AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626270 MtrunA17_Chr4g0002391 92.548 671 48 1 1 669 1 671 0.0 1273
Msa0626270 MtrunA17_Chr2g0300651 78.774 669 134 5 1 664 1 666 0.0 1055
Msa0626270 MtrunA17_Chr1g0147911 44.838 649 336 10 5 644 23 658 0.0 549
Msa0626270 MtrunA17_Chr1g0197101 24.328 670 421 17 13 640 17 642 1.82e-44 169
Msa0626270 MtrunA17_Chr1g0177671 26.290 407 279 7 246 640 229 626 2.65e-41 159
Msa0626270 MtrunA17_Chr1g0152401 25.077 650 427 19 7 607 26 664 6.23e-37 147
Msa0626270 MtrunA17_Chr8g0344461 25.450 444 302 8 220 638 165 604 1.30e-35 142
Msa0626270 MtrunA17_Chr7g0219041 26.718 524 310 16 174 638 157 665 2.13e-33 136
Msa0626270 MtrunA17_Chr5g0431731 25.682 440 294 10 220 638 205 632 1.41e-32 134
Msa0626270 MtrunA17_Chr4g0057561 25.959 443 296 13 216 638 249 679 5.07e-30 126
Msa0626270 MtrunA17_Chr7g0224041 25.107 466 305 15 207 640 198 651 1.70e-29 124
Msa0626270 MtrunA17_Chr3g0086881 26.923 442 296 11 216 642 182 611 1.08e-28 121
Msa0626270 MtrunA17_Chr3g0106431 25.404 433 302 11 219 638 194 618 1.34e-25 112
Msa0626270 MtrunA17_Chr4g0030621 23.833 407 285 6 227 610 181 585 2.23e-24 108
Msa0626270 MtrunA17_Chr5g0432041 23.326 463 315 15 202 640 230 676 2.19e-22 102
Msa0626270 MtrunA17_Chr3g0104851 23.460 341 234 9 281 607 312 639 2.28e-22 102
Msa0626270 MtrunA17_Chr2g0327741 22.613 398 284 8 222 603 163 552 4.97e-22 100
Msa0626270 MtrunA17_Chr1g0182041 24.074 432 299 12 227 637 177 600 9.02e-22 100
Msa0626270 MtrunA17_Chr6g0462011 23.629 529 342 15 158 637 208 723 2.10e-21 99.4
Msa0626270 MtrunA17_Chr5g0431741 23.182 440 307 12 220 638 262 691 2.68e-21 99.0
Msa0626270 MtrunA17_Chr1g0182031 24.566 403 275 11 221 601 169 564 3.50e-20 95.1
Msa0626270 MtrunA17_Chr5g0432091 22.821 390 256 14 284 639 328 706 1.64e-19 93.2
Msa0626270 MtrunA17_Chr1g0214001 22.845 464 284 14 234 637 217 666 8.19e-19 90.9
Msa0626270 MtrunA17_Chr5g0431811 24.658 292 184 8 274 544 342 618 1.80e-15 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626270 AT4G31540.1 46.248 653 326 8 9 644 17 661 0.0 573
Msa0626270 AT1G51640.1 40.791 657 332 9 5 640 8 628 2.16e-163 485
Msa0626270 AT5G03540.2 26.591 440 293 9 220 640 88 516 1.29e-42 162
Msa0626270 AT5G03540.1 26.591 440 293 9 220 640 203 631 2.99e-42 163
Msa0626270 AT5G03540.3 26.591 440 293 9 220 640 229 657 3.87e-42 163
Msa0626270 AT5G52340.1 23.952 501 339 10 173 640 133 624 1.12e-40 158
Msa0626270 AT5G50380.1 27.273 451 284 15 216 638 236 670 2.53e-33 136
Msa0626270 AT5G13990.1 26.207 435 298 10 218 638 255 680 3.35e-31 130
Msa0626270 AT1G72470.1 24.714 437 299 10 227 638 189 620 3.57e-31 129
Msa0626270 AT3G14090.1 23.632 457 312 11 216 643 174 622 2.53e-29 124
Msa0626270 AT5G52350.1 23.620 453 319 12 204 640 137 578 3.02e-29 123
Msa0626270 AT1G54090.1 25.054 459 304 14 216 643 171 620 1.11e-28 122
Msa0626270 AT5G61010.1 26.531 392 259 12 262 638 248 625 1.41e-28 122
Msa0626270 AT5G61010.2 26.531 392 259 12 262 638 248 625 1.41e-28 122
Msa0626270 AT2G39380.1 23.721 430 304 9 227 638 186 609 5.84e-28 120
Msa0626270 AT1G07000.1 24.528 424 303 11 221 638 183 595 4.05e-27 117
Msa0626270 AT5G58430.1 24.153 443 289 11 219 638 199 617 2.21e-26 115
Msa0626270 AT5G13150.1 24.631 406 266 11 263 637 246 642 2.87e-26 114
Msa0626270 AT2G28640.1 23.361 488 339 12 174 637 100 576 4.17e-24 107
Msa0626270 AT3G29400.1 24.235 392 248 10 284 637 265 645 3.26e-23 105
Msa0626270 AT2G28650.1 23.869 398 285 6 227 615 152 540 1.21e-22 103
Msa0626270 AT5G59730.1 22.135 384 272 9 227 588 170 548 1.28e-22 103
Msa0626270 AT5G59730.2 22.135 384 272 9 227 588 170 548 1.53e-22 103
Msa0626270 AT3G55150.1 21.628 430 312 11 227 638 187 609 6.28e-19 91.7
Msa0626270 AT3G09520.1 20.872 436 320 11 227 640 175 607 7.05e-18 88.2
Msa0626270 AT1G07725.1 22.102 371 262 9 280 637 233 589 8.16e-18 88.2
Msa0626270 AT3G09530.1 20.408 441 319 11 226 640 169 603 1.50e-15 80.9

Find 319 sgRNAs with CRISPR-Local

Find 539 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTTTCATTTATCGAATT+TGG 0.092205 4_3:-5643387 Msa0626270:CDS
TTGATCTGTTTGCTTGATTC+TGG 0.132054 4_3:+5648062 None:intergenic
TAAGGAAGTTGCAATTAATT+TGG 0.152927 4_3:-5642965 Msa0626270:CDS
GCTAGAAGTTAATAACTTTC+TGG 0.157810 4_3:+5644349 None:intergenic
AATTTCTATGCCTCTTTCTT+TGG 0.191380 4_3:-5643802 Msa0626270:CDS
TCTTGTGCTCTGTGGATTAT+TGG 0.193178 4_3:-5649351 Msa0626270:five_prime_UTR
GAAAGTTTGTAGGAATAATA+AGG 0.193674 4_3:-5650012 Msa0626270:five_prime_UTR
TACTTGTGCTATTAAGTTTC+CGG 0.200425 4_3:-5649553 Msa0626270:five_prime_UTR
CCCAACTATTCCTCAAATAA+AGG 0.204100 4_3:+5642785 None:intergenic
TTGAGATCTCTGATTCTTTC+GGG 0.206526 4_3:-5649063 Msa0626270:five_prime_UTR
TTCAGATCTCACTGTGATTA+TGG 0.206641 4_3:+5650803 None:intergenic
GTGACAAAACTTACCAATTT+AGG 0.208882 4_3:+5643117 None:intergenic
TTGTCATTTCTACAATTTAA+AGG 0.217678 4_3:-5642881 Msa0626270:CDS
TTCTATCATCACTAGGCTTT+TGG 0.218921 4_3:-5649409 Msa0626270:five_prime_UTR
CTTTCGGGTGATTTCTTCCT+TGG 0.227308 4_3:-5649048 Msa0626270:five_prime_UTR
TGACAGATTAGGATCATTTC+AGG 0.238060 4_3:+5650428 None:intergenic
ACGAGCTTAAGAGGGATAAT+AGG 0.244193 4_3:-5649791 Msa0626270:five_prime_UTR
TGTACAAGAAACAATGTAAT+TGG 0.250720 4_3:-5642669 Msa0626270:CDS
GCCACAATTGAATAAGGTTT+TGG 0.254264 4_3:-5643058 Msa0626270:CDS
CACTACTCAAACGAAATTTA+TGG 0.254677 4_3:+5642395 None:intergenic
TTCTATGACTTGTCAAGATT+TGG 0.259016 4_3:-5642731 Msa0626270:CDS
AATATTGTGTTTGAGAAAAT+TGG 0.259161 4_3:-5643459 Msa0626270:CDS
TCATCATGCTTCCTCATCTT+TGG 0.263472 4_3:+5642463 None:intergenic
ATCCTCAGAGATGGTGTAAA+AGG 0.264720 4_3:+5649257 None:intergenic
ACCTGCTGCACAGCCTTTGA+TGG 0.265756 4_3:+5649219 None:intergenic
TAAATATACAACAAAGAGTT+TGG 0.268304 4_3:-5642512 Msa0626270:CDS
ATGTTTGGAGTTAGCAACTA+TGG 0.269674 4_3:-5648129 Msa0626270:five_prime_UTR
CTTGAGATCTCTGATTCTTT+CGG 0.271553 4_3:-5649064 Msa0626270:five_prime_UTR
GAGGGATAATAGGGAGATTA+TGG 0.272228 4_3:-5649781 Msa0626270:five_prime_UTR
AGATGGAAGTGTTCCTAAAT+TGG 0.279603 4_3:-5643130 Msa0626270:CDS
GCATTTGTTGATGGATTTCT+TGG 0.285633 4_3:-5649511 Msa0626270:five_prime_UTR
TTGTCACTGATTATTGTAAT+AGG 0.287360 4_3:-5643101 Msa0626270:CDS
CAGGGATCTCTGTCTTCTAT+TGG 0.298380 4_3:-5649090 Msa0626270:five_prime_UTR
AAGGTTTCTTCCACTGAAAC+TGG 0.299306 4_3:-5648029 Msa0626270:five_prime_UTR
TTCGAGAGATTCTTTGATTT+CGG 0.304898 4_3:+5650643 None:intergenic
TTTCGGGTGATTTCTTCCTT+GGG 0.305867 4_3:-5649047 Msa0626270:five_prime_UTR
TTCTTTAACACGGAAGTTAC+AGG 0.306326 4_3:-5643715 Msa0626270:CDS
TTTCCTTTGTATAGGGTAGA+TGG 0.309678 4_3:-5642361 Msa0626270:CDS
TGGATACTTTCTATCAGATT+CGG 0.310141 4_3:-5649389 Msa0626270:five_prime_UTR
GCAAGATGAGAGGGAGTTCC+TGG 0.315233 4_3:-5646151 Msa0626270:five_prime_UTR
AAGAAAGAAGAAGATGATTT+CGG 0.316437 4_3:+5650844 None:intergenic
TGAAAATTTGATAGACAAAT+GGG 0.317245 4_3:-5643538 Msa0626270:CDS
ACAGTTACAAATGGTGGTTT+TGG 0.320506 4_3:-5650045 Msa0626270:five_prime_UTR
AATTTAAAGGGCACTTTAGT+TGG 0.320605 4_3:-5642868 Msa0626270:CDS
TAGGGAGATTATGGTTGATA+TGG 0.324072 4_3:-5649772 Msa0626270:five_prime_UTR
TCAAATATATAGCATAATTA+AGG 0.324199 4_3:-5642983 Msa0626270:CDS
AGGGAATTGCTCTGAGTCTT+GGG 0.325449 4_3:-5645662 Msa0626270:five_prime_UTR
TGACAAATTGATATCTTCAT+AGG 0.335490 4_3:+5642927 None:intergenic
TTGCAATTAATTTGGATGAT+TGG 0.335736 4_3:-5642957 Msa0626270:CDS
TTCAAATAAACCTTATAGAT+TGG 0.336159 4_3:+5642586 None:intergenic
TTGAAAATTTGATAGACAAA+TGG 0.345359 4_3:-5643539 Msa0626270:CDS
GTATAAGCCACAATTGAATA+AGG 0.345577 4_3:-5643064 Msa0626270:CDS
GATTATGGTTGATATGGTTA+TGG 0.347749 4_3:-5649766 Msa0626270:five_prime_UTR
AGAGTTTGGAAAATGAGATT+TGG 0.351499 4_3:-5642498 Msa0626270:CDS
CCCTTTATTTGAGGAATAGT+TGG 0.351730 4_3:-5642786 Msa0626270:CDS
AGGTATTATACCAATCTATA+AGG 0.352783 4_3:-5642596 Msa0626270:CDS
ATATGGTTATGGATGTCCTT+AGG 0.354045 4_3:-5649755 Msa0626270:five_prime_UTR
TCTCAGTTATTGAAAACTTA+AGG 0.354476 4_3:+5643580 None:intergenic
GGATACTTTCTATCAGATTC+GGG 0.357062 4_3:-5649388 Msa0626270:five_prime_UTR
ACTCGACCACTGTGTCTTCT+AGG 0.357892 4_3:-5649194 Msa0626270:five_prime_UTR
CTCATCACAAGAATTGTTAA+TGG 0.360293 4_3:-5643219 Msa0626270:CDS
AACTCTCCAGAATTTATGTT+TGG 0.360698 4_3:-5648144 Msa0626270:five_prime_UTR
TGCTATTAAGTTTCCGGAGG+TGG 0.364681 4_3:-5649547 Msa0626270:five_prime_UTR
TAAATCCATCTCTATGCAAT+TGG 0.366779 4_3:-5644231 Msa0626270:CDS
GCAATCATGCTTCTCCTTAA+CGG 0.368170 4_3:-5650581 Msa0626270:five_prime_UTR
ACTGAAACTGGAGTTATATT+CGG 0.370062 4_3:-5648017 Msa0626270:five_prime_UTR
ATGATAGAAACACGCAGCTT+AGG 0.375297 4_3:+5649423 None:intergenic
TTCCTTCTAATATCATGATT+AGG 0.375355 4_3:+5649720 None:intergenic
TGTCATTTCTACAATTTAAA+GGG 0.375926 4_3:-5642880 Msa0626270:CDS
TGTTGAGAAATTTCTTGTTT+CGG 0.377476 4_3:-5650180 Msa0626270:five_prime_UTR
TACTGTTGTGCATTTGTTGA+TGG 0.380765 4_3:-5649520 Msa0626270:five_prime_UTR
AAAGTTTGTAGGAATAATAA+GGG 0.384005 4_3:-5650011 Msa0626270:five_prime_UTR
TATTGATAGGATCATTGATT+GGG 0.384961 4_3:-5650072 Msa0626270:five_prime_UTR
CTAACTCCAAACATAAATTC+TGG 0.384969 4_3:+5648138 None:intergenic
CTCCTAATCATGATATTAGA+AGG 0.385310 4_3:-5649722 Msa0626270:five_prime_UTR
AGAGATTAAATGCTAATAAC+AGG 0.386015 4_3:-5643683 Msa0626270:CDS
AGACAAATGGGGAAACCATT+TGG 0.386830 4_3:-5643526 Msa0626270:CDS
TGAGTATTGTTTGTCTCTTT+CGG 0.395014 4_3:-5649328 Msa0626270:five_prime_UTR
TTCACAGTCCTTGTTGATCA+TGG 0.398314 4_3:-5648941 Msa0626270:five_prime_UTR
ATCGGCTTAACGAGCTTAAG+AGG 0.398378 4_3:-5649800 Msa0626270:five_prime_UTR
TTCTTCAAGCTTCTTTGTGT+TGG 0.400561 4_3:+5644064 None:intergenic
CGAGCTTAAGAGGGATAATA+GGG 0.400973 4_3:-5649790 Msa0626270:five_prime_UTR
TGCCGAGATTGCTATTGAAT+CGG 0.402811 4_3:-5643412 Msa0626270:CDS
ATATTGATAGGATCATTGAT+TGG 0.404295 4_3:-5650073 Msa0626270:five_prime_UTR
CGACACGTGCGCCATTCTCT+AGG 0.409049 4_3:+5643889 None:intergenic
CCTTTATTTGAGGAATAGTT+GGG 0.410569 4_3:-5642785 Msa0626270:CDS
CACTTTAGTTGGAGATATGA+TGG 0.410776 4_3:-5642857 Msa0626270:CDS
ATTAGATTGCTGTGTAATAC+TGG 0.411143 4_3:-5648838 Msa0626270:five_prime_UTR
CAGGGAATTGCTCTGAGTCT+TGG 0.412830 4_3:-5645663 Msa0626270:five_prime_UTR
TCGCGGTCGGTGCAGAACTA+AGG 0.413611 4_3:+5649898 None:intergenic
TGCCTTTGCTTTAATCTCCT+CGG 0.413901 4_3:+5648735 None:intergenic
AATTGATTAAGAAAGTTTGT+AGG 0.415829 4_3:-5650022 Msa0626270:five_prime_UTR
AACTTCCGTGTTAAAGAACT+TGG 0.417073 4_3:+5643720 None:intergenic
TCAGATCTCACTGTGATTAT+GGG 0.417868 4_3:+5650804 None:intergenic
CTCCATTGTTGAAAGGTTGA+AGG 0.418143 4_3:+5650718 None:intergenic
GCGGGGAGCATGAGAAGAAT+GGG 0.418503 4_3:-5649608 Msa0626270:five_prime_UTR
TTGATTTCGGTTGCGAGTGC+TGG 0.420907 4_3:+5650656 None:intergenic
AATCGCATTCTTCAGCTCAC+TGG 0.421276 4_3:-5648257 Msa0626270:five_prime_UTR
CTCTGAGGATGGAGAGGGTC+AGG 0.422196 4_3:-5649244 Msa0626270:five_prime_UTR
GCCGAGATTGCTATTGAATC+GGG 0.422338 4_3:-5643411 Msa0626270:CDS
AGGGATCTCTGTCTTCTATT+GGG 0.424819 4_3:-5649089 Msa0626270:five_prime_UTR
AGGAATAATAAGGGAGAGAA+AGG 0.425300 4_3:-5650002 Msa0626270:five_prime_UTR
GAGATATGATGGGAGATTCA+TGG 0.425439 4_3:-5642846 Msa0626270:CDS
AAGGTTGAAGGTTTCAGATC+TGG 0.426676 4_3:+5650730 None:intergenic
ACTATGCAGCCCTTTATTTG+AGG 0.427381 4_3:-5642795 Msa0626270:CDS
AGAAATTGAGAGATCGGTTA+TGG 0.429008 4_3:+5650763 None:intergenic
AGAAATTTCTCAACAATCTC+AGG 0.429922 4_3:+5650188 None:intergenic
TCTATCAGATTCGGGCTGCT+AGG 0.430384 4_3:-5649380 Msa0626270:five_prime_UTR
CCAACTATTCCTCAAATAAA+GGG 0.431265 4_3:+5642786 None:intergenic
CATTTGTTGATGGATTTCTT+GGG 0.431544 4_3:-5649510 Msa0626270:five_prime_UTR
GAGAACTTTACCGCGAGAAT+CGG 0.432166 4_3:+5650451 None:intergenic
TCTCTTGTTCAGCTCTGCAT+TGG 0.438702 4_3:-5645820 Msa0626270:intron
GAGGAATGGTTTCGCCGTTA+AGG 0.439775 4_3:+5650567 None:intergenic
AACAAATTCAACAGCTTGAA+AGG 0.440008 4_3:+5643336 None:intergenic
TCTGGAGAGTTTCCTTGGTC+CGG 0.441384 4_3:+5648156 None:intergenic
AGCGGGGAGCATGAGAAGAA+TGG 0.445155 4_3:-5649609 Msa0626270:five_prime_UTR
TGATAGAAACACGCAGCTTA+GGG 0.445334 4_3:+5649424 None:intergenic
TAAATTCTGGAGAGTTTCCT+TGG 0.445694 4_3:+5648151 None:intergenic
TCATGAGAATCATTATCAAT+TGG 0.450088 4_3:+5648877 None:intergenic
ATTCAGCGGGTAAAACTCAT+TGG 0.451085 4_3:+5643950 None:intergenic
GGAAAACATATGCAAGCATT+TGG 0.451497 4_3:-5642623 Msa0626270:CDS
TATGGTTATGGATGTCCTTA+GGG 0.454595 4_3:-5649754 Msa0626270:five_prime_UTR
CTTTAATCTCCTCGGTCTCA+CGG 0.455907 4_3:+5648743 None:intergenic
CGGTGATTTCGAGGTAAAGA+AGG 0.456385 4_3:+5650480 None:intergenic
GAGAAATGAACTATTTGAAG+AGG 0.456759 4_3:-5643019 Msa0626270:CDS
AAGGAACTCACGGTGGAGTC+AGG 0.457955 4_3:+5646097 None:intergenic
CAAGACTCAGAGCAATTCCC+TGG 0.458458 4_3:+5645664 None:intergenic
TGACATTCATATTGATATCA+TGG 0.459711 4_3:-5647937 Msa0626270:five_prime_UTR
GCCATCAAAGGCTGTGCAGC+AGG 0.460529 4_3:-5649220 Msa0626270:five_prime_UTR
GTTATTAGCATTTAATCTCT+CGG 0.461339 4_3:+5643686 None:intergenic
GTCCCATCGGCAAGAATCGC+AGG 0.461816 4_3:+5649168 None:intergenic
GACAAAGCTTATCTTAAGGT+TGG 0.462489 4_3:-5649004 Msa0626270:five_prime_UTR
GTCATAGGTTGCTGTAAATA+CGG 0.462568 4_3:-5646178 Msa0626270:intron
ATGAGAAGAATGGGGAGTAT+AGG 0.463060 4_3:-5649599 Msa0626270:five_prime_UTR
TCTTAACAACCAACTCCAAA+TGG 0.464478 4_3:+5643511 None:intergenic
CGCGGTCGGTGCAGAACTAA+GGG 0.465199 4_3:+5649899 None:intergenic
ATCTGAAGAAATTGAGAGAT+CGG 0.470955 4_3:+5650757 None:intergenic
TACACCGAAGAATATTGATC+AGG 0.471600 4_3:-5649670 Msa0626270:five_prime_UTR
TCCAAAACCTTATTCAATTG+TGG 0.476940 4_3:+5643057 None:intergenic
CAGTCTCAAGAGCAGCACTC+TGG 0.477594 4_3:+5649136 None:intergenic
AGCAAGATGCTTCGAGTAAG+AGG 0.478958 4_3:-5650157 Msa0626270:five_prime_UTR
TTGATAATGATTCTCATGAC+AGG 0.479100 4_3:-5648873 Msa0626270:five_prime_UTR
CACTGACAAAGCTTATCTTA+AGG 0.479698 4_3:-5649008 Msa0626270:five_prime_UTR
GAATTGCAAGCCCTAGAGAA+TGG 0.479708 4_3:-5643900 Msa0626270:CDS
CTATCAGATTCGGGCTGCTA+GGG 0.480565 4_3:-5649379 Msa0626270:five_prime_UTR
CTTGCAAGGACAAACACCTT+TGG 0.480696 4_3:+5644261 None:intergenic
AAAAGCACTTCTCAACCAAC+TGG 0.485376 4_3:+5644004 None:intergenic
CTCAGCCCACATAGTTCTAA+AGG 0.487112 4_3:+5647881 None:intergenic
ATCGCATTCTTCAGCTCACT+GGG 0.488030 4_3:-5648256 Msa0626270:five_prime_UTR
ACTTTCCAATTGCATAGAGA+TGG 0.488044 4_3:+5644226 None:intergenic
AGAATCAAGCAAACAGATCA+AGG 0.488212 4_3:-5648060 Msa0626270:five_prime_UTR
CTCATCGTTCACTTCGACAA+AGG 0.489294 4_3:-5650683 Msa0626270:five_prime_UTR
GTCACCGCCTACCCTTGTGC+AGG 0.489447 4_3:-5649109 Msa0626270:five_prime_UTR
GTGATGAGATAAGGAAGATA+TGG 0.490653 4_3:-5648816 Msa0626270:five_prime_UTR
TTGTTCAGCTCTGCATTGGA+AGG 0.494510 4_3:-5645816 Msa0626270:intron
AGGTTGTTAAGACGCAGAGC+GGG 0.495077 4_3:-5649626 Msa0626270:five_prime_UTR
CTTCACAAAGCTCTGCCTGC+AGG 0.495433 4_3:+5648786 None:intergenic
TCCCGATTCAATAGCAATCT+CGG 0.496223 4_3:+5643410 None:intergenic
GTTAATGAAACCAAAGAAAG+AGG 0.500129 4_3:+5643792 None:intergenic
TAAAATCACTTTGAAGCAGA+AGG 0.501025 4_3:-5645637 Msa0626270:five_prime_UTR
GCTTATCTTAAGGTTGGAAG+AGG 0.501167 4_3:-5648998 Msa0626270:five_prime_UTR
TTTCTTGTACATTTCATCAA+AGG 0.501691 4_3:+5642681 None:intergenic
TAAAAGTCGATGAGGTCATC+AGG 0.502253 4_3:+5648694 None:intergenic
CAATTCTTGCAATATTCTCA+AGG 0.506772 4_3:+5643917 None:intergenic
GCAACTATTAAGCAGTGTCT+TGG 0.506903 4_3:-5649288 Msa0626270:five_prime_UTR
TCCTGCATCTTGTGCTGATG+TGG 0.507317 4_3:-5647904 Msa0626270:five_prime_UTR
GGTTGTTATGATGCTTAAGA+AGG 0.507964 4_3:-5649649 Msa0626270:five_prime_UTR
CCATTTCCACCATTTCAGAA+AGG 0.509307 4_3:-5650914 None:intergenic
GGATTTAAGTGAAGCTTGCA+AGG 0.514573 4_3:+5644247 None:intergenic
ATGGGGAAACCATTTGGAGT+TGG 0.518312 4_3:-5643520 Msa0626270:CDS
ACAACCTGATCAATATTCTT+CGG 0.518597 4_3:+5649666 None:intergenic
TGAAGCTTATTGTGCTTGAT+CGG 0.519817 4_3:-5649818 Msa0626270:five_prime_UTR
TCCTCAGAGATGGTGTAAAA+GGG 0.521024 4_3:+5649258 None:intergenic
AGTGGAAGAAACCTTGATGT+TGG 0.521670 4_3:+5648037 None:intergenic
TAGACTTGATAATGTGGCCC+AGG 0.522945 4_3:+5646133 None:intergenic
GCCACATCAGCACAAGATGC+AGG 0.523769 4_3:+5647903 None:intergenic
TTGATGTTACTGTCATCAAC+CGG 0.524042 4_3:-5648175 Msa0626270:five_prime_UTR
AGGATTTGTTTACATTCAGC+GGG 0.525653 4_3:+5643937 None:intergenic
AGGCCTGCGATTCTTGCCGA+TGG 0.526847 4_3:-5649171 Msa0626270:five_prime_UTR
GACAGATTAGGATCATTTCA+GGG 0.527691 4_3:+5650429 None:intergenic
TGTTATGATGCTTAAGAAGG+AGG 0.528121 4_3:-5649646 Msa0626270:five_prime_UTR
TGTTTGGAGTTAGCAACTAT+GGG 0.530203 4_3:-5648128 Msa0626270:five_prime_UTR
AGTCTCAAGAGCAGCACTCT+GGG 0.531103 4_3:+5649137 None:intergenic
AAGGATTTGTTTACATTCAG+CGG 0.531954 4_3:+5643936 None:intergenic
ACCCTCTCCATCCTCAGAGA+TGG 0.532455 4_3:+5649248 None:intergenic
TACAAATGTTGCGTCTGCTA+TGG 0.534308 4_3:-5649484 Msa0626270:five_prime_UTR
TCTCTTTCGGAGGTTGAGAG+TGG 0.534403 4_3:-5649315 Msa0626270:five_prime_UTR
CACAAGGGTAGGCGGTGACA+TGG 0.536144 4_3:+5649113 None:intergenic
CCATCTGAGGGAGGACATGT+TGG 0.539039 4_3:+5643147 None:intergenic
CCAACATGTCCTCCCTCAGA+TGG 0.539054 4_3:-5643147 Msa0626270:CDS
TACGGTATTGCAAGATGAGA+GGG 0.541044 4_3:-5646160 Msa0626270:five_prime_UTR
GACGATCTTAAACGTGCCAC+TGG 0.541667 4_3:-5648317 Msa0626270:five_prime_UTR
GAGGTCATCAGGCTGTGCAT+TGG 0.542020 4_3:+5648705 None:intergenic
CATCGCAAGTGAGGACGTAA+CGG 0.542360 4_3:+5650525 None:intergenic
GAGAATGGCGCACGTGTCGA+TGG 0.543171 4_3:-5643885 Msa0626270:CDS
ATGTGGCCTTTAGAACTATG+TGG 0.543399 4_3:-5647887 Msa0626270:five_prime_UTR
TCTGTTTATAAGCTTCCTCA+AGG 0.549635 4_3:-5650233 Msa0626270:five_prime_UTR
ACATATGCTTCAGCATAGAC+AGG 0.550275 4_3:+5648224 None:intergenic
AGAAATGAACTATTTGAAGA+GGG 0.550610 4_3:-5643018 Msa0626270:CDS
GGGTTTGTTCTTGTGCTCTG+TGG 0.551774 4_3:-5649359 Msa0626270:five_prime_UTR
ACAGATCAAGGCCAACATCA+AGG 0.551932 4_3:-5648048 Msa0626270:five_prime_UTR
TGAGCTCGAAGATGAGGTGC+AGG 0.552537 4_3:-5648339 Msa0626270:five_prime_UTR
AACCTTCAACCTTTCAACAA+TGG 0.553864 4_3:-5650720 Msa0626270:five_prime_UTR
TGAGATAAGGAAGATATGGC+TGG 0.554553 4_3:-5648812 Msa0626270:five_prime_UTR
TGTTTATAAGCTTCCTCAAG+GGG 0.557926 4_3:-5650231 Msa0626270:five_prime_UTR
ACACCGCGAATAAATTCGTT+CGG 0.559084 4_3:+5650380 None:intergenic
CTCAAAAGTTGAAGTTAACA+AGG 0.559317 4_3:-5648968 Msa0626270:five_prime_UTR
ATATGCAAGCATTTGGTGGA+AGG 0.560003 4_3:-5642616 Msa0626270:CDS
GTATAGGCAGATGTTGGTGC+AGG 0.560283 4_3:-5649583 Msa0626270:five_prime_UTR
GGCCTGCGATTCTTGCCGAT+GGG 0.560801 4_3:-5649170 Msa0626270:five_prime_UTR
ATGGTCTCAATGCTGCAGCT+TGG 0.561190 4_3:-5648922 Msa0626270:five_prime_UTR
AGATATGGCTGGAATCCTGC+AGG 0.561257 4_3:-5648801 Msa0626270:five_prime_UTR
AAACATATGCAAGCATTTGG+TGG 0.561879 4_3:-5642620 Msa0626270:CDS
GACACGTGCGCCATTCTCTA+GGG 0.562375 4_3:+5643890 None:intergenic
TTTAGGAACACTTCCATCTG+AGG 0.563898 4_3:+5643134 None:intergenic
TCACCGAACGAATTTATTCG+CGG 0.565447 4_3:-5650383 Msa0626270:five_prime_UTR
ACAGCGTTTCGTCTCACGAA+AGG 0.565951 4_3:+5650269 None:intergenic
ACTGTGTATGTTGAAATTCG+TGG 0.566543 4_3:-5643645 Msa0626270:CDS
CTGTTTATAAGCTTCCTCAA+GGG 0.566708 4_3:-5650232 Msa0626270:five_prime_UTR
GTCAATTGAAAATGATGGTG+TGG 0.566793 4_3:-5642551 Msa0626270:CDS
ACAACAGTACTCGCCACCTC+CGG 0.567962 4_3:+5649534 None:intergenic
ATGATTTCTCCATTGTTGAA+AGG 0.569191 4_3:+5650711 None:intergenic
ATTGCAAGTTAGCAACCAGT+TGG 0.569658 4_3:-5644019 Msa0626270:CDS
AAAATTCAAATCTTGCTTCG+CGG 0.570677 4_3:+5643743 None:intergenic
ATTGATAGGATCATTGATTG+GGG 0.572572 4_3:-5650071 Msa0626270:five_prime_UTR
TTATCACTTGAAGAGCAGAA+AGG 0.572845 4_3:-5648674 Msa0626270:intron
TGAGTTTGAGTGGGAAAACA+AGG 0.573213 4_3:-5647862 Msa0626270:intron
GGAATAATAAGGGAGAGAAA+GGG 0.575016 4_3:-5650001 Msa0626270:five_prime_UTR
TTCGGGTGATTTCTTCCTTG+GGG 0.575242 4_3:-5649046 Msa0626270:five_prime_UTR
TTGGAAAGATTGTTACTGAG+AGG 0.575693 4_3:-5643368 Msa0626270:CDS
GAATCATTATCAATTGGATG+TGG 0.584531 4_3:+5648883 None:intergenic
GATTACAGCTTCTTAACCAA+AGG 0.584800 4_3:-5644277 Msa0626270:CDS
GTATTGTTTGTCTCTTTCGG+AGG 0.585959 4_3:-5649325 Msa0626270:five_prime_UTR
CACCATCTCTGAGGATGGAG+AGG 0.586391 4_3:-5649250 Msa0626270:five_prime_UTR
TATTTGTAGACTTGATAATG+TGG 0.587171 4_3:+5646127 None:intergenic
CAAGATGAGAGGGAGTTCCT+GGG 0.587875 4_3:-5646150 Msa0626270:five_prime_UTR
ACTTTAGTTGGAGATATGAT+GGG 0.588067 4_3:-5642856 Msa0626270:CDS
CGGTGTGATCATCGCAAGTG+AGG 0.588315 4_3:+5650516 None:intergenic
GTAATACTGGTGATGAGATA+AGG 0.591054 4_3:-5648825 Msa0626270:five_prime_UTR
CCTCATCTTCGAGCTCAAGT+TGG 0.591377 4_3:+5648345 None:intergenic
CAGAATAAGAAGTAAAACCC+AGG 0.591954 4_3:-5645682 Msa0626270:five_prime_UTR
TCAAGCAACTGCTCCCCTTG+AGG 0.592174 4_3:+5650218 None:intergenic
AGCAGCACTCTGGGTAGCAT+AGG 0.593369 4_3:+5649146 None:intergenic
TGATAGGATCATTGATTGGG+GGG 0.593801 4_3:-5650069 Msa0626270:five_prime_UTR
TTAGGAACACTTCCATCTGA+GGG 0.594995 4_3:+5643135 None:intergenic
GAAAATTTGATAGACAAATG+GGG 0.597319 4_3:-5643537 Msa0626270:CDS
GATAAAATCGAAGGAATCAA+CGG 0.600291 4_3:+5650311 None:intergenic
AGTGAGGACGTAACGGATGA+CGG 0.601311 4_3:+5650532 None:intergenic
GCAGCCGCTTTAATCGCGGT+CGG 0.602852 4_3:+5649885 None:intergenic
GCTGTTGTTTATGAATGTGC+TGG 0.603920 4_3:-5649933 Msa0626270:five_prime_UTR
TGCACCGACCGCGATTAAAG+CGG 0.605018 4_3:-5649889 Msa0626270:five_prime_UTR
TGGGGAGTATAGGCAGATGT+TGG 0.605111 4_3:-5649589 Msa0626270:five_prime_UTR
AAGACAGAGATCCCTGCACA+AGG 0.605670 4_3:+5649097 None:intergenic
TAATATGTGATGACATGTTG+AGG 0.606221 4_3:-5642645 Msa0626270:CDS
GACCGAGGAGATTAAAGCAA+AGG 0.607890 4_3:-5648737 Msa0626270:five_prime_UTR
AATCTCGGCAAAACAACTCA+TGG 0.607968 4_3:+5643425 None:intergenic
TCCAGATTCGATAAAATCGA+AGG 0.607979 4_3:+5650302 None:intergenic
TGTGGCCTTTAGAACTATGT+GGG 0.608107 4_3:-5647886 Msa0626270:five_prime_UTR
TACACAGCAATCTAATGCAA+AGG 0.609288 4_3:+5648845 None:intergenic
AGACAGAGATCCCTGCACAA+GGG 0.610395 4_3:+5649098 None:intergenic
ATAACCGCTCAATTTACCAT+CGG 0.613015 4_3:+5645707 None:intergenic
TCACCGCCTACCCTTGTGCA+GGG 0.613107 4_3:-5649108 Msa0626270:five_prime_UTR
AGAGATCCCTGCACAAGGGT+AGG 0.614667 4_3:+5649102 None:intergenic
CCAACTTGAGCTCGAAGATG+AGG 0.614861 4_3:-5648345 Msa0626270:five_prime_UTR
AGAATAAGAAGTAAAACCCA+GGG 0.615034 4_3:-5645681 Msa0626270:five_prime_UTR
AAAATCACTTTGAAGCAGAA+GGG 0.616042 4_3:-5645636 Msa0626270:five_prime_UTR
TAGGAGTCGAAAGTGCCCTA+AGG 0.616121 4_3:+5649739 None:intergenic
TAAGCAGCGCCGTGAGACCG+AGG 0.616463 4_3:-5648752 Msa0626270:five_prime_UTR
AATATGTGATGACATGTTGA+GGG 0.617875 4_3:-5642644 Msa0626270:CDS
CATTGTTTCAGCCAAAGATG+AGG 0.618041 4_3:-5642474 Msa0626270:CDS
AGAGGGTCAGGAGCCATCAA+AGG 0.618049 4_3:-5649232 Msa0626270:five_prime_UTR
TCTGCATTGGAAGGTGAGTG+TGG 0.618873 4_3:-5645807 Msa0626270:five_prime_UTR
GAATATAACTCCAGTTTCAG+TGG 0.619771 4_3:+5648019 None:intergenic
AAGACTCAGAGCAATTCCCT+GGG 0.620234 4_3:+5645665 None:intergenic
AATGGCGCACGTGTCGATGG+AGG 0.622634 4_3:-5643882 Msa0626270:CDS
ATACGGTATTGCAAGATGAG+AGG 0.623355 4_3:-5646161 Msa0626270:five_prime_UTR
TCGGCTTAACGAGCTTAAGA+GGG 0.624554 4_3:-5649799 Msa0626270:five_prime_UTR
CTATGTGGGCTGAGTTTGAG+TGG 0.625334 4_3:-5647872 Msa0626270:five_prime_UTR
TGCGTGTTTCTATCATCACT+AGG 0.626366 4_3:-5649416 Msa0626270:five_prime_UTR
CTGGGTAGCATAGGTCCCAT+CGG 0.628553 4_3:+5649155 None:intergenic
TGTTGCGTCTGCTATGGATG+TGG 0.631879 4_3:-5649478 Msa0626270:five_prime_UTR
GGTTGTTAAGACGCAGAGCG+GGG 0.634964 4_3:-5649625 Msa0626270:five_prime_UTR
ATCCTTTGTAAACTCTCCAG+TGG 0.635004 4_3:+5648301 None:intergenic
CTTTATTTGAGGAATAGTTG+GGG 0.635430 4_3:-5642784 Msa0626270:CDS
GGGAATTGCTCTGAGTCTTG+GGG 0.635580 4_3:-5645661 Msa0626270:five_prime_UTR
ATTCGCAGCCGCTTTAATCG+CGG 0.638162 4_3:+5649881 None:intergenic
ATGACGGTGATGAAGAGTTG+AGG 0.642418 4_3:+5650548 None:intergenic
ATTCCATCTACCCTATACAA+AGG 0.642890 4_3:+5642358 None:intergenic
GGTTGATGACAGTAACATCA+AGG 0.643491 4_3:+5648177 None:intergenic
GAAATCAAAGAATCTCTCGA+AGG 0.643937 4_3:-5650641 Msa0626270:five_prime_UTR
ACCATCTCTGAGGATGGAGA+GGG 0.647823 4_3:-5649249 Msa0626270:five_prime_UTR
TGATGATAGCATTAAACACA+TGG 0.649981 4_3:-5642446 Msa0626270:CDS
TTGTGCTATTAAGTTTCCGG+AGG 0.654288 4_3:-5649550 Msa0626270:five_prime_UTR
TGTTAAGAAACTTCTAGACG+TGG 0.655966 4_3:-5643496 Msa0626270:CDS
GGTGATGAAGAGTTGAGGAA+TGG 0.658642 4_3:+5650553 None:intergenic
AGCATTGAGAAGCAATCCGA+TGG 0.659389 4_3:-5645723 Msa0626270:five_prime_UTR
TACTGTCATCAACCGGACCA+AGG 0.661558 4_3:-5648168 Msa0626270:five_prime_UTR
CGGGGAGCATGAGAAGAATG+GGG 0.661763 4_3:-5649607 Msa0626270:five_prime_UTR
TGATTTCGAGGTAAAGAAGG+AGG 0.662780 4_3:+5650483 None:intergenic
CGACCACTGTGTCTTCTAGG+AGG 0.662950 4_3:-5649191 Msa0626270:five_prime_UTR
GATCCCTGCACAAGGGTAGG+CGG 0.664720 4_3:+5649105 None:intergenic
CATTGAGACCATGATCAACA+AGG 0.665953 4_3:+5648933 None:intergenic
GCGTCCACAAAACTACACTC+TGG 0.667477 4_3:-5648087 Msa0626270:five_prime_UTR
TGATAATGATTCTCATGACA+GGG 0.668331 4_3:-5648872 Msa0626270:five_prime_UTR
TACATGCGACAACTGCCCCA+AGG 0.668408 4_3:+5649031 None:intergenic
CAATCCGATGGTAAATTGAG+CGG 0.668476 4_3:-5645711 Msa0626270:five_prime_UTR
GGAACACTTCCATCTGAGGG+AGG 0.670742 4_3:+5643138 None:intergenic
GAGGTTGTTAAGACGCAGAG+CGG 0.671714 4_3:-5649627 Msa0626270:five_prime_UTR
TCAAGTGATAAAAGTCGATG+AGG 0.671720 4_3:+5648686 None:intergenic
ACTGAGATTGAAGATGCACA+TGG 0.676340 4_3:-5643564 Msa0626270:CDS
TCATCGAAGTTTGAAGACTG+TGG 0.689915 4_3:-5643613 Msa0626270:CDS
TATGTGGGCTGAGTTTGAGT+GGG 0.690862 4_3:-5647871 Msa0626270:five_prime_UTR
TTGATAGGATCATTGATTGG+GGG 0.691639 4_3:-5650070 Msa0626270:five_prime_UTR
ACCGATAAAACCGATTCTCG+CGG 0.697764 4_3:-5650461 Msa0626270:five_prime_UTR
CTTTGTCGAAGTGAACGATG+AGG 0.700062 4_3:+5650684 None:intergenic
GAGCTTTGTGAAGATGCTCG+CGG 0.718610 4_3:-5648776 Msa0626270:five_prime_UTR
TGCCACTGGAGAGTTTACAA+AGG 0.721810 4_3:-5648303 Msa0626270:five_prime_UTR
AGCACATTCATAAACAACAG+CGG 0.738106 4_3:+5649935 None:intergenic
AGGCCTCCTAGAAGACACAG+TGG 0.786866 4_3:+5649188 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTAAAATGGAAAAAT+GGG + chr4_3:5645519-5645538 None:intergenic 10.0%
!! ATAAAAGTTGAAAAAGATTA+TGG - chr4_3:5645459-5645478 Msa0626270:intron 15.0%
!!! ATTTTTAAAATGGAAAAATG+GGG + chr4_3:5645518-5645537 None:intergenic 15.0%
!!! CAATTTTTAAAATGGAAAAA+TGG + chr4_3:5645520-5645539 None:intergenic 15.0%
!!! TTTTCATGCAATTTTTAAAA+TGG + chr4_3:5645528-5645547 None:intergenic 15.0%
!! TAGGATAAATCATATATATA+GGG + chr4_3:5646038-5646057 None:intergenic 15.0%
!! TTAGGATAAATCATATATAT+AGG + chr4_3:5646039-5646058 None:intergenic 15.0%
!!! ATAATTTTATGTTGTTAATG+CGG + chr4_3:5646457-5646476 None:intergenic 15.0%
!!! ATTATTTTCTAAGACAAATT+TGG - chr4_3:5646472-5646491 Msa0626270:intron 15.0%
!!! TTATTTTCTAAGACAAATTT+GGG - chr4_3:5646473-5646492 Msa0626270:intron 15.0%
!! TCCTAAATAAAACAAAAAAT+AGG - chr4_3:5646551-5646570 Msa0626270:intron 15.0%
!!! TCCTATTTTTTGTTTTATTT+AGG + chr4_3:5646555-5646574 None:intergenic 15.0%
!! AAAATAAAATATAGGCAATA+AGG + chr4_3:5647859-5647878 None:intergenic 15.0%
!! GTCTACATAAAATAAAATAT+AGG + chr4_3:5647867-5647886 None:intergenic 15.0%
!! TAAATACTATATTGTATTGT+GGG + chr4_3:5648459-5648478 None:intergenic 15.0%
!! TTAAATACTATATTGTATTG+TGG + chr4_3:5648460-5648479 None:intergenic 15.0%
!!! TTTTAAAATGATTACTAGTT+TGG + chr4_3:5648825-5648844 None:intergenic 15.0%
!!! AAATTTAATCAACTTTTTAG+AGG - chr4_3:5649972-5649991 Msa0626270:five_prime_UTR 15.0%
!!! AATTTAATCAACTTTTTAGA+GGG - chr4_3:5649973-5649992 Msa0626270:five_prime_UTR 15.0%
!! TCAAATATATAGCATAATTA+AGG - chr4_3:5650268-5650287 Msa0626270:five_prime_UTR 15.0%
!!! ATCTTTTTACGAATATTGAT+AGG - chr4_3:5643166-5643185 Msa0626270:CDS 20.0%
!! AATTGATTAAGAAAGTTTGT+AGG - chr4_3:5643229-5643248 Msa0626270:CDS 20.0%
!! AAAGTTTGTAGGAATAATAA+GGG - chr4_3:5643240-5643259 Msa0626270:CDS 20.0%
!! AAAATATAACAAATGAGAGA+AGG + chr4_3:5645429-5645448 None:intergenic 20.0%
!!! GTATTAATACTTTTTTTTCG+TGG - chr4_3:5645749-5645768 Msa0626270:five_prime_UTR 20.0%
!!! TATTTTCTAAGACAAATTTG+GGG - chr4_3:5646474-5646493 Msa0626270:intron 20.0%
!!! TAACATCAATTTTATGTCAT+AGG - chr4_3:5647058-5647077 Msa0626270:intron 20.0%
!! TAAAAAGAAAAACAGAATTC+TGG + chr4_3:5647236-5647255 None:intergenic 20.0%
!!! GAATTCTGTTTTTCTTTTTA+AGG - chr4_3:5647236-5647255 Msa0626270:intron 20.0%
!!! TAAATTTGAAACTAATGAGT+TGG + chr4_3:5647780-5647799 None:intergenic 20.0%
!! GTAAAGAATACAAACAAAAA+TGG + chr4_3:5647815-5647834 None:intergenic 20.0%
!!! TTTTGTTTGTATTCTTTACA+TGG - chr4_3:5647816-5647835 Msa0626270:intron 20.0%
!! GAGATTATGATATCAATATA+TGG + chr4_3:5647903-5647922 None:intergenic 20.0%
!!! ATTATAGTTTTTCACTTGTT+TGG - chr4_3:5648177-5648196 Msa0626270:five_prime_UTR 20.0%
!! ATATGTGTAAAAATGATTGT+AGG - chr4_3:5648293-5648312 Msa0626270:five_prime_UTR 20.0%
!! CATAGAAACATTATAGAATT+TGG + chr4_3:5648399-5648418 None:intergenic 20.0%
!! AAATACTATATTGTATTGTG+GGG + chr4_3:5648458-5648477 None:intergenic 20.0%
!!! TAATGAAATTTGTTGAACAT+AGG - chr4_3:5648586-5648605 Msa0626270:intron 20.0%
!!! AATGAAATTTGTTGAACATA+GGG - chr4_3:5648587-5648606 Msa0626270:intron 20.0%
!! TCAACAAATGTAGTAATAAA+AGG + chr4_3:5648688-5648707 None:intergenic 20.0%
!!! TAATTTTCGAATCTTTAACA+TGG - chr4_3:5648855-5648874 Msa0626270:five_prime_UTR 20.0%
!! TTGAAAATTTGATAGACAAA+TGG - chr4_3:5649712-5649731 Msa0626270:five_prime_UTR 20.0%
!! TGAAAATTTGATAGACAAAT+GGG - chr4_3:5649713-5649732 Msa0626270:five_prime_UTR 20.0%
!! AATATTGTGTTTGAGAAAAT+TGG - chr4_3:5649792-5649811 Msa0626270:five_prime_UTR 20.0%
!! ATACTTTCATTTATCGAATT+TGG - chr4_3:5649864-5649883 Msa0626270:five_prime_UTR 20.0%
!!! ATTTAATCAACTTTTTAGAG+GGG - chr4_3:5649974-5649993 Msa0626270:five_prime_UTR 20.0%
!! AAAAATTAGAATTGTGACAA+AGG - chr4_3:5650007-5650026 Msa0626270:five_prime_UTR 20.0%
!!! TTTTGGAAATATATCTTAGT+TGG - chr4_3:5650210-5650229 Msa0626270:five_prime_UTR 20.0%
!!! TTGTCATTTCTACAATTTAA+AGG - chr4_3:5650370-5650389 Msa0626270:five_prime_UTR 20.0%
!!! TGTCATTTCTACAATTTAAA+GGG - chr4_3:5650371-5650390 Msa0626270:five_prime_UTR 20.0%
!! TTCAAATAAACCTTATAGAT+TGG + chr4_3:5650668-5650687 None:intergenic 20.0%
!!! ATTTTGTCAATTGAAAATGA+TGG - chr4_3:5650695-5650714 Msa0626270:five_prime_UTR 20.0%
!! TAAATATACAACAAAGAGTT+TGG - chr4_3:5650739-5650758 Msa0626270:five_prime_UTR 20.0%
!!! TATGTAATTTTCCTTTGTAT+AGG - chr4_3:5650882-5650901 Msa0626270:five_prime_UTR 20.0%
!!! ATGTAATTTTCCTTTGTATA+GGG - chr4_3:5650883-5650902 Msa0626270:five_prime_UTR 20.0%
! AAGAAAGAAGAAGATGATTT+CGG + chr4_3:5642410-5642429 None:intergenic 25.0%
!! TGTTGAGAAATTTCTTGTTT+CGG - chr4_3:5643071-5643090 Msa0626270:CDS 25.0%
! ATATTGATAGGATCATTGAT+TGG - chr4_3:5643178-5643197 Msa0626270:CDS 25.0%
!! TATTGATAGGATCATTGATT+GGG - chr4_3:5643179-5643198 Msa0626270:CDS 25.0%
! GAAAGTTTGTAGGAATAATA+AGG - chr4_3:5643239-5643258 Msa0626270:CDS 25.0%
! TTCCTTCTAATATCATGATT+AGG + chr4_3:5643534-5643553 None:intergenic 25.0%
! TCATGAGAATCATTATCAAT+TGG + chr4_3:5644377-5644396 None:intergenic 25.0%
! ACTATACCATTCTTAGAAAA+AGG + chr4_3:5644627-5644646 None:intergenic 25.0%
! TGACATTCATATTGATATCA+TGG - chr4_3:5645314-5645333 Msa0626270:intron 25.0%
! TACTTTAGATTCATGATTCA+TGG - chr4_3:5645560-5645579 Msa0626270:intron 25.0%
!! AATATAACTTTAAGAGCACA+GGG + chr4_3:5645611-5645630 None:intergenic 25.0%
! TCATATTGAACTATTGAAGT+TGG - chr4_3:5645719-5645738 Msa0626270:five_prime_UTR 25.0%
!! ATCATCTTACAATTTTACCA+AGG + chr4_3:5645839-5645858 None:intergenic 25.0%
! TATAAGCTGTAAGAATTTCT+AGG - chr4_3:5645917-5645936 Msa0626270:intron 25.0%
! TGTAATAACTACATGAATGA+TGG - chr4_3:5646600-5646619 Msa0626270:intron 25.0%
!!! CTCTAATTTTTTTTCCATGA+AGG - chr4_3:5646670-5646689 Msa0626270:intron 25.0%
!!! TATTTGTAGACTTGATAATG+TGG + chr4_3:5647127-5647146 None:intergenic 25.0%
! ATAAGGTTTACGCAAATTAA+AGG + chr4_3:5647176-5647195 None:intergenic 25.0%
! CCAAATTAAACAAATTGCAT+GGG + chr4_3:5647377-5647396 None:intergenic 25.0%
! ACCAAATTAAACAAATTGCA+TGG + chr4_3:5647378-5647397 None:intergenic 25.0%
! CCAAATTAAACAAATTGCAT+GGG + chr4_3:5647377-5647396 None:intergenic 25.0%
! ACCAAATTAAACAAATTGCA+TGG + chr4_3:5647378-5647397 None:intergenic 25.0%
! AACAAAAATGGAACTTCAAA+GGG + chr4_3:5647803-5647822 None:intergenic 25.0%
! AAACAAAAATGGAACTTCAA+AGG + chr4_3:5647804-5647823 None:intergenic 25.0%
!! ATTTTATGTAGACATGCAAT+TGG - chr4_3:5647874-5647893 Msa0626270:five_prime_UTR 25.0%
!! ATGACAATGACTATTTGTTA+TGG - chr4_3:5647929-5647948 Msa0626270:five_prime_UTR 25.0%
! GCATTATTATCTAAAGACAT+AGG + chr4_3:5647968-5647987 None:intergenic 25.0%
!! TTTTTGTGTGAATGATTAGT+AGG - chr4_3:5647991-5648010 Msa0626270:five_prime_UTR 25.0%
!!! GTTTTTTCTCAAAAAGTTGA+AGG + chr4_3:5648071-5648090 None:intergenic 25.0%
!! TAGTATTTAAGTTTACGTTG+AGG - chr4_3:5648470-5648489 Msa0626270:intron 25.0%
! ACAAATGTAGTAATAAAAGG+AGG + chr4_3:5648685-5648704 None:intergenic 25.0%
!! ATTACTACATTTGTTGAGTT+TGG - chr4_3:5648691-5648710 Msa0626270:five_prime_UTR 25.0%
! TTGAAAAAGAACATCTTTGT+TGG + chr4_3:5648750-5648769 None:intergenic 25.0%
! TTAGATTTCAACATGATGTT+TGG + chr4_3:5648777-5648796 None:intergenic 25.0%
!!! TTTTCAATGTGTTACTCAAT+TGG - chr4_3:5649116-5649135 Msa0626270:five_prime_UTR 25.0%
!! ATTTTCCAAGTTCTTTAACA+CGG - chr4_3:5649526-5649545 Msa0626270:five_prime_UTR 25.0%
! GTTATTAGCATTTAATCTCT+CGG + chr4_3:5649568-5649587 None:intergenic 25.0%
! AGAGATTAAATGCTAATAAC+AGG - chr4_3:5649568-5649587 Msa0626270:five_prime_UTR 25.0%
! TCTCAGTTATTGAAAACTTA+AGG + chr4_3:5649674-5649693 None:intergenic 25.0%
! GAAAATTTGATAGACAAATG+GGG - chr4_3:5649714-5649733 Msa0626270:five_prime_UTR 25.0%
!! TTGTCACTGATTATTGTAAT+AGG - chr4_3:5650150-5650169 Msa0626270:five_prime_UTR 25.0%
! AGAAATGAACTATTTGAAGA+GGG - chr4_3:5650233-5650252 Msa0626270:five_prime_UTR 25.0%
! TAAGGAAGTTGCAATTAATT+TGG - chr4_3:5650286-5650305 Msa0626270:five_prime_UTR 25.0%
!! TTGCAATTAATTTGGATGAT+TGG - chr4_3:5650294-5650313 Msa0626270:five_prime_UTR 25.0%
! TGACAAATTGATATCTTCAT+AGG + chr4_3:5650327-5650346 None:intergenic 25.0%
! TTTCTTGTACATTTCATCAA+AGG + chr4_3:5650573-5650592 None:intergenic 25.0%
! TGTACAAGAAACAATGTAAT+TGG - chr4_3:5650582-5650601 Msa0626270:five_prime_UTR 25.0%
! AGGTATTATACCAATCTATA+AGG - chr4_3:5650655-5650674 Msa0626270:five_prime_UTR 25.0%
ATCTGAAGAAATTGAGAGAT+CGG + chr4_3:5642497-5642516 None:intergenic 30.0%
ATGATTTCTCCATTGTTGAA+AGG + chr4_3:5642543-5642562 None:intergenic 30.0%
! TTCGAGAGATTCTTTGATTT+CGG + chr4_3:5642611-5642630 None:intergenic 30.0%
!! TACGAAGATTTTGACAGATT+AGG + chr4_3:5642837-5642856 None:intergenic 30.0%
GATAAAATCGAAGGAATCAA+CGG + chr4_3:5642943-5642962 None:intergenic 30.0%
AGAAATTTCTCAACAATCTC+AGG + chr4_3:5643066-5643085 None:intergenic 30.0%
! ATTGATAGGATCATTGATTG+GGG - chr4_3:5643180-5643199 Msa0626270:CDS 30.0%
! GATTATGGTTGATATGGTTA+TGG - chr4_3:5643485-5643504 Msa0626270:CDS 30.0%
CTCCTAATCATGATATTAGA+AGG - chr4_3:5643529-5643548 Msa0626270:CDS 30.0%
ACAACCTGATCAATATTCTT+CGG + chr4_3:5643588-5643607 None:intergenic 30.0%
! TACTTGTGCTATTAAGTTTC+CGG - chr4_3:5643698-5643717 Msa0626270:CDS 30.0%
!! CATTTGTTGATGGATTTCTT+GGG - chr4_3:5643741-5643760 Msa0626270:CDS 30.0%
TGGATACTTTCTATCAGATT+CGG - chr4_3:5643862-5643881 Msa0626270:CDS 30.0%
! TGAGTATTGTTTGTCTCTTT+CGG - chr4_3:5643923-5643942 Msa0626270:CDS 30.0%
! CTTGTTAACTTCAACTTTTG+AGG + chr4_3:5644285-5644304 None:intergenic 30.0%
CTCAAAAGTTGAAGTTAACA+AGG - chr4_3:5644283-5644302 Msa0626270:CDS 30.0%
GAATCATTATCAATTGGATG+TGG + chr4_3:5644371-5644390 None:intergenic 30.0%
!! TTGATAATGATTCTCATGAC+AGG - chr4_3:5644378-5644397 Msa0626270:intron 30.0%
! TGATAATGATTCTCATGACA+GGG - chr4_3:5644379-5644398 Msa0626270:intron 30.0%
ATTAGATTGCTGTGTAATAC+TGG - chr4_3:5644413-5644432 Msa0626270:intron 30.0%
!! TTTGCTCCTTTTTCTAAGAA+TGG - chr4_3:5644618-5644637 Msa0626270:intron 30.0%
CATGCAAAACAAAAACTTCA+AGG + chr4_3:5644672-5644691 None:intergenic 30.0%
! AAGTTTAGTGTTTTGTCAGT+TGG - chr4_3:5644778-5644797 Msa0626270:intron 30.0%
! AGTTTAGTGTTTTGTCAGTT+GGG - chr4_3:5644779-5644798 Msa0626270:intron 30.0%
AACTCTCCAGAATTTATGTT+TGG - chr4_3:5645107-5645126 Msa0626270:intron 30.0%
CTAACTCCAAACATAAATTC+TGG + chr4_3:5645116-5645135 None:intergenic 30.0%
ACTGAAACTGGAGTTATATT+CGG - chr4_3:5645234-5645253 Msa0626270:intron 30.0%
ATATAACAAATGAGAGAAGG+AGG + chr4_3:5645426-5645445 None:intergenic 30.0%
TTGCATGAAAAACAACTTCT+AGG - chr4_3:5645537-5645556 Msa0626270:intron 30.0%
TTCATGGTAATCTCTATTAC+TGG - chr4_3:5645576-5645595 Msa0626270:intron 30.0%
TCATGGTAATCTCTATTACT+GGG - chr4_3:5645577-5645596 Msa0626270:intron 30.0%
! ATATAACTTTAAGAGCACAG+GGG + chr4_3:5645610-5645629 None:intergenic 30.0%
! CAATATAACTTTAAGAGCAC+AGG + chr4_3:5645612-5645631 None:intergenic 30.0%
! CTTCGATGATGGTATATTAA+TGG - chr4_3:5645671-5645690 Msa0626270:five_prime_UTR 30.0%
! GATGATGGTATATTAATGGT+TGG - chr4_3:5645675-5645694 Msa0626270:five_prime_UTR 30.0%
! ATCTTACAATTTTACCAAGG+TGG + chr4_3:5645836-5645855 None:intergenic 30.0%
CAGCTTATACATATACCATT+AGG + chr4_3:5645906-5645925 None:intergenic 30.0%
!!! GATTCAGCATGTTACTTTTT+GGG + chr4_3:5645967-5645986 None:intergenic 30.0%
!!! AGATTCAGCATGTTACTTTT+TGG + chr4_3:5645968-5645987 None:intergenic 30.0%
CATTATTGTTATCGTCTCTT+AGG + chr4_3:5646057-5646076 None:intergenic 30.0%
AAGAGACGATAACAATAATG+AGG - chr4_3:5646057-5646076 Msa0626270:intron 30.0%
! TTTATACACTGATGCTTTTC+TGG - chr4_3:5646338-5646357 Msa0626270:intron 30.0%
ACTGTTTCAATGACTCAATT+TGG - chr4_3:5646719-5646738 Msa0626270:intron 30.0%
! AGCTGTGATTCATTCATTTT+TGG + chr4_3:5646812-5646831 None:intergenic 30.0%
! ATTTTTGTAGTTTCCTGCTT+AGG - chr4_3:5646857-5646876 Msa0626270:intron 30.0%
! TTTTTGTAGTTTCCTGCTTA+GGG - chr4_3:5646858-5646877 Msa0626270:intron 30.0%
GAGTAAACAGATTATAGCTA+AGG + chr4_3:5646884-5646903 None:intergenic 30.0%
AATGTATGTAGTTGTAGTAC+AGG - chr4_3:5646931-5646950 Msa0626270:intron 30.0%
! CCCATGCAATTTGTTTAATT+TGG - chr4_3:5647374-5647393 Msa0626270:intron 30.0%
! CCCATGCAATTTGTTTAATT+TGG - chr4_3:5647374-5647393 Msa0626270:intron 30.0%
!!! TGTATGCAAAGAGTGTTTTT+GGG - chr4_3:5647484-5647503 Msa0626270:intron 30.0%
AGAATAAGAAGTAAAACCCA+GGG - chr4_3:5647570-5647589 Msa0626270:intron 30.0%
!! TAAAATCACTTTGAAGCAGA+AGG - chr4_3:5647614-5647633 Msa0626270:intron 30.0%
!! AAAATCACTTTGAAGCAGAA+GGG - chr4_3:5647615-5647634 Msa0626270:intron 30.0%
! ATAGAAGCATGAGAGAAAAT+GGG + chr4_3:5647665-5647684 None:intergenic 30.0%
! TATAGAAGCATGAGAGAAAA+TGG + chr4_3:5647666-5647685 None:intergenic 30.0%
! CTTCAAATTCTTGTGACTTT+TGG - chr4_3:5647748-5647767 Msa0626270:intron 30.0%
TCTAAAGACATAGGAACATA+AGG + chr4_3:5647959-5647978 None:intergenic 30.0%
GGATTATAGCAATTTCTATG+CGG - chr4_3:5648012-5648031 Msa0626270:five_prime_UTR 30.0%
! TCTCTTTTCCTGGAAATTTA+AGG - chr4_3:5648134-5648153 Msa0626270:five_prime_UTR 30.0%
! CTCTTTTCCTGGAAATTTAA+GGG - chr4_3:5648135-5648154 Msa0626270:five_prime_UTR 30.0%
! TCTTTTCCTGGAAATTTAAG+GGG - chr4_3:5648136-5648155 Msa0626270:five_prime_UTR 30.0%
AGACAATGAAATGGAAATAC+AGG + chr4_3:5648342-5648361 None:intergenic 30.0%
TGTATTTCCATTTCATTGTC+TGG - chr4_3:5648341-5648360 Msa0626270:five_prime_UTR 30.0%
TTATTCTCCAGACAATGAAA+TGG + chr4_3:5648351-5648370 None:intergenic 30.0%
TCAAATCAAACAAGAAAGCT+AGG - chr4_3:5648524-5648543 Msa0626270:intron 30.0%
AGTAGAACTTCCTTGAATTT+GGG + chr4_3:5648615-5648634 None:intergenic 30.0%
GCTAGAAGTTAATAACTTTC+TGG + chr4_3:5648905-5648924 None:intergenic 30.0%
TAAATCCATCTCTATGCAAT+TGG - chr4_3:5649020-5649039 Msa0626270:five_prime_UTR 30.0%
! TCATTTTCAGATGTTGAACA+TGG - chr4_3:5649051-5649070 Msa0626270:five_prime_UTR 30.0%
! AAGGATTTGTTTACATTCAG+CGG + chr4_3:5649318-5649337 None:intergenic 30.0%
CAATTCTTGCAATATTCTCA+AGG + chr4_3:5649337-5649356 None:intergenic 30.0%
! TGCTTTTCACAAACTTCTAA+TGG - chr4_3:5649425-5649444 Msa0626270:five_prime_UTR 30.0%
AATTTCTATGCCTCTTTCTT+TGG - chr4_3:5649449-5649468 Msa0626270:five_prime_UTR 30.0%
GTTAATGAAACCAAAGAAAG+AGG + chr4_3:5649462-5649481 None:intergenic 30.0%
AAAATTCAAATCTTGCTTCG+CGG + chr4_3:5649511-5649530 None:intergenic 30.0%
AACAAATTCAACAGCTTGAA+AGG + chr4_3:5649918-5649937 None:intergenic 30.0%
CTCATCACAAGAATTGTTAA+TGG - chr4_3:5650032-5650051 Msa0626270:five_prime_UTR 30.0%
GTGACAAAACTTACCAATTT+AGG + chr4_3:5650137-5650156 None:intergenic 30.0%
GTATAAGCCACAATTGAATA+AGG - chr4_3:5650187-5650206 Msa0626270:five_prime_UTR 30.0%
TCCAAAACCTTATTCAATTG+TGG + chr4_3:5650197-5650216 None:intergenic 30.0%
GAGAAATGAACTATTTGAAG+AGG - chr4_3:5650232-5650251 Msa0626270:five_prime_UTR 30.0%
!! AATTTAAAGGGCACTTTAGT+TGG - chr4_3:5650383-5650402 Msa0626270:five_prime_UTR 30.0%
ACTTTAGTTGGAGATATGAT+GGG - chr4_3:5650395-5650414 Msa0626270:five_prime_UTR 30.0%
CCAACTATTCCTCAAATAAA+GGG + chr4_3:5650468-5650487 None:intergenic 30.0%
! CCTTTATTTGAGGAATAGTT+GGG - chr4_3:5650466-5650485 Msa0626270:five_prime_UTR 30.0%
! CTTTATTTGAGGAATAGTTG+GGG - chr4_3:5650467-5650486 Msa0626270:five_prime_UTR 30.0%
! TTCTATGACTTGTCAAGATT+TGG - chr4_3:5650520-5650539 Msa0626270:five_prime_UTR 30.0%
TAATATGTGATGACATGTTG+AGG - chr4_3:5650606-5650625 Msa0626270:five_prime_UTR 30.0%
AATATGTGATGACATGTTGA+GGG - chr4_3:5650607-5650626 Msa0626270:five_prime_UTR 30.0%
AGAGTTTGGAAAATGAGATT+TGG - chr4_3:5650753-5650772 Msa0626270:five_prime_UTR 30.0%
TGATGATAGCATTAAACACA+TGG - chr4_3:5650805-5650824 Msa0626270:five_prime_UTR 30.0%
CACTACTCAAACGAAATTTA+TGG + chr4_3:5650859-5650878 None:intergenic 30.0%
TCAGATCTCACTGTGATTAT+GGG + chr4_3:5642450-5642469 None:intergenic 35.0%
TTCAGATCTCACTGTGATTA+TGG + chr4_3:5642451-5642470 None:intergenic 35.0%
AGAAATTGAGAGATCGGTTA+TGG + chr4_3:5642491-5642510 None:intergenic 35.0%
AACCTTCAACCTTTCAACAA+TGG - chr4_3:5642531-5642550 Msa0626270:CDS 35.0%
GAAATCAAAGAATCTCTCGA+AGG - chr4_3:5642610-5642629 Msa0626270:CDS 35.0%
! AAGAAGGAGGAGTTTTTGAA+CGG + chr4_3:5642758-5642777 None:intergenic 35.0%
GACAGATTAGGATCATTTCA+GGG + chr4_3:5642825-5642844 None:intergenic 35.0%
TGACAGATTAGGATCATTTC+AGG + chr4_3:5642826-5642845 None:intergenic 35.0%
! TCCTTCGATTTTATCGAATC+TGG - chr4_3:5642948-5642967 Msa0626270:CDS 35.0%
TCCAGATTCGATAAAATCGA+AGG + chr4_3:5642952-5642971 None:intergenic 35.0%
TCTGTTTATAAGCTTCCTCA+AGG - chr4_3:5643018-5643037 Msa0626270:CDS 35.0%
CTGTTTATAAGCTTCCTCAA+GGG - chr4_3:5643019-5643038 Msa0626270:CDS 35.0%
TGTTTATAAGCTTCCTCAAG+GGG - chr4_3:5643020-5643039 Msa0626270:CDS 35.0%
! TTGATAGGATCATTGATTGG+GGG - chr4_3:5643181-5643200 Msa0626270:CDS 35.0%
! ACAGTTACAAATGGTGGTTT+TGG - chr4_3:5643206-5643225 Msa0626270:CDS 35.0%
AGGAATAATAAGGGAGAGAA+AGG - chr4_3:5643249-5643268 Msa0626270:CDS 35.0%
GGAATAATAAGGGAGAGAAA+GGG - chr4_3:5643250-5643269 Msa0626270:CDS 35.0%
AGCACATTCATAAACAACAG+CGG + chr4_3:5643319-5643338 None:intergenic 35.0%
TGAAGCTTATTGTGCTTGAT+CGG - chr4_3:5643433-5643452 Msa0626270:CDS 35.0%
! TAGGGAGATTATGGTTGATA+TGG - chr4_3:5643479-5643498 Msa0626270:CDS 35.0%
ATATGGTTATGGATGTCCTT+AGG - chr4_3:5643496-5643515 Msa0626270:CDS 35.0%
TATGGTTATGGATGTCCTTA+GGG - chr4_3:5643497-5643516 Msa0626270:CDS 35.0%
TACACCGAAGAATATTGATC+AGG - chr4_3:5643581-5643600 Msa0626270:CDS 35.0%
GGTTGTTATGATGCTTAAGA+AGG - chr4_3:5643602-5643621 Msa0626270:CDS 35.0%
TGTTATGATGCTTAAGAAGG+AGG - chr4_3:5643605-5643624 Msa0626270:CDS 35.0%
! TACTGTTGTGCATTTGTTGA+TGG - chr4_3:5643731-5643750 Msa0626270:CDS 35.0%
!! GCATTTGTTGATGGATTTCT+TGG - chr4_3:5643740-5643759 Msa0626270:CDS 35.0%
! TTCTATCATCACTAGGCTTT+TGG - chr4_3:5643842-5643861 Msa0626270:CDS 35.0%
GGATACTTTCTATCAGATTC+GGG - chr4_3:5643863-5643882 Msa0626270:CDS 35.0%
CTTGAGATCTCTGATTCTTT+CGG - chr4_3:5644187-5644206 Msa0626270:CDS 35.0%
TTGAGATCTCTGATTCTTTC+GGG - chr4_3:5644188-5644207 Msa0626270:CDS 35.0%
CACTGACAAAGCTTATCTTA+AGG - chr4_3:5644243-5644262 Msa0626270:CDS 35.0%
GACAAAGCTTATCTTAAGGT+TGG - chr4_3:5644247-5644266 Msa0626270:CDS 35.0%
TACACAGCAATCTAATGCAA+AGG + chr4_3:5644409-5644428 None:intergenic 35.0%
! GTAATACTGGTGATGAGATA+AGG - chr4_3:5644426-5644445 Msa0626270:intron 35.0%
GTGATGAGATAAGGAAGATA+TGG - chr4_3:5644435-5644454 Msa0626270:intron 35.0%
TCAAGTGATAAAAGTCGATG+AGG + chr4_3:5644568-5644587 None:intergenic 35.0%
TTATCACTTGAAGAGCAGAA+AGG - chr4_3:5644577-5644596 Msa0626270:intron 35.0%
! TACCTATATTTGTCGAGTTG+TGG - chr4_3:5644733-5644752 Msa0626270:intron 35.0%
TACCACAACTCGACAAATAT+AGG + chr4_3:5644738-5644757 None:intergenic 35.0%
! GTTTAGTGTTTTGTCAGTTG+GGG - chr4_3:5644780-5644799 Msa0626270:intron 35.0%
! TTTAGTGTTTTGTCAGTTGG+GGG - chr4_3:5644781-5644800 Msa0626270:intron 35.0%
TAAGTGTACTGAGCACATAA+CGG + chr4_3:5644832-5644851 None:intergenic 35.0%
! TCAATCTGTCTATGCTTTTC+AGG - chr4_3:5644876-5644895 Msa0626270:intron 35.0%
! CAATCTGTCTATGCTTTTCA+GGG - chr4_3:5644877-5644896 Msa0626270:intron 35.0%
TTGATGTTACTGTCATCAAC+CGG - chr4_3:5645076-5645095 Msa0626270:intron 35.0%
! TAAATTCTGGAGAGTTTCCT+TGG + chr4_3:5645103-5645122 None:intergenic 35.0%
! ATGTTTGGAGTTAGCAACTA+TGG - chr4_3:5645122-5645141 Msa0626270:intron 35.0%
! TGTTTGGAGTTAGCAACTAT+GGG - chr4_3:5645123-5645142 Msa0626270:intron 35.0%
TTGATCTGTTTGCTTGATTC+TGG + chr4_3:5645192-5645211 None:intergenic 35.0%
AGAATCAAGCAAACAGATCA+AGG - chr4_3:5645191-5645210 Msa0626270:intron 35.0%
GAATATAACTCCAGTTTCAG+TGG + chr4_3:5645235-5645254 None:intergenic 35.0%
GGATCGAAATAAGCAGTAAA+AGG + chr4_3:5645490-5645509 None:intergenic 35.0%
! TATAACTTTAAGAGCACAGG+GGG + chr4_3:5645609-5645628 None:intergenic 35.0%
TGCAATATATGCTTCGATGA+TGG - chr4_3:5645660-5645679 Msa0626270:five_prime_UTR 35.0%
ATACCATTAGGCTACTACTA+GGG + chr4_3:5645894-5645913 None:intergenic 35.0%
TATACCATTAGGCTACTACT+AGG + chr4_3:5645895-5645914 None:intergenic 35.0%
AAATAGAGACGTAAAGGAGT+AGG + chr4_3:5646102-5646121 None:intergenic 35.0%
TACTCCTTTACGTCTCTATT+TGG - chr4_3:5646101-5646120 Msa0626270:intron 35.0%
ACTCCTTTACGTCTCTATTT+GGG - chr4_3:5646102-5646121 Msa0626270:intron 35.0%
TGTTTGCATTTCACTGAGTT+AGG - chr4_3:5646152-5646171 Msa0626270:five_prime_UTR 35.0%
GAGTGATATGCTGATAGATA+TGG - chr4_3:5646298-5646317 Msa0626270:intron 35.0%
ACTTCATGTGAACTCATTAG+AGG + chr4_3:5646639-5646658 None:intergenic 35.0%
CCTATTTATAGCTTCCTTCA+TGG + chr4_3:5646687-5646706 None:intergenic 35.0%
CCATGAAGGAAGCTATAAAT+AGG - chr4_3:5646684-5646703 Msa0626270:intron 35.0%
ATGTAGTTGTAGTACAGGTA+TGG - chr4_3:5646936-5646955 Msa0626270:intron 35.0%
ACAATCATGCTTCTAGATGA+TGG + chr4_3:5646973-5646992 None:intergenic 35.0%
GTCATAGGTTGCTGTAAATA+CGG - chr4_3:5647073-5647092 Msa0626270:intron 35.0%
ACGCAAATTAAAGGAACTCA+CGG + chr4_3:5647167-5647186 None:intergenic 35.0%
ACGCAACAATAACAGTCATA+AGG + chr4_3:5647193-5647212 None:intergenic 35.0%
AATTCTGGTAGTAGATAGTC+AGG + chr4_3:5647221-5647240 None:intergenic 35.0%
TTATGGGCACTTCATTGTTT+AGG + chr4_3:5647289-5647308 None:intergenic 35.0%
TGAATCCCACAATCAGTTAT+GGG + chr4_3:5647305-5647324 None:intergenic 35.0%
ATGAATCCCACAATCAGTTA+TGG + chr4_3:5647306-5647325 None:intergenic 35.0%
! TTGCTGTGCTTGATTTGATT+TGG - chr4_3:5647349-5647368 Msa0626270:intron 35.0%
!!! CTGTATGCAAAGAGTGTTTT+TGG - chr4_3:5647483-5647502 Msa0626270:intron 35.0%
!!! GTATGCAAAGAGTGTTTTTG+GGG - chr4_3:5647485-5647504 Msa0626270:intron 35.0%
ATAACCGCTCAATTTACCAT+CGG + chr4_3:5647547-5647566 None:intergenic 35.0%
CAGAATAAGAAGTAAAACCC+AGG - chr4_3:5647569-5647588 Msa0626270:intron 35.0%
! CAAATTCTTGTGACTTTTGG+TGG - chr4_3:5647751-5647770 Msa0626270:intron 35.0%
!! CAATGACTATTTGTTATGGC+TGG - chr4_3:5647933-5647952 Msa0626270:five_prime_UTR 35.0%
TCATTTCCCCTTAAATTTCC+AGG + chr4_3:5648145-5648164 None:intergenic 35.0%
TGGAAATTTAAGGGGAAATG+AGG - chr4_3:5648144-5648163 Msa0626270:five_prime_UTR 35.0%
TAAGTGCAGTTTAGTAGTCA+TGG - chr4_3:5648266-5648285 Msa0626270:five_prime_UTR 35.0%
AAGTGCAGTTTAGTAGTCAT+GGG - chr4_3:5648267-5648286 Msa0626270:five_prime_UTR 35.0%
CAGTAGAACTTCCTTGAATT+TGG + chr4_3:5648616-5648635 None:intergenic 35.0%
AAGGAAGTTCTACTGCTTAT+TGG - chr4_3:5648621-5648640 Msa0626270:intron 35.0%
! TTGAGTTTGGTGAAAGAAAG+TGG - chr4_3:5648704-5648723 Msa0626270:five_prime_UTR 35.0%
GATTACAGCTTCTTAACCAA+AGG - chr4_3:5648974-5648993 Msa0626270:five_prime_UTR 35.0%
ACTTTCCAATTGCATAGAGA+TGG + chr4_3:5649028-5649047 None:intergenic 35.0%
TTCTTCAAGCTTCTTTGTGT+TGG + chr4_3:5649190-5649209 None:intergenic 35.0%
! AGGATTTGTTTACATTCAGC+GGG + chr4_3:5649317-5649336 None:intergenic 35.0%
AACTTCCGTGTTAAAGAACT+TGG + chr4_3:5649534-5649553 None:intergenic 35.0%
TTCTTTAACACGGAAGTTAC+AGG - chr4_3:5649536-5649555 Msa0626270:five_prime_UTR 35.0%
ACTGTGTATGTTGAAATTCG+TGG - chr4_3:5649606-5649625 Msa0626270:five_prime_UTR 35.0%
TCTTAACAACCAACTCCAAA+TGG + chr4_3:5649743-5649762 None:intergenic 35.0%
TGTTAAGAAACTTCTAGACG+TGG - chr4_3:5649755-5649774 Msa0626270:five_prime_UTR 35.0%
TTGGAAAGATTGTTACTGAG+AGG - chr4_3:5649883-5649902 Msa0626270:five_prime_UTR 35.0%
!! AGATGGAAGTGTTCCTAAAT+TGG - chr4_3:5650121-5650140 Msa0626270:five_prime_UTR 35.0%
! GCCACAATTGAATAAGGTTT+TGG - chr4_3:5650193-5650212 Msa0626270:five_prime_UTR 35.0%
CACTTTAGTTGGAGATATGA+TGG - chr4_3:5650394-5650413 Msa0626270:five_prime_UTR 35.0%
! CCCTTTATTTGAGGAATAGT+TGG - chr4_3:5650465-5650484 Msa0626270:five_prime_UTR 35.0%
CCCAACTATTCCTCAAATAA+AGG + chr4_3:5650469-5650488 None:intergenic 35.0%
GGAAAACATATGCAAGCATT+TGG - chr4_3:5650628-5650647 Msa0626270:five_prime_UTR 35.0%
AAACATATGCAAGCATTTGG+TGG - chr4_3:5650631-5650650 Msa0626270:five_prime_UTR 35.0%
! GTCAATTGAAAATGATGGTG+TGG - chr4_3:5650700-5650719 Msa0626270:five_prime_UTR 35.0%
TTTCCTTTGTATAGGGTAGA+TGG - chr4_3:5650890-5650909 Msa0626270:five_prime_UTR 35.0%
ATTCCATCTACCCTATACAA+AGG + chr4_3:5650896-5650915 None:intergenic 35.0%
AAGGTTGAAGGTTTCAGATC+TGG + chr4_3:5642524-5642543 None:intergenic 40.0%
CTCCATTGTTGAAAGGTTGA+AGG + chr4_3:5642536-5642555 None:intergenic 40.0%
GCAATCATGCTTCTCCTTAA+CGG - chr4_3:5642670-5642689 Msa0626270:CDS 40.0%
TGATTTCGAGGTAAAGAAGG+AGG + chr4_3:5642771-5642790 None:intergenic 40.0%
TCACCGAACGAATTTATTCG+CGG - chr4_3:5642868-5642887 Msa0626270:CDS 40.0%
ACACCGCGAATAAATTCGTT+CGG + chr4_3:5642874-5642893 None:intergenic 40.0%
! TGATAGGATCATTGATTGGG+GGG - chr4_3:5643182-5643201 Msa0626270:CDS 40.0%
! GCTGTTGTTTATGAATGTGC+TGG - chr4_3:5643318-5643337 Msa0626270:CDS 40.0%
ACGAGCTTAAGAGGGATAAT+AGG - chr4_3:5643460-5643479 Msa0626270:CDS 40.0%
CGAGCTTAAGAGGGATAATA+GGG - chr4_3:5643461-5643480 Msa0626270:CDS 40.0%
GAGGGATAATAGGGAGATTA+TGG - chr4_3:5643470-5643489 Msa0626270:CDS 40.0%
! ATGAGAAGAATGGGGAGTAT+AGG - chr4_3:5643652-5643671 Msa0626270:CDS 40.0%
! TTGTGCTATTAAGTTTCCGG+AGG - chr4_3:5643701-5643720 Msa0626270:CDS 40.0%
TACAAATGTTGCGTCTGCTA+TGG - chr4_3:5643767-5643786 Msa0626270:CDS 40.0%
TGATAGAAACACGCAGCTTA+GGG + chr4_3:5643830-5643849 None:intergenic 40.0%
ATGATAGAAACACGCAGCTT+AGG + chr4_3:5643831-5643850 None:intergenic 40.0%
! TGCGTGTTTCTATCATCACT+AGG - chr4_3:5643835-5643854 Msa0626270:CDS 40.0%
! TCTTGTGCTCTGTGGATTAT+TGG - chr4_3:5643900-5643919 Msa0626270:CDS 40.0%
GTATTGTTTGTCTCTTTCGG+AGG - chr4_3:5643926-5643945 Msa0626270:CDS 40.0%
GCAACTATTAAGCAGTGTCT+TGG - chr4_3:5643963-5643982 Msa0626270:CDS 40.0%
TCCTCAGAGATGGTGTAAAA+GGG + chr4_3:5643996-5644015 None:intergenic 40.0%
ATCCTCAGAGATGGTGTAAA+AGG + chr4_3:5643997-5644016 None:intergenic 40.0%
!! TTTTACACCATCTCTGAGGA+TGG - chr4_3:5643996-5644015 Msa0626270:CDS 40.0%
AGGGATCTCTGTCTTCTATT+GGG - chr4_3:5644162-5644181 Msa0626270:CDS 40.0%
! TTTCGGGTGATTTCTTCCTT+GGG - chr4_3:5644204-5644223 Msa0626270:CDS 40.0%
GCTTATCTTAAGGTTGGAAG+AGG - chr4_3:5644253-5644272 Msa0626270:CDS 40.0%
TTCACAGTCCTTGTTGATCA+TGG - chr4_3:5644310-5644329 Msa0626270:CDS 40.0%
CATTGAGACCATGATCAACA+AGG + chr4_3:5644321-5644340 None:intergenic 40.0%
TGAGATAAGGAAGATATGGC+TGG - chr4_3:5644439-5644458 Msa0626270:intron 40.0%
TGCCTTTGCTTTAATCTCCT+CGG + chr4_3:5644519-5644538 None:intergenic 40.0%
TAAAAGTCGATGAGGTCATC+AGG + chr4_3:5644560-5644579 None:intergenic 40.0%
! TGAAGAGCAGAAAGGTATGA+TGG - chr4_3:5644585-5644604 Msa0626270:intron 40.0%
ATCCTTTGTAAACTCTCCAG+TGG + chr4_3:5644953-5644972 None:intergenic 40.0%
ACATATGCTTCAGCATAGAC+AGG + chr4_3:5645030-5645049 None:intergenic 40.0%
!! GGTTGATGACAGTAACATCA+AGG + chr4_3:5645077-5645096 None:intergenic 40.0%
AGTGGAAGAAACCTTGATGT+TGG + chr4_3:5645217-5645236 None:intergenic 40.0%
AAGGTTTCTTCCACTGAAAC+TGG - chr4_3:5645222-5645241 Msa0626270:intron 40.0%
!! ATGTGGCCTTTAGAACTATG+TGG - chr4_3:5645364-5645383 Msa0626270:intron 40.0%
!! TGTGGCCTTTAGAACTATGT+GGG - chr4_3:5645365-5645384 Msa0626270:intron 40.0%
TGAGTTTGAGTGGGAAAACA+AGG - chr4_3:5645389-5645408 Msa0626270:intron 40.0%
TTACTGCTTATTTCGATCCC+TGG - chr4_3:5645491-5645510 Msa0626270:intron 40.0%
TACTGCTTATTTCGATCCCT+GGG - chr4_3:5645492-5645511 Msa0626270:intron 40.0%
ATTGCAAACAGAACGATGTC+AGG + chr4_3:5645646-5645665 None:intergenic 40.0%
TACCATTAGGCTACTACTAG+GGG + chr4_3:5645893-5645912 None:intergenic 40.0%
!!! TACTTTTTGGGTGCAATGAC+AGG + chr4_3:5645955-5645974 None:intergenic 40.0%
ATAGGGAACACACAACACAA+AGG + chr4_3:5646021-5646040 None:intergenic 40.0%
ACACCCAAATAGAGACGTAA+AGG + chr4_3:5646108-5646127 None:intergenic 40.0%
TGCCTGTAGCTATTCAAAGT+GGG + chr4_3:5646256-5646275 None:intergenic 40.0%
ATGCCTGTAGCTATTCAAAG+TGG + chr4_3:5646257-5646276 None:intergenic 40.0%
CAGCATATCACTCATACTGT+GGG + chr4_3:5646291-5646310 None:intergenic 40.0%
TCAGCATATCACTCATACTG+TGG + chr4_3:5646292-5646311 None:intergenic 40.0%
! TGAATGATGGAAATCACCCT+AGG - chr4_3:5646613-5646632 Msa0626270:intron 40.0%
GAAGGAAGCTATAAATAGGC+AGG - chr4_3:5646688-5646707 Msa0626270:intron 40.0%
TCAATTTGGTCCTGTCTTGA+TGG - chr4_3:5646733-5646752 Msa0626270:intron 40.0%
CAATTTGGTCCTGTCTTGAT+GGG - chr4_3:5646734-5646753 Msa0626270:intron 40.0%
! GATTCTGAGAAAGCTACAGA+TGG + chr4_3:5646772-5646791 None:intergenic 40.0%
! CTTCTAGATGATGGCCAATT+TGG + chr4_3:5646964-5646983 None:intergenic 40.0%
! TCTAGAAGCATGATTGTGAC+AGG - chr4_3:5646976-5646995 Msa0626270:intron 40.0%
! CTAGAAGCATGATTGTGACA+GGG - chr4_3:5646977-5646996 Msa0626270:intron 40.0%
ATACGGTATTGCAAGATGAG+AGG - chr4_3:5647090-5647109 Msa0626270:intron 40.0%
TACGGTATTGCAAGATGAGA+GGG - chr4_3:5647091-5647110 Msa0626270:intron 40.0%
CAAATTAAAGGAACTCACGG+TGG + chr4_3:5647164-5647183 None:intergenic 40.0%
AAGTGCCCATAACTGATTGT+GGG - chr4_3:5647297-5647316 Msa0626270:intron 40.0%
CAATCCGATGGTAAATTGAG+CGG - chr4_3:5647540-5647559 Msa0626270:intron 40.0%
GTAGTTTACAGCTTCAAGCT+TGG - chr4_3:5647714-5647733 Msa0626270:intron 40.0%
!!! TTGTGCTGTTTCTCTTTTCC+TGG - chr4_3:5648124-5648143 Msa0626270:five_prime_UTR 40.0%
! GTTCTACTGCTTATTGGTTG+AGG - chr4_3:5648627-5648646 Msa0626270:intron 40.0%
GGATTTAAGTGAAGCTTGCA+AGG + chr4_3:5649007-5649026 None:intergenic 40.0%
ATTGCAAGTTAGCAACCAGT+TGG - chr4_3:5649232-5649251 Msa0626270:five_prime_UTR 40.0%
!! AAAAGCACTTCTCAACCAAC+TGG + chr4_3:5649250-5649269 None:intergenic 40.0%
ATTCAGCGGGTAAAACTCAT+TGG + chr4_3:5649304-5649323 None:intergenic 40.0%
TCATCGAAGTTTGAAGACTG+TGG - chr4_3:5649638-5649657 Msa0626270:five_prime_UTR 40.0%
ACTGAGATTGAAGATGCACA+TGG - chr4_3:5649687-5649706 Msa0626270:five_prime_UTR 40.0%
AGACAAATGGGGAAACCATT+TGG - chr4_3:5649725-5649744 Msa0626270:five_prime_UTR 40.0%
AATCTCGGCAAAACAACTCA+TGG + chr4_3:5649829-5649848 None:intergenic 40.0%
! TGCCGAGATTGCTATTGAAT+CGG - chr4_3:5649839-5649858 Msa0626270:five_prime_UTR 40.0%
TCCCGATTCAATAGCAATCT+CGG + chr4_3:5649844-5649863 None:intergenic 40.0%
TTAGGAACACTTCCATCTGA+GGG + chr4_3:5650119-5650138 None:intergenic 40.0%
TTTAGGAACACTTCCATCTG+AGG + chr4_3:5650120-5650139 None:intergenic 40.0%
! GAGATATGATGGGAGATTCA+TGG - chr4_3:5650405-5650424 Msa0626270:five_prime_UTR 40.0%
! ACTATGCAGCCCTTTATTTG+AGG - chr4_3:5650456-5650475 Msa0626270:five_prime_UTR 40.0%
! ATATGCAAGCATTTGGTGGA+AGG - chr4_3:5650635-5650654 Msa0626270:five_prime_UTR 40.0%
CATTGTTTCAGCCAAAGATG+AGG - chr4_3:5650777-5650796 Msa0626270:five_prime_UTR 40.0%
TCATCATGCTTCCTCATCTT+TGG + chr4_3:5650791-5650810 None:intergenic 40.0%
CTTTGTCGAAGTGAACGATG+AGG + chr4_3:5642570-5642589 None:intergenic 45.0%
CTCATCGTTCACTTCGACAA+AGG - chr4_3:5642568-5642587 Msa0626270:CDS 45.0%
GGTGATGAAGAGTTGAGGAA+TGG + chr4_3:5642701-5642720 None:intergenic 45.0%
ATGACGGTGATGAAGAGTTG+AGG + chr4_3:5642706-5642725 None:intergenic 45.0%
CGGTGATTTCGAGGTAAAGA+AGG + chr4_3:5642774-5642793 None:intergenic 45.0%
!! CGGTTTTATCGGTGATTTCG+AGG + chr4_3:5642783-5642802 None:intergenic 45.0%
! ACCGATAAAACCGATTCTCG+CGG - chr4_3:5642790-5642809 Msa0626270:CDS 45.0%
!! ACCGCGAGAATCGGTTTTAT+CGG + chr4_3:5642794-5642813 None:intergenic 45.0%
GAGAACTTTACCGCGAGAAT+CGG + chr4_3:5642803-5642822 None:intergenic 45.0%
AGCAAGATGCTTCGAGTAAG+AGG - chr4_3:5643094-5643113 Msa0626270:CDS 45.0%
TTGGGGGGAACAGTTACAAA+TGG - chr4_3:5643197-5643216 Msa0626270:CDS 45.0%
! ATCGGCTTAACGAGCTTAAG+AGG - chr4_3:5643451-5643470 Msa0626270:CDS 45.0%
TCGGCTTAACGAGCTTAAGA+GGG - chr4_3:5643452-5643471 Msa0626270:CDS 45.0%
TGCTATTAAGTTTCCGGAGG+TGG - chr4_3:5643704-5643723 Msa0626270:CDS 45.0%
!! TGGATGTGGTTGTTTTCGTG+CGG - chr4_3:5643787-5643806 Msa0626270:CDS 45.0%
! TCCCTTTTACACCATCTCTG+AGG - chr4_3:5643992-5644011 Msa0626270:CDS 45.0%
CAGGGATCTCTGTCTTCTAT+TGG - chr4_3:5644161-5644180 Msa0626270:CDS 45.0%
! CTTTCGGGTGATTTCTTCCT+TGG - chr4_3:5644203-5644222 Msa0626270:CDS 45.0%
TTCGGGTGATTTCTTCCTTG+GGG - chr4_3:5644205-5644224 Msa0626270:CDS 45.0%
CTTTAATCTCCTCGGTCTCA+CGG + chr4_3:5644511-5644530 None:intergenic 45.0%
GACCGAGGAGATTAAAGCAA+AGG - chr4_3:5644514-5644533 Msa0626270:intron 45.0%
GCTCAGTACACTTACTCATC+TGG - chr4_3:5644838-5644857 Msa0626270:intron 45.0%
TGCCACTGGAGAGTTTACAA+AGG - chr4_3:5644948-5644967 Msa0626270:intron 45.0%
AATCGCATTCTTCAGCTCAC+TGG - chr4_3:5644994-5645013 Msa0626270:intron 45.0%
ATCGCATTCTTCAGCTCACT+GGG - chr4_3:5644995-5645014 Msa0626270:intron 45.0%
ACAGATCAAGGCCAACATCA+AGG - chr4_3:5645203-5645222 Msa0626270:intron 45.0%
!! CTCAGCCCACATAGTTCTAA+AGG + chr4_3:5645373-5645392 None:intergenic 45.0%
! TATGTGGGCTGAGTTTGAGT+GGG - chr4_3:5645380-5645399 Msa0626270:intron 45.0%
ACAAATGAGAGAAGGAGGAG+AGG + chr4_3:5645421-5645440 None:intergenic 45.0%
AAATGGAAAAATGGGGCCCA+GGG + chr4_3:5645511-5645530 None:intergenic 45.0%
AAAATGGAAAAATGGGGCCC+AGG + chr4_3:5645512-5645531 None:intergenic 45.0%
! GAAAGTACGCGTACAGAAGT+TGG + chr4_3:5645814-5645833 None:intergenic 45.0%
CGTCTCTATTTGGGTGTGAA+AGG - chr4_3:5646111-5646130 Msa0626270:five_prime_UTR 45.0%
CTATTTGGGTGTGAAAGGAG+AGG - chr4_3:5646116-5646135 Msa0626270:five_prime_UTR 45.0%
GTGAAAGGAGAGGTAGATCT+CGG - chr4_3:5646126-5646145 Msa0626270:five_prime_UTR 45.0%
TAATGTGTGATGCTGCTGTC+TGG - chr4_3:5646223-5646242 Msa0626270:intron 45.0%
AATGTGTGATGCTGCTGTCT+GGG - chr4_3:5646224-5646243 Msa0626270:intron 45.0%
TGCCCACTTTGAATAGCTAC+AGG - chr4_3:5646251-5646270 Msa0626270:intron 45.0%
!! ACACTGATGCTTTTCTGGCA+AGG - chr4_3:5646343-5646362 Msa0626270:intron 45.0%
GTGAACTCATTAGAGGCCTA+GGG + chr4_3:5646632-5646651 None:intergenic 45.0%
TGTGAACTCATTAGAGGCCT+AGG + chr4_3:5646633-5646652 None:intergenic 45.0%
TTATAGCTAAGGCCCTAAGC+AGG + chr4_3:5646873-5646892 None:intergenic 45.0%
! GTACAGGTATGGTGCCAAAT+TGG - chr4_3:5646947-5646966 Msa0626270:intron 45.0%
!! TAGACTTGATAATGTGGCCC+AGG + chr4_3:5647121-5647140 None:intergenic 45.0%
! GAAGTGCCCATAACTGATTG+TGG - chr4_3:5647296-5647315 Msa0626270:intron 45.0%
TCTCTTGTTCAGCTCTGCAT+TGG - chr4_3:5647431-5647450 Msa0626270:intron 45.0%
TTGTTCAGCTCTGCATTGGA+AGG - chr4_3:5647435-5647454 Msa0626270:intron 45.0%
!!! TGTTTTTGGGGAAGATGCTC+TGG - chr4_3:5647497-5647516 Msa0626270:intron 45.0%
! AGCATTGAGAAGCAATCCGA+TGG - chr4_3:5647528-5647547 Msa0626270:intron 45.0%
AAGACTCAGAGCAATTCCCT+GGG + chr4_3:5647589-5647608 None:intergenic 45.0%
! AGGGAATTGCTCTGAGTCTT+GGG - chr4_3:5647589-5647608 Msa0626270:intron 45.0%
! ACATAGGGTGCCCAAATTCA+AGG - chr4_3:5648602-5648621 Msa0626270:intron 45.0%
CTTGCAAGGACAAACACCTT+TGG + chr4_3:5648993-5649012 None:intergenic 45.0%
GAATTGCAAGCCCTAGAGAA+TGG - chr4_3:5649351-5649370 Msa0626270:five_prime_UTR 45.0%
! ATGGGGAAACCATTTGGAGT+TGG - chr4_3:5649731-5649750 Msa0626270:five_prime_UTR 45.0%
! GCCGAGATTGCTATTGAATC+GGG - chr4_3:5649840-5649859 Msa0626270:five_prime_UTR 45.0%
TTGATTTCGGTTGCGAGTGC+TGG + chr4_3:5642598-5642617 None:intergenic 50.0%
GAGGAATGGTTTCGCCGTTA+AGG + chr4_3:5642687-5642706 None:intergenic 50.0%
!! AGTGAGGACGTAACGGATGA+CGG + chr4_3:5642722-5642741 None:intergenic 50.0%
CATCGCAAGTGAGGACGTAA+CGG + chr4_3:5642729-5642748 None:intergenic 50.0%
ACAGCGTTTCGTCTCACGAA+AGG + chr4_3:5642985-5643004 None:intergenic 50.0%
GGGGGAACAGTTACAAATGG+TGG - chr4_3:5643200-5643219 Msa0626270:CDS 50.0%
! ATTCGCAGCCGCTTTAATCG+CGG + chr4_3:5643373-5643392 None:intergenic 50.0%
!! TAGGAGTCGAAAGTGCCCTA+AGG + chr4_3:5643515-5643534 None:intergenic 50.0%
GAGGTTGTTAAGACGCAGAG+CGG - chr4_3:5643624-5643643 Msa0626270:CDS 50.0%
AGGTTGTTAAGACGCAGAGC+GGG - chr4_3:5643625-5643644 Msa0626270:CDS 50.0%
! TGGGGAGTATAGGCAGATGT+TGG - chr4_3:5643662-5643681 Msa0626270:CDS 50.0%
GTATAGGCAGATGTTGGTGC+AGG - chr4_3:5643668-5643687 Msa0626270:CDS 50.0%
TGTTGCGTCTGCTATGGATG+TGG - chr4_3:5643773-5643792 Msa0626270:CDS 50.0%
!! GGATGTGGTTGTTTTCGTGC+GGG - chr4_3:5643788-5643807 Msa0626270:CDS 50.0%
TCTATCAGATTCGGGCTGCT+AGG - chr4_3:5643871-5643890 Msa0626270:CDS 50.0%
CTATCAGATTCGGGCTGCTA+GGG - chr4_3:5643872-5643891 Msa0626270:CDS 50.0%
! GGGTTTGTTCTTGTGCTCTG+TGG - chr4_3:5643892-5643911 Msa0626270:CDS 50.0%
TCTCTTTCGGAGGTTGAGAG+TGG - chr4_3:5643936-5643955 Msa0626270:CDS 50.0%
! ACCATCTCTGAGGATGGAGA+GGG - chr4_3:5644002-5644021 Msa0626270:CDS 50.0%
ACTCGACCACTGTGTCTTCT+AGG - chr4_3:5644057-5644076 Msa0626270:CDS 50.0%
AGTCTCAAGAGCAGCACTCT+GGG + chr4_3:5644117-5644136 None:intergenic 50.0%
AGACAGAGATCCCTGCACAA+GGG + chr4_3:5644156-5644175 None:intergenic 50.0%
AAGACAGAGATCCCTGCACA+AGG + chr4_3:5644157-5644176 None:intergenic 50.0%
ATGGTCTCAATGCTGCAGCT+TGG - chr4_3:5644329-5644348 Msa0626270:CDS 50.0%
AGATATGGCTGGAATCCTGC+AGG - chr4_3:5644450-5644469 Msa0626270:intron 50.0%
! GAGCTTTGTGAAGATGCTCG+CGG - chr4_3:5644475-5644494 Msa0626270:intron 50.0%
CCTCATCTTCGAGCTCAAGT+TGG + chr4_3:5644909-5644928 None:intergenic 50.0%
CCAACTTGAGCTCGAAGATG+AGG - chr4_3:5644906-5644925 Msa0626270:intron 50.0%
GACGATCTTAAACGTGCCAC+TGG - chr4_3:5644934-5644953 Msa0626270:intron 50.0%
TACTGTCATCAACCGGACCA+AGG - chr4_3:5645083-5645102 Msa0626270:intron 50.0%
TCTGGAGAGTTTCCTTGGTC+CGG + chr4_3:5645098-5645117 None:intergenic 50.0%
GCGTCCACAAAACTACACTC+TGG - chr4_3:5645164-5645183 Msa0626270:intron 50.0%
!! GGAGCCAGAGTGTAGTTTTG+TGG + chr4_3:5645171-5645190 None:intergenic 50.0%
! TCCTGCATCTTGTGCTGATG+TGG - chr4_3:5645347-5645366 Msa0626270:intron 50.0%
! CTATGTGGGCTGAGTTTGAG+TGG - chr4_3:5645379-5645398 Msa0626270:intron 50.0%
TGTACGCGTACTTTCCACCT+TGG - chr4_3:5645819-5645838 Msa0626270:intron 50.0%
GTCCCCTAGTAGTAGCCTAA+TGG - chr4_3:5645888-5645907 Msa0626270:intron 50.0%
AAAGGAGAGGTAGATCTCGG+TGG - chr4_3:5646129-5646148 Msa0626270:five_prime_UTR 50.0%
TTTCCCAAGCCCATCAAGAC+AGG + chr4_3:5646746-5646765 None:intergenic 50.0%
CAAGATGAGAGGGAGTTCCT+GGG - chr4_3:5647101-5647120 Msa0626270:intron 50.0%
TCTGCATTGGAAGGTGAGTG+TGG - chr4_3:5647444-5647463 Msa0626270:intron 50.0%
CAAGACTCAGAGCAATTCCC+TGG + chr4_3:5647590-5647609 None:intergenic 50.0%
! CAGGGAATTGCTCTGAGTCT+TGG - chr4_3:5647588-5647607 Msa0626270:intron 50.0%
! GGGAATTGCTCTGAGTCTTG+GGG - chr4_3:5647590-5647609 Msa0626270:intron 50.0%
TCTTGAGAGGGAAAGTTGGC+AGG + chr4_3:5648432-5648451 None:intergenic 50.0%
GTGCTCTTGAGAGGGAAAGT+TGG + chr4_3:5648436-5648455 None:intergenic 50.0%
! ATTGTGGGGTGCTCTTGAGA+GGG + chr4_3:5648444-5648463 None:intergenic 50.0%
! TATTGTGGGGTGCTCTTGAG+AGG + chr4_3:5648445-5648464 None:intergenic 50.0%
CGGTGTGATCATCGCAAGTG+AGG + chr4_3:5642738-5642757 None:intergenic 55.0%
TCAAGCAACTGCTCCCCTTG+AGG + chr4_3:5643036-5643055 None:intergenic 55.0%
! TGCACCGACCGCGATTAAAG+CGG - chr4_3:5643362-5643381 Msa0626270:CDS 55.0%
GGTTGTTAAGACGCAGAGCG+GGG - chr4_3:5643626-5643645 Msa0626270:CDS 55.0%
! AGCGGGGAGCATGAGAAGAA+TGG - chr4_3:5643642-5643661 Msa0626270:CDS 55.0%
! GCGGGGAGCATGAGAAGAAT+GGG - chr4_3:5643643-5643662 Msa0626270:CDS 55.0%
! CGGGGAGCATGAGAAGAATG+GGG - chr4_3:5643644-5643663 Msa0626270:CDS 55.0%
ACAACAGTACTCGCCACCTC+CGG + chr4_3:5643720-5643739 None:intergenic 55.0%
! CACCATCTCTGAGGATGGAG+AGG - chr4_3:5644001-5644020 Msa0626270:CDS 55.0%
ACCCTCTCCATCCTCAGAGA+TGG + chr4_3:5644006-5644025 None:intergenic 55.0%
AGAGGGTCAGGAGCCATCAA+AGG - chr4_3:5644019-5644038 Msa0626270:CDS 55.0%
ACCTGCTGCACAGCCTTTGA+TGG + chr4_3:5644035-5644054 None:intergenic 55.0%
CGACCACTGTGTCTTCTAGG+AGG - chr4_3:5644060-5644079 Msa0626270:CDS 55.0%
AGGCCTCCTAGAAGACACAG+TGG + chr4_3:5644066-5644085 None:intergenic 55.0%
CTGGGTAGCATAGGTCCCAT+CGG + chr4_3:5644099-5644118 None:intergenic 55.0%
AGCAGCACTCTGGGTAGCAT+AGG + chr4_3:5644108-5644127 None:intergenic 55.0%
CAGTCTCAAGAGCAGCACTC+TGG + chr4_3:5644118-5644137 None:intergenic 55.0%
AGAGATCCCTGCACAAGGGT+AGG + chr4_3:5644152-5644171 None:intergenic 55.0%
TACATGCGACAACTGCCCCA+AGG + chr4_3:5644223-5644242 None:intergenic 55.0%
CTTCACAAAGCTCTGCCTGC+AGG + chr4_3:5644468-5644487 None:intergenic 55.0%
GAGGTCATCAGGCTGTGCAT+TGG + chr4_3:5644549-5644568 None:intergenic 55.0%
TGAGCTCGAAGATGAGGTGC+AGG - chr4_3:5644912-5644931 Msa0626270:intron 55.0%
GCCACATCAGCACAAGATGC+AGG + chr4_3:5645351-5645370 None:intergenic 55.0%
!! TGGTCCTGTCTTGATGGGCT+TGG - chr4_3:5646739-5646758 Msa0626270:intron 55.0%
!! GGTCCTGTCTTGATGGGCTT+GGG - chr4_3:5646740-5646759 Msa0626270:intron 55.0%
GCAAGATGAGAGGGAGTTCC+TGG - chr4_3:5647100-5647119 Msa0626270:intron 55.0%
AAGGAACTCACGGTGGAGTC+AGG + chr4_3:5647157-5647176 None:intergenic 55.0%
GACACGTGCGCCATTCTCTA+GGG + chr4_3:5649364-5649383 None:intergenic 55.0%
CCATCTGAGGGAGGACATGT+TGG + chr4_3:5650107-5650126 None:intergenic 55.0%
CCAACATGTCCTCCCTCAGA+TGG - chr4_3:5650104-5650123 Msa0626270:five_prime_UTR 55.0%
GGAACACTTCCATCTGAGGG+AGG + chr4_3:5650116-5650135 None:intergenic 55.0%
CGCGGTCGGTGCAGAACTAA+GGG + chr4_3:5643355-5643374 None:intergenic 60.0%
TCGCGGTCGGTGCAGAACTA+AGG + chr4_3:5643356-5643375 None:intergenic 60.0%
! GCAGCCGCTTTAATCGCGGT+CGG + chr4_3:5643369-5643388 None:intergenic 60.0%
! CTCTGAGGATGGAGAGGGTC+AGG - chr4_3:5644007-5644026 Msa0626270:CDS 60.0%
GCCATCAAAGGCTGTGCAGC+AGG - chr4_3:5644031-5644050 Msa0626270:CDS 60.0%
AGGCCTGCGATTCTTGCCGA+TGG - chr4_3:5644080-5644099 Msa0626270:CDS 60.0%
GGCCTGCGATTCTTGCCGAT+GGG - chr4_3:5644081-5644100 Msa0626270:CDS 60.0%
GTCCCATCGGCAAGAATCGC+AGG + chr4_3:5644086-5644105 None:intergenic 60.0%
CACAAGGGTAGGCGGTGACA+TGG + chr4_3:5644141-5644160 None:intergenic 60.0%
TCACCGCCTACCCTTGTGCA+GGG - chr4_3:5644143-5644162 Msa0626270:CDS 60.0%
GATCCCTGCACAAGGGTAGG+CGG + chr4_3:5644149-5644168 None:intergenic 60.0%
CGACACGTGCGCCATTCTCT+AGG + chr4_3:5649365-5649384 None:intergenic 60.0%
GAGAATGGCGCACGTGTCGA+TGG - chr4_3:5649366-5649385 Msa0626270:five_prime_UTR 60.0%
! AATGGCGCACGTGTCGATGG+AGG - chr4_3:5649369-5649388 Msa0626270:five_prime_UTR 60.0%
GTCACCGCCTACCCTTGTGC+AGG - chr4_3:5644142-5644161 Msa0626270:CDS 65.0%
TAAGCAGCGCCGTGAGACCG+AGG - chr4_3:5644499-5644518 Msa0626270:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 5642348 5650925 5642348 ID=Msa0626270;Name=Msa0626270
chr4_3 mRNA 5642348 5650925 5642348 ID=Msa0626270-mRNA-1;Parent=Msa0626270;Name=Msa0626270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=3058|0.75|0.6|1|0.5|0.4|5|0|683
chr4_3 exon 5642348 5644391 5642348 ID=Msa0626270-mRNA-1:exon:1588;Parent=Msa0626270-mRNA-1
chr4_3 exon 5645615 5645830 5645615 ID=Msa0626270-mRNA-1:exon:1587;Parent=Msa0626270-mRNA-1
chr4_3 exon 5646108 5646193 5646108 ID=Msa0626270-mRNA-1:exon:1586;Parent=Msa0626270-mRNA-1
chr4_3 exon 5647863 5648375 5647863 ID=Msa0626270-mRNA-1:exon:1585;Parent=Msa0626270-mRNA-1
chr4_3 exon 5648675 5650925 5648675 ID=Msa0626270-mRNA-1:exon:1584;Parent=Msa0626270-mRNA-1
chr4_3 five_prime_UTR 5648675 5650925 5648675 ID=Msa0626270-mRNA-1:five_prime_utr;Parent=Msa0626270-mRNA-1
chr4_3 five_prime_UTR 5647863 5648375 5647863 ID=Msa0626270-mRNA-1:five_prime_utr;Parent=Msa0626270-mRNA-1
chr4_3 five_prime_UTR 5646108 5646193 5646108 ID=Msa0626270-mRNA-1:five_prime_utr;Parent=Msa0626270-mRNA-1
chr4_3 five_prime_UTR 5645623 5645830 5645623 ID=Msa0626270-mRNA-1:five_prime_utr;Parent=Msa0626270-mRNA-1
chr4_3 CDS 5645615 5645622 5645615 ID=Msa0626270-mRNA-1:cds;Parent=Msa0626270-mRNA-1
chr4_3 CDS 5642348 5644391 5642348 ID=Msa0626270-mRNA-1:cds;Parent=Msa0626270-mRNA-1
Gene Sequence

>Msa0626270

ATGCAATTCAAAGAAAACATTGAAGCTACCAGAAAGTTATTAACTTCTAGCTTAGAAACATCAATAGCTATTTCTTCTGCATTAGATGAGTCTAGTTCAAGATTACAGCTTCTTAACCAAAGGTGTTTGTCCTTGCAAGCTTCACTTAAATCCATCTCTATGCAATTGGAAAGTCTTTCATTTTCAGATGTTGAACATGGTATAGACAGTGTTCTATGTTCTGTTTCAGCAGTTCTCAAAGTTTTTCAATGTGTTACTCAATTGGAACATTCTCTTTCAATAGACGCGTGTTCTGATTTACTCACATATGTCTCCAACACAAAGAAGCTTGAAGAATCATTGAAGCTTCTCACTGATAATTGCAAGTTAGCAACCAGTTGGTTGAGAAGTGCTTTTGAGTTTTTACAAGACAAAACAACAATTAGTACCAATGAGTTTTACCCGCTGAATGTAAACAAATCCTTGAGAATATTGCAAGAATTGCAAGCCCTAGAGAATGGCGCACGTGTCGATGGAGGAATTCTCAGTATTGCTTTTGACAAACTAGAGATTGCTTTTCACAAACTTCTAATGGAAATTTCTATGCCTCTTTCTTTGGTTTCATTAACATCACACGTTGATCAACAAAACAACGCCGCGAAGCAAGATTTGAATTTTCCAAGTTCTTTAACACGGAAGTTACAGGTCATCGCCGAGAGATTAAATGCTAATAACAGGCTAGAAAAGTGTCAAACTGTGTATGTTGAAATTCGTGGAACGAATGCTCATCGAAGTTTGAAGACTGTGGACTTAAGCTACCTTAAGTTTTCAATAACTGAGATTGAAGATGCACATGGAATTGAAAATTTGATAGACAAATGGGGAAACCATTTGGAGTTGGTTGTTAAGAAACTTCTAGACGTGGAGCACAAGCTATGCAATATTGTGTTTGAGAAAATTGGTTCAGAAGCATCCATGAGTTGTTTTGCCGAGATTGCTATTGAATCGGGAATACTTTCATTTATCGAATTTGGAAAGATTGTTACTGAGAGGAAAAATGATCCTTTCAAGCTGTTGAATTTGTTGTCAATGTTTAAAGTCTTGAATGATTTAAGACTAAAATTTAATCAACTTTTTAGAGGGGAAGCTTGTGAAAAAATTAGAATTGTGACAAAGGATCTCATCACAAGAATTGTTAATGGTGCTAGTGAGATATTCTTGCAACTCGCAGAACAAGTGAAGTTGCAAAGACCAACATGTCCTCCCTCAGATGGAAGTGTTCCTAAATTGGTAAGTTTTGTCACTGATTATTGTAATAGGCTTCTTAGTGATGAGTATAAGCCACAATTGAATAAGGTTTTGGAAATATATCTTAGTTGGAGAAATGAACTATTTGAAGAGGGTATTTTTGTTACTCAAATATATAGCATAATTAAGGAAGTTGCAATTAATTTGGATGATTGGTCAAAAGCCTATGAAGATATCAATTTGTCATATTTTTTCATGATGAATAATCATTGTCATTTCTACAATTTAAAGGGCACTTTAGTTGGAGATATGATGGGAGATTCATGGTTAAGAGCACATGAACAATATAAAGAGTACTATGCAGCCCTTTATTTGAGGAATAGTTGGGGAAATCTTCAAAATATTCTTGTAGTTTCATCTTCTATGACTTGTCAAGATTTGGTTAAGAGAATAAATGCTTTTAGTCTAGCCTTTGATGAAATGTACAAGAAACAATGTAATTGGATAATATGTGATGACATGTTGAGGGAAAACATATGCAAGCATTTGGTGGAAGGTATTATACCAATCTATAAGGTTTATTTGAAGAATTACATTTTGTCAATTGAAAATGATGGTGTGGTTGATAAGCATTTTATTAAATATACAACAAAGAGTTTGGAAAATGAGATTTGGTCATTGTTTCAGCCAAAGATGAGGAAGCATGATGATAGCATTAAACACATGGATTTGATTAGTAAAATAAAAGAATTTAGCCATAAATTTCGTTTGAGTAGTGCACTATGTAATTTTCCTTTGTATAGGGTAGATGGAATGTTGATCTAA
Protein sequence

>Msa0626270

MQFKENIEATRKLLTSSLETSIAISSALDESSSRLQLLNQRCLSLQASLKSISMQLESLSFSDVEHGIDSVLCSVSAVLKVFQCVTQLEHSLSIDACSDLLTYVSNTKKLEESLKLLTDNCKLATSWLRSAFEFLQDKTTISTNEFYPLNVNKSLRILQELQALENGARVDGGILSIAFDKLEIAFHKLLMEISMPLSLVSLTSHVDQQNNAAKQDLNFPSSLTRKLQVIAERLNANNRLEKCQTVYVEIRGTNAHRSLKTVDLSYLKFSITEIEDAHGIENLIDKWGNHLELVVKKLLDVEHKLCNIVFEKIGSEASMSCFAEIAIESGILSFIEFGKIVTERKNDPFKLLNLLSMFKVLNDLRLKFNQLFRGEACEKIRIVTKDLITRIVNGASEIFLQLAEQVKLQRPTCPPSDGSVPKLVSFVTDYCNRLLSDEYKPQLNKVLEIYLSWRNELFEEGIFVTQIYSIIKEVAINLDDWSKAYEDINLSYFFMMNNHCHFYNLKGTLVGDMMGDSWLRAHEQYKEYYAALYLRNSWGNLQNILVVSSSMTCQDLVKRINAFSLAFDEMYKKQCNWIICDDMLRENICKHLVEGIIPIYKVYLKNYILSIENDGVVDKHFIKYTTKSLENEIWSLFQPKMRKHDDSIKHMDLISKIKEFSHKFRLSSALCNFPLYRVDGMLI*