG - chr4_3:6047559-6047578 None:intergenic 35.0%
AACCTTCAACCTTTCAACAA+TGG + chr4_3:6047599-6047618 Msa0626460:exon 35.0%
GAAATCAAAGAATCTCTCGA+AGG + chr4_3:6047678-6047697 Msa0626460:CDS 35.0%
! AAGAAGGAGGAGTTTTTGAA+CGG - chr4_3:6047826-6047845 None:intergenic 35.0%
! TCCTTCGATTTTATCGAATC+TGG + chr4_3:6048016-6048035 Msa0626460:CDS 35.0%
TCCAGATTCGATAAAATCGA+AGG - chr4_3:6048020-6048039 None:intergenic 35.0%
TCTGTTTATAAGCTTCCTCA+AGG + chr4_3:6048086-6048105 Msa0626460:CDS 35.0%
CTGTTTATAAGCTTCCTCAA+GGG + chr4_3:6048087-6048106 Msa0626460:CDS 35.0%
TGTTTATAAGCTTCCTCAAG+GGG + chr4_3:6048088-6048107 Msa0626460:CDS 35.0%
! TGATAGGATTATTGATTGGG+GGG + chr4_3:6048250-6048269 Msa0626460:CDS 35.0%
! ACAGTTACAAATGGTGGTTT+TGG + chr4_3:6048274-6048293 Msa0626460:CDS 35.0%
AGGAATAATAAGGGAGAGAA+AGG + chr4_3:6048317-6048336 Msa0626460:CDS 35.0%
GGAATAATAAGGGAGAGAAA+GGG + chr4_3:6048318-6048337 Msa0626460:CDS 35.0%
AGCACATTCATAAACAACAG+CGG - chr4_3:6048387-6048406 None:intergenic 35.0%
! TAGGGAGATTATGGTTGATA+TGG + chr4_3:6048547-6048566 Msa0626460:CDS 35.0%
ATATGGTTATGGATGTCCTT+AGG + chr4_3:6048564-6048583 Msa0626460:CDS 35.0%
TATGGTTATGGATGTCCTTA+GGG + chr4_3:6048565-6048584 Msa0626460:CDS 35.0%
GGTTGTTATGATGCTTAAGA+AGG + chr4_3:6048670-6048689 Msa0626460:CDS 35.0%
TGTTATGATGCTTAAGAAGG+AGG + chr4_3:6048673-6048692 Msa0626460:CDS 35.0%
! TACTGTTGTGCATTTGTTGA+TGG + chr4_3:6048799-6048818 Msa0626460:CDS 35.0%
!! GCATTTGTTGATGGATTTCT+TGG + chr4_3:6048808-6048827 Msa0626460:CDS 35.0%
! TTCTATCATCACTAGGCTTT+TGG + chr4_3:6048910-6048929 Msa0626460:CDS 35.0%
GGATACTTTCTATCAGATTC+GGG + chr4_3:6048931-6048950 Msa0626460:CDS 35.0%
CTTGAGATCTCTGATTCTTT+CGG + chr4_3:6049255-6049274 Msa0626460:CDS 35.0%
TTGAGATCTCTGATTCTTTC+GGG + chr4_3:6049256-6049275 Msa0626460:CDS 35.0%
CACTGACAAAGCTTATCTTA+AGG + chr4_3:6049311-6049330 Msa0626460:CDS 35.0%
GACAAAGCTTATCTTAAGGT+TGG + chr4_3:6049315-6049334 Msa0626460:CDS 35.0%
TACACAGCAATCTAATGCAA+AGG - chr4_3:6049477-6049496 None:intergenic 35.0%
! GTAATACTGGTGATGAGATA+AGG + chr4_3:6049494-6049513 Msa0626460:CDS 35.0%
GTGATGAGATAAGGAAGATA+TGG + chr4_3:6049503-6049522 Msa0626460:CDS 35.0%
TCAAGTGATAAAAGTCGATG+AGG - chr4_3:6049636-6049655 None:intergenic 35.0%
TTATCACTTGAAGAGCAGAA+AGG + chr4_3:6049645-6049664 Msa0626460:CDS 35.0%
! TACCTATATTTGTCGAGTTG+TGG + chr4_3:6049801-6049820 Msa0626460:intron 35.0%
TACCACAACTCGACAAATAT+AGG - chr4_3:6049806-6049825 None:intergenic 35.0%
! GTTTAGTGTTTTGTCAGTTG+GGG + chr4_3:6049848-6049867 Msa0626460:intron 35.0%
! TTTAGTGTTTTGTCAGTTGG+GGG + chr4_3:6049849-6049868 Msa0626460:intron 35.0%
TAAGTGTACTGAGCACATAA+CGG - chr4_3:6049891-6049910 None:intergenic 35.0%
! TCAATCTGTCTATGCTTTTC+AGG + chr4_3:6049935-6049954 Msa0626460:CDS 35.0%
! CAATCTGTCTATGCTTTTCA+GGG + chr4_3:6049936-6049955 Msa0626460:CDS 35.0%
TTGATGTTACTGTCATCAAC+CGG + chr4_3:6050135-6050154 Msa0626460:CDS 35.0%
! TAAATTCTGGAGAGTTTCCT+TGG - chr4_3:6050162-6050181 None:intergenic 35.0%
! ATGTTTGGAGTTAGCAACTA+TGG + chr4_3:6050181-6050200 Msa0626460:CDS 35.0%
! TGTTTGGAGTTAGCAACTAT+GGG + chr4_3:6050182-6050201 Msa0626460:CDS 35.0%
TTGATCTGTTTGCTTGATTC+TGG - chr4_3:6050251-6050270 None:intergenic 35.0%
AGAATCAAGCAAACAGATCA+AGG + chr4_3:6050250-6050269 Msa0626460:CDS 35.0%
GAATATAACTCCAGTTTCAG+TGG - chr4_3:6050294-6050313 None:intergenic 35.0%
GGATCGAAATAAGCAGTAAA+AGG - chr4_3:6050549-6050568 None:intergenic 35.0%
TGCAATATATGCTTCGATGA+TGG + chr4_3:6050719-6050738 Msa0626460:intron 35.0%
ATACCATTAGGCTACTACTA+GGG - chr4_3:6050953-6050972 None:intergenic 35.0%
TATACCATTAGGCTACTACT+AGG - chr4_3:6050954-6050973 None:intergenic 35.0%
TGTTTGCATTTCACTGAGTT+AGG + chr4_3:6051211-6051230 Msa0626460:intron 35.0%
GAGTGATATGCTGATAGATA+TGG + chr4_3:6051357-6051376 Msa0626460:intron 35.0%
ACTTCATGTGAACTCATTAG+AGG - chr4_3:6051698-6051717 None:intergenic 35.0%
GCATGAAGGAAGCTATAAAT+AGG + chr4_3:6051743-6051762 Msa0626460:intron 35.0%
ATGTAGTTGTAGTACAGGTA+TGG + chr4_3:6051995-6052014 Msa0626460:intron 35.0%
ACAATCATGCTTCTAGATGA+TGG - chr4_3:6052032-6052051 None:intergenic 35.0%
GTCATAGGTTGCTGTAAATA+CGG + chr4_3:6052132-6052151 Msa0626460:intron 35.0%
ACGCAAATTAAAGGAACTCA+CGG - chr4_3:6052226-6052245 None:intergenic 35.0%
ACGCAACAATAACAGTCATA+AGG - chr4_3:6052252-6052271 None:intergenic 35.0%
AATTCTGGTAGTAGATAGTC+AGG - chr4_3:6052280-6052299 None:intergenic 35.0%
TTATGGGCACTTCATTGTTT+AGG - chr4_3:6052348-6052367 None:intergenic 35.0%
TGAATCCCACAATCAGTTAT+GGG - chr4_3:6052364-6052383 None:intergenic 35.0%
ATGAATCCCACAATCAGTTA+TGG - chr4_3:6052365-6052384 None:intergenic 35.0%
!!! CTGTATGCAAAGAGTGTTTT+TGG + chr4_3:6052567-6052586 Msa0626460:CDS 35.0%
!!! GTATGCAAAGAGTGTTTTTG+GGG + chr4_3:6052569-6052588 Msa0626460:CDS 35.0%
ATAACCGCTCAATTTACCAT+CGG - chr4_3:6052631-6052650 None:intergenic 35.0%
CAGAATAAGAAGTAAAACCC+AGG + chr4_3:6052653-6052672 Msa0626460:CDS 35.0%
! CAAATTCTTGTGACTTTTGG+TGG + chr4_3:6052847-6052866 Msa0626460:three_prime_UTR 35.0%
!! CAATGACTATTTGTTATGGC+TGG + chr4_3:6053029-6053048 Msa0626460:three_prime_UTR 35.0%
AAGGTTGAAGGTTTCAGATC+TGG - chr4_3:6047592-6047611 None:intergenic 40.0%
CTCCATTGTTGAAAGGTTGA+AGG - chr4_3:6047604-6047623 None:intergenic 40.0%
GCAATCATGCTTCTCCTTAA+CGG + chr4_3:6047738-6047757 Msa0626460:CDS 40.0%
TGATTTCGAGGTAAAGAAGG+AGG - chr4_3:6047839-6047858 None:intergenic 40.0%
TCACCGAACGAATTTATTCG+CGG + chr4_3:6047936-6047955 Msa0626460:CDS 40.0%
ACACCGCGAATAAATTCGTT+CGG - chr4_3:6047942-6047961 None:intergenic 40.0%
! GCTGTTGTTTATGAATGTGC+TGG + chr4_3:6048386-6048405 Msa0626460:CDS 40.0%
! ATCGACTTAACGAGCTTAAG+AGG + chr4_3:6048519-6048538 Msa0626460:CDS 40.0%
TCGACTTAACGAGCTTAAGA+GGG + chr4_3:6048520-6048539 Msa0626460:CDS 40.0%
ACGAGCTTAAGAGGGATAAT+AGG + chr4_3:6048528-6048547 Msa0626460:CDS 40.0%
CGAGCTTAAGAGGGATAATA+GGG + chr4_3:6048529-6048548 Msa0626460:CDS 40.0%
GAGGGATAATAGGGAGATTA+TGG + chr4_3:6048538-6048557 Msa0626460:CDS 40.0%
! ATGAGAAGAATGGGGAGTAT+AGG + chr4_3:6048720-6048739 Msa0626460:CDS 40.0%
! TTGTGCTATTAAGTTTCCGG+AGG + chr4_3:6048769-6048788 Msa0626460:CDS 40.0%
TACAAATGTTGCGTCTGCTA+TGG + chr4_3:6048835-6048854 Msa0626460:CDS 40.0%
TGATAGAAACACGCAGCTTA+GGG - chr4_3:6048898-6048917 None:intergenic 40.0%
ATGATAGAAACACGCAGCTT+AGG - chr4_3:6048899-6048918 None:intergenic 40.0%
! TGCGTGTTTCTATCATCACT+AGG + chr4_3:6048903-6048922 Msa0626460:CDS 40.0%
! TCTTGTGCTCTGTGGATTAT+TGG + chr4_3:6048968-6048987 Msa0626460:CDS 40.0%
GTATTGTTTGTCTCTTTCGG+AGG + chr4_3:6048994-6049013 Msa0626460:CDS 40.0%
GCAACTATTAAGCAGTGTCT+TGG + chr4_3:6049031-6049050 Msa0626460:CDS 40.0%
TCCTCAGAGATGGTGTAAAA+GGG - chr4_3:6049064-6049083 None:intergenic 40.0%
ATCCTCAGAGATGGTGTAAA+AGG - chr4_3:6049065-6049084 None:intergenic 40.0%
!! TTTTACACCATCTCTGAGGA+TGG + chr4_3:6049064-6049083 Msa0626460:CDS 40.0%
AGGGATCTCTGTCTTCTATT+GGG + chr4_3:6049230-6049249 Msa0626460:CDS 40.0%
! TTTCGGGTGATTTCTTCCTT+GGG + chr4_3:6049272-6049291 Msa0626460:CDS 40.0%
GCTTATCTTAAGGTTGGAAG+AGG + chr4_3:6049321-6049340 Msa0626460:CDS 40.0%
TTCACAGTCCTTGTTGATCA+TGG + chr4_3:6049378-6049397 Msa0626460:CDS 40.0%
CATTGAGACCATGATCAACA+AGG - chr4_3:6049389-6049408 None:intergenic 40.0%
TGAGATAAGGAAGATATGGC+TGG + chr4_3:6049507-6049526 Msa0626460:CDS 40.0%
TGCCTTTGCTTTAATCTCCT+CGG - chr4_3:6049587-6049606 None:intergenic 40.0%
TAAAAGTCGATGAGGTCATC+AGG - chr4_3:6049628-6049647 None:intergenic 40.0%
! TGAAGAGCAGAAAGGTATGA+TGG + chr4_3:6049653-6049672 Msa0626460:intron 40.0%
ATCCTTTGTAAACTCTCCAG+TGG - chr4_3:6050012-6050031 None:intergenic 40.0%
ACATATGCTTCAGCATAGAC+AGG - chr4_3:6050089-6050108 None:intergenic 40.0%
!! GGTTGATGACAGTAACATCA+AGG - chr4_3:6050136-6050155 None:intergenic 40.0%
AGTGGAAGAAACCTTGATGT+TGG - chr4_3:6050276-6050295 None:intergenic 40.0%
AAGGTTTCTTCCACTGAAAC+TGG + chr4_3:6050281-6050300 Msa0626460:CDS 40.0%
!! ATGTGGCCTTTAGAACTATG+TGG + chr4_3:6050423-6050442 Msa0626460:CDS 40.0%
!! TGTGGCCTTTAGAACTATGT+GGG + chr4_3:6050424-6050443 Msa0626460:CDS 40.0%
TGAGTTTGAGTGGGAAAACA+AGG + chr4_3:6050448-6050467 Msa0626460:CDS 40.0%
TTACTGCTTATTTCGATCCC+TGG + chr4_3:6050550-6050569 Msa0626460:intron 40.0%
TACTGCTTATTTCGATCCCT+GGG + chr4_3:6050551-6050570 Msa0626460:intron 40.0%
ATTGCAAACAGAACGATGTC+AGG - chr4_3:6050705-6050724 None:intergenic 40.0%
TACCATTAGGCTACTACTAG+GGG - chr4_3:6050952-6050971 None:intergenic 40.0%
!!! TACTTTTTGGGTGCAATGAC+AGG - chr4_3:6051014-6051033 None:intergenic 40.0%
ATAGGGAACACACAACACAA+AGG - chr4_3:6051080-6051099 None:intergenic 40.0%
AAATAGAGACGTAGAGGAGT+AGG - chr4_3:6051161-6051180 None:intergenic 40.0%
TACTCCTCTACGTCTCTATT+TGG + chr4_3:6051160-6051179 Msa0626460:intron 40.0%
ACTCCTCTACGTCTCTATTT+GGG + chr4_3:6051161-6051180 Msa0626460:intron 40.0%
TGCCTGTAGCTATTCAAAGT+GGG - chr4_3:6051315-6051334 None:intergenic 40.0%
ATGCCTGTAGCTATTCAAAG+TGG - chr4_3:6051316-6051335 None:intergenic 40.0%
CAGCATATCACTCATACTGT+GGG - chr4_3:6051350-6051369 None:intergenic 40.0%
TCAGCATATCACTCATACTG+TGG - chr4_3:6051351-6051370 None:intergenic 40.0%
! TGAATGATGGAAATCACCCT+AGG + chr4_3:6051672-6051691 Msa0626460:intron 40.0%
GAAGGAAGCTATAAATAGGC+AGG + chr4_3:6051747-6051766 Msa0626460:intron 40.0%
TCAATTTGGTCCTGTCTTGA+TGG + chr4_3:6051792-6051811 Msa0626460:intron 40.0%
CAATTTGGTCCTGTCTTGAT+GGG + chr4_3:6051793-6051812 Msa0626460:intron 40.0%
! GATTCTGAGAAAGCTACAGA+TGG - chr4_3:6051831-6051850 None:intergenic 40.0%
! CTTCTAGATGATGGCCAATT+TGG - chr4_3:6052023-6052042 None:intergenic 40.0%
! TCTAGAAGCATGATTGTGAC+AGG + chr4_3:6052035-6052054 Msa0626460:intron 40.0%
! CTAGAAGCATGATTGTGACA+GGG + chr4_3:6052036-6052055 Msa0626460:intron 40.0%
ATACGGTATTGCAAGATGAG+AGG + chr4_3:6052149-6052168 Msa0626460:CDS 40.0%
TACGGTATTGCAAGATGAGA+GGG + chr4_3:6052150-6052169 Msa0626460:CDS 40.0%
CAAATTAAAGGAACTCACGG+TGG - chr4_3:6052223-6052242 None:intergenic 40.0%
AAGTGCCCATAACTGATTGT+GGG + chr4_3:6052356-6052375 Msa0626460:intron 40.0%
CAATCCGATGGTAAATTGAG+CGG + chr4_3:6052624-6052643 Msa0626460:CDS 40.0%
CTTTGTCGAAATGGACGATG+AGG - chr4_3:6047638-6047657 None:intergenic 45.0%
CTCATCGTCCATTTCGACAA+AGG + chr4_3:6047636-6047655 Msa0626460:CDS 45.0%
CTGGTGTTCCTTTGTCGAAA+TGG - chr4_3:6047647-6047666 None:intergenic 45.0%
GGTGATGAAGAGTTGAGGAA+TGG - chr4_3:6047769-6047788 None:intergenic 45.0%
ATGACGGTGATGAAGAGTTG+AGG - chr4_3:6047774-6047793 None:intergenic 45.0%
CGGTGATTTCGAGGTAAAGA+AGG - chr4_3:6047842-6047861 None:intergenic 45.0%
!! CGGTTTTATCGGTGATTTCG+AGG - chr4_3:6047851-6047870 None:intergenic 45.0%
! ACCGATAAAACCGATTCTCG+CGG + chr4_3:6047858-6047877 Msa0626460:CDS 45.0%
!! ACCGCGAGAATCGGTTTTAT+CGG - chr4_3:6047862-6047881 None:intergenic 45.0%
GAGAACTTTACCGCGAGAAT+CGG - chr4_3:6047871-6047890 None:intergenic 45.0%
AGCAAGATGCTTCGAGTAAG+AGG + chr4_3:6048162-6048181 Msa0626460:CDS 45.0%
TTGGGGGGAACAGTTACAAA+TGG + chr4_3:6048265-6048284 Msa0626460:CDS 45.0%
TGCTATTAAGTTTCCGGAGG+TGG + chr4_3:6048772-6048791 Msa0626460:CDS 45.0%
!! TGGATGTGGTTGTTTTCGTG+CGG + chr4_3:6048855-6048874 Msa0626460:CDS 45.0%
! TCCCTTTTACACCATCTCTG+AGG + chr4_3:6049060-6049079 Msa0626460:CDS 45.0%
CAGGGATCTCTGTCTTCTAT+TGG + chr4_3:6049229-6049248 Msa0626460:CDS 45.0%
! CTTTCGGGTGATTTCTTCCT+TGG + chr4_3:6049271-6049290 Msa0626460:CDS 45.0%
TTCGGGTGATTTCTTCCTTG+GGG + chr4_3:6049273-6049292 Msa0626460:CDS 45.0%
CTTTAATCTCCTCGGTCTCA+CGG - chr4_3:6049579-6049598 None:intergenic 45.0%
GACCGAGGAGATTAAAGCAA+AGG + chr4_3:6049582-6049601 Msa0626460:CDS 45.0%
GCTCAGTACACTTACTCATC+TGG + chr4_3:6049897-6049916 Msa0626460:intron 45.0%
TGCCACTGGAGAGTTTACAA+AGG + chr4_3:6050007-6050026 Msa0626460:CDS 45.0%
AATCGCATTCTTCAGCTCAC+TGG + chr4_3:6050053-6050072 Msa0626460:CDS 45.0%
ATCGCATTCTTCAGCTCACT+GGG + chr4_3:6050054-6050073 Msa0626460:CDS 45.0%
ACAGATCAAGGCCAACATCA+AGG + chr4_3:6050262-6050281 Msa0626460:CDS 45.0%
!! CTCAGCCCACATAGTTCTAA+AGG - chr4_3:6050432-6050451 None:intergenic 45.0%
! TATGTGGGCTGAGTTTGAGT+GGG + chr4_3:6050439-6050458 Msa0626460:CDS 45.0%
ACAAATGAGAGAAGGAGGAG+AGG - chr4_3:6050480-6050499 None:intergenic 45.0%
AAATGGAAAAATGGGGCCCA+GGG - chr4_3:6050570-6050589 None:intergenic 45.0%
AAAATGGAAAAATGGGGCCC+AGG - chr4_3:6050571-6050590 None:intergenic 45.0%
! GAAAGTACGCGTACAGAAGT+TGG - chr4_3:6050873-6050892 None:intergenic 45.0%
ACACCCAAATAGAGACGTAG+AGG - chr4_3:6051167-6051186 None:intergenic 45.0%
CGTCTCTATTTGGGTGTGAA+AGG + chr4_3:6051170-6051189 Msa0626460:intron 45.0%
CTATTTGGGTGTGAAAGGAG+AGG + chr4_3:6051175-6051194 Msa0626460:intron 45.0%
GTGAAAGGAGAGGTAGATCT+CGG + chr4_3:6051185-6051204 Msa0626460:intron 45.0%
TAATGTGTGATGCTGCTGTC+TGG + chr4_3:6051282-6051301 Msa0626460:intron 45.0%
AATGTGTGATGCTGCTGTCT+GGG + chr4_3:6051283-6051302 Msa0626460:intron 45.0%
TGCCCACTTTGAATAGCTAC+AGG + chr4_3:6051310-6051329 Msa0626460:intron 45.0%
!! ACACTGATGCTTTTCTGGCA+AGG + chr4_3:6051402-6051421 Msa0626460:intron 45.0%
GTGAACTCATTAGAGGCCTA+GGG - chr4_3:6051691-6051710 None:intergenic 45.0%
TGTGAACTCATTAGAGGCCT+AGG - chr4_3:6051692-6051711 None:intergenic 45.0%
TTTCCCAATCCCATCAAGAC+AGG - chr4_3:6051805-6051824 None:intergenic 45.0%
TTATAGCTAAGGCCCTAAGC+AGG - chr4_3:6051932-6051951 None:intergenic 45.0%
! GTACAGGTATGGTGCCAAAT+TGG + chr4_3:6052006-6052025 Msa0626460:intron 45.0%
!! TAGACTTGATAATGTGGCCC+AGG - chr4_3:6052180-6052199 None:intergenic 45.0%
TGGTAGTAGATAGTCAGGCA+CGG - chr4_3:6052275-6052294 None:intergenic 45.0%
! GAAGTGCCCATAACTGATTG+TGG + chr4_3:6052355-6052374 Msa0626460:intron 45.0%
TCTCTTGTTCAGCTCTGCAT+TGG + chr4_3:6052515-6052534 Msa0626460:intron 45.0%
TTGTTCAGCTCTGCATTGGA+AGG + chr4_3:6052519-6052538 Msa0626460:intron 45.0%
!!! TGTTTTTGGGGAAGATGCTC+TGG + chr4_3:6052581-6052600 Msa0626460:CDS 45.0%
! AGCATTGAGAAGCAATCCGA+TGG + chr4_3:6052612-6052631 Msa0626460:CDS 45.0%
AAGACTCAGAGCAATTCCCT+GGG - chr4_3:6052673-6052692 None:intergenic 45.0%
! AGGGAATTGCTCTGAGTCTT+GGG + chr4_3:6052673-6052692 Msa0626460:CDS 45.0%
TCAACTTGTGTAGTTTCGGG+TGG + chr4_3:6052789-6052808 Msa0626460:three_prime_UTR 45.0%
TTGATTTCGGTTGCGAGTGC+TGG - chr4_3:6047666-6047685 None:intergenic 50.0%
GAGGAATGGTTTCGCCGTTA+AGG - chr4_3:6047755-6047774 None:intergenic 50.0%
!! AGTGAGGACGTAACGGATGA+CGG - chr4_3:6047790-6047809 None:intergenic 50.0%
CATCGCAAGTGAGGACGTAA+CGG - chr4_3:6047797-6047816 None:intergenic 50.0%
ACAGCGTTTCGTCTCACGAA+AGG - chr4_3:6048053-6048072 None:intergenic 50.0%
GGGGGAACAGTTACAAATGG+TGG + chr4_3:6048268-6048287 Msa0626460:CDS 50.0%
! ATTCGCAGCCGCTTTAATCG+CGG - chr4_3:6048441-6048460 None:intergenic 50.0%
!! TAGGAGTCGAAAGTGCCCTA+AGG - chr4_3:6048583-6048602 None:intergenic 50.0%
GAGGTTGTTAAGACGCAGAG+CGG + chr4_3:6048692-6048711 Msa0626460:CDS 50.0%
AGGTTGTTAAGACGCAGAGC+GGG + chr4_3:6048693-6048712 Msa0626460:CDS 50.0%
! TGGGGAGTATAGGCAGATGT+TGG + chr4_3:6048730-6048749 Msa0626460:CDS 50.0%
GTATAGGCAGATGTTGGTGC+AGG + chr4_3:6048736-6048755 Msa0626460:CDS 50.0%
TGTTGCGTCTGCTATGGATG+TGG + chr4_3:6048841-6048860 Msa0626460:CDS 50.0%
!! GGATGTGGTTGTTTTCGTGC+GGG + chr4_3:6048856-6048875 Msa0626460:CDS 50.0%
TCTATCAGATTCGGGCTGCT+AGG + chr4_3:6048939-6048958 Msa0626460:CDS 50.0%
CTATCAGATTCGGGCTGCTA+GGG + chr4_3:6048940-6048959 Msa0626460:CDS 50.0%
! GGGTTTGTTCTTGTGCTCTG+TGG + chr4_3:6048960-6048979 Msa0626460:CDS 50.0%
TCTCTTTCGGAGGTTGAGAG+TGG + chr4_3:6049004-6049023 Msa0626460:CDS 50.0%
! ACCATCTCTGAGGATGGAGA+GGG + chr4_3:6049070-6049089 Msa0626460:CDS 50.0%
AGAGGGTCAGGAGACATCAA+AGG + chr4_3:6049087-6049106 Msa0626460:CDS 50.0%
ACTCGACCACTGTGTCTTCT+AGG + chr4_3:6049125-6049144 Msa0626460:CDS 50.0%
AGTCTCAAGAGCAGCACTCT+GGG - chr4_3:6049185-6049204 None:intergenic 50.0%
AGACAGAGATCCCTGCACAA+GGG - chr4_3:6049224-6049243 None:intergenic 50.0%
AAGACAGAGATCCCTGCACA+AGG - chr4_3:6049225-6049244 None:intergenic 50.0%
ATGGTCTCAATGCTGCAGCT+TGG + chr4_3:6049397-6049416 Msa0626460:CDS 50.0%
AGATATGGCTGGAATCCTGC+AGG + chr4_3:6049518-6049537 Msa0626460:CDS 50.0%
! GAGCTTTGTGAAGATGCTCG+CGG + chr4_3:6049543-6049562 Msa0626460:CDS 50.0%
CCTCATCTTCGAGCTCAAGT+TGG - chr4_3:6049968-6049987 None:intergenic 50.0%
CCAACTTGAGCTCGAAGATG+AGG + chr4_3:6049965-6049984 Msa0626460:CDS 50.0%
GACGATCTTAAACGTGCCAC+TGG + chr4_3:6049993-6050012 Msa0626460:CDS 50.0%
TACTGTCATCAACCGGACCA+AGG + chr4_3:6050142-6050161 Msa0626460:CDS 50.0%
TCTGGAGAGTTTCCTTGGTC+CGG - chr4_3:6050157-6050176 None:intergenic 50.0%
GCGTCCACAAAACTACACTC+TGG + chr4_3:6050223-6050242 Msa0626460:CDS 50.0%
!! GGAGCCAGAGTGTAGTTTTG+TGG - chr4_3:6050230-6050249 None:intergenic 50.0%
! TCCTGCATCTTGTGCTGATG+TGG + chr4_3:6050406-6050425 Msa0626460:CDS 50.0%
! CTATGTGGGCTGAGTTTGAG+TGG + chr4_3:6050438-6050457 Msa0626460:CDS 50.0%
TGTACGCGTACTTTCCACCT+TGG + chr4_3:6050878-6050897 Msa0626460:intron 50.0%
GTCCCCTAGTAGTAGCCTAA+TGG + chr4_3:6050947-6050966 Msa0626460:intron 50.0%
AAAGGAGAGGTAGATCTCGG+TGG + chr4_3:6051188-6051207 Msa0626460:intron 50.0%
TGGTCCTGTCTTGATGGGAT+TGG + chr4_3:6051798-6051817 Msa0626460:intron 50.0%
GGTCCTGTCTTGATGGGATT+GGG + chr4_3:6051799-6051818 Msa0626460:intron 50.0%
CAAGATGAGAGGGAGTTCCT+GGG + chr4_3:6052160-6052179 Msa0626460:CDS 50.0%
TCTGCATTGGAAGGTGAGTG+TGG + chr4_3:6052528-6052547 Msa0626460:CDS 50.0%
CAAGACTCAGAGCAATTCCC+TGG - chr4_3:6052674-6052693 None:intergenic 50.0%
! CAGGGAATTGCTCTGAGTCT+TGG + chr4_3:6052672-6052691 Msa0626460:CDS 50.0%
! GGGAATTGCTCTGAGTCTTG+GGG + chr4_3:6052674-6052693 Msa0626460:CDS 50.0%
CGGTGTGATCATCGCAAGTG+AGG - chr4_3:6047806-6047825 None:intergenic 55.0%
TCAAGCAACTGCTCCCCTTG+AGG - chr4_3:6048104-6048123 None:intergenic 55.0%
! TGCACCGACCGCGATTAAAG+CGG + chr4_3:6048430-6048449 Msa0626460:CDS 55.0%
GGTTGTTAAGACGCAGAGCG+GGG + chr4_3:6048694-6048713 Msa0626460:CDS 55.0%
! AGCGGGGAGCATGAGAAGAA+TGG + chr4_3:6048710-6048729 Msa0626460:CDS 55.0%
! GCGGGGAGCATGAGAAGAAT+GGG + chr4_3:6048711-6048730 Msa0626460:CDS 55.0%
! CGGGGAGCATGAGAAGAATG+GGG + chr4_3:6048712-6048731 Msa0626460:CDS 55.0%
ACAACAGTACTCGCCACCTC+CGG - chr4_3:6048788-6048807 None:intergenic 55.0%
! CACCATCTCTGAGGATGGAG+AGG + chr4_3:6049069-6049088 Msa0626460:CDS 55.0%
ACCCTCTCCATCCTCAGAGA+TGG - chr4_3:6049074-6049093 None:intergenic 55.0%
GACATCAAAGGCTGTGCAGC+AGG + chr4_3:6049099-6049118 Msa0626460:CDS 55.0%
CGACCACTGTGTCTTCTAGG+AGG + chr4_3:6049128-6049147 Msa0626460:CDS 55.0%
AGGCCTCCTAGAAGACACAG+TGG - chr4_3:6049134-6049153 None:intergenic 55.0%
CTGGGTAGCATAGGTCCCAT+CGG - chr4_3:6049167-6049186 None:intergenic 55.0%
AGCAGCACTCTGGGTAGCAT+AGG - chr4_3:6049176-6049195 None:intergenic 55.0%
CAGTCTCAAGAGCAGCACTC+TGG - chr4_3:6049186-6049205 None:intergenic 55.0%
AGAGATCCCTGCACAAGGGT+AGG - chr4_3:6049220-6049239 None:intergenic 55.0%
TACATGCGACAACTGCCCCA+AGG - chr4_3:6049291-6049310 None:intergenic 55.0%
CTTCACAAAGCTCTGCCTGC+AGG - chr4_3:6049536-6049555 None:intergenic 55.0%
GAGGTCATCAGGCTGTGCAT+TGG - chr4_3:6049617-6049636 None:intergenic 55.0%
TGAGCTCGAAGATGAGGTGC+AGG + chr4_3:6049971-6049990 Msa0626460:CDS 55.0%
GCCACATCAGCACAAGATGC+AGG - chr4_3:6050410-6050429 None:intergenic 55.0%
GCAAGATGAGAGGGAGTTCC+TGG + chr4_3:6052159-6052178 Msa0626460:CDS 55.0%
AAGGAACTCACGGTGGAGTC+AGG - chr4_3:6052216-6052235 None:intergenic 55.0%
GGCAGCTACAGCTTCAAGCT+TGG + chr4_3:6052810-6052829 Msa0626460:three_prime_UTR 55.0%
CGCGGTCGGTGCAGAACTAA+GGG - chr4_3:6048423-6048442 None:intergenic 60.0%
TCGCGGTCGGTGCAGAACTA+AGG - chr4_3:6048424-6048443 None:intergenic 60.0%
! GCAGCCGCTTTAATCGCGGT+CGG - chr4_3:6048437-6048456 None:intergenic 60.0%
! CTCTGAGGATGGAGAGGGTC+AGG + chr4_3:6049075-6049094 Msa0626460:CDS 60.0%
AGGCCTGCGATTCTTGCCGA+TGG + chr4_3:6049148-6049167 Msa0626460:CDS 60.0%
GGCCTGCGATTCTTGCCGAT+GGG + chr4_3:6049149-6049168 Msa0626460:CDS 60.0%
GTCCCATCGGCAAGAATCGC+AGG - chr4_3:6049154-6049173 None:intergenic 60.0%
CACAAGGGTAGGCGGTGACA+TGG - chr4_3:6049209-6049228 None:intergenic 60.0%
TCACCGCCTACCCTTGTGCA+GGG + chr4_3:6049211-6049230 Msa0626460:CDS 60.0%
GATCCCTGCACAAGGGTAGG+CGG - chr4_3:6049217-6049236 None:intergenic 60.0%
GTCACCGCCTACCCTTGTGC+AGG + chr4_3:6049210-6049229 Msa0626460:CDS 65.0%
TAAGCAGCGCCGTGAGACCG+AGG + chr4_3:6049567-6049586 Msa0626460:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 6047426 6053092 6047426 ID=Msa0626460;Name=Msa0626460
chr4_3 mRNA 6047426 6053092 6047426 ID=Msa0626460-mRNA-1;Parent=Msa0626460;Name=Msa0626460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=192|0.66|0.75|1|1|1|4|358|969
chr4_3 exon 6047426 6049666 6047426 ID=Msa0626460-mRNA-1:exon:1716;Parent=Msa0626460-mRNA-1
chr4_3 exon 6049903 6050469 6049903 ID=Msa0626460-mRNA-1:exon:1717;Parent=Msa0626460-mRNA-1
chr4_3 exon 6052139 6052224 6052139 ID=Msa0626460-mRNA-1:exon:1718;Parent=Msa0626460-mRNA-1
chr4_3 exon 6052527 6053092 6052527 ID=Msa0626460-mRNA-1:exon:1719;Parent=Msa0626460-mRNA-1
chr4_3 five_prime_UTR 6047426 6047617 6047426 ID=Msa0626460-mRNA-1:five_prime_utr;Parent=Msa0626460-mRNA-1
chr4_3 CDS 6047618 6049666 6047618 ID=Msa0626460-mRNA-1:cds;Parent=Msa0626460-mRNA-1
chr4_3 CDS 6049903 6050469 6049903 ID=Msa0626460-mRNA-1:cds;Parent=Msa0626460-mRNA-1
chr4_3 CDS 6052139 6052224 6052139 ID=Msa0626460-mRNA-1:cds;Parent=Msa0626460-mRNA-1
chr4_3 CDS 6052527 6052734 6052527 ID=Msa0626460-mRNA-1:cds;Parent=Msa0626460-mRNA-1
chr4_3 three_prime_UTR 6052735 6053092 6052735 ID=Msa0626460-mRNA-1:three_prime_utr;Parent=Msa0626460-mRNA-1
Gene Sequence

>Msa0626460

ATGGAGAAATCATGCAGCCTCATCGTCCATTTCGACAAAGGAACACCAGCACTCGCAACCGAAATCAAAGAATCTCTCGAAGGAAACGACGTCGCTGCGAAAATCGAAGCTCTCAAAAAAGCAATCATGCTTCTCCTTAACGGCGAAACCATTCCTCAACTCTTCATCACCGTCATCCGTTACGTCCTCACTTGCGATGATCACACCGTTCAAAAACTCCTCCTTCTTTACCTCGAAATCACCGATAAAACCGATTCTCGCGGTAAAGTTCTCCCTGAAATGATCTTAATCTGTCAAAATCTTCGTAATAATCTTCAATCACCGAACGAATTTATTCGCGGTGTTACTTTACGATTTCTGTGTAGAATTAACGAATCTGAGATTGTTGAACCGTTGATTCCTTCGATTTTATCGAATCTGGAGCATCGTCATCCTTTCGTGAGACGAAACGCTGTTCTCGCTGTTATGTCTGTTTATAAGCTTCCTCAAGGGGAGCAGTTGCTTGATTCTGCTCCTGAGATTGTTGAGAAATTTCTTGTTTCGGAGCAAGATGCTTCGAGTAAGAGGAACGCGTTTTTAATGCTGTTTTCGTGTGCGCAAGATCGTGCTGTGAATTATCTTTTTACGAATATTGATAGGATTATTGATTGGGGGGAACAGTTACAAATGGTGGTTTTGGAATTGATAAAGAAAGTTTGTAGGAATAATAAGGGAGAGAAAGGGAAATATATTAAGATTATTATTTCTTTGTTGAGTGCTAATTCTACCGCTGTTGTTTATGAATGTGCTGGTACGCTTGTTTCCCTTAGTTCTGCACCGACCGCGATTAAAGCGGCTGCGAATACTTATTGTCAGTTGTTGCTTTCTCAAAGTGATAACAATGTGAAGCTTATTGTGCTTGATCGACTTAACGAGCTTAAGAGGGATAATAGGGAGATTATGGTTGATATGGTTATGGATGTCCTTAGGGCACTTTCGACTCCTAATCATGATATTAGAAGGAAAACTATTGATATTGCTCTTGAGCTTATTACACCTAAGAATATTGATCAGGTTGTTATGATGCTTAAGAAGGAGGTTGTTAAGACGCAGAGCGGGGAGCATGAGAAGAATGGGGAGTATAGGCAGATGTTGGTGCAGGCAATTCATACTTGTGCTATTAAGTTTCCGGAGGTGGCGAGTACTGTTGTGCATTTGTTGATGGATTTCTTGGGAGATACAAATGTTGCGTCTGCTATGGATGTGGTTGTTTTCGTGCGGGAGATTATTGAGACAAACCCTAAGCTGCGTGTTTCTATCATCACTAGGCTTTTGGATACTTTCTATCAGATTCGGGCTGCTAGGGTTTGTTCTTGTGCTCTGTGGATTATTGGTGAGTATTGTTTGTCTCTTTCGGAGGTTGAGAGTGGAATTGCAACTATTAAGCAGTGTCTTGGTGATCTTCCCTTTTACACCATCTCTGAGGATGGAGAGGGTCAGGAGACATCAAAGGCTGTGCAGCAGGTGAACTCGACCACTGTGTCTTCTAGGAGGCCTGCGATTCTTGCCGATGGGACCTATGCTACCCAGAGTGCTGCTCTTGAGACTGCCATGTCACCGCCTACCCTTGTGCAGGGATCTCTGTCTTCTATTGGGAACTTGAGATCTCTGATTCTTTCGGGTGATTTCTTCCTTGGGGCAGTTGTCGCATGTACACTGACAAAGCTTATCTTAAGGTTGGAAGAGGTTCAGACCTCAAAAGTTGAAGTTAACAAGGCAACTTCACAGTCCTTGTTGATCATGGTCTCAATGCTGCAGCTTGGTCAGTCGTCAGTTCTTCCACATCCAATTGATAATGATTCTCATGACAGGGTCGTCCTTTGCATTAGATTGCTGTGTAATACTGGTGATGAGATAAGGAAGATATGGCTGGAATCCTGCAGGCAGAGCTTTGTGAAGATGCTCGCGGATAAGCAGCGCCGTGAGACCGAGGAGATTAAAGCAAAGGCACAGATTTCCAATGCACAGCCTGATGACCTCATCGACTTTTATCACTTGAAGAGCAGAAAGTACACTTACTCATCTGGTATTCATTCAAATGTTCAATCTGTCTATGCTTTTCAGGGTATGAGCCAACTTGAGCTCGAAGATGAGGTGCAGGACGATCTTAAACGTGCCACTGGAGAGTTTACAAAGGATGCTGATGATGCAAATAAACTTAATCGCATTCTTCAGCTCACTGGGTTCAGTGATCCTGTCTATGCTGAAGCATATGTAACAGTGCATCATTATGACATTGTCCTTGATGTTACTGTCATCAACCGGACCAAGGAAACTCTCCAGAATTTATGTTTGGAGTTAGCAACTATGGGTGATCTCAAACTTGTTGAGCGTCCACAAAACTACACTCTGGCTCCAGAATCAAGCAAACAGATCAAGGCCAACATCAAGGTTTCTTCCACTGAAACTGGAGTTATATTCGGTAATATAGTTTATGAGACATCTTCAAATGTTCTTGAGAGAACAGTTATTGTTCTAAATGACATTCATATTGATATCATGGACTATATTGCTCCTGCATCTTGTGCTGATGTGGCCTTTAGAACTATGTGGGCTGAGTTTGAGTGGGAAAACAAGGTTGCTGTAAATACGGTATTGCAAGATGAGAGGGAGTTCCTGGGCCACATTATCAAGTCTACAAATATGAAGTGCCTGACTCCACCCTCTGCATTGGAAGGTGAGTGTGGTTTTCTAGCTGCAAATCTGTATGCAAAGAGTGTTTTTGGGGAAGATGCTCTGGTGAATGTTAGCATTGAGAAGCAATCCGATGGTAAATTGAGCGGTTATATCAGAATAAGAAGTAAAACCCAGGGAATTGCTCTGAGTCTTGGGGATAAAATCACTTTGAAGCAGAAGGGAACTGCTCAATAG
Protein sequence

>Msa0626460

MEKSCSLIVHFDKGTPALATEIKESLEGNDVAAKIEALKKAIMLLLNGETIPQLFITVIRYVLTCDDHTVQKLLLLYLEITDKTDSRGKVLPEMILICQNLRNNLQSPNEFIRGVTLRFLCRINESEIVEPLIPSILSNLEHRHPFVRRNAVLAVMSVYKLPQGEQLLDSAPEIVEKFLVSEQDASSKRNAFLMLFSCAQDRAVNYLFTNIDRIIDWGEQLQMVVLELIKKVCRNNKGEKGKYIKIIISLLSANSTAVVYECAGTLVSLSSAPTAIKAAANTYCQLLLSQSDNNVKLIVLDRLNELKRDNREIMVDMVMDVLRALSTPNHDIRRKTIDIALELITPKNIDQVVMMLKKEVVKTQSGEHEKNGEYRQMLVQAIHTCAIKFPEVASTVVHLLMDFLGDTNVASAMDVVVFVREIIETNPKLRVSIITRLLDTFYQIRAARVCSCALWIIGEYCLSLSEVESGIATIKQCLGDLPFYTISEDGEGQETSKAVQQVNSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLSSIGNLRSLILSGDFFLGAVVACTLTKLILRLEEVQTSKVEVNKATSQSLLIMVSMLQLGQSSVLPHPIDNDSHDRVVLCIRLLCNTGDEIRKIWLESCRQSFVKMLADKQRRETEEIKAKAQISNAQPDDLIDFYHLKSRKYTYSSGIHSNVQSVYAFQGMSQLELEDEVQDDLKRATGEFTKDADDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSSNVLERTVIVLNDIHIDIMDYIAPASCADVAFRTMWAEFEWENKVAVNTVLQDEREFLGHIIKSTNMKCLTPPSALEGECGFLAANLYAKSVFGEDALVNVSIEKQSDGKLSGYIRIRSKTQGIALSLGDKITLKQKGTAQ*