Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726440 | XP_003613952.1 | 97.403 | 231 | 6 | 0 | 1 | 231 | 1 | 231 | 5.01e-164 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726440 | sp|Q9C4Z7|MINE1_ARATH | 59.746 | 236 | 80 | 7 | 1 | 228 | 1 | 229 | 1.13e-86 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726440 | G7JWN8 | 97.403 | 231 | 6 | 0 | 1 | 231 | 1 | 231 | 2.39e-164 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0726440 | 0.828231 | 1.008542e-54 | -8.615850e-47 |
| Msa0011850 | Msa0726440 | 0.810476 | 1.131248e-50 | -8.615850e-47 |
| Msa0017120 | Msa0726440 | 0.812525 | 4.057366e-51 | -8.615850e-47 |
| Msa0017940 | Msa0726440 | 0.806989 | 6.291463e-50 | -8.615850e-47 |
| Msa0024680 | Msa0726440 | 0.823450 | 1.376135e-53 | -8.615850e-47 |
| Msa0027540 | Msa0726440 | 0.830244 | 3.275541e-55 | -8.615850e-47 |
| Msa0030000 | Msa0726440 | 0.875098 | 4.027503e-68 | -8.615850e-47 |
| Msa0048020 | Msa0726440 | 0.806570 | 7.716707e-50 | -8.615850e-47 |
| Msa0050430 | Msa0726440 | 0.803129 | 4.038763e-49 | -8.615850e-47 |
| Msa0057260 | Msa0726440 | 0.814480 | 1.508390e-51 | -8.615850e-47 |
| Msa0075310 | Msa0726440 | 0.828305 | 9.680549e-55 | -8.615850e-47 |
| Msa0083160 | Msa0726440 | 0.809879 | 1.521413e-50 | -8.615850e-47 |
| Msa0084680 | Msa0726440 | 0.802716 | 4.917471e-49 | -8.615850e-47 |
| Msa0089210 | Msa0726440 | 0.809119 | 2.214558e-50 | -8.615850e-47 |
| Msa0091770 | Msa0726440 | 0.800725 | 1.259713e-48 | -8.615850e-47 |
| Msa0092730 | Msa0726440 | 0.802112 | 6.547579e-49 | -8.615850e-47 |
| Msa0094420 | Msa0726440 | 0.803317 | 3.692901e-49 | -8.615850e-47 |
| Msa0105420 | Msa0726440 | 0.822056 | 2.905393e-53 | -8.615850e-47 |
| Msa0113160 | Msa0726440 | 0.803907 | 2.786311e-49 | -8.615850e-47 |
| Msa0614040 | Msa0726440 | 0.830101 | 3.550182e-55 | -8.615850e-47 |
| Msa0615600 | Msa0726440 | 0.801827 | 7.491433e-49 | -8.615850e-47 |
| Msa0619330 | Msa0726440 | 0.822884 | 1.865497e-53 | -8.615850e-47 |
| Msa0619980 | Msa0726440 | 0.803147 | 4.005262e-49 | -8.615850e-47 |
| Msa0624730 | Msa0726440 | 0.804408 | 2.191819e-49 | -8.615850e-47 |
| Msa0631840 | Msa0726440 | 0.819273 | 1.266451e-52 | -8.615850e-47 |
| Msa0640880 | Msa0726440 | 0.811725 | 6.064883e-51 | -8.615850e-47 |
| Msa0642650 | Msa0726440 | 0.856420 | 3.256656e-62 | -8.615850e-47 |
| Msa0654060 | Msa0726440 | 0.803832 | 2.887695e-49 | -8.615850e-47 |
| Msa0659070 | Msa0726440 | 0.807095 | 5.974713e-50 | -8.615850e-47 |
| Msa0667220 | Msa0726440 | 0.802532 | 5.364580e-49 | -8.615850e-47 |
| Msa0673610 | Msa0726440 | 0.833834 | 4.247138e-56 | -8.615850e-47 |
| Msa0674220 | Msa0726440 | 0.816670 | 4.905066e-52 | -8.615850e-47 |
| Msa0681890 | Msa0726440 | 0.862850 | 3.783678e-64 | -8.615850e-47 |
| Msa0682400 | Msa0726440 | 0.801668 | 8.079031e-49 | -8.615850e-47 |
| Msa0686610 | Msa0726440 | 0.820577 | 6.374365e-53 | -8.615850e-47 |
| Msa0693570 | Msa0726440 | 0.839182 | 1.845952e-57 | -8.615850e-47 |
| Msa0698760 | Msa0726440 | 0.814704 | 1.345001e-51 | -8.615850e-47 |
| Msa0706410 | Msa0726440 | 0.801053 | 1.079530e-48 | -8.615850e-47 |
| Msa0707780 | Msa0726440 | 0.811723 | 6.071123e-51 | -8.615850e-47 |
| Msa0709190 | Msa0726440 | 0.801107 | 1.052396e-48 | -8.615850e-47 |
| Msa0709480 | Msa0726440 | 0.812874 | 3.403151e-51 | -8.615850e-47 |
| Msa0719340 | Msa0726440 | 0.806043 | 9.963508e-50 | -8.615850e-47 |
| Msa0725480 | Msa0726440 | -0.800515 | 1.389751e-48 | -8.615850e-47 |
| Msa0726440 | Msa0758860 | 0.826022 | 3.406988e-54 | -8.615850e-47 |
| Msa0726440 | Msa0770430 | 0.805084 | 1.583488e-49 | -8.615850e-47 |
| Msa0726440 | Msa0803130 | 0.810481 | 1.128021e-50 | -8.615850e-47 |
| Msa0726440 | Msa0803920 | 0.802827 | 4.664592e-49 | -8.615850e-47 |
| Msa0726440 | Msa0811510 | 0.804299 | 2.309198e-49 | -8.615850e-47 |
| Msa0726440 | Msa0812660 | 0.863173 | 3.007038e-64 | -8.615850e-47 |
| Msa0726440 | Msa0841490 | 0.804824 | 1.794599e-49 | -8.615850e-47 |
| Msa0726440 | Msa0890250 | 0.843438 | 1.401563e-58 | -8.615850e-47 |
| Msa0726440 | Msa0907700 | 0.854464 | 1.209911e-61 | -8.615850e-47 |
| Msa0726440 | Msa0922540 | 0.844923 | 5.595977e-59 | -8.615850e-47 |
| Msa0726440 | Msa0925160 | 0.838744 | 2.397102e-57 | -8.615850e-47 |
| Msa0726440 | Msa0930330 | 0.814334 | 1.624288e-51 | -8.615850e-47 |
| Msa0726440 | Msa0931610 | 0.802322 | 5.928536e-49 | -8.615850e-47 |
| Msa0726440 | Msa0955260 | 0.819925 | 8.991566e-53 | -8.615850e-47 |
| Msa0726440 | Msa0958020 | 0.838074 | 3.568896e-57 | -8.615850e-47 |
| Msa0726440 | Msa0971860 | 0.801010 | 1.101786e-48 | -8.615850e-47 |
| Msa0726440 | Msa0990520 | 0.833972 | 3.921609e-56 | -8.615850e-47 |
| Msa0726440 | Msa0992590 | 0.817128 | 3.872898e-52 | -8.615850e-47 |
| Msa0726440 | Msa0996090 | 0.825011 | 5.912830e-54 | -8.615850e-47 |
| Msa0726440 | Msa1002040 | 0.821316 | 4.308757e-53 | -8.615850e-47 |
| Msa0726440 | Msa1004500 | 0.831473 | 1.636690e-55 | -8.615850e-47 |
| Msa0726440 | Msa1004520 | 0.827982 | 1.158127e-54 | -8.615850e-47 |
| Msa0726440 | Msa1011210 | 0.800632 | 1.316030e-48 | -8.615850e-47 |
| Msa0726440 | Msa1018790 | 0.822477 | 2.320279e-53 | -8.615850e-47 |
| Msa0726440 | Msa1022310 | 0.806585 | 7.658418e-50 | -8.615850e-47 |
| Msa0726440 | Msa1028460 | 0.803633 | 3.176407e-49 | -8.615850e-47 |
| Msa0726440 | Msa1029320 | 0.822437 | 2.370274e-53 | -8.615850e-47 |
| Msa0726440 | Msa1044340 | 0.833425 | 5.374150e-56 | -8.615850e-47 |
| Msa0726440 | Msa1046870 | 0.807924 | 3.985925e-50 | -8.615850e-47 |
| Msa0726440 | Msa1058010 | 0.828875 | 7.047906e-55 | -8.615850e-47 |
| Msa0726440 | Msa1061180 | 0.805070 | 1.594314e-49 | -8.615850e-47 |
| Msa0726440 | Msa1073840 | 0.836270 | 1.032808e-56 | -8.615850e-47 |
| Msa0726440 | Msa1097380 | 0.821450 | 4.011207e-53 | -8.615850e-47 |
| Msa0726440 | Msa1106560 | 0.801835 | 7.463192e-49 | -8.615850e-47 |
| Msa0726440 | Msa1106810 | 0.815421 | 9.325628e-52 | -8.615850e-47 |
| Msa0726440 | Msa1125780 | 0.815856 | 7.458738e-52 | -8.615850e-47 |
| Msa0726440 | Msa1125950 | 0.815276 | 1.004450e-51 | -8.615850e-47 |
| Msa0726440 | Msa1129720 | 0.813240 | 2.829426e-51 | -8.615850e-47 |
| Msa0726440 | Msa1131470 | 0.802503 | 5.439079e-49 | -8.615850e-47 |
| Msa0726440 | Msa1149760 | 0.805322 | 1.411466e-49 | -8.615850e-47 |
| Msa0726440 | Msa1154670 | 0.816125 | 6.497824e-52 | -8.615850e-47 |
| Msa0726440 | Msa1159100 | 0.800661 | 1.298251e-48 | -8.615850e-47 |
| Msa0726440 | Msa1159990 | 0.816879 | 4.405333e-52 | -8.615850e-47 |
| Msa0726440 | Msa1160730 | -0.806091 | 9.732445e-50 | -8.615850e-47 |
| Msa0726440 | Msa1166180 | 0.810334 | 1.213981e-50 | -8.615850e-47 |
| Msa0726440 | Msa1166280 | 0.802051 | 6.740117e-49 | -8.615850e-47 |
| Msa0726440 | Msa1171340 | 0.820866 | 5.470558e-53 | -8.615850e-47 |
| Msa0726440 | Msa1183610 | 0.805680 | 1.187330e-49 | -8.615850e-47 |
| Msa0726440 | Msa1200920 | 0.801167 | 1.023137e-48 | -8.615850e-47 |
| Msa0726440 | Msa1210770 | 0.821996 | 3.000029e-53 | -8.615850e-47 |
| Msa0726440 | Msa1220450 | -0.839714 | 1.343366e-57 | -8.615850e-47 |
| Msa0726440 | Msa1220460 | -0.830638 | 2.624168e-55 | -8.615850e-47 |
| Msa0726440 | Msa1220480 | -0.827885 | 1.221702e-54 | -8.615850e-47 |
| Msa0726440 | Msa1223840 | 0.848045 | 7.869645e-60 | -8.615850e-47 |
| Msa0726440 | Msa1224670 | 0.808430 | 3.109835e-50 | -8.615850e-47 |
| Msa0726440 | Msa1229660 | 0.808608 | 2.848503e-50 | -8.615850e-47 |
| Msa0726440 | Msa1237030 | 0.834066 | 3.714624e-56 | -8.615850e-47 |
| Msa0726440 | Msa1250670 | 0.809086 | 2.251446e-50 | -8.615850e-47 |
| Msa0726440 | Msa1251290 | 0.807776 | 4.284828e-50 | -8.615850e-47 |
| Msa0726440 | Msa1263030 | 0.814698 | 1.349702e-51 | -8.615850e-47 |
| Msa0726440 | Msa1263660 | 0.829500 | 4.971306e-55 | -8.615850e-47 |
| Msa0726440 | Msa1265070 | 0.803627 | 3.185036e-49 | -8.615850e-47 |
| Msa0726440 | Msa1284030 | 0.830582 | 2.707448e-55 | -8.615850e-47 |
| Msa0726440 | Msa1288190 | 0.821808 | 3.316486e-53 | -8.615850e-47 |
| Msa0726440 | Msa1299160 | 0.805556 | 1.261228e-49 | -8.615850e-47 |
| Msa0726440 | Msa1303720 | 0.801506 | 8.718788e-49 | -8.615850e-47 |
| Msa0726440 | Msa1323060 | 0.845504 | 3.897618e-59 | -8.615850e-47 |
| Msa0726440 | Msa1337730 | 0.816249 | 6.095555e-52 | -8.615850e-47 |
| Msa0726440 | Msa1352290 | 0.807501 | 4.901382e-50 | -8.615850e-47 |
| Msa0726440 | Msa1354040 | 0.812353 | 4.424735e-51 | -8.615850e-47 |
| Msa0726440 | Msa1373510 | 0.834979 | 2.191171e-56 | -8.615850e-47 |
| Msa0726440 | Msa1375630 | 0.812288 | 4.571691e-51 | -8.615850e-47 |
| Msa0726440 | Msa1376530 | 0.818389 | 2.011110e-52 | -8.615850e-47 |
| Msa0726440 | Msa1376640 | 0.815065 | 1.119138e-51 | -8.615850e-47 |
| Msa0726440 | Msa1381130 | 0.812640 | 3.828665e-51 | -8.615850e-47 |
| Msa0726440 | Msa1382720 | 0.828065 | 1.105822e-54 | -8.615850e-47 |
| Msa0726440 | Msa1385620 | 0.803006 | 4.282720e-49 | -8.615850e-47 |
| Msa0726440 | Msa1390310 | 0.806948 | 6.420390e-50 | -8.615850e-47 |
| Msa0726440 | Msa1417530 | 0.818832 | 1.595684e-52 | -8.615850e-47 |
| Msa0726440 | Msa1418200 | 0.811428 | 7.036380e-51 | -8.615850e-47 |
| Msa0726440 | Msa1422270 | 0.800005 | 1.765678e-48 | -8.615850e-47 |
| Msa0726440 | Msa1442030 | 0.814684 | 1.359102e-51 | -8.615850e-47 |
| Msa0726440 | Msa1447230 | 0.801833 | 7.471345e-49 | -8.615850e-47 |
| Msa0726440 | Msa1454020 | 0.806713 | 7.195207e-50 | -8.615850e-47 |
| Msa0726440 | Msa1456650 | 0.804376 | 2.225253e-49 | -8.615850e-47 |
| Msa0726440 | Msa1456810 | 0.819600 | 1.066449e-52 | -8.615850e-47 |
| Msa0726440 | Msa1458920 | 0.804388 | 2.212489e-49 | -8.615850e-47 |
| Msa0726440 | Msa1464560 | 0.830327 | 3.125425e-55 | -8.615850e-47 |
| Msa0125230 | Msa0726440 | 0.856766 | 2.575860e-62 | -8.615850e-47 |
| Msa0130800 | Msa0726440 | 0.805979 | 1.027476e-49 | -8.615850e-47 |
| Msa0135980 | Msa0726440 | 0.802146 | 6.443405e-49 | -8.615850e-47 |
| Msa0137600 | Msa0726440 | 0.801264 | 9.774304e-49 | -8.615850e-47 |
| Msa0139900 | Msa0726440 | 0.808358 | 3.221422e-50 | -8.615850e-47 |
| Msa0140220 | Msa0726440 | 0.813586 | 2.374744e-51 | -8.615850e-47 |
| Msa0141430 | Msa0726440 | 0.803861 | 2.847812e-49 | -8.615850e-47 |
| Msa0141670 | Msa0726440 | 0.805682 | 1.186716e-49 | -8.615850e-47 |
| Msa0141830 | Msa0726440 | 0.826075 | 3.309200e-54 | -8.615850e-47 |
| Msa0142870 | Msa0726440 | 0.813369 | 2.650043e-51 | -8.615850e-47 |
| Msa0145950 | Msa0726440 | 0.816946 | 4.255199e-52 | -8.615850e-47 |
| Msa0146020 | Msa0726440 | 0.801640 | 8.186500e-49 | -8.615850e-47 |
| Msa0146470 | Msa0726440 | 0.815574 | 8.620015e-52 | -8.615850e-47 |
| Msa0157020 | Msa0726440 | 0.802401 | 5.710714e-49 | -8.615850e-47 |
| Msa0168100 | Msa0726440 | 0.828514 | 8.619716e-55 | -8.615850e-47 |
| Msa0183620 | Msa0726440 | 0.806429 | 8.262357e-50 | -8.615850e-47 |
| Msa0185390 | Msa0726440 | 0.816139 | 6.451514e-52 | -8.615850e-47 |
| Msa0190000 | Msa0726440 | 0.804776 | 1.836207e-49 | -8.615850e-47 |
| Msa0200970 | Msa0726440 | 0.804335 | 2.269175e-49 | -8.615850e-47 |
| Msa0203520 | Msa0726440 | 0.804632 | 1.967692e-49 | -8.615850e-47 |
| Msa0207000 | Msa0726440 | 0.854877 | 9.185324e-62 | -8.615850e-47 |
| Msa0227500 | Msa0726440 | 0.812944 | 3.285918e-51 | -8.615850e-47 |
| Msa0227510 | Msa0726440 | 0.825397 | 4.794649e-54 | -8.615850e-47 |
| Msa0230400 | Msa0726440 | 0.829096 | 6.232070e-55 | -8.615850e-47 |
| Msa0378340 | Msa0726440 | 0.822036 | 2.936081e-53 | -8.615850e-47 |
| Msa0380420 | Msa0726440 | 0.815702 | 8.072213e-52 | -8.615850e-47 |
| Msa0417630 | Msa0726440 | 0.806835 | 6.780600e-50 | -8.615850e-47 |
| Msa0420070 | Msa0726440 | 0.816713 | 4.797888e-52 | -8.615850e-47 |
| Msa0423360 | Msa0726440 | -0.805639 | 1.211474e-49 | -8.615850e-47 |
| Msa0425050 | Msa0726440 | 0.803897 | 2.799959e-49 | -8.615850e-47 |
| Msa0427690 | Msa0726440 | 0.820145 | 8.006377e-53 | -8.615850e-47 |
| Msa0432680 | Msa0726440 | 0.802925 | 4.451751e-49 | -8.615850e-47 |
| Msa0466100 | Msa0726440 | 0.813874 | 2.052085e-51 | -8.615850e-47 |
| Msa0467800 | Msa0726440 | 0.801408 | 9.130828e-49 | -8.615850e-47 |
| Msa0467880 | Msa0726440 | 0.800478 | 1.414285e-48 | -8.615850e-47 |
| Msa0468610 | Msa0726440 | 0.826231 | 3.038437e-54 | -8.615850e-47 |
| Msa0469910 | Msa0726440 | -0.821545 | 3.815093e-53 | -8.615850e-47 |
| Msa0469970 | Msa0726440 | 0.812689 | 3.735613e-51 | -8.615850e-47 |
| Msa0239660 | Msa0726440 | 0.805542 | 1.269365e-49 | -8.615850e-47 |
| Msa0248560 | Msa0726440 | 0.844200 | 8.760804e-59 | -8.615850e-47 |
| Msa0259980 | Msa0726440 | 0.803968 | 2.706105e-49 | -8.615850e-47 |
| Msa0264350 | Msa0726440 | 0.807726 | 4.391603e-50 | -8.615850e-47 |
| Msa0267760 | Msa0726440 | 0.804399 | 2.200464e-49 | -8.615850e-47 |
| Msa0274780 | Msa0726440 | 0.829299 | 5.565040e-55 | -8.615850e-47 |
| Msa0277640 | Msa0726440 | 0.806949 | 6.416445e-50 | -8.615850e-47 |
| Msa0281570 | Msa0726440 | 0.809133 | 2.199541e-50 | -8.615850e-47 |
| Msa0284780 | Msa0726440 | 0.800235 | 1.584928e-48 | -8.615850e-47 |
| Msa0296760 | Msa0726440 | 0.829126 | 6.129680e-55 | -8.615850e-47 |
| Msa0297920 | Msa0726440 | 0.806201 | 9.229780e-50 | -8.615850e-47 |
| Msa0298970 | Msa0726440 | 0.812735 | 3.649896e-51 | -8.615850e-47 |
| Msa0301020 | Msa0726440 | 0.812398 | 4.325220e-51 | -8.615850e-47 |
| Msa0301180 | Msa0726440 | 0.821207 | 4.564472e-53 | -8.615850e-47 |
| Msa0302450 | Msa0726440 | 0.819970 | 8.778988e-53 | -8.615850e-47 |
| Msa0304920 | Msa0726440 | 0.822439 | 2.367860e-53 | -8.615850e-47 |
| Msa0320540 | Msa0726440 | 0.822078 | 2.871081e-53 | -8.615850e-47 |
| Msa0328210 | Msa0726440 | 0.808834 | 2.549363e-50 | -8.615850e-47 |
| Msa0339860 | Msa0726440 | 0.807994 | 3.850259e-50 | -8.615850e-47 |
| Msa0342200 | Msa0726440 | 0.804054 | 2.596416e-49 | -8.615850e-47 |
| Msa0344070 | Msa0726440 | 0.820957 | 5.212581e-53 | -8.615850e-47 |
| Msa0344640 | Msa0726440 | 0.801025 | 1.093637e-48 | -8.615850e-47 |
| Msa0487910 | Msa0726440 | 0.819421 | 1.171712e-52 | -8.615850e-47 |
| Msa0514490 | Msa0726440 | 0.824743 | 6.840182e-54 | -8.615850e-47 |
| Msa0518520 | Msa0726440 | 0.819385 | 1.194439e-52 | -8.615850e-47 |
| Msa0524090 | Msa0726440 | 0.869385 | 3.220471e-66 | -8.615850e-47 |
| Msa0524120 | Msa0726440 | 0.857638 | 1.424571e-62 | -8.615850e-47 |
| Msa0535450 | Msa0726440 | 0.812130 | 4.948783e-51 | -8.615850e-47 |
| Msa0546380 | Msa0726440 | 0.808737 | 2.674198e-50 | -8.615850e-47 |
| Msa0546740 | Msa0726440 | 0.814802 | 1.279584e-51 | -8.615850e-47 |
| Msa0576420 | Msa0726440 | 0.808232 | 3.426033e-50 | -8.615850e-47 |
| Msa0581460 | Msa0726440 | 0.811631 | 6.356150e-51 | -8.615850e-47 |
| Msa0582110 | Msa0726440 | 0.811441 | 6.989904e-51 | -8.615850e-47 |
| Msa0596100 | Msa0726440 | 0.803876 | 2.827255e-49 | -8.615850e-47 |
| Msa0600390 | Msa0726440 | 0.804717 | 1.889006e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726440 | MtrunA17_Chr5g0418241 | 97.403 | 231 | 6 | 0 | 1 | 231 | 1 | 231 | 4.61e-168 | 462 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726440 | AT1G69390.1 | 59.746 | 236 | 80 | 7 | 1 | 228 | 1 | 229 | 1.15e-87 | 259 |
Find 89 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTACCGGTGAAGCCAATT+TGG | 0.231673 | 5_1:-27404207 | Msa0726440:three_prime_UTR |
| AAGATTAAGCACATTCTTCT+TGG | 0.244737 | 5_1:+27403897 | None:intergenic |
| TCATCCACCACTTGATATTC+TGG | 0.244756 | 5_1:+27404366 | None:intergenic |
| GTATGAATCATTGTTATAAA+TGG | 0.249805 | 5_1:-27404043 | Msa0726440:three_prime_UTR |
| TTTCTTTGAGCGTTTAAATT+TGG | 0.250395 | 5_1:-27404649 | Msa0726440:CDS |
| CTATCAACAATGGCGATTTC+CGG | 0.270969 | 5_1:-27406322 | Msa0726440:exon |
| AGAATGTGCTTAATCTTGTT+TGG | 0.283985 | 5_1:-27403891 | Msa0726440:three_prime_UTR |
| AATGGAGGGTCCTGCATATC+TGG | 0.296453 | 5_1:-27404825 | Msa0726440:CDS |
| TATCAAGTGGTGGATGAAAC+TGG | 0.298342 | 5_1:-27404360 | Msa0726440:CDS |
| GGAGAAAGTTCTCGGCTTCT+TGG | 0.300111 | 5_1:+27404691 | None:intergenic |
| GTGCTTCTGTTCACTGTTGC+AGG | 0.300844 | 5_1:+27406370 | None:intergenic |
| AAGGACACCGGAGATATTTC+AGG | 0.307382 | 5_1:-27404315 | Msa0726440:CDS |
| AATAACAAATATTGAGTATA+AGG | 0.315113 | 5_1:-27404334 | Msa0726440:CDS |
| GTCTCTGCAGATACAGATAT+TGG | 0.363379 | 5_1:-27404429 | Msa0726440:CDS |
| ATATATACAGCACTCCAAAT+TGG | 0.363721 | 5_1:+27404193 | None:intergenic |
| GTGGTGATTGAGGGGCAAAT+AGG | 0.365808 | 5_1:-27406401 | Msa0726440:five_prime_UTR |
| ATCAATGACTTTGGCTAGCC+AGG | 0.366756 | 5_1:+27403932 | None:intergenic |
| TGCAAATTGAAGCTTCCATT+AGG | 0.380280 | 5_1:-27404167 | Msa0726440:three_prime_UTR |
| ACACCTTTGATCTGTTAGTT+TGG | 0.380409 | 5_1:-27404111 | Msa0726440:three_prime_UTR |
| TAGATTTGATTTCTATGTTC+CGG | 0.386558 | 5_1:-27404280 | Msa0726440:CDS |
| GGGTTTCAAACACTGCCTTC+TGG | 0.387886 | 5_1:+27404228 | None:intergenic |
| GCAAATTGAAGCTTCCATTA+GGG | 0.389366 | 5_1:-27404166 | Msa0726440:three_prime_UTR |
| GAATGTGCTTAATCTTGTTT+GGG | 0.390240 | 5_1:-27403890 | Msa0726440:three_prime_UTR |
| GTTGTCATGGTGGAACGTTT+TGG | 0.395515 | 5_1:+27404795 | None:intergenic |
| AATCTAGTCACCCACCCTAA+TGG | 0.396342 | 5_1:+27404152 | None:intergenic |
| AGTTTGTAGTTGGTTCTCAT+TGG | 0.397303 | 5_1:-27404020 | Msa0726440:three_prime_UTR |
| TGGTGATTGAGGGGCAAATA+GGG | 0.402727 | 5_1:-27406400 | Msa0726440:five_prime_UTR |
| GCAGTGTTTGAAACCCTTAC+CGG | 0.421810 | 5_1:-27404221 | Msa0726440:three_prime_UTR |
| TTCTGGTTTAACTCGCCGTA+CGG | 0.421896 | 5_1:+27404383 | None:intergenic |
| AATCATCTTCAAACGTTGCT+TGG | 0.446164 | 5_1:+27404569 | None:intergenic |
| TTATAAATGGAGTTTGTAGT+TGG | 0.450054 | 5_1:-27404030 | Msa0726440:three_prime_UTR |
| CAAATTGGCTTCACCGGTAA+GGG | 0.451444 | 5_1:+27404208 | None:intergenic |
| AGGTATGGTAATGTTACTTA+AGG | 0.463813 | 5_1:+27403836 | None:intergenic |
| AAAGAGGTGGTTGGAAGGAG+AGG | 0.466613 | 5_1:+27406256 | None:intergenic |
| ATAACAATGATTCATACAAC+AGG | 0.467559 | 5_1:+27404049 | None:intergenic |
| CCAAATTGGCTTCACCGGTA+AGG | 0.467633 | 5_1:+27404207 | None:intergenic |
| GAAGAAAAGAGGTGGTTGGA+AGG | 0.472988 | 5_1:+27406251 | None:intergenic |
| GTTCTCATTGGTCTAATGAA+AGG | 0.478085 | 5_1:-27404008 | Msa0726440:three_prime_UTR |
| AGCATCAAGGAGAAAGTTCT+CGG | 0.480836 | 5_1:+27404683 | None:intergenic |
| GGAGGAAGAAAAGAGGTGGT+TGG | 0.485305 | 5_1:+27406247 | None:intergenic |
| AGAGGATGTGAGCGATGGAG+TGG | 0.486682 | 5_1:+27406274 | None:intergenic |
| CACATTCTTCTTGGTTTGCG+TGG | 0.489031 | 5_1:+27403906 | None:intergenic |
| TTCTCATTGGTCTAATGAAA+GGG | 0.489511 | 5_1:-27404007 | Msa0726440:three_prime_UTR |
| AACATTCAAGACGTTTCATC+CGG | 0.493535 | 5_1:+27404261 | None:intergenic |
| TTCATTGTTTCTTAAATGGA+GGG | 0.495949 | 5_1:-27404839 | Msa0726440:CDS |
| TGGGGTGAATCCAGATATGC+AGG | 0.499751 | 5_1:+27404815 | None:intergenic |
| GCGTGGAGCATCAATGACTT+TGG | 0.504716 | 5_1:+27403923 | None:intergenic |
| TTTCATTGTTTCTTAAATGG+AGG | 0.517610 | 5_1:-27404840 | Msa0726440:CDS |
| TCTGGTTTAACTCGCCGTAC+GGG | 0.521618 | 5_1:+27404384 | None:intergenic |
| TTGAGCGTTTAAATTTGGCT+TGG | 0.527703 | 5_1:-27404644 | Msa0726440:CDS |
| GAAGGAGAGGATGTGAGCGA+TGG | 0.527839 | 5_1:+27406269 | None:intergenic |
| CTAAGAAAAGCTCTGTTGCT+AGG | 0.531393 | 5_1:-27404596 | Msa0726440:CDS |
| GGGCACTGTAACAGAGTAGA+TGG | 0.531676 | 5_1:+27404404 | None:intergenic |
| GCACTCCAAATTGGCTTCAC+CGG | 0.537932 | 5_1:+27404202 | None:intergenic |
| AGAAGCACTGAAAATCCGTT+GGG | 0.545517 | 5_1:-27406355 | Msa0726440:five_prime_UTR |
| CGTACTGAAGTGGTGATTGA+GGG | 0.549426 | 5_1:-27406410 | Msa0726440:five_prime_UTR |
| AACAGAACCTGAAATATCTC+CGG | 0.549916 | 5_1:+27404308 | None:intergenic |
| CAGAAGCACTGAAAATCCGT+TGG | 0.550049 | 5_1:-27406356 | Msa0726440:five_prime_UTR |
| TGCAGTGACTCTAATGTCGC+CGG | 0.551915 | 5_1:+27406303 | None:intergenic |
| CCGCTGTAAGATACAAGGTA+TGG | 0.563058 | 5_1:+27403821 | None:intergenic |
| AATTGAAGCTTCCATTAGGG+TGG | 0.564383 | 5_1:-27404163 | Msa0726440:three_prime_UTR |
| CTAAAATCATGAATTCTCCC+TGG | 0.564988 | 5_1:-27403950 | Msa0726440:three_prime_UTR |
| ATTGCTTCGTGCAGTTGTCA+TGG | 0.566512 | 5_1:+27404782 | None:intergenic |
| ACGTACTGAAGTGGTGATTG+AGG | 0.572653 | 5_1:-27406411 | Msa0726440:five_prime_UTR |
| ATCAAGTGGTGGATGAAACT+GGG | 0.583073 | 5_1:-27404359 | Msa0726440:CDS |
| AAAAGGAACGATACCTTTGG+AGG | 0.585564 | 5_1:+27406229 | None:intergenic |
| TCAATGACTTTGGCTAGCCA+GGG | 0.585636 | 5_1:+27403933 | None:intergenic |
| AACTCATATTAACAGCATCA+AGG | 0.588920 | 5_1:+27404670 | None:intergenic |
| TTTAGTTTAACTAATCTGCC+CGG | 0.590980 | 5_1:+27403968 | None:intergenic |
| GTAAACCGCTGTAAGATACA+AGG | 0.595211 | 5_1:+27403816 | None:intergenic |
| ACTCTGTTACAGTGCCCGTA+CGG | 0.601541 | 5_1:-27404398 | Msa0726440:CDS |
| ATGTTGACTTCTTTGCCAGA+AGG | 0.604673 | 5_1:-27404243 | Msa0726440:three_prime_UTR |
| ATTGAAGCTTCCATTAGGGT+GGG | 0.608987 | 5_1:-27404162 | Msa0726440:three_prime_UTR |
| TACCTTTGGAGGAAGAAAAG+AGG | 0.614181 | 5_1:+27406240 | None:intergenic |
| AAACCAAACTAACAGATCAA+AGG | 0.617807 | 5_1:+27404108 | None:intergenic |
| GATAGCTTCGTATTTCCCAA+CGG | 0.621750 | 5_1:+27406340 | None:intergenic |
| AAAACGACGACGTACTGAAG+TGG | 0.627974 | 5_1:-27406420 | Msa0726440:five_prime_UTR |
| CCATACCTTGTATCTTACAG+CGG | 0.642706 | 5_1:-27403821 | Msa0726440:three_prime_UTR |
| TAAACCAGAATATCAAGTGG+TGG | 0.645335 | 5_1:-27404370 | Msa0726440:CDS |
| AAATACGAAGCTATCAACAA+TGG | 0.648522 | 5_1:-27406332 | Msa0726440:exon |
| ATGTTACTTAAGGAATGTCA+AGG | 0.653760 | 5_1:+27403846 | None:intergenic |
| ACTGCACGAAGCAATATCCA+TGG | 0.657163 | 5_1:-27404774 | Msa0726440:CDS |
| AATATTGAGTATAAGGACAC+CGG | 0.658119 | 5_1:-27404327 | Msa0726440:CDS |
| GTACTGAAGTGGTGATTGAG+GGG | 0.661959 | 5_1:-27406409 | Msa0726440:five_prime_UTR |
| CTTTGGAGGAAGAAAAGAGG+TGG | 0.662965 | 5_1:+27406243 | None:intergenic |
| AAACTGGCTTGTGATAGCCA+TGG | 0.667511 | 5_1:+27404757 | None:intergenic |
| GCTTCGTGCAGTTGTCATGG+TGG | 0.675130 | 5_1:+27404785 | None:intergenic |
| AGTTAAACCAGAATATCAAG+TGG | 0.711520 | 5_1:-27404373 | Msa0726440:CDS |
| TCGATGTGAAGTAAGCGATG+AGG | 0.726960 | 5_1:-27404535 | Msa0726440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATATTAATTTGTACAAA+TGG | + | chr5_1:27404940-27404959 | None:intergenic | 10.0% |
| !! | TAATTAGAGAAAAAAAGAAA+AGG | + | chr5_1:27404032-27404051 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTTTTCTCTAATT+AGG | - | chr5_1:27404031-27404050 | Msa0726440:three_prime_UTR | 15.0% |
| !!! | TTTCTTTTTTTCTCTAATTA+GGG | - | chr5_1:27404032-27404051 | Msa0726440:three_prime_UTR | 15.0% |
| !! | ATTTATGTATGTATTTAGTT+TGG | - | chr5_1:27404250-27404269 | Msa0726440:exon | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr5_1:27404325-27404344 | None:intergenic | 15.0% |
| !! | ATTTAAGTAATTATATGTGT+CGG | - | chr5_1:27404349-27404368 | Msa0726440:CDS | 15.0% |
| !! | ATAAATATAAGCTTAAAACA+TGG | + | chr5_1:27404500-27404519 | None:intergenic | 15.0% |
| !!! | ATGTTTTAAGCTTATATTTA+TGG | - | chr5_1:27404499-27404518 | Msa0726440:CDS | 15.0% |
| !!! | TGTAGTTTTTGTTAAAATTT+TGG | - | chr5_1:27404572-27404591 | Msa0726440:CDS | 15.0% |
| !! | TGTTTGATTAATAAAAATGA+AGG | - | chr5_1:27404710-27404729 | Msa0726440:CDS | 15.0% |
| !! | GTTTGATTAATAAAAATGAA+GGG | - | chr5_1:27404711-27404730 | Msa0726440:CDS | 15.0% |
| !! | TTTGATTAATAAAAATGAAG+GGG | - | chr5_1:27404712-27404731 | Msa0726440:CDS | 15.0% |
| !! | AATAACAAATATTGAGTATA+AGG | - | chr5_1:27405907-27405926 | Msa0726440:intron | 15.0% |
| !!! | TATTTTCTCTTGCAAATTAA+CGG | - | chr5_1:27404084-27404103 | Msa0726440:three_prime_UTR | 20.0% |
| !!! | TGTTACTGTTGTTTTAATAA+TGG | - | chr5_1:27404171-27404190 | Msa0726440:three_prime_UTR | 20.0% |
| !!! | GATTACAGTAATTGAAATTT+TGG | - | chr5_1:27404455-27404474 | Msa0726440:CDS | 20.0% |
| !!! | TTTTAACAAAAACTACACTT+GGG | + | chr5_1:27404569-27404588 | None:intergenic | 20.0% |
| !!! | ATTTTAACAAAAACTACACT+TGG | + | chr5_1:27404570-27404589 | None:intergenic | 20.0% |
| !!! | TTTTGTTAAAATTTTGGTAG+CGG | - | chr5_1:27404578-27404597 | Msa0726440:CDS | 20.0% |
| !!! | AACATGTGATATAATTTTCA+AGG | + | chr5_1:27404694-27404713 | None:intergenic | 20.0% |
| !!! | ATATTTAATTTAGATGCTTG+TGG | - | chr5_1:27405259-27405278 | Msa0726440:intron | 20.0% |
| !!! | AACATTTTGTAAATCTTGTA+AGG | + | chr5_1:27405337-27405356 | None:intergenic | 20.0% |
| !!! | GATTTTCATTGTTTCTTAAA+TGG | - | chr5_1:27405398-27405417 | Msa0726440:intron | 20.0% |
| !!! | ACTGTTTTTAACTTTATGAT+AGG | - | chr5_1:27406160-27406179 | Msa0726440:intron | 20.0% |
| !! | GTATGAATCATTGTTATAAA+TGG | - | chr5_1:27406198-27406217 | Msa0726440:intron | 20.0% |
| !!! | AATTTCAAGTTCAGAAATGT+TGG | - | chr5_1:27404226-27404245 | Msa0726440:three_prime_UTR | 25.0% |
| !!! | TGTATGTATTTAGTTTGGTT+TGG | - | chr5_1:27404255-27404274 | Msa0726440:exon | 25.0% |
| ! | TCAAACATGTACTAAAACTA+TGG | - | chr5_1:27404630-27404649 | Msa0726440:CDS | 25.0% |
| ! | TGTTATTGTCTAAACTCTAT+AGG | - | chr5_1:27404766-27404785 | Msa0726440:CDS | 25.0% |
| ! | TCACTATGTCCAATAATAAT+TGG | - | chr5_1:27404815-27404834 | Msa0726440:CDS | 25.0% |
| !! | GACAAATTTCTTTTGCAAAT+AGG | + | chr5_1:27404841-27404860 | None:intergenic | 25.0% |
| !!! | CTTTGAAACAAACTTATTCT+GGG | + | chr5_1:27404863-27404882 | None:intergenic | 25.0% |
| !!! | TTGAAAGCGTCAATTATTTT+AGG | + | chr5_1:27404891-27404910 | None:intergenic | 25.0% |
| !!! | AAAGTAGAAGGTATTGAATT+AGG | + | chr5_1:27404977-27404996 | None:intergenic | 25.0% |
| ! | AACACATATTTCCAATCAAA+TGG | + | chr5_1:27405060-27405079 | None:intergenic | 25.0% |
| !! | CCTTTTTGATATTCAGTATA+GGG | - | chr5_1:27405192-27405211 | Msa0726440:intron | 25.0% |
| !! | CTTTTTGATATTCAGTATAG+GGG | - | chr5_1:27405193-27405212 | Msa0726440:intron | 25.0% |
| ! | CAGAACAATTAAGATTAACA+AGG | + | chr5_1:27405367-27405386 | None:intergenic | 25.0% |
| !! | TTTCATTGTTTCTTAAATGG+AGG | - | chr5_1:27405401-27405420 | Msa0726440:intron | 25.0% |
| !! | TTCATTGTTTCTTAAATGGA+GGG | - | chr5_1:27405402-27405421 | Msa0726440:intron | 25.0% |
| ! | TTTCTTTGAGCGTTTAAATT+TGG | - | chr5_1:27405592-27405611 | Msa0726440:intron | 25.0% |
| !! | TAGATTTGATTTCTATGTTC+CGG | - | chr5_1:27405961-27405980 | Msa0726440:intron | 25.0% |
| ! | ATAACAATGATTCATACAAC+AGG | + | chr5_1:27406195-27406214 | None:intergenic | 25.0% |
| ! | TTATAAATGGAGTTTGTAGT+TGG | - | chr5_1:27406211-27406230 | Msa0726440:intron | 25.0% |
| AAATACGAAGCTATCAACAA+TGG | - | chr5_1:27403909-27403928 | Msa0726440:three_prime_UTR | 30.0% | |
| GCTTATATTTATGGTGAGTT+TGG | - | chr5_1:27404508-27404527 | Msa0726440:CDS | 30.0% | |
| AATAAAAATGAAGGGGAATG+AGG | - | chr5_1:27404719-27404738 | Msa0726440:CDS | 30.0% | |
| ACATAGTGAGTAATGAATTG+TGG | + | chr5_1:27404804-27404823 | None:intergenic | 30.0% | |
| GCAAATAGGCCAATTATTAT+TGG | + | chr5_1:27404827-27404846 | None:intergenic | 30.0% | |
| !! | GCTTTGAAACAAACTTATTC+TGG | + | chr5_1:27404864-27404883 | None:intergenic | 30.0% |
| TCCACTTTATTCCATTTGAT+TGG | - | chr5_1:27405046-27405065 | Msa0726440:intron | 30.0% | |
| TCCAATCAAATGGAATAAAG+TGG | + | chr5_1:27405050-27405069 | None:intergenic | 30.0% | |
| ! | GCCTTTTTGATATTCAGTAT+AGG | - | chr5_1:27405191-27405210 | Msa0726440:intron | 30.0% |
| CCCTATACTGAATATCAAAA+AGG | + | chr5_1:27405195-27405214 | None:intergenic | 30.0% | |
| TCTTAATTGTTCTGTCTAAC+AGG | - | chr5_1:27405373-27405392 | Msa0726440:intron | 30.0% | |
| ATGAAAAATTAGAACCTCCA+AGG | + | chr5_1:27405517-27405536 | None:intergenic | 30.0% | |
| AACTCATATTAACAGCATCA+AGG | + | chr5_1:27405574-27405593 | None:intergenic | 30.0% | |
| AGTTAAACCAGAATATCAAG+TGG | - | chr5_1:27405868-27405887 | Msa0726440:intron | 30.0% | |
| AATATTGAGTATAAGGACAC+CGG | - | chr5_1:27405914-27405933 | Msa0726440:intron | 30.0% | |
| ATATATACAGCACTCCAAAT+TGG | + | chr5_1:27406051-27406070 | None:intergenic | 30.0% | |
| AAACCAAACTAACAGATCAA+AGG | + | chr5_1:27406136-27406155 | None:intergenic | 30.0% | |
| ! | TTCTCATTGGTCTAATGAAA+GGG | - | chr5_1:27406234-27406253 | Msa0726440:intron | 30.0% |
| ! | TTTAGTTTAACTAATCTGCC+CGG | + | chr5_1:27406276-27406295 | None:intergenic | 30.0% |
| AAGATTAAGCACATTCTTCT+TGG | + | chr5_1:27406347-27406366 | None:intergenic | 30.0% | |
| AGAATGTGCTTAATCTTGTT+TGG | - | chr5_1:27406350-27406369 | Msa0726440:five_prime_UTR | 30.0% | |
| ! | GAATGTGCTTAATCTTGTTT+GGG | - | chr5_1:27406351-27406370 | Msa0726440:five_prime_UTR | 30.0% |
| ! | ATGTTACTTAAGGAATGTCA+AGG | + | chr5_1:27406398-27406417 | None:intergenic | 30.0% |
| ! | AGGTATGGTAATGTTACTTA+AGG | + | chr5_1:27406408-27406427 | None:intergenic | 30.0% |
| AAGAAAAGGAACGATACCTT+TGG | + | chr5_1:27404018-27404037 | None:intergenic | 35.0% | |
| !! | CAAATTATTATCGGTGTCGA+CGG | + | chr5_1:27404316-27404335 | None:intergenic | 35.0% |
| AATGAAGCACAAATACTCCT+TGG | + | chr5_1:27404421-27404440 | None:intergenic | 35.0% | |
| !! | ATTGACGCTTTCAAGTTTGA+AGG | - | chr5_1:27404897-27404916 | Msa0726440:intron | 35.0% |
| !! | AGAAGGTATTGAATTAGGAG+TGG | + | chr5_1:27404972-27404991 | None:intergenic | 35.0% |
| AGTTCTCGTCTTAGAGAAAT+TGG | - | chr5_1:27405094-27405113 | Msa0726440:intron | 35.0% | |
| TTAATTTAGATGCTTGTGGC+TGG | - | chr5_1:27405263-27405282 | Msa0726440:intron | 35.0% | |
| TTGAGCGTTTAAATTTGGCT+TGG | - | chr5_1:27405597-27405616 | Msa0726440:intron | 35.0% | |
| ! | TTTTCTTAGACACTGCTGAT+GGG | + | chr5_1:27405634-27405653 | None:intergenic | 35.0% |
| AATCATCTTCAAACGTTGCT+TGG | + | chr5_1:27405675-27405694 | None:intergenic | 35.0% | |
| TAAACCAGAATATCAAGTGG+TGG | - | chr5_1:27405871-27405890 | Msa0726440:intron | 35.0% | |
| AACAGAACCTGAAATATCTC+CGG | + | chr5_1:27405936-27405955 | None:intergenic | 35.0% | |
| AACATTCAAGACGTTTCATC+CGG | + | chr5_1:27405983-27406002 | None:intergenic | 35.0% | |
| TGCAAATTGAAGCTTCCATT+AGG | - | chr5_1:27406074-27406093 | Msa0726440:intron | 35.0% | |
| GCAAATTGAAGCTTCCATTA+GGG | - | chr5_1:27406075-27406094 | Msa0726440:intron | 35.0% | |
| ACACCTTTGATCTGTTAGTT+TGG | - | chr5_1:27406130-27406149 | Msa0726440:intron | 35.0% | |
| ! | AGTTTGTAGTTGGTTCTCAT+TGG | - | chr5_1:27406221-27406240 | Msa0726440:intron | 35.0% |
| ! | GTTCTCATTGGTCTAATGAA+AGG | - | chr5_1:27406233-27406252 | Msa0726440:intron | 35.0% |
| CTAAAATCATGAATTCTCCC+TGG | - | chr5_1:27406291-27406310 | Msa0726440:CDS | 35.0% | |
| !! | AGAAGCACTGAAAATCCGTT+GGG | - | chr5_1:27403886-27403905 | Msa0726440:three_prime_UTR | 40.0% |
| GATAGCTTCGTATTTCCCAA+CGG | + | chr5_1:27403904-27403923 | None:intergenic | 40.0% | |
| CTATCAACAATGGCGATTTC+CGG | - | chr5_1:27403919-27403938 | Msa0726440:three_prime_UTR | 40.0% | |
| ! | TACCTTTGGAGGAAGAAAAG+AGG | + | chr5_1:27404004-27404023 | None:intergenic | 40.0% |
| AAAAGGAACGATACCTTTGG+AGG | + | chr5_1:27404015-27404034 | None:intergenic | 40.0% | |
| !!! | GCAAATTAACGGTGCTGTTT+TGG | - | chr5_1:27404095-27404114 | Msa0726440:three_prime_UTR | 40.0% |
| ACTCGATACATATCCAACAC+CGG | - | chr5_1:27404384-27404403 | Msa0726440:CDS | 40.0% | |
| TGAGTTTGGAGAAGTTATCG+TGG | - | chr5_1:27404522-27404541 | Msa0726440:CDS | 40.0% | |
| GAGTTTGGAGAAGTTATCGT+GGG | - | chr5_1:27404523-27404542 | Msa0726440:CDS | 40.0% | |
| CACTGATACTTTGGTCTAGA+GGG | + | chr5_1:27405009-27405028 | None:intergenic | 40.0% | |
| TATGCACTCCACTGATACTT+TGG | + | chr5_1:27405018-27405037 | None:intergenic | 40.0% | |
| AGCAACTGATCAGCATAGAA+AGG | + | chr5_1:27405146-27405165 | None:intergenic | 40.0% | |
| !! | TTGTCATGGTGGAACGTTTT+GGG | + | chr5_1:27405448-27405467 | None:intergenic | 40.0% |
| AGCATCAAGGAGAAAGTTCT+CGG | + | chr5_1:27405561-27405580 | None:intergenic | 40.0% | |
| ! | CTTTTCTTAGACACTGCTGA+TGG | + | chr5_1:27405635-27405654 | None:intergenic | 40.0% |
| CTAAGAAAAGCTCTGTTGCT+AGG | - | chr5_1:27405645-27405664 | Msa0726440:intron | 40.0% | |
| GTCTCTGCAGATACAGATAT+TGG | - | chr5_1:27405812-27405831 | Msa0726440:intron | 40.0% | |
| TCATCCACCACTTGATATTC+TGG | + | chr5_1:27405878-27405897 | None:intergenic | 40.0% | |
| !! | TATCAAGTGGTGGATGAAAC+TGG | - | chr5_1:27405881-27405900 | Msa0726440:intron | 40.0% |
| !! | ATCAAGTGGTGGATGAAACT+GGG | - | chr5_1:27405882-27405901 | Msa0726440:intron | 40.0% |
| !! | ATGTTGACTTCTTTGCCAGA+AGG | - | chr5_1:27405998-27406017 | Msa0726440:intron | 40.0% |
| AATTGAAGCTTCCATTAGGG+TGG | - | chr5_1:27406078-27406097 | Msa0726440:intron | 40.0% | |
| ATTGAAGCTTCCATTAGGGT+GGG | - | chr5_1:27406079-27406098 | Msa0726440:intron | 40.0% | |
| AAAACGACGACGTACTGAAG+TGG | - | chr5_1:27403821-27403840 | Msa0726440:three_prime_UTR | 45.0% | |
| ACGTACTGAAGTGGTGATTG+AGG | - | chr5_1:27403830-27403849 | Msa0726440:three_prime_UTR | 45.0% | |
| CGTACTGAAGTGGTGATTGA+GGG | - | chr5_1:27403831-27403850 | Msa0726440:three_prime_UTR | 45.0% | |
| GTACTGAAGTGGTGATTGAG+GGG | - | chr5_1:27403832-27403851 | Msa0726440:three_prime_UTR | 45.0% | |
| TGGTGATTGAGGGGCAAATA+GGG | - | chr5_1:27403841-27403860 | Msa0726440:three_prime_UTR | 45.0% | |
| !! | CAGAAGCACTGAAAATCCGT+TGG | - | chr5_1:27403885-27403904 | Msa0726440:three_prime_UTR | 45.0% |
| GAAGAAAAGAGGTGGTTGGA+AGG | + | chr5_1:27403993-27404012 | None:intergenic | 45.0% | |
| ! | CTTTGGAGGAAGAAAAGAGG+TGG | + | chr5_1:27404001-27404020 | None:intergenic | 45.0% |
| ! | CACCTCTTTTCTTCCTCCAA+AGG | - | chr5_1:27403999-27404018 | Msa0726440:three_prime_UTR | 45.0% |
| TGAAGCAACAACTCAGACAC+CGG | - | chr5_1:27404287-27404306 | Msa0726440:CDS | 45.0% | |
| CTCGATACATATCCAACACC+GGG | - | chr5_1:27404385-27404404 | Msa0726440:CDS | 45.0% | |
| GGGACACGGAATAAAGTAGA+AGG | + | chr5_1:27404989-27405008 | None:intergenic | 45.0% | |
| TACTTTGGTCTAGAGGGACA+CGG | + | chr5_1:27405003-27405022 | None:intergenic | 45.0% | |
| CCACTGATACTTTGGTCTAG+AGG | + | chr5_1:27405010-27405029 | None:intergenic | 45.0% | |
| ! | CCTCTAGACCAAAGTATCAG+TGG | - | chr5_1:27405007-27405026 | Msa0726440:intron | 45.0% |
| TGCTGATCAGTTGCTAACAG+AGG | - | chr5_1:27405151-27405170 | Msa0726440:intron | 45.0% | |
| !! | TGTCATGGTGGAACGTTTTG+GGG | + | chr5_1:27405447-27405466 | None:intergenic | 45.0% |
| !! | GTTGTCATGGTGGAACGTTT+TGG | + | chr5_1:27405449-27405468 | None:intergenic | 45.0% |
| ATTGCTTCGTGCAGTTGTCA+TGG | + | chr5_1:27405462-27405481 | None:intergenic | 45.0% | |
| ACTGCACGAAGCAATATCCA+TGG | - | chr5_1:27405467-27405486 | Msa0726440:intron | 45.0% | |
| !! | AAACTGGCTTGTGATAGCCA+TGG | + | chr5_1:27405487-27405506 | None:intergenic | 45.0% |
| ! | AAGCCAGTTTTTGCAGTCCT+TGG | - | chr5_1:27405497-27405516 | Msa0726440:intron | 45.0% |
| TCGATGTGAAGTAAGCGATG+AGG | - | chr5_1:27405706-27405725 | Msa0726440:intron | 45.0% | |
| ! | GCGTGCTCTATCAGATTTTG+TGG | - | chr5_1:27405757-27405776 | Msa0726440:intron | 45.0% |
| !! | TTCTGGTTTAACTCGCCGTA+CGG | + | chr5_1:27405861-27405880 | None:intergenic | 45.0% |
| AAGGACACCGGAGATATTTC+AGG | - | chr5_1:27405926-27405945 | Msa0726440:intron | 45.0% | |
| ! | GCAGTGTTTGAAACCCTTAC+CGG | - | chr5_1:27406020-27406039 | Msa0726440:intron | 45.0% |
| ! | CAAATTGGCTTCACCGGTAA+GGG | + | chr5_1:27406036-27406055 | None:intergenic | 45.0% |
| AATCTAGTCACCCACCCTAA+TGG | + | chr5_1:27406092-27406111 | None:intergenic | 45.0% | |
| ! | TCAATGACTTTGGCTAGCCA+GGG | + | chr5_1:27406311-27406330 | None:intergenic | 45.0% |
| ! | ATCAATGACTTTGGCTAGCC+AGG | + | chr5_1:27406312-27406331 | None:intergenic | 45.0% |
| !! | CACATTCTTCTTGGTTTGCG+TGG | + | chr5_1:27406338-27406357 | None:intergenic | 45.0% |
| CCGCTGTAAGATACAAGGTA+TGG | + | chr5_1:27406423-27406442 | None:intergenic | 45.0% | |
| GTGGTGATTGAGGGGCAAAT+AGG | - | chr5_1:27403840-27403859 | Msa0726440:three_prime_UTR | 50.0% | |
| GTGCTTCTGTTCACTGTTGC+AGG | + | chr5_1:27403874-27403893 | None:intergenic | 50.0% | |
| TGCAGTGACTCTAATGTCGC+CGG | + | chr5_1:27403941-27403960 | None:intergenic | 50.0% | |
| AAAGAGGTGGTTGGAAGGAG+AGG | + | chr5_1:27403988-27404007 | None:intergenic | 50.0% | |
| GGAGGAAGAAAAGAGGTGGT+TGG | + | chr5_1:27403997-27404016 | None:intergenic | 50.0% | |
| CTCCTTGGATTATGCTGTCC+CGG | + | chr5_1:27404406-27404425 | None:intergenic | 50.0% | |
| AATGGAGGGTCCTGCATATC+TGG | - | chr5_1:27405416-27405435 | Msa0726440:intron | 50.0% | |
| TGGGGTGAATCCAGATATGC+AGG | + | chr5_1:27405429-27405448 | None:intergenic | 50.0% | |
| CCTCCAAGGACTGCAAAAAC+TGG | + | chr5_1:27405503-27405522 | None:intergenic | 50.0% | |
| ! | CCAGTTTTTGCAGTCCTTGG+AGG | - | chr5_1:27405500-27405519 | Msa0726440:intron | 50.0% |
| GGAGAAAGTTCTCGGCTTCT+TGG | + | chr5_1:27405553-27405572 | None:intergenic | 50.0% | |
| ! | GGGCACTGTAACAGAGTAGA+TGG | + | chr5_1:27405840-27405859 | None:intergenic | 50.0% |
| ACTCTGTTACAGTGCCCGTA+CGG | - | chr5_1:27405843-27405862 | Msa0726440:intron | 50.0% | |
| ! | TCTGGTTTAACTCGCCGTAC+GGG | + | chr5_1:27405860-27405879 | None:intergenic | 50.0% |
| GGGTTTCAAACACTGCCTTC+TGG | + | chr5_1:27406016-27406035 | None:intergenic | 50.0% | |
| ! | CCAAATTGGCTTCACCGGTA+AGG | + | chr5_1:27406037-27406056 | None:intergenic | 50.0% |
| CCTTACCGGTGAAGCCAATT+TGG | - | chr5_1:27406034-27406053 | Msa0726440:intron | 50.0% | |
| ! | GCACTCCAAATTGGCTTCAC+CGG | + | chr5_1:27406042-27406061 | None:intergenic | 50.0% |
| !! | GGGAGCTGACAGTTTTAGTC+CGG | - | chr5_1:27406254-27406273 | Msa0726440:CDS | 50.0% |
| !! | GGAGCTGACAGTTTTAGTCC+GGG | - | chr5_1:27406255-27406274 | Msa0726440:CDS | 50.0% |
| ! | GCGTGGAGCATCAATGACTT+TGG | + | chr5_1:27406321-27406340 | None:intergenic | 50.0% |
| AGAGGATGTGAGCGATGGAG+TGG | + | chr5_1:27403970-27403989 | None:intergenic | 55.0% | |
| GAAGGAGAGGATGTGAGCGA+TGG | + | chr5_1:27403975-27403994 | None:intergenic | 55.0% | |
| !! | TTATCGGTGTCGACGGTGTC+CGG | + | chr5_1:27404309-27404328 | None:intergenic | 55.0% |
| GGATTATGCTGTCCCGGTGT+TGG | + | chr5_1:27404400-27404419 | None:intergenic | 55.0% | |
| CACCGGGACAGCATAATCCA+AGG | - | chr5_1:27404401-27404420 | Msa0726440:CDS | 55.0% | |
| GCTTCGTGCAGTTGTCATGG+TGG | + | chr5_1:27405459-27405478 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 27403821 | 27406442 | 27403821 | ID=Msa0726440;Name=Msa0726440 |
| chr5_1 | mRNA | 27403821 | 27406442 | 27403821 | ID=Msa0726440-mRNA-1;Parent=Msa0726440;Name=Msa0726440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=107|1|1|1|1|1|2|445|231 |
| chr5_1 | exon | 27403821 | 27404868 | 27403821 | ID=Msa0726440-mRNA-1:exon:9643;Parent=Msa0726440-mRNA-1 |
| chr5_1 | exon | 27406243 | 27406442 | 27406243 | ID=Msa0726440-mRNA-1:exon:9642;Parent=Msa0726440-mRNA-1 |
| chr5_1 | five_prime_UTR | 27406336 | 27406442 | 27406336 | ID=Msa0726440-mRNA-1:five_prime_utr;Parent=Msa0726440-mRNA-1 |
| chr5_1 | CDS | 27406243 | 27406335 | 27406243 | ID=Msa0726440-mRNA-1:cds;Parent=Msa0726440-mRNA-1 |
| chr5_1 | CDS | 27404266 | 27404868 | 27404266 | ID=Msa0726440-mRNA-1:cds;Parent=Msa0726440-mRNA-1 |
| chr5_1 | three_prime_UTR | 27403821 | 27404265 | 27403821 | ID=Msa0726440-mRNA-1:three_prime_utr;Parent=Msa0726440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
