Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673610 | XP_003605528.1 | 95.980 | 199 | 5 | 2 | 1 | 196 | 1 | 199 | 1.97e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673610 | sp|Q5P316|RL18_AROAE | 31.818 | 110 | 73 | 2 | 87 | 195 | 9 | 117 | 1.26e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673610 | G7JN88 | 95.980 | 199 | 5 | 2 | 1 | 196 | 1 | 199 | 9.42e-134 | 382 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103780 | Msa0673610 | 0.803188 | 3.926447e-49 | -8.615850e-47 |
| Msa0640880 | Msa0673610 | 0.804093 | 2.549055e-49 | -8.615850e-47 |
| Msa0673610 | Msa0681890 | 0.814656 | 1.378972e-51 | -8.615850e-47 |
| Msa0673610 | Msa0726440 | 0.833834 | 4.247138e-56 | -8.615850e-47 |
| Msa0673610 | Msa0758860 | 0.831972 | 1.232419e-55 | -8.615850e-47 |
| Msa0673610 | Msa1131470 | 0.800316 | 1.526279e-48 | -8.615850e-47 |
| Msa0146470 | Msa0673610 | 0.800692 | 1.279133e-48 | -8.615850e-47 |
| Msa0524090 | Msa0673610 | 0.800692 | 1.279023e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673610 | MtrunA17_Chr4g0014331 | 95.980 | 199 | 5 | 2 | 1 | 196 | 1 | 199 | 1.81e-137 | 382 |
| Msa0673610 | MtrunA17_Chr3g0081601 | 46.154 | 117 | 62 | 1 | 78 | 193 | 64 | 180 | 4.93e-31 | 111 |
| Msa0673610 | MtrunA17_Chr5g0394471 | 38.739 | 111 | 68 | 0 | 83 | 193 | 226 | 336 | 1.23e-21 | 90.5 |
| Msa0673610 | MtrunA17_Chr1g0211791 | 32.990 | 97 | 65 | 0 | 97 | 193 | 15 | 111 | 3.83e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673610 | AT3G20230.1 | 66.460 | 161 | 51 | 1 | 36 | 196 | 29 | 186 | 3.84e-78 | 232 |
| Msa0673610 | AT1G08845.1 | 41.322 | 121 | 71 | 0 | 73 | 193 | 62 | 182 | 2.82e-29 | 107 |
| Msa0673610 | AT1G08845.3 | 41.322 | 121 | 71 | 0 | 73 | 193 | 62 | 182 | 2.82e-29 | 107 |
| Msa0673610 | AT1G08845.2 | 41.322 | 121 | 71 | 0 | 73 | 193 | 107 | 227 | 3.71e-29 | 108 |
| Msa0673610 | AT5G27820.1 | 34.021 | 97 | 64 | 0 | 97 | 193 | 15 | 111 | 7.57e-18 | 75.9 |
| Msa0673610 | AT3G22450.1 | 39.655 | 116 | 69 | 1 | 79 | 193 | 175 | 290 | 6.28e-15 | 72.0 |
| Msa0673610 | AT3G22450.2 | 39.655 | 116 | 69 | 1 | 79 | 193 | 175 | 290 | 6.28e-15 | 72.0 |
Find 50 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGGATTGTTGGAGTTT+GGG | 0.214382 | 4_4:-20209407 | None:intergenic |
| CCTGAAGCTTGTAGAGTAAT+TGG | 0.243088 | 4_4:+20212253 | Msa0673610:CDS |
| ACTTTGGGATTGTTGGAGTT+TGG | 0.258651 | 4_4:-20209408 | None:intergenic |
| CGCTTCCATGATTTCCTGCT+GGG | 0.263722 | 4_4:-20212073 | None:intergenic |
| TTGTGTTTGTTCTCTCTTCT+CGG | 0.282120 | 4_4:+20212598 | Msa0673610:three_prime_UTR |
| TCAATCCTTTCATTCTTTCT+CGG | 0.316725 | 4_4:-20212331 | None:intergenic |
| CCGCTTCCATGATTTCCTGC+TGG | 0.319690 | 4_4:-20212074 | None:intergenic |
| CCAATTACTCTACAAGCTTC+AGG | 0.324712 | 4_4:-20212253 | None:intergenic |
| AAGAGAGTTTCGAAGATCTT+TGG | 0.330634 | 4_4:-20212215 | None:intergenic |
| CTAAAACAACATAAGCTGAT+AGG | 0.343285 | 4_4:-20212419 | None:intergenic |
| CTTGATACTGTTAAAGAAAA+CGG | 0.356290 | 4_4:+20212373 | Msa0673610:CDS |
| AGTGGTTGTTGAGATAGAAA+TGG | 0.382473 | 4_4:-20209376 | None:intergenic |
| TTGATACTGTTAAAGAAAAC+GGG | 0.383944 | 4_4:+20212374 | Msa0673610:CDS |
| AAACTAGGCGTATAAATATA+CGG | 0.387668 | 4_4:-20212552 | None:intergenic |
| TGAAAGGATTGAAGGTAGAC+TGG | 0.403984 | 4_4:+20212342 | Msa0673610:CDS |
| TGTGTTTGTTCTCTCTTCTC+GGG | 0.431642 | 4_4:+20212599 | Msa0673610:three_prime_UTR |
| TTTGGGATTGTTGGAGTTTG+GGG | 0.432854 | 4_4:-20209406 | None:intergenic |
| TCGAAGATCTTTGGCGTTTG+TGG | 0.436613 | 4_4:-20212206 | None:intergenic |
| AGAACGTACTTTGGGATTGT+TGG | 0.443819 | 4_4:-20209415 | None:intergenic |
| GTGGTTGTTGAGATAGAAAT+GGG | 0.449297 | 4_4:-20209375 | None:intergenic |
| AGAAACCCAGCAGGAAATCA+TGG | 0.462560 | 4_4:+20212068 | Msa0673610:CDS |
| GGATCAATGTCCACACTTAG+TGG | 0.463833 | 4_4:+20212620 | Msa0673610:three_prime_UTR |
| GAGATAGAAATGGGTAAAGA+AGG | 0.473587 | 4_4:-20209366 | None:intergenic |
| AGAAAGAATGAAAGGATTGA+AGG | 0.478137 | 4_4:+20212334 | Msa0673610:CDS |
| TAAAACAACATAAGCTGATA+GGG | 0.487166 | 4_4:-20212418 | None:intergenic |
| GTACATTCATTCGAGCTGCT+TGG | 0.492460 | 4_4:+20212017 | Msa0673610:CDS |
| GTAGTGAGAAGAAGAAGAAG+TGG | 0.493620 | 4_4:+20209209 | Msa0673610:five_prime_UTR |
| TTGGGATTGTTGGAGTTTGG+GGG | 0.510893 | 4_4:-20209405 | None:intergenic |
| CTTGAAAATGAAAGCGAAGT+CGG | 0.521163 | 4_4:-20209336 | None:intergenic |
| TGATAACGAGTTGTGTTGGT+TGG | 0.525995 | 4_4:+20209235 | Msa0673610:CDS |
| AGCGAAGTCGGAGACGAAGA+AGG | 0.528230 | 4_4:-20209324 | None:intergenic |
| ACAAGCTTCAGGATCTATCA+AGG | 0.541521 | 4_4:-20212242 | None:intergenic |
| GATAACGAGTTGTGTTGGTT+GGG | 0.544905 | 4_4:+20209236 | Msa0673610:CDS |
| TCTGTTGCGATAATAAGCTT+CGG | 0.552339 | 4_4:+20209286 | Msa0673610:CDS |
| TGCTCTTCTCTAAACAGCAA+AGG | 0.559161 | 4_4:+20209184 | Msa0673610:five_prime_UTR |
| GCTTCAGGATCTATCAAGGA+TGG | 0.567230 | 4_4:-20212238 | None:intergenic |
| CCAGCAGGAAATCATGGAAG+CGG | 0.573597 | 4_4:+20212074 | Msa0673610:CDS |
| ATGAACCGAGAAAGAATGAA+AGG | 0.579896 | 4_4:+20212326 | Msa0673610:CDS |
| GATGTGTCCATAAAACATCA+AGG | 0.585366 | 4_4:-20212517 | None:intergenic |
| GAAAGGATTGAAGGTAGACT+GGG | 0.594965 | 4_4:+20212343 | Msa0673610:CDS |
| GCTTATTGCAGAGCGATCAA+AGG | 0.597674 | 4_4:+20212279 | Msa0673610:CDS |
| AAGCTTGTAGAGTAATTGGA+AGG | 0.614586 | 4_4:+20212257 | Msa0673610:CDS |
| GGAAGCTGATGTATATGCAA+TGG | 0.615199 | 4_4:+20212300 | Msa0673610:CDS |
| AAGCTGAAAAGAAACCCAGC+AGG | 0.616349 | 4_4:+20212059 | Msa0673610:CDS |
| GAAATGATAACGAGTTGTGT+TGG | 0.616458 | 4_4:+20209231 | Msa0673610:exon |
| GCTTGGACTCGAAGATCTCG+AGG | 0.620097 | 4_4:+20212034 | Msa0673610:CDS |
| ACACTTAGTGGTATACTCAA+CGG | 0.639782 | 4_4:+20212632 | Msa0673610:three_prime_UTR |
| CAGAGCGATGCTGATGCTGA+AGG | 0.646208 | 4_4:-20209267 | None:intergenic |
| CACGCGAAAGTGACACATCG+TGG | 0.651769 | 4_4:+20212157 | Msa0673610:CDS |
| GTTGAGTATACCACTAAGTG+TGG | 0.679265 | 4_4:-20212630 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAGTTATTATAAATAT+AGG | - | chr4_4:20210879-20210898 | None:intergenic | 10.0% |
| !! | ATATTTGATATAAAGATTAT+GGG | + | chr4_4:20211030-20211049 | Msa0673610:intron | 10.0% |
| !! | TAATTTAAACTAACTTTATA+TGG | + | chr4_4:20211911-20211930 | Msa0673610:intron | 10.0% |
| !!! | TTTTTTGCAAAAGAAATAAT+TGG | + | chr4_4:20210949-20210968 | Msa0673610:intron | 15.0% |
| !! | GATATTTGATATAAAGATTA+TGG | + | chr4_4:20211029-20211048 | Msa0673610:intron | 15.0% |
| !! | TTTAAACAGAAATAAGTATT+TGG | + | chr4_4:20211100-20211119 | Msa0673610:intron | 15.0% |
| !!! | AAGTTTATTTTATCTTATGA+AGG | + | chr4_4:20211201-20211220 | Msa0673610:intron | 15.0% |
| !!! | TTCAATAATCTAATTTTTCT+TGG | + | chr4_4:20211336-20211355 | Msa0673610:intron | 15.0% |
| !!! | AAAATAAATAATTTGCACTT+TGG | + | chr4_4:20211580-20211599 | Msa0673610:intron | 15.0% |
| !! | AAGAAAATGTCTAATAAAAA+CGG | - | chr4_4:20212121-20212140 | None:intergenic | 15.0% |
| !!! | TGTTACAAATTTTATTTAAC+TGG | + | chr4_4:20212466-20212485 | Msa0673610:three_prime_UTR | 15.0% |
| !!! | AGAAGAAAAAATTTAAAACT+AGG | - | chr4_4:20212570-20212589 | None:intergenic | 15.0% |
| !!! | AAAATTTGTTTATCCAAACA+GGG | - | chr4_4:20209671-20209690 | None:intergenic | 20.0% |
| !!! | TAAAATTTGTTTATCCAAAC+AGG | - | chr4_4:20209672-20209691 | None:intergenic | 20.0% |
| !!! | AAATTTTATTTTACAGCTTC+TGG | + | chr4_4:20209684-20209703 | Msa0673610:intron | 20.0% |
| !!! | AGTTTGACAATGTTTAATTT+TGG | - | chr4_4:20209743-20209762 | None:intergenic | 20.0% |
| !!! | ATAACTGATTATTTTACCTT+TGG | + | chr4_4:20210888-20210907 | Msa0673610:intron | 20.0% |
| !! | AAGTTATTAGTTACAATACT+TGG | + | chr4_4:20211224-20211243 | Msa0673610:intron | 20.0% |
| !! | AGTTATTAGTTACAATACTT+GGG | + | chr4_4:20211225-20211244 | Msa0673610:intron | 20.0% |
| !! | TGAAAACAGTACTTATTATT+AGG | - | chr4_4:20211320-20211339 | None:intergenic | 20.0% |
| !! | AACACTTGATATAGATATTA+TGG | + | chr4_4:20211668-20211687 | Msa0673610:intron | 20.0% |
| !!! | TAAAAGGTTTTTTTATGGAT+TGG | - | chr4_4:20211747-20211766 | None:intergenic | 20.0% |
| !!! | AAGCTTAAAAGGTTTTTTTA+TGG | - | chr4_4:20211752-20211771 | None:intergenic | 20.0% |
| !!! | ACATATTGATTTTACTTATG+AGG | + | chr4_4:20211807-20211826 | Msa0673610:intron | 20.0% |
| !!! | CATATTGATTTTACTTATGA+GGG | + | chr4_4:20211808-20211827 | Msa0673610:intron | 20.0% |
| !! | AAACATTGTCAAACTGTTTT+AGG | + | chr4_4:20209748-20209767 | Msa0673610:intron | 25.0% |
| !! | AACATTGTCAAACTGTTTTA+GGG | + | chr4_4:20209749-20209768 | Msa0673610:intron | 25.0% |
| ! | TATTATTCATAAGCTTCTCA+AGG | - | chr4_4:20209879-20209898 | None:intergenic | 25.0% |
| ! | TATTGTCCAATGATGTAATT+AGG | - | chr4_4:20209998-20210017 | None:intergenic | 25.0% |
| ! | ATAAGAAGTAAGAGAAATTG+AGG | + | chr4_4:20210015-20210034 | Msa0673610:intron | 25.0% |
| ! | TAAGAAGTAAGAGAAATTGA+GGG | + | chr4_4:20210016-20210035 | Msa0673610:intron | 25.0% |
| ! | CTAATAGTGTTGTCAAATAT+CGG | + | chr4_4:20210364-20210383 | Msa0673610:intron | 25.0% |
| !! | ATGGTGAAATTTGAACATTT+TGG | + | chr4_4:20211001-20211020 | Msa0673610:intron | 25.0% |
| ! | TGATATAAAGATTATGGGTA+TGG | + | chr4_4:20211035-20211054 | Msa0673610:intron | 25.0% |
| !! | GTTTAAAGAAGACAATTTTC+TGG | + | chr4_4:20211162-20211181 | Msa0673610:intron | 25.0% |
| ! | TTATATCACTTCTCATATGT+AGG | + | chr4_4:20211249-20211268 | Msa0673610:intron | 25.0% |
| ! | GAGTTATGTAATTAAGAATC+TGG | - | chr4_4:20211379-20211398 | None:intergenic | 25.0% |
| ! | TTGTTTGTATTTATGAGAAC+TGG | + | chr4_4:20211482-20211501 | Msa0673610:intron | 25.0% |
| !!! | TGAGAACTGGTTTTTTTTTT+TGG | + | chr4_4:20211495-20211514 | Msa0673610:intron | 25.0% |
| !!! | TCGCTTTTCTAGTTTATTAT+TGG | + | chr4_4:20211549-20211568 | Msa0673610:intron | 25.0% |
| !! | AAAAAAACCTTTTAAGCTTG+AGG | + | chr4_4:20211753-20211772 | Msa0673610:intron | 25.0% |
| !! | TTTTACACGAGTACTAATAT+TGG | - | chr4_4:20211889-20211908 | None:intergenic | 25.0% |
| ! | CTTGATACTGTTAAAGAAAA+CGG | + | chr4_4:20212373-20212392 | Msa0673610:CDS | 25.0% |
| ! | TTGATACTGTTAAAGAAAAC+GGG | + | chr4_4:20212374-20212393 | Msa0673610:CDS | 25.0% |
| ! | TAAAACAACATAAGCTGATA+GGG | - | chr4_4:20212421-20212440 | None:intergenic | 25.0% |
| ! | AAACTAGGCGTATAAATATA+CGG | - | chr4_4:20212555-20212574 | None:intergenic | 25.0% |
| GTGTTGAAACTATGAGTATA+TGG | + | chr4_4:20209621-20209640 | Msa0673610:intron | 30.0% | |
| ATGAGTATATGGTAGAAATG+TGG | + | chr4_4:20209632-20209651 | Msa0673610:intron | 30.0% | |
| AGCTTATTATTTGCATAAGC+TGG | + | chr4_4:20209905-20209924 | Msa0673610:intron | 30.0% | |
| TGATGTAATTAGGATCTGTT+TGG | - | chr4_4:20209988-20210007 | None:intergenic | 30.0% | |
| ACAGATCCTAATTACATCAT+TGG | + | chr4_4:20209989-20210008 | Msa0673610:intron | 30.0% | |
| ! | TTGTCACTCAAATGAGTTTT+GGG | - | chr4_4:20210137-20210156 | None:intergenic | 30.0% |
| ! | ATTGTCACTCAAATGAGTTT+TGG | - | chr4_4:20210138-20210157 | None:intergenic | 30.0% |
| ATGAATACATACCAGAATCA+TGG | + | chr4_4:20210630-20210649 | Msa0673610:intron | 30.0% | |
| ! | TGACATTGGTTGTTACTATT+AGG | - | chr4_4:20210666-20210685 | None:intergenic | 30.0% |
| AGAAGAAAAATGAAGTCCAA+AGG | - | chr4_4:20210907-20210926 | None:intergenic | 30.0% | |
| TGTTCAAATTTCACCATTCA+TGG | - | chr4_4:20210998-20211017 | None:intergenic | 30.0% | |
| TCCAATTTGAACATACTTCT+AGG | + | chr4_4:20211058-20211077 | Msa0673610:intron | 30.0% | |
| CATTTGTGACAATATCATGT+GGG | + | chr4_4:20211440-20211459 | Msa0673610:intron | 30.0% | |
| !! | TTTTGGTTACATATGAGAAC+TGG | + | chr4_4:20211512-20211531 | Msa0673610:intron | 30.0% |
| TATGAGAACTGGTTAATCTT+TGG | + | chr4_4:20211523-20211542 | Msa0673610:intron | 30.0% | |
| !!! | TTGGTCAATTTTTTCTTTCG+TGG | + | chr4_4:20211599-20211618 | Msa0673610:intron | 30.0% |
| TAGAAGTTCTTCAACTGAAA+TGG | + | chr4_4:20211710-20211729 | Msa0673610:intron | 30.0% | |
| AGAAGTTCTTCAACTGAAAT+GGG | + | chr4_4:20211711-20211730 | Msa0673610:intron | 30.0% | |
| TAAACAACCTCAAGCTTAAA+AGG | - | chr4_4:20211763-20211782 | None:intergenic | 30.0% | |
| AAGCAGGCATTATTTAGTAT+TGG | - | chr4_4:20211946-20211965 | None:intergenic | 30.0% | |
| TAATTCAGTTTAACATCTGC+AGG | + | chr4_4:20211994-20212013 | Msa0673610:intron | 30.0% | |
| AATTCAGTTTAACATCTGCA+GGG | + | chr4_4:20211995-20212014 | Msa0673610:intron | 30.0% | |
| TCAATCCTTTCATTCTTTCT+CGG | - | chr4_4:20212334-20212353 | None:intergenic | 30.0% | |
| AGAAAGAATGAAAGGATTGA+AGG | + | chr4_4:20212334-20212353 | Msa0673610:CDS | 30.0% | |
| CTAAAACAACATAAGCTGAT+AGG | - | chr4_4:20212422-20212441 | None:intergenic | 30.0% | |
| ! | GAAATGATAACGAGTTGTGT+TGG | + | chr4_4:20209231-20209250 | Msa0673610:exon | 35.0% |
| TCTGTTGCGATAATAAGCTT+CGG | + | chr4_4:20209286-20209305 | Msa0673610:CDS | 35.0% | |
| CTTGAAAATGAAAGCGAAGT+CGG | - | chr4_4:20209339-20209358 | None:intergenic | 35.0% | |
| GAGATAGAAATGGGTAAAGA+AGG | - | chr4_4:20209369-20209388 | None:intergenic | 35.0% | |
| GTGGTTGTTGAGATAGAAAT+GGG | - | chr4_4:20209378-20209397 | None:intergenic | 35.0% | |
| AGTGGTTGTTGAGATAGAAA+TGG | - | chr4_4:20209379-20209398 | None:intergenic | 35.0% | |
| AGTGTGTTAGAACGTACTTT+GGG | - | chr4_4:20209426-20209445 | None:intergenic | 35.0% | |
| TTTGGATTGTGACACTGTTT+GGG | - | chr4_4:20209970-20209989 | None:intergenic | 35.0% | |
| AGTAAGAGAAATTGAGGGTA+TGG | + | chr4_4:20210021-20210040 | Msa0673610:intron | 35.0% | |
| ! | GTAAGAGAAATTGAGGGTAT+GGG | + | chr4_4:20210022-20210041 | Msa0673610:intron | 35.0% |
| ATGCGTCCTATGAAATTATG+CGG | + | chr4_4:20210104-20210123 | Msa0673610:intron | 35.0% | |
| CCTTTCATTAGTCAGTTTGA+GGG | - | chr4_4:20210298-20210317 | None:intergenic | 35.0% | |
| !! | GATTTTTGGAAAAACTGCCA+TGG | + | chr4_4:20210419-20210438 | Msa0673610:intron | 35.0% |
| AAAGCCAAAAATCCGACATA+TGG | - | chr4_4:20210476-20210495 | None:intergenic | 35.0% | |
| GATAGCAGCTCACAAATTTA+AGG | + | chr4_4:20210547-20210566 | Msa0673610:intron | 35.0% | |
| ! | CTACGAGTAACTACTCATTT+TGG | - | chr4_4:20210574-20210593 | None:intergenic | 35.0% |
| !! | TGTGGTTAGAGTATTGACAT+TGG | - | chr4_4:20210680-20210699 | None:intergenic | 35.0% |
| TCAATACTCTAACCACACTT+GGG | + | chr4_4:20210683-20210702 | Msa0673610:intron | 35.0% | |
| CCTTGTTAAAGATGCTACAT+AGG | - | chr4_4:20210826-20210845 | None:intergenic | 35.0% | |
| CCTATGTAGCATCTTTAACA+AGG | + | chr4_4:20210823-20210842 | Msa0673610:intron | 35.0% | |
| CACTGAACTTCTGATATTAG+AGG | + | chr4_4:20210972-20210991 | Msa0673610:intron | 35.0% | |
| ! | GCCTAGAAGTATGTTCAAAT+TGG | - | chr4_4:20211062-20211081 | None:intergenic | 35.0% |
| ACAGATACCTGAATGATAAC+AGG | + | chr4_4:20211288-20211307 | Msa0673610:intron | 35.0% | |
| ! | TAACTCTGTCTCGTGAATTT+TGG | + | chr4_4:20211393-20211412 | Msa0673610:intron | 35.0% |
| GCATTTGTGACAATATCATG+TGG | + | chr4_4:20211439-20211458 | Msa0673610:intron | 35.0% | |
| TAGATATTATGGCGCACTTT+AGG | + | chr4_4:20211679-20211698 | Msa0673610:intron | 35.0% | |
| AAGAGAGTTTCGAAGATCTT+TGG | - | chr4_4:20212218-20212237 | None:intergenic | 35.0% | |
| AAGCTTGTAGAGTAATTGGA+AGG | + | chr4_4:20212257-20212276 | Msa0673610:CDS | 35.0% | |
| ATGAACCGAGAAAGAATGAA+AGG | + | chr4_4:20212326-20212345 | Msa0673610:CDS | 35.0% | |
| ! | GTTTGCTCCTTGATGTTTTA+TGG | + | chr4_4:20212510-20212529 | Msa0673610:three_prime_UTR | 35.0% |
| GATGTGTCCATAAAACATCA+AGG | - | chr4_4:20212520-20212539 | None:intergenic | 35.0% | |
| TTGTGTTTGTTCTCTCTTCT+CGG | + | chr4_4:20212598-20212617 | Msa0673610:three_prime_UTR | 35.0% | |
| ACACTTAGTGGTATACTCAA+CGG | + | chr4_4:20212632-20212651 | Msa0673610:three_prime_UTR | 35.0% | |
| TGCTCTTCTCTAAACAGCAA+AGG | + | chr4_4:20209184-20209203 | Msa0673610:five_prime_UTR | 40.0% | |
| GTAGTGAGAAGAAGAAGAAG+TGG | + | chr4_4:20209209-20209228 | Msa0673610:five_prime_UTR | 40.0% | |
| ! | TGATAACGAGTTGTGTTGGT+TGG | + | chr4_4:20209235-20209254 | Msa0673610:CDS | 40.0% |
| !! | GATAACGAGTTGTGTTGGTT+GGG | + | chr4_4:20209236-20209255 | Msa0673610:CDS | 40.0% |
| ! | TTTGGGATTGTTGGAGTTTG+GGG | - | chr4_4:20209409-20209428 | None:intergenic | 40.0% |
| !! | CTTTGGGATTGTTGGAGTTT+GGG | - | chr4_4:20209410-20209429 | None:intergenic | 40.0% |
| !! | ACTTTGGGATTGTTGGAGTT+TGG | - | chr4_4:20209411-20209430 | None:intergenic | 40.0% |
| !! | AGAACGTACTTTGGGATTGT+TGG | - | chr4_4:20209418-20209437 | None:intergenic | 40.0% |
| GAGTGTGTTAGAACGTACTT+TGG | - | chr4_4:20209427-20209446 | None:intergenic | 40.0% | |
| AAACTCATTGAGACCCTGTT+TGG | + | chr4_4:20209655-20209674 | Msa0673610:intron | 40.0% | |
| TTTGGGAGAACTCATGACAT+GGG | - | chr4_4:20209953-20209972 | None:intergenic | 40.0% | |
| GTTTGGATTGTGACACTGTT+TGG | - | chr4_4:20209971-20209990 | None:intergenic | 40.0% | |
| ACGAGTCCGCATAATTTCAT+AGG | - | chr4_4:20210113-20210132 | None:intergenic | 40.0% | |
| CCCTCAAACTGACTAATGAA+AGG | + | chr4_4:20210295-20210314 | Msa0673610:intron | 40.0% | |
| GCCTTTCATTAGTCAGTTTG+AGG | - | chr4_4:20210299-20210318 | None:intergenic | 40.0% | |
| GTGTTGTCAAATATCGGTCA+TGG | + | chr4_4:20210370-20210389 | Msa0673610:intron | 40.0% | |
| TTGTCAAATATCGGTCATGG+TGG | + | chr4_4:20210373-20210392 | Msa0673610:intron | 40.0% | |
| ! | GGATATCTGTGGCAGATTTT+TGG | + | chr4_4:20210405-20210424 | Msa0673610:intron | 40.0% |
| ATACATACCAGAATCATGGC+AGG | + | chr4_4:20210634-20210653 | Msa0673610:intron | 40.0% | |
| GTAAATACCTGCCATGATTC+TGG | - | chr4_4:20210644-20210663 | None:intergenic | 40.0% | |
| GTCAATACTCTAACCACACT+TGG | + | chr4_4:20210682-20210701 | Msa0673610:intron | 40.0% | |
| CTGATATTAGAGGCCATGAA+TGG | + | chr4_4:20210982-20211001 | Msa0673610:intron | 40.0% | |
| GTACAGACCTGTTATCATTC+AGG | - | chr4_4:20211298-20211317 | None:intergenic | 40.0% | |
| GCAACATAAAACACACTGCA+TGG | - | chr4_4:20211421-20211440 | None:intergenic | 40.0% | |
| AACAGTCCCTGTCAGAAATT+CGG | - | chr4_4:20211629-20211648 | None:intergenic | 40.0% | |
| TTTCTGACAGGGACTGTTAA+TGG | + | chr4_4:20211631-20211650 | Msa0673610:intron | 40.0% | |
| ACAAGCTTCAGGATCTATCA+AGG | - | chr4_4:20212245-20212264 | None:intergenic | 40.0% | |
| CCAATTACTCTACAAGCTTC+AGG | - | chr4_4:20212256-20212275 | None:intergenic | 40.0% | |
| CCTGAAGCTTGTAGAGTAAT+TGG | + | chr4_4:20212253-20212272 | Msa0673610:CDS | 40.0% | |
| GGAAGCTGATGTATATGCAA+TGG | + | chr4_4:20212300-20212319 | Msa0673610:CDS | 40.0% | |
| TGAAAGGATTGAAGGTAGAC+TGG | + | chr4_4:20212342-20212361 | Msa0673610:CDS | 40.0% | |
| GAAAGGATTGAAGGTAGACT+GGG | + | chr4_4:20212343-20212362 | Msa0673610:CDS | 40.0% | |
| TGTGTTTGTTCTCTCTTCTC+GGG | + | chr4_4:20212599-20212618 | Msa0673610:three_prime_UTR | 40.0% | |
| GTTGAGTATACCACTAAGTG+TGG | - | chr4_4:20212633-20212652 | None:intergenic | 40.0% | |
| TTGGGATTGTTGGAGTTTGG+GGG | - | chr4_4:20209408-20209427 | None:intergenic | 45.0% | |
| TTGGGAGAACTCATGACATG+GGG | - | chr4_4:20209952-20209971 | None:intergenic | 45.0% | |
| GTTTGGGAGAACTCATGACA+TGG | - | chr4_4:20209954-20209973 | None:intergenic | 45.0% | |
| CATCCTTCACAAATTGGCCA+TGG | - | chr4_4:20210439-20210458 | None:intergenic | 45.0% | |
| CATGGCCAATTTGTGAAGGA+TGG | + | chr4_4:20210437-20210456 | Msa0673610:intron | 45.0% | |
| !! | GGTGCCATATGTCGGATTTT+TGG | + | chr4_4:20210469-20210488 | Msa0673610:intron | 45.0% |
| !!! | GGATTTTTGGCTTTCCACCA+TGG | + | chr4_4:20210482-20210501 | Msa0673610:intron | 45.0% |
| TGACAAATTGCAGACCATGG+TGG | - | chr4_4:20210499-20210518 | None:intergenic | 45.0% | |
| CGATGACAAATTGCAGACCA+TGG | - | chr4_4:20210502-20210521 | None:intergenic | 45.0% | |
| TACTCTAACCACACTTGGGT+TGG | + | chr4_4:20210687-20210706 | Msa0673610:intron | 45.0% | |
| CTTGTGTGTTCAATTCTCCC+CGG | + | chr4_4:20210711-20210730 | Msa0673610:intron | 45.0% | |
| !! | GCCAATTTTGGTGGGCAATT+TGG | + | chr4_4:20210735-20210754 | Msa0673610:intron | 45.0% |
| GCCAAATTGCCCACCAAAAT+TGG | - | chr4_4:20210739-20210758 | None:intergenic | 45.0% | |
| CACATTAGCACAAGTGAAGC+AGG | - | chr4_4:20211962-20211981 | None:intergenic | 45.0% | |
| GTACATTCATTCGAGCTGCT+TGG | + | chr4_4:20212017-20212036 | Msa0673610:CDS | 45.0% | |
| AAGCTGAAAAGAAACCCAGC+AGG | + | chr4_4:20212059-20212078 | Msa0673610:CDS | 45.0% | |
| AGAAACCCAGCAGGAAATCA+TGG | + | chr4_4:20212068-20212087 | Msa0673610:CDS | 45.0% | |
| TCGAAGATCTTTGGCGTTTG+TGG | - | chr4_4:20212209-20212228 | None:intergenic | 45.0% | |
| GCTTCAGGATCTATCAAGGA+TGG | - | chr4_4:20212241-20212260 | None:intergenic | 45.0% | |
| GCTTATTGCAGAGCGATCAA+AGG | + | chr4_4:20212279-20212298 | Msa0673610:CDS | 45.0% | |
| GGATCAATGTCCACACTTAG+TGG | + | chr4_4:20212620-20212639 | Msa0673610:three_prime_UTR | 45.0% | |
| !! | ATAATAATAATGAATAATTA+AGG | - | chr4_4:20209490-20209509 | None:intergenic | 5.0% |
| ACTCATGACATGGGGCTGTT+TGG | - | chr4_4:20209944-20209963 | None:intergenic | 50.0% | |
| CTGCCATGGCCAATTTGTGA+AGG | + | chr4_4:20210433-20210452 | Msa0673610:intron | 50.0% | |
| CGCTGCCATCCTTCACAAAT+TGG | - | chr4_4:20210445-20210464 | None:intergenic | 50.0% | |
| CGGGGAGAATTGAACACACA+AGG | - | chr4_4:20210713-20210732 | None:intergenic | 50.0% | |
| !! | ATTCTCCCCGGTGCCAATTT+TGG | + | chr4_4:20210723-20210742 | Msa0673610:intron | 50.0% |
| TTGCCCACCAAAATTGGCAC+CGG | - | chr4_4:20210733-20210752 | None:intergenic | 50.0% | |
| TGGCGATCCGAATTTCTGAC+AGG | + | chr4_4:20211619-20211638 | Msa0673610:intron | 50.0% | |
| GGCGATCCGAATTTCTGACA+GGG | + | chr4_4:20211620-20211639 | Msa0673610:intron | 50.0% | |
| CGCTTCCATGATTTCCTGCT+GGG | - | chr4_4:20212076-20212095 | None:intergenic | 50.0% | |
| CCAGCAGGAAATCATGGAAG+CGG | + | chr4_4:20212074-20212093 | Msa0673610:CDS | 50.0% | |
| CAGAGCGATGCTGATGCTGA+AGG | - | chr4_4:20209270-20209289 | None:intergenic | 55.0% | |
| AGCGAAGTCGGAGACGAAGA+AGG | - | chr4_4:20209327-20209346 | None:intergenic | 55.0% | |
| ! | TATCGGTCATGGTGGCGCTA+TGG | + | chr4_4:20210381-20210400 | Msa0673610:intron | 55.0% |
| ACACAAGGCCAACCCAAGTG+TGG | - | chr4_4:20210698-20210717 | None:intergenic | 55.0% | |
| !! | TCCCCGGTGCCAATTTTGGT+GGG | + | chr4_4:20210727-20210746 | Msa0673610:intron | 55.0% |
| TGCCCACCAAAATTGGCACC+GGG | - | chr4_4:20210732-20210751 | None:intergenic | 55.0% | |
| GCTTGGACTCGAAGATCTCG+AGG | + | chr4_4:20212034-20212053 | Msa0673610:CDS | 55.0% | |
| CCGCTTCCATGATTTCCTGC+TGG | - | chr4_4:20212077-20212096 | None:intergenic | 55.0% | |
| CACGCGAAAGTGACACATCG+TGG | + | chr4_4:20212157-20212176 | Msa0673610:CDS | 55.0% | |
| GGAGTTTGGGGGAGAGAGAG+TGG | - | chr4_4:20209397-20209416 | None:intergenic | 60.0% | |
| !! | GGCGCTATGGCGGATATCTG+TGG | + | chr4_4:20210394-20210413 | Msa0673610:intron | 60.0% |
| TGTGAAGGATGGCAGCGCTG+CGG | + | chr4_4:20210448-20210467 | Msa0673610:intron | 60.0% | |
| !! | AGCGCTGCGGTGCCATATGT+CGG | + | chr4_4:20210461-20210480 | Msa0673610:intron | 60.0% |
| !! | CTCCCCGGTGCCAATTTTGG+TGG | + | chr4_4:20210726-20210745 | Msa0673610:intron | 60.0% |
| GCCCACCAAAATTGGCACCG+GGG | - | chr4_4:20210731-20210750 | None:intergenic | 60.0% | |
| ! | CGGTCATGGTGGCGCTATGG+CGG | + | chr4_4:20210384-20210403 | Msa0673610:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 20209164 | 20212703 | 20209164 | ID=Msa0673610;Name=Msa0673610 |
| chr4_4 | mRNA | 20209164 | 20212703 | 20209164 | ID=Msa0673610-mRNA-1;Parent=Msa0673610;Name=Msa0673610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=70|1|1|1|1|1|2|292|196 |
| chr4_4 | exon | 20209164 | 20209428 | 20209164 | ID=Msa0673610-mRNA-1:exon:5796;Parent=Msa0673610-mRNA-1 |
| chr4_4 | exon | 20212016 | 20212703 | 20212016 | ID=Msa0673610-mRNA-1:exon:5797;Parent=Msa0673610-mRNA-1 |
| chr4_4 | five_prime_UTR | 20209164 | 20209233 | 20209164 | ID=Msa0673610-mRNA-1:five_prime_utr;Parent=Msa0673610-mRNA-1 |
| chr4_4 | CDS | 20209234 | 20209428 | 20209234 | ID=Msa0673610-mRNA-1:cds;Parent=Msa0673610-mRNA-1 |
| chr4_4 | CDS | 20212016 | 20212411 | 20212016 | ID=Msa0673610-mRNA-1:cds;Parent=Msa0673610-mRNA-1 |
| chr4_4 | three_prime_UTR | 20212412 | 20212703 | 20212412 | ID=Msa0673610-mRNA-1:three_prime_utr;Parent=Msa0673610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
