AlfalfaGEDB | Msa0673430

M. sativa cultivar zhongmu-4 / Msa0673430

KEGG: K14018
GO: GO:0001558 GO:0002237 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006508 GO:0006511 GO:0006629 GO:0006631 GO:0006690 GO:0006692 GO:0006693 GO:0006807 GO:0006914 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009892 GO:0009987 GO:0010033 GO:0010517 GO:0010518 GO:0010605 GO:0010720 GO:0010975 GO:0010976 GO:0016236 GO:0019222 GO:0019538 GO:0019752 GO:0019941 GO:0022008 GO:0022603 GO:0022604 GO:0030154 GO:0030163 GO:0030307 GO:0030334 GO:0030335 GO:0031323 GO:0031324 GO:0031344 GO:0031346 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032429 GO:0032430 GO:0032496 GO:0032501 GO:0032502 GO:0032787 GO:0032879 GO:0033559 GO:0033993 GO:0040008 GO:0040012 GO:0040017 GO:0042221 GO:0043085 GO:0043162 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0045202 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0051960 GO:0051962 GO:0060191 GO:0060193 GO:0060255 GO:0060284 GO:0060341 GO:0061919 GO:0065007 GO:0065009 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071396 GO:0071704 GO:0080090 GO:0098693 GO:0120035 GO:1900044 GO:1900045 GO:1901564 GO:1901565 GO:1901568 GO:1901575 GO:1901700 GO:1901701 GO:1902914 GO:1902915 GO:1903320 GO:1903321 GO:1903421 GO:1903423 GO:1903859 GO:1903861 GO:2000026 GO:2000145 GO:2000147 GO:2001222 GO:2001224
PFAM: PF00400.35

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0673430	XP_039689069.1	63.594	434	137	10	1	429	4	421	2.57e-166	496

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0673430	sp\|Q6GM65\|PLAP_XENLA	32.177	317	202	7	5	313	13	324	3.97e-32	132

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0673430	A0A396I8G4	61.099	455	140	11	1	429	4	447	5.56e-163	487

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0074700	Msa0673430	0.800077	1.707135e-48	-8.615850e-47
Msa0486120	Msa0673430	0.807344	5.291239e-50	-8.615850e-47
Msa0634750	Msa0673430	0.831639	1.489451e-55	-8.615850e-47
Msa0673430	Msa0885280	0.807857	4.118531e-50	-8.615850e-47
Msa0673430	Msa1411020	0.805305	1.423559e-49	-8.615850e-47
Msa0673430	Msa1420490	0.805348	1.394445e-49	-8.615850e-47
Msa0673430	Msa1423390	0.803326	3.678003e-49	-8.615850e-47
Msa0673430	Msa1424290	0.810055	1.393862e-50	-8.615850e-47
Msa0673430	Msa1434350	0.803503	3.379133e-49	-8.615850e-47
Msa0673430	Msa1439320	0.802115	6.538441e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0673430	MtrunA17_Chr4g0019701	61.099	455	140	11	1	429	4	447	1.07e-166	487
Msa0673430	MtrunA17_Chr4g0034491	56.010	416	129	7	3	371	6	414	3.29e-136	408
Msa0673430	MtrunA17_Chr4g0067151	29.675	246	138	14	31	256	93	323	3.69e-15	76.3
Msa0673430	MtrunA17_Chr4g0053651	26.715	277	165	11	31	284	304	565	5.17e-11	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0673430	AT3G18860.1	45.673	416	166	11	5	369	10	416	3.58e-102	320
Msa0673430	AT3G18860.2	45.673	416	166	11	5	369	10	416	3.89e-102	320
Msa0673430	AT3G49660.1	28.750	240	146	11	31	256	86	314	1.11e-16	80.9
Msa0673430	AT4G02730.1	29.048	210	124	9	63	256	131	331	5.03e-12	67.4

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Find 144 sgRNAs with CRISPR-Local

Find 825 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATGAACAGAAGTTG+CGG	0.642478	4_4:-19717355	Msa0673430:intron
AAAAGAACTGTATCTTCACA+TGG	0.643864	4_4:+19716534	None:intergenic
AAAATCTAAATTATGACAAA+TGG	0.405422	4_4:+19716577	None:intergenic
AAACACTATGGTGAAGTTTG+CGG	0.520593	4_4:-19728392	Msa0673430:CDS
AAAGTTTGTTTACATACTTT+TGG	0.365514	4_4:-19727176	Msa0673430:CDS
AACCCTACTTTGAAAAGCGG+TGG	0.631203	4_4:-19728212	Msa0673430:CDS
AACGTGTCGGTGAACACACA+AGG	0.632426	4_4:+19716865	None:intergenic
AACTTACAACGCATCGTAGA+CGG	0.490006	4_4:+19723936	None:intergenic
AAGATTGACAAAGTTGCTGT+TGG	0.455460	4_4:-19725566	Msa0673430:CDS
AAGTTGCCATTCAACAAATC+AGG	0.472764	4_4:-19725369	Msa0673430:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTAGGAATAATGATGTGT+TGG	-	chr4_4:19716741-19716760	Msa0673430:intron	30.0%
TTGTTTCATCTTCTATGGAT+GGG	-	chr4_4:19716848-19716867	Msa0673430:three_prime_UTR	30.0%
TACACTTATTATTCTCGTGT+TGG	+	chr4_4:19717029-19717048	None:intergenic	30.0%
GTTGTGTAGATTCTTTAGTA+AGG	-	chr4_4:19717099-19717118	Msa0673430:intron	30.0%
ATAGCAATAATGTTTCCTTG+TGG	-	chr4_4:19717960-19717979	Msa0673430:intron	30.0%
AAGATCGTTTGGCAAAAATA+TGG	-	chr4_4:19718396-19718415	Msa0673430:intron	30.0%
ATTAATTCTTAAGCTCCCTA+AGG	+	chr4_4:19718523-19718542	None:intergenic	30.0%
TGTCTTTATGAAGTTTATGG+GGG	-	chr4_4:19718550-19718569	Msa0673430:intron	30.0%
AAGCAGATTCTTACAACTTA+TGG	+	chr4_4:19718624-19718643	None:intergenic	30.0%
GCTTGATATTGTATTCTCTT+TGG	-	chr4_4:19718640-19718659	Msa0673430:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	19716489	19728454	19716489	ID=Msa0673430;Name=Msa0673430
chr4_4	mRNA	19716489	19728454	19716489	ID=Msa0673430-mRNA-1;Parent=Msa0673430;Name=Msa0673430-mRNA-1;_AED=0.27;_eAED=0.27;_QI=7\|0.93\|0.87\|1\|1\|1\|16\|535\|429
chr4_4	exon	19716489	19716743	19716489	ID=Msa0673430-mRNA-1:exon:5720;Parent=Msa0673430-mRNA-1
chr4_4	exon	19716839	19716919	19716839	ID=Msa0673430-mRNA-1:exon:5719;Parent=Msa0673430-mRNA-1
chr4_4	exon	19717295	19717363	19717295	ID=Msa0673430-mRNA-1:exon:5718;Parent=Msa0673430-mRNA-1
chr4_4	exon	19720951	19721028	19720951	ID=Msa0673430-mRNA-1:exon:5717;Parent=Msa0673430-mRNA-1
chr4_4	exon	19721690	19721743	19721690	ID=Msa0673430-mRNA-1:exon:5716;Parent=Msa0673430-mRNA-1
chr4_4	exon	19722811	19722864	19722811	ID=Msa0673430-mRNA-1:exon:5715;Parent=Msa0673430-mRNA-1
chr4_4	exon	19723217	19723294	19723217	ID=Msa0673430-mRNA-1:exon:5714;Parent=Msa0673430-mRNA-1
chr4_4	exon	19723943	19723993	19723943	ID=Msa0673430-mRNA-1:exon:5713;Parent=Msa0673430-mRNA-1
chr4_4	exon	19725370	19725426	19725370	ID=Msa0673430-mRNA-1:exon:5712;Parent=Msa0673430-mRNA-1
chr4_4	exon	19725516	19725585	19725516	ID=Msa0673430-mRNA-1:exon:5711;Parent=Msa0673430-mRNA-1
chr4_4	exon	19725701	19725912	19725701	ID=Msa0673430-mRNA-1:exon:5710;Parent=Msa0673430-mRNA-1
chr4_4	exon	19726521	19726660	19726521	ID=Msa0673430-mRNA-1:exon:5709;Parent=Msa0673430-mRNA-1
chr4_4	exon	19726767	19726827	19726767	ID=Msa0673430-mRNA-1:exon:5708;Parent=Msa0673430-mRNA-1
chr4_4	exon	19727165	19727251	19727165	ID=Msa0673430-mRNA-1:exon:5707;Parent=Msa0673430-mRNA-1
chr4_4	exon	19727391	19727494	19727391	ID=Msa0673430-mRNA-1:exon:5706;Parent=Msa0673430-mRNA-1
chr4_4	exon	19728074	19728454	19728074	ID=Msa0673430-mRNA-1:exon:5705;Parent=Msa0673430-mRNA-1
chr4_4	five_prime_UTR	19728448	19728454	19728448	ID=Msa0673430-mRNA-1:five_prime_utr;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19728074	19728447	19728074	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19727391	19727494	19727391	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19727165	19727251	19727165	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19726767	19726827	19726767	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19726521	19726660	19726521	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19725701	19725912	19725701	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19725516	19725585	19725516	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19725370	19725426	19725370	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19723943	19723993	19723943	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19723217	19723294	19723217	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19722811	19722864	19722811	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	CDS	19721742	19721743	19721742	ID=Msa0673430-mRNA-1:cds;Parent=Msa0673430-mRNA-1
chr4_4	three_prime_UTR	19721690	19721741	19721690	ID=Msa0673430-mRNA-1:three_prime_utr;Parent=Msa0673430-mRNA-1
chr4_4	three_prime_UTR	19720951	19721028	19720951	ID=Msa0673430-mRNA-1:three_prime_utr;Parent=Msa0673430-mRNA-1
chr4_4	three_prime_UTR	19717295	19717363	19717295	ID=Msa0673430-mRNA-1:three_prime_utr;Parent=Msa0673430-mRNA-1
chr4_4	three_prime_UTR	19716839	19716919	19716839	ID=Msa0673430-mRNA-1:three_prime_utr;Parent=Msa0673430-mRNA-1
chr4_4	three_prime_UTR	19716489	19716743	19716489	ID=Msa0673430-mRNA-1:three_prime_utr;Parent=Msa0673430-mRNA-1

Gene Sequence

>Msa0673430

ATGACTGAGAATTACAGATTACGCTCTACACTCAAACACTATGGTGAAGTTTGCGGAATAGCCGTCTGCGGCAACACTTACACCGACAAAATAGTCACCTCATCTTATGACGGATTGATTAGGATTTGGACAGGTCACGGCGAAGACCTGTGGAAACCATCTCTTCTTACTCCACCTCATTGTACCGTCCGATGTATGTCATGGATTCCACCGAACCCTACTTTGAAAAGCGGTGGTGTTTCTGGTTGTAGGAATAATGATGTGTTGGTTTGGGACGTGGATAGTGGTAAGTTGGTGCAGAGACTAAATCATGAATCGCAGGTTACTGGTATTGTGGTTGATGGGGATGATCTTGTTTCATCTTCTATGGATGGTACTTTGAAGAGGTGGAGGAATTGGGAATGCACGGAGACATGGACGACTCACGAGGGTCCAATTCAAGCAGTTATAAAGCTACCCACAGGAGAGCTTGTTACAGGTTCAAGTCCCATTTTAGGTTCAAGGGACTCTATTTTAAAGATCTGGAAGGGCAAAGTTTGTTTACATACTTTTGGTGGACATACAGATACTGTTTGTGGCTTGGCTGCGACGTCTGATTGTGGAATCCTATCTGCATCCCATGATGGTTCTCTCAGATTATGGGCATTAAATGGTCATGAGGTAATGAACATGTCTGGCCATACTGCAACTGTTTGTTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGTAGCGAAGATCGTTTGGCAAAAATATGGAAAGAATCAGTTTGTGCTCAGAGCATAGAGCATCCTGGTTTCGTTTGGGATACAAAATTTATGGAAAACGGGGATATTGTGACAGCATGTTCCGATGGAGTTGTACGCATTTGGACCGCAAATCAGAATCATTTTGCTGGCCAGCGAGAACTTGATTTATACACTTTGCAACTTTCTATTAACAAGTCAATGCACAAAATAATGAAATTGGATAACATTGACAAAGTTGCTGTTGGATCGGAAGAATCAAATCGTCCTTCTATCGATGGTGTTCAGCATGATTATGTGATTGATACGAGTGGATTTGGTAGGCAATACGGGAAGTTGCCATTCAACAAATCAGAAGTTGCTGAGAAGCCAAAAGTAAAGGGCGTAGACCCGTCTACGATGCGTTTTCGTCCGTCTAGTAATATGGGGGATATGACAGATCATTGGAATGAACAATATAAGGCTATGATTAAAGAAAAAAAAAAAGTTGCTGAGAAGCCAGAAGTAAAGTGCGTAGTGTATACCGACCCGATGCGTTAA

Protein sequence

>Msa0673430

MTENYRLRSTLKHYGEVCGIAVCGNTYTDKIVTSSYDGLIRIWTGHGEDLWKPSLLTPPHCTVRCMSWIPPNPTLKSGGVSGCRNNDVLVWDVDSGKLVQRLNHESQVTGIVVDGDDLVSSSMDGTLKRWRNWECTETWTTHEGPIQAVIKLPTGELVTGSSPILGSRDSILKIWKGKVCLHTFGGHTDTVCGLAATSDCGILSASHDGSLRLWALNGHEVMNMSGHTATVCSVDSHASGLIVSGSEDRLAKIWKESVCAQSIEHPGFVWDTKFMENGDIVTACSDGVVRIWTANQNHFAGQRELDLYTLQLSINKSMHKIMKLDNIDKVAVGSEESNRPSIDGVQHDYVIDTSGFGRQYGKLPFNKSEVAEKPKVKGVDPSTMRFRPSSNMGDMTDHWNEQYKAMIKEKKKVAEKPEVKCVVYTDPMR*