AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524090 MtrunA17_Chr3g0145361 90.678 236 10 4 1 231 1 229 3.74e-135 379
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524090 AT4G34730.2 60.619 226 75 1 6 231 4 215 7.71e-89 261
Msa0524090 AT4G34730.3 60.619 226 75 1 6 231 4 215 7.71e-89 261
Msa0524090 AT4G34730.1 60.619 226 75 1 6 231 4 215 7.71e-89 261

Find 47 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTCACTGCGAACATATT+TGG 0.167187 3_4:+77554655 None:intergenic
CGGTCACACTCACACCTTAT+TGG 0.249517 3_4:-77555556 Msa0524090:CDS
TGAAATCACCGCTGATTTAC+AGG 0.294810 3_4:-77555279 Msa0524090:intron
GGCAAATTGCAAGACGTTAT+CGG 0.368809 3_4:+77555367 None:intergenic
GGGAAGGAAGTGGCCATGGC+TGG 0.375787 3_4:-77554692 Msa0524090:CDS
GTTCTTCCTGAAGCTTCCTT+AGG 0.384742 3_4:-77555344 Msa0524090:CDS
CGATTGTTACATCGCCAATA+AGG 0.390299 3_4:+77555542 None:intergenic
AAGTTCTCTCCGAATTTGTT+TGG 0.408703 3_4:+77555406 None:intergenic
TCAGCACCTAAGGAAGCTTC+AGG 0.415676 3_4:+77555338 None:intergenic
ACATAAATGATACCTTCTTC+AGG 0.417511 3_4:+77553474 None:intergenic
GAATCCAAGGAGAGTCAAAA+TGG 0.420166 3_4:-77555432 Msa0524090:CDS
AAATGGTTGCCAAACAAATT+CGG 0.421978 3_4:-77555415 Msa0524090:CDS
CAGATGAAGACGATGCTGAT+TGG 0.423415 3_4:-77553509 Msa0524090:CDS
AGATGAAGACGATGCTGATT+GGG 0.431019 3_4:-77553508 Msa0524090:CDS
CAAATATGTTCGCAGTGAGC+TGG 0.434761 3_4:-77554654 Msa0524090:CDS
GAGGTAAGAATCAGCACCTA+AGG 0.457882 3_4:+77555328 None:intergenic
AATAATGAGGATAAAGTGTA+TGG 0.478393 3_4:-77555456 Msa0524090:CDS
AAATATGTTCGCAGTGAGCT+GGG 0.480220 3_4:-77554653 Msa0524090:CDS
CATAAATGATACCTTCTTCA+GGG 0.510113 3_4:+77553475 None:intergenic
TGAAGAAGGTATCATTTATG+TGG 0.517227 3_4:-77553472 Msa0524090:CDS
GGTGATTTCAACGTCGGTGA+TGG 0.525546 3_4:+77555292 None:intergenic
GGAAGGAAGTGGCCATGGCT+GGG 0.525786 3_4:-77554691 Msa0524090:CDS
AGGCGTGAGTGGGTCCTCAC+AGG 0.545237 3_4:-77555491 Msa0524090:CDS
TTCAGACTCAGAGGCGTGAG+TGG 0.556986 3_4:-77555502 Msa0524090:CDS
ATGTTCGCAGTGAGCTGGGG+AGG 0.560949 3_4:-77554649 Msa0524090:CDS
AGATGAAAGAGGGAAGGAAG+TGG 0.566160 3_4:-77554702 Msa0524090:CDS
GAAGATGAAGACCCTGAAGA+AGG 0.579729 3_4:-77553486 Msa0524090:CDS
AAGAGGGAAGGAAGTGGCCA+TGG 0.582663 3_4:-77554696 Msa0524090:CDS
AACGTCGGTGATGGTGGTGA+CGG 0.583949 3_4:+77555301 None:intergenic
TAAAGTGTATGGCGAATCCA+AGG 0.594849 3_4:-77555445 Msa0524090:CDS
TAAGGAAGCTTCAGGAAGAA+CGG 0.601825 3_4:+77555346 None:intergenic
TTCTTGAAGCATTTCCTGTG+AGG 0.605345 3_4:+77555477 None:intergenic
TGGGGAGGCGTATGAAGTTG+CGG 0.611509 3_4:-77554634 Msa0524090:CDS
GATTTCAACGTCGGTGATGG+TGG 0.617438 3_4:+77555295 None:intergenic
TGATGGTGGTGACGGAAGAG+AGG 0.626472 3_4:+77555309 None:intergenic
TCAGACTCAGAGGCGTGAGT+GGG 0.627258 3_4:-77555501 Msa0524090:CDS
AATATGTTCGCAGTGAGCTG+GGG 0.638575 3_4:-77554652 Msa0524090:CDS
GACGCAATTGCTTCACACCG+CGG 0.639535 3_4:-77555594 Msa0524090:CDS
GAAATGCTTCAAGAATAATG+AGG 0.641725 3_4:-77555469 Msa0524090:CDS
CGATGGTATCAGTGCAGCCG+CGG 0.642361 3_4:+77555577 None:intergenic
CAGTTGGATTCATCAGTGAA+CGG 0.643319 3_4:-77553561 Msa0524090:CDS
CGCGGCTGCACTGATACCAT+CGG 0.650425 3_4:-77555576 Msa0524090:CDS
CTGAGTCTGAAATATAGTTG+CGG 0.652164 3_4:+77555514 None:intergenic
ATCAGCGGTGATTTCAACGT+CGG 0.653697 3_4:+77555286 None:intergenic
CAACTATATTTCAGACTCAG+AGG 0.662061 3_4:-77555511 Msa0524090:CDS
AATAAGAACCTGTAAATCAG+CGG 0.693763 3_4:+77555271 None:intergenic
TAAGGTGTGAGTGTGACCGA+TGG 0.711224 3_4:+77555560 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTTGAATTTATACAT+TGG - chr3_4:77554067-77554086 Msa0524090:intron 10.0%
!! AACATATAGAAAAAAATATA+AGG + chr3_4:77554780-77554799 None:intergenic 10.0%
!! TAATATTTGAATTTATACAT+TGG - chr3_4:77554067-77554086 Msa0524090:intron 10.0%
!! AACATATAGAAAAAAATATA+AGG + chr3_4:77554780-77554799 None:intergenic 10.0%
!! ATTAAATGAGAAAAATGAAA+AGG + chr3_4:77554220-77554239 None:intergenic 15.0%
!! ATCATGAAACAAAATAAATA+AGG + chr3_4:77554264-77554283 None:intergenic 15.0%
!!! CATATTCGTTAATTTTAAAA+AGG - chr3_4:77555210-77555229 Msa0524090:intron 15.0%
!! TGCTTAAATATATAAAAGAA+TGG + chr3_4:77555347-77555366 None:intergenic 15.0%
!! ATTAAATGAGAAAAATGAAA+AGG + chr3_4:77554220-77554239 None:intergenic 15.0%
!! ATCATGAAACAAAATAAATA+AGG + chr3_4:77554264-77554283 None:intergenic 15.0%
!!! CATATTCGTTAATTTTAAAA+AGG - chr3_4:77555210-77555229 Msa0524090:intron 15.0%
!! TGCTTAAATATATAAAAGAA+TGG + chr3_4:77555347-77555366 None:intergenic 15.0%
!! GAATTATCACACTATAAATT+CGG + chr3_4:77553851-77553870 None:intergenic 20.0%
!!! TATACATTGGTTAAAAAGTA+TGG - chr3_4:77554080-77554099 Msa0524090:intron 20.0%
!!! ATATTTACCGTTTCTTTTTA+CGG - chr3_4:77554524-77554543 Msa0524090:intron 20.0%
!! TCATCAGGAAAATAAAAATA+AGG + chr3_4:77555090-77555109 None:intergenic 20.0%
!! AAGATAAAAAAAGATTTCAG+CGG + chr3_4:77555183-77555202 None:intergenic 20.0%
!! GAATTATCACACTATAAATT+CGG + chr3_4:77553851-77553870 None:intergenic 20.0%
!!! TATACATTGGTTAAAAAGTA+TGG - chr3_4:77554080-77554099 Msa0524090:intron 20.0%
!!! ATATTTACCGTTTCTTTTTA+CGG - chr3_4:77554524-77554543 Msa0524090:intron 20.0%
!! TCATCAGGAAAATAAAAATA+AGG + chr3_4:77555090-77555109 None:intergenic 20.0%
!! AAGATAAAAAAAGATTTCAG+CGG + chr3_4:77555183-77555202 None:intergenic 20.0%
! AATAATGAGGATAAAGTGTA+TGG - chr3_4:77553613-77553632 Msa0524090:CDS 25.0%
! TTTATAGTGTGATAATTCAG+TGG - chr3_4:77553853-77553872 Msa0524090:intron 25.0%
! CTCATTTAATCTAGTGTATT+TGG - chr3_4:77554230-77554249 Msa0524090:intron 25.0%
! TCTATCTACCATATATATGT+TGG - chr3_4:77554828-77554847 Msa0524090:intron 25.0%
! AGTGATACATAAGAATAAGA+TGG - chr3_4:77554968-77554987 Msa0524090:intron 25.0%
!! TATTCAAACAATGCTTTTGA+GGG - chr3_4:77555034-77555053 Msa0524090:intron 25.0%
! TATATATTTAAGCAGCTTCT+TGG - chr3_4:77555353-77555372 Msa0524090:CDS 25.0%
! AATAATGAGGATAAAGTGTA+TGG - chr3_4:77553613-77553632 Msa0524090:CDS 25.0%
! TTTATAGTGTGATAATTCAG+TGG - chr3_4:77553853-77553872 Msa0524090:intron 25.0%
! CTCATTTAATCTAGTGTATT+TGG - chr3_4:77554230-77554249 Msa0524090:intron 25.0%
! TCTATCTACCATATATATGT+TGG - chr3_4:77554828-77554847 Msa0524090:intron 25.0%
! AGTGATACATAAGAATAAGA+TGG - chr3_4:77554968-77554987 Msa0524090:intron 25.0%
!! TATTCAAACAATGCTTTTGA+GGG - chr3_4:77555034-77555053 Msa0524090:intron 25.0%
! TATATATTTAAGCAGCTTCT+TGG - chr3_4:77555353-77555372 Msa0524090:CDS 25.0%
GAAATGCTTCAAGAATAATG+AGG - chr3_4:77553600-77553619 Msa0524090:CDS 30.0%
AAATGGTTGCCAAACAAATT+CGG - chr3_4:77553654-77553673 Msa0524090:intron 30.0%
AATAAGAACCTGTAAATCAG+CGG + chr3_4:77553801-77553820 None:intergenic 30.0%
TTATCACACTATAAATTCGG+CGG + chr3_4:77553848-77553867 None:intergenic 30.0%
!!! GACATGTATTTTGAAACAGA+GGG + chr3_4:77553914-77553933 None:intergenic 30.0%
!! AGTGGACATGTATTTTGAAA+TGG - chr3_4:77554139-77554158 Msa0524090:intron 30.0%
!!! GACATGTATTTTGAAATGGA+GGG - chr3_4:77554143-77554162 Msa0524090:intron 30.0%
AGAAAAATGAAAAGGCAATG+TGG + chr3_4:77554212-77554231 None:intergenic 30.0%
! TAACTCAACACTTTTAGTGT+AGG - chr3_4:77554316-77554335 Msa0524090:intron 30.0%
!! AGTTTTAGTAGTAGACTAGA+AGG + chr3_4:77554634-77554653 None:intergenic 30.0%
AAGAACCATCTCATAATTGT+GGG + chr3_4:77554899-77554918 None:intergenic 30.0%
TAAGAACCATCTCATAATTG+TGG + chr3_4:77554900-77554919 None:intergenic 30.0%
ATTATGAGATGGTTCTTACT+AGG - chr3_4:77554902-77554921 Msa0524090:intron 30.0%
! CTATTCAAACAATGCTTTTG+AGG - chr3_4:77555033-77555052 Msa0524090:intron 30.0%
! ATTCAAACAATGCTTTTGAG+GGG - chr3_4:77555035-77555054 Msa0524090:intron 30.0%
!! TTTTCCTGATGATGAAATTG+TGG - chr3_4:77555098-77555117 Msa0524090:intron 30.0%
! TTTCCTGATGATGAAATTGT+GGG - chr3_4:77555099-77555118 Msa0524090:intron 30.0%
TATCTAATATTGCAATGACC+TGG + chr3_4:77555447-77555466 None:intergenic 30.0%
CATAAATGATACCTTCTTCA+GGG + chr3_4:77555597-77555616 None:intergenic 30.0%
ACATAAATGATACCTTCTTC+AGG + chr3_4:77555598-77555617 None:intergenic 30.0%
!! TGAAGAAGGTATCATTTATG+TGG - chr3_4:77555597-77555616 Msa0524090:CDS 30.0%
GAAATGCTTCAAGAATAATG+AGG - chr3_4:77553600-77553619 Msa0524090:CDS 30.0%
AAATGGTTGCCAAACAAATT+CGG - chr3_4:77553654-77553673 Msa0524090:intron 30.0%
AATAAGAACCTGTAAATCAG+CGG + chr3_4:77553801-77553820 None:intergenic 30.0%
TTATCACACTATAAATTCGG+CGG + chr3_4:77553848-77553867 None:intergenic 30.0%
!!! GACATGTATTTTGAAACAGA+GGG + chr3_4:77553914-77553933 None:intergenic 30.0%
!! AGTGGACATGTATTTTGAAA+TGG - chr3_4:77554139-77554158 Msa0524090:intron 30.0%
!!! GACATGTATTTTGAAATGGA+GGG - chr3_4:77554143-77554162 Msa0524090:intron 30.0%
AGAAAAATGAAAAGGCAATG+TGG + chr3_4:77554212-77554231 None:intergenic 30.0%
! TAACTCAACACTTTTAGTGT+AGG - chr3_4:77554316-77554335 Msa0524090:intron 30.0%
!! AGTTTTAGTAGTAGACTAGA+AGG + chr3_4:77554634-77554653 None:intergenic 30.0%
AAGAACCATCTCATAATTGT+GGG + chr3_4:77554899-77554918 None:intergenic 30.0%
TAAGAACCATCTCATAATTG+TGG + chr3_4:77554900-77554919 None:intergenic 30.0%
ATTATGAGATGGTTCTTACT+AGG - chr3_4:77554902-77554921 Msa0524090:intron 30.0%
! CTATTCAAACAATGCTTTTG+AGG - chr3_4:77555033-77555052 Msa0524090:intron 30.0%
! ATTCAAACAATGCTTTTGAG+GGG - chr3_4:77555035-77555054 Msa0524090:intron 30.0%
!! TTTTCCTGATGATGAAATTG+TGG - chr3_4:77555098-77555117 Msa0524090:intron 30.0%
! TTTCCTGATGATGAAATTGT+GGG - chr3_4:77555099-77555118 Msa0524090:intron 30.0%
TATCTAATATTGCAATGACC+TGG + chr3_4:77555447-77555466 None:intergenic 30.0%
CATAAATGATACCTTCTTCA+GGG + chr3_4:77555597-77555616 None:intergenic 30.0%
ACATAAATGATACCTTCTTC+AGG + chr3_4:77555598-77555617 None:intergenic 30.0%
!! TGAAGAAGGTATCATTTATG+TGG - chr3_4:77555597-77555616 Msa0524090:CDS 30.0%
! CTGAGTCTGAAATATAGTTG+CGG + chr3_4:77553558-77553577 None:intergenic 35.0%
CAACTATATTTCAGACTCAG+AGG - chr3_4:77553558-77553577 Msa0524090:CDS 35.0%
! AAGTTCTCTCCGAATTTGTT+TGG + chr3_4:77553666-77553685 None:intergenic 35.0%
!!! GGACATGTATTTTGAAACAG+AGG + chr3_4:77553915-77553934 None:intergenic 35.0%
CATATGTGAAGTAGTTGACT+TGG + chr3_4:77553936-77553955 None:intergenic 35.0%
TAACGGTCAAAATTGTGCAT+TGG + chr3_4:77553959-77553978 None:intergenic 35.0%
ATAGTGCACATTGCAAAAAG+TGG - chr3_4:77554121-77554140 Msa0524090:intron 35.0%
!!! GGACATGTATTTTGAAATGG+AGG - chr3_4:77554142-77554161 Msa0524090:intron 35.0%
CTAGCAATGCGTTATATCAA+TGG - chr3_4:77554175-77554194 Msa0524090:intron 35.0%
! ACTTTTAGTGTAGGTCGTTA+GGG - chr3_4:77554325-77554344 Msa0524090:intron 35.0%
! AGGGTGTATGTATCTGTTTT+TGG - chr3_4:77554344-77554363 Msa0524090:intron 35.0%
!!! TCTGTTTTTGGAGATGAAAG+AGG - chr3_4:77554356-77554375 Msa0524090:intron 35.0%
!!! CTGTTTTTGGAGATGAAAGA+GGG - chr3_4:77554357-77554376 Msa0524090:intron 35.0%
! TTTACCGTTTCTTTTTACGG+TGG - chr3_4:77554527-77554546 Msa0524090:intron 35.0%
AGAACCACCGTAAAAAGAAA+CGG + chr3_4:77554534-77554553 None:intergenic 35.0%
TTTAGTAGTAGACTAGAAGG+CGG + chr3_4:77554631-77554650 None:intergenic 35.0%
CTTGAGTGAAAATTTGTGCT+GGG + chr3_4:77554692-77554711 None:intergenic 35.0%
ACTTGAGTGAAAATTTGTGC+TGG + chr3_4:77554693-77554712 None:intergenic 35.0%
TCTCTTTGAATACGAACTGA+GGG + chr3_4:77554742-77554761 None:intergenic 35.0%
TTCTCTTTGAATACGAACTG+AGG + chr3_4:77554743-77554762 None:intergenic 35.0%
TTAGTTCATCACTACGCATA+GGG - chr3_4:77554798-77554817 Msa0524090:intron 35.0%
TGGCAGTTCCAACATATATA+TGG + chr3_4:77554839-77554858 None:intergenic 35.0%
AGAACCATCTCATAATTGTG+GGG + chr3_4:77554898-77554917 None:intergenic 35.0%
ATTAACCCACATAGCAACAA+GGG + chr3_4:77554928-77554947 None:intergenic 35.0%
CAAGAAATTGTCCATACAAG+AGG + chr3_4:77555011-77555030 None:intergenic 35.0%
AAACCCACAATTTCATCATC+AGG + chr3_4:77555105-77555124 None:intergenic 35.0%
GTTGTGAGCTGTTATTGATA+TGG - chr3_4:77555400-77555419 Msa0524090:CDS 35.0%
AATGACCTGGAAGTTTGAAT+GGG + chr3_4:77555434-77555453 None:intergenic 35.0%
GAGTGAAACAAGCAAAAACA+TGG - chr3_4:77555483-77555502 Msa0524090:CDS 35.0%
! CTGAGTCTGAAATATAGTTG+CGG + chr3_4:77553558-77553577 None:intergenic 35.0%
CAACTATATTTCAGACTCAG+AGG - chr3_4:77553558-77553577 Msa0524090:CDS 35.0%
! AAGTTCTCTCCGAATTTGTT+TGG + chr3_4:77553666-77553685 None:intergenic 35.0%
!!! GGACATGTATTTTGAAACAG+AGG + chr3_4:77553915-77553934 None:intergenic 35.0%
CATATGTGAAGTAGTTGACT+TGG + chr3_4:77553936-77553955 None:intergenic 35.0%
TAACGGTCAAAATTGTGCAT+TGG + chr3_4:77553959-77553978 None:intergenic 35.0%
ATAGTGCACATTGCAAAAAG+TGG - chr3_4:77554121-77554140 Msa0524090:intron 35.0%
!!! GGACATGTATTTTGAAATGG+AGG - chr3_4:77554142-77554161 Msa0524090:intron 35.0%
CTAGCAATGCGTTATATCAA+TGG - chr3_4:77554175-77554194 Msa0524090:intron 35.0%
! ACTTTTAGTGTAGGTCGTTA+GGG - chr3_4:77554325-77554344 Msa0524090:intron 35.0%
! AGGGTGTATGTATCTGTTTT+TGG - chr3_4:77554344-77554363 Msa0524090:intron 35.0%
!!! TCTGTTTTTGGAGATGAAAG+AGG - chr3_4:77554356-77554375 Msa0524090:intron 35.0%
!!! CTGTTTTTGGAGATGAAAGA+GGG - chr3_4:77554357-77554376 Msa0524090:intron 35.0%
! TTTACCGTTTCTTTTTACGG+TGG - chr3_4:77554527-77554546 Msa0524090:intron 35.0%
AGAACCACCGTAAAAAGAAA+CGG + chr3_4:77554534-77554553 None:intergenic 35.0%
TTTAGTAGTAGACTAGAAGG+CGG + chr3_4:77554631-77554650 None:intergenic 35.0%
CTTGAGTGAAAATTTGTGCT+GGG + chr3_4:77554692-77554711 None:intergenic 35.0%
ACTTGAGTGAAAATTTGTGC+TGG + chr3_4:77554693-77554712 None:intergenic 35.0%
TCTCTTTGAATACGAACTGA+GGG + chr3_4:77554742-77554761 None:intergenic 35.0%
TTCTCTTTGAATACGAACTG+AGG + chr3_4:77554743-77554762 None:intergenic 35.0%
TTAGTTCATCACTACGCATA+GGG - chr3_4:77554798-77554817 Msa0524090:intron 35.0%
TGGCAGTTCCAACATATATA+TGG + chr3_4:77554839-77554858 None:intergenic 35.0%
AGAACCATCTCATAATTGTG+GGG + chr3_4:77554898-77554917 None:intergenic 35.0%
ATTAACCCACATAGCAACAA+GGG + chr3_4:77554928-77554947 None:intergenic 35.0%
CAAGAAATTGTCCATACAAG+AGG + chr3_4:77555011-77555030 None:intergenic 35.0%
AAACCCACAATTTCATCATC+AGG + chr3_4:77555105-77555124 None:intergenic 35.0%
GTTGTGAGCTGTTATTGATA+TGG - chr3_4:77555400-77555419 Msa0524090:CDS 35.0%
AATGACCTGGAAGTTTGAAT+GGG + chr3_4:77555434-77555453 None:intergenic 35.0%
GAGTGAAACAAGCAAAAACA+TGG - chr3_4:77555483-77555502 Msa0524090:CDS 35.0%
CGATTGTTACATCGCCAATA+AGG + chr3_4:77553530-77553549 None:intergenic 40.0%
! TTCTTGAAGCATTTCCTGTG+AGG + chr3_4:77553595-77553614 None:intergenic 40.0%
TAAAGTGTATGGCGAATCCA+AGG - chr3_4:77553624-77553643 Msa0524090:CDS 40.0%
GAATCCAAGGAGAGTCAAAA+TGG - chr3_4:77553637-77553656 Msa0524090:intron 40.0%
GGCAAATTGCAAGACGTTAT+CGG + chr3_4:77553705-77553724 None:intergenic 40.0%
TAAGGAAGCTTCAGGAAGAA+CGG + chr3_4:77553726-77553745 None:intergenic 40.0%
!! TGAAATCACCGCTGATTTAC+AGG - chr3_4:77553790-77553809 Msa0524090:intron 40.0%
ATGACTGTCATGTAAAGCTG+TGG - chr3_4:77554282-77554301 Msa0524090:intron 40.0%
! CACTTTTAGTGTAGGTCGTT+AGG - chr3_4:77554324-77554343 Msa0524090:intron 40.0%
!! TTTTGGAGATGAAAGAGGGA+AGG - chr3_4:77554361-77554380 Msa0524090:intron 40.0%
!!! TTTTGATTTCAACCCAGCCA+TGG + chr3_4:77554393-77554412 None:intergenic 40.0%
AAATATGTTCGCAGTGAGCT+GGG - chr3_4:77554416-77554435 Msa0524090:intron 40.0%
! ATCCTCCAAAAAGCGTATCT+CGG + chr3_4:77554468-77554487 None:intergenic 40.0%
!! GAGGATGAATCTTTTGAGAG+AGG - chr3_4:77554482-77554501 Msa0524090:intron 40.0%
!! AATCTTTTGAGAGAGGAAGC+AGG - chr3_4:77554489-77554508 Msa0524090:intron 40.0%
!! ATCTTTTGAGAGAGGAAGCA+GGG - chr3_4:77554490-77554509 Msa0524090:intron 40.0%
! GTGTTGTTCTGTTTCCACTT+TGG - chr3_4:77554575-77554594 Msa0524090:intron 40.0%
ACTAAGAGATGGTCTGGAAA+GGG + chr3_4:77554601-77554620 None:intergenic 40.0%
AACTAAGAGATGGTCTGGAA+AGG + chr3_4:77554602-77554621 None:intergenic 40.0%
CAAGAAACTAAGAGATGGTC+TGG + chr3_4:77554607-77554626 None:intergenic 40.0%
!! CACTCAAGTTGTTTCTGTGT+TGG - chr3_4:77554704-77554723 Msa0524090:CDS 40.0%
GTTAGTTCATCACTACGCAT+AGG - chr3_4:77554797-77554816 Msa0524090:intron 40.0%
ACGGAATAAACTGTGACACA+TGG + chr3_4:77554859-77554878 None:intergenic 40.0%
TTTATTCCGTGATTTCCTGC+CGG - chr3_4:77554869-77554888 Msa0524090:intron 40.0%
TCTCATAATTGTGGGGAAAC+CGG + chr3_4:77554891-77554910 None:intergenic 40.0%
GTTTCCCCACAATTATGAGA+TGG - chr3_4:77554891-77554910 Msa0524090:intron 40.0%
CATTAACCCACATAGCAACA+AGG + chr3_4:77554929-77554948 None:intergenic 40.0%
! GATTTTCACTGCCTCTTGTA+TGG - chr3_4:77554997-77555016 Msa0524090:intron 40.0%
CAATGACCTGGAAGTTTGAA+TGG + chr3_4:77555435-77555454 None:intergenic 40.0%
AAGCAAAAACATGGAGCAGT+TGG - chr3_4:77555492-77555511 Msa0524090:CDS 40.0%
CAGTTGGATTCATCAGTGAA+CGG - chr3_4:77555508-77555527 Msa0524090:CDS 40.0%
! AGATGAAGACGATGCTGATT+GGG - chr3_4:77555561-77555580 Msa0524090:CDS 40.0%
CGATTGTTACATCGCCAATA+AGG + chr3_4:77553530-77553549 None:intergenic 40.0%
! TTCTTGAAGCATTTCCTGTG+AGG + chr3_4:77553595-77553614 None:intergenic 40.0%
TAAAGTGTATGGCGAATCCA+AGG - chr3_4:77553624-77553643 Msa0524090:CDS 40.0%
GAATCCAAGGAGAGTCAAAA+TGG - chr3_4:77553637-77553656 Msa0524090:intron 40.0%
GGCAAATTGCAAGACGTTAT+CGG + chr3_4:77553705-77553724 None:intergenic 40.0%
TAAGGAAGCTTCAGGAAGAA+CGG + chr3_4:77553726-77553745 None:intergenic 40.0%
!! TGAAATCACCGCTGATTTAC+AGG - chr3_4:77553790-77553809 Msa0524090:intron 40.0%
ATGACTGTCATGTAAAGCTG+TGG - chr3_4:77554282-77554301 Msa0524090:intron 40.0%
! CACTTTTAGTGTAGGTCGTT+AGG - chr3_4:77554324-77554343 Msa0524090:intron 40.0%
!! TTTTGGAGATGAAAGAGGGA+AGG - chr3_4:77554361-77554380 Msa0524090:intron 40.0%
!!! TTTTGATTTCAACCCAGCCA+TGG + chr3_4:77554393-77554412 None:intergenic 40.0%
AAATATGTTCGCAGTGAGCT+GGG - chr3_4:77554416-77554435 Msa0524090:intron 40.0%
! ATCCTCCAAAAAGCGTATCT+CGG + chr3_4:77554468-77554487 None:intergenic 40.0%
!! GAGGATGAATCTTTTGAGAG+AGG - chr3_4:77554482-77554501 Msa0524090:intron 40.0%
!! AATCTTTTGAGAGAGGAAGC+AGG - chr3_4:77554489-77554508 Msa0524090:intron 40.0%
!! ATCTTTTGAGAGAGGAAGCA+GGG - chr3_4:77554490-77554509 Msa0524090:intron 40.0%
! GTGTTGTTCTGTTTCCACTT+TGG - chr3_4:77554575-77554594 Msa0524090:intron 40.0%
ACTAAGAGATGGTCTGGAAA+GGG + chr3_4:77554601-77554620 None:intergenic 40.0%
AACTAAGAGATGGTCTGGAA+AGG + chr3_4:77554602-77554621 None:intergenic 40.0%
CAAGAAACTAAGAGATGGTC+TGG + chr3_4:77554607-77554626 None:intergenic 40.0%
!! CACTCAAGTTGTTTCTGTGT+TGG - chr3_4:77554704-77554723 Msa0524090:CDS 40.0%
GTTAGTTCATCACTACGCAT+AGG - chr3_4:77554797-77554816 Msa0524090:intron 40.0%
ACGGAATAAACTGTGACACA+TGG + chr3_4:77554859-77554878 None:intergenic 40.0%
TTTATTCCGTGATTTCCTGC+CGG - chr3_4:77554869-77554888 Msa0524090:intron 40.0%
TCTCATAATTGTGGGGAAAC+CGG + chr3_4:77554891-77554910 None:intergenic 40.0%
GTTTCCCCACAATTATGAGA+TGG - chr3_4:77554891-77554910 Msa0524090:intron 40.0%
CATTAACCCACATAGCAACA+AGG + chr3_4:77554929-77554948 None:intergenic 40.0%
! GATTTTCACTGCCTCTTGTA+TGG - chr3_4:77554997-77555016 Msa0524090:intron 40.0%
CAATGACCTGGAAGTTTGAA+TGG + chr3_4:77555435-77555454 None:intergenic 40.0%
AAGCAAAAACATGGAGCAGT+TGG - chr3_4:77555492-77555511 Msa0524090:CDS 40.0%
CAGTTGGATTCATCAGTGAA+CGG - chr3_4:77555508-77555527 Msa0524090:CDS 40.0%
! AGATGAAGACGATGCTGATT+GGG - chr3_4:77555561-77555580 Msa0524090:CDS 40.0%
!!! GCAACCATTTTGACTCTCCT+TGG + chr3_4:77553644-77553663 None:intergenic 45.0%
GTTCTTCCTGAAGCTTCCTT+AGG - chr3_4:77553725-77553744 Msa0524090:intron 45.0%
GAGGTAAGAATCAGCACCTA+AGG + chr3_4:77553744-77553763 None:intergenic 45.0%
ATCAGCGGTGATTTCAACGT+CGG + chr3_4:77553786-77553805 None:intergenic 45.0%
GGCGGCGAAAATGATAGAAT+AGG + chr3_4:77553830-77553849 None:intergenic 45.0%
CTGTCATGTAAAGCTGTGGT+TGG - chr3_4:77554286-77554305 Msa0524090:intron 45.0%
AGATGAAAGAGGGAAGGAAG+TGG - chr3_4:77554367-77554386 Msa0524090:intron 45.0%
CAGCTCACTGCGAACATATT+TGG + chr3_4:77554417-77554436 None:intergenic 45.0%
CAAATATGTTCGCAGTGAGC+TGG - chr3_4:77554415-77554434 Msa0524090:intron 45.0%
AATATGTTCGCAGTGAGCTG+GGG - chr3_4:77554417-77554436 Msa0524090:intron 45.0%
! AACTCCCGAGATACGCTTTT+TGG - chr3_4:77554460-77554479 Msa0524090:intron 45.0%
! TCCTCCAAAAAGCGTATCTC+GGG + chr3_4:77554467-77554486 None:intergenic 45.0%
GCGGTCAAGAAACTAAGAGA+TGG + chr3_4:77554612-77554631 None:intergenic 45.0%
!! AACAATGCTTTTGAGGGGAG+AGG - chr3_4:77555040-77555059 Msa0524090:intron 45.0%
!! ACAATGCTTTTGAGGGGAGA+GGG - chr3_4:77555041-77555060 Msa0524090:intron 45.0%
TTGTGGGTTTCACATCACTG+TGG - chr3_4:77555115-77555134 Msa0524090:intron 45.0%
TTCCACCCATTCAAACTTCC+AGG - chr3_4:77555426-77555445 Msa0524090:CDS 45.0%
CAGATGAAGACGATGCTGAT+TGG - chr3_4:77555560-77555579 Msa0524090:CDS 45.0%
GAAGATGAAGACCCTGAAGA+AGG - chr3_4:77555583-77555602 Msa0524090:CDS 45.0%
!!! GCAACCATTTTGACTCTCCT+TGG + chr3_4:77553644-77553663 None:intergenic 45.0%
GTTCTTCCTGAAGCTTCCTT+AGG - chr3_4:77553725-77553744 Msa0524090:intron 45.0%
GAGGTAAGAATCAGCACCTA+AGG + chr3_4:77553744-77553763 None:intergenic 45.0%
ATCAGCGGTGATTTCAACGT+CGG + chr3_4:77553786-77553805 None:intergenic 45.0%
GGCGGCGAAAATGATAGAAT+AGG + chr3_4:77553830-77553849 None:intergenic 45.0%
CTGTCATGTAAAGCTGTGGT+TGG - chr3_4:77554286-77554305 Msa0524090:intron 45.0%
AGATGAAAGAGGGAAGGAAG+TGG - chr3_4:77554367-77554386 Msa0524090:intron 45.0%
CAGCTCACTGCGAACATATT+TGG + chr3_4:77554417-77554436 None:intergenic 45.0%
CAAATATGTTCGCAGTGAGC+TGG - chr3_4:77554415-77554434 Msa0524090:intron 45.0%
AATATGTTCGCAGTGAGCTG+GGG - chr3_4:77554417-77554436 Msa0524090:intron 45.0%
! AACTCCCGAGATACGCTTTT+TGG - chr3_4:77554460-77554479 Msa0524090:intron 45.0%
! TCCTCCAAAAAGCGTATCTC+GGG + chr3_4:77554467-77554486 None:intergenic 45.0%
GCGGTCAAGAAACTAAGAGA+TGG + chr3_4:77554612-77554631 None:intergenic 45.0%
!! AACAATGCTTTTGAGGGGAG+AGG - chr3_4:77555040-77555059 Msa0524090:intron 45.0%
!! ACAATGCTTTTGAGGGGAGA+GGG - chr3_4:77555041-77555060 Msa0524090:intron 45.0%
TTGTGGGTTTCACATCACTG+TGG - chr3_4:77555115-77555134 Msa0524090:intron 45.0%
TTCCACCCATTCAAACTTCC+AGG - chr3_4:77555426-77555445 Msa0524090:CDS 45.0%
CAGATGAAGACGATGCTGAT+TGG - chr3_4:77555560-77555579 Msa0524090:CDS 45.0%
GAAGATGAAGACCCTGAAGA+AGG - chr3_4:77555583-77555602 Msa0524090:CDS 45.0%
!! TAGATAATTAAAAATATTAA+CGG + chr3_4:77553976-77553995 None:intergenic 5.0%
!! TAGATAATTAAAAATATTAA+CGG + chr3_4:77553976-77553995 None:intergenic 5.0%
TAAGGTGTGAGTGTGACCGA+TGG + chr3_4:77553512-77553531 None:intergenic 50.0%
CGGTCACACTCACACCTTAT+TGG - chr3_4:77553513-77553532 Msa0524090:CDS 50.0%
TCAGCACCTAAGGAAGCTTC+AGG + chr3_4:77553734-77553753 None:intergenic 50.0%
! GATTTCAACGTCGGTGATGG+TGG + chr3_4:77553777-77553796 None:intergenic 50.0%
GGTGATTTCAACGTCGGTGA+TGG + chr3_4:77553780-77553799 None:intergenic 50.0%
!! TCCCGAGATACGCTTTTTGG+AGG - chr3_4:77554463-77554482 Msa0524090:intron 50.0%
ATAATTGTGGGGAAACCGGC+AGG + chr3_4:77554887-77554906 None:intergenic 50.0%
ACTAGGCCCTTGTTGCTATG+TGG - chr3_4:77554919-77554938 Msa0524090:intron 50.0%
CTAGGCCCTTGTTGCTATGT+GGG - chr3_4:77554920-77554939 Msa0524090:intron 50.0%
!! GCATAAGTGAGCACTGGCTA+TGG + chr3_4:77555321-77555340 None:intergenic 50.0%
GACCTGGAAGTTTGAATGGG+TGG + chr3_4:77555431-77555450 None:intergenic 50.0%
TAAGGTGTGAGTGTGACCGA+TGG + chr3_4:77553512-77553531 None:intergenic 50.0%
CGGTCACACTCACACCTTAT+TGG - chr3_4:77553513-77553532 Msa0524090:CDS 50.0%
TCAGCACCTAAGGAAGCTTC+AGG + chr3_4:77553734-77553753 None:intergenic 50.0%
! GATTTCAACGTCGGTGATGG+TGG + chr3_4:77553777-77553796 None:intergenic 50.0%
GGTGATTTCAACGTCGGTGA+TGG + chr3_4:77553780-77553799 None:intergenic 50.0%
!! TCCCGAGATACGCTTTTTGG+AGG - chr3_4:77554463-77554482 Msa0524090:intron 50.0%
ATAATTGTGGGGAAACCGGC+AGG + chr3_4:77554887-77554906 None:intergenic 50.0%
ACTAGGCCCTTGTTGCTATG+TGG - chr3_4:77554919-77554938 Msa0524090:intron 50.0%
CTAGGCCCTTGTTGCTATGT+GGG - chr3_4:77554920-77554939 Msa0524090:intron 50.0%
!! GCATAAGTGAGCACTGGCTA+TGG + chr3_4:77555321-77555340 None:intergenic 50.0%
GACCTGGAAGTTTGAATGGG+TGG + chr3_4:77555431-77555450 None:intergenic 50.0%
GACGCAATTGCTTCACACCG+CGG - chr3_4:77553475-77553494 Msa0524090:CDS 55.0%
! TTCAGACTCAGAGGCGTGAG+TGG - chr3_4:77553567-77553586 Msa0524090:CDS 55.0%
! TCAGACTCAGAGGCGTGAGT+GGG - chr3_4:77553568-77553587 Msa0524090:CDS 55.0%
!! TGATGGTGGTGACGGAAGAG+AGG + chr3_4:77553763-77553782 None:intergenic 55.0%
!! AACGTCGGTGATGGTGGTGA+CGG + chr3_4:77553771-77553790 None:intergenic 55.0%
AAGAGGGAAGGAAGTGGCCA+TGG - chr3_4:77554373-77554392 Msa0524090:intron 55.0%
! TGGGGAGGCGTATGAAGTTG+CGG - chr3_4:77554435-77554454 Msa0524090:intron 55.0%
TGGTCTGGAAAGGGCCAAAG+TGG + chr3_4:77554592-77554611 None:intergenic 55.0%
GGGAAACCGGCAGGAAATCA+CGG + chr3_4:77554878-77554897 None:intergenic 55.0%
!! ATGCTTTTGAGGGGAGAGGG+TGG - chr3_4:77555044-77555063 Msa0524090:intron 55.0%
!! TGCTTTTGAGGGGAGAGGGT+GGG - chr3_4:77555045-77555064 Msa0524090:intron 55.0%
TGGCGTGCATAAGTGAGCAC+TGG + chr3_4:77555327-77555346 None:intergenic 55.0%
GACGCAATTGCTTCACACCG+CGG - chr3_4:77553475-77553494 Msa0524090:CDS 55.0%
! TTCAGACTCAGAGGCGTGAG+TGG - chr3_4:77553567-77553586 Msa0524090:CDS 55.0%
! TCAGACTCAGAGGCGTGAGT+GGG - chr3_4:77553568-77553587 Msa0524090:CDS 55.0%
!! TGATGGTGGTGACGGAAGAG+AGG + chr3_4:77553763-77553782 None:intergenic 55.0%
!! AACGTCGGTGATGGTGGTGA+CGG + chr3_4:77553771-77553790 None:intergenic 55.0%
AAGAGGGAAGGAAGTGGCCA+TGG - chr3_4:77554373-77554392 Msa0524090:intron 55.0%
! TGGGGAGGCGTATGAAGTTG+CGG - chr3_4:77554435-77554454 Msa0524090:intron 55.0%
TGGTCTGGAAAGGGCCAAAG+TGG + chr3_4:77554592-77554611 None:intergenic 55.0%
GGGAAACCGGCAGGAAATCA+CGG + chr3_4:77554878-77554897 None:intergenic 55.0%
!! ATGCTTTTGAGGGGAGAGGG+TGG - chr3_4:77555044-77555063 Msa0524090:intron 55.0%
!! TGCTTTTGAGGGGAGAGGGT+GGG - chr3_4:77555045-77555064 Msa0524090:intron 55.0%
TGGCGTGCATAAGTGAGCAC+TGG + chr3_4:77555327-77555346 None:intergenic 55.0%
CGATGGTATCAGTGCAGCCG+CGG + chr3_4:77553495-77553514 None:intergenic 60.0%
! CGCGGCTGCACTGATACCAT+CGG - chr3_4:77553493-77553512 Msa0524090:CDS 60.0%
GGAAGGAAGTGGCCATGGCT+GGG - chr3_4:77554378-77554397 Msa0524090:intron 60.0%
ATGTTCGCAGTGAGCTGGGG+AGG - chr3_4:77554420-77554439 Msa0524090:intron 60.0%
! AGGGGAGAGGGTGGGTTCTT+TGG - chr3_4:77555053-77555072 Msa0524090:intron 60.0%
CGATGGTATCAGTGCAGCCG+CGG + chr3_4:77553495-77553514 None:intergenic 60.0%
! CGCGGCTGCACTGATACCAT+CGG - chr3_4:77553493-77553512 Msa0524090:CDS 60.0%
GGAAGGAAGTGGCCATGGCT+GGG - chr3_4:77554378-77554397 Msa0524090:intron 60.0%
ATGTTCGCAGTGAGCTGGGG+AGG - chr3_4:77554420-77554439 Msa0524090:intron 60.0%
! AGGGGAGAGGGTGGGTTCTT+TGG - chr3_4:77555053-77555072 Msa0524090:intron 60.0%
AGGCGTGAGTGGGTCCTCAC+AGG - chr3_4:77553578-77553597 Msa0524090:CDS 65.0%
GGGAAGGAAGTGGCCATGGC+TGG - chr3_4:77554377-77554396 Msa0524090:intron 65.0%
AGGCGTGAGTGGGTCCTCAC+AGG - chr3_4:77553578-77553597 Msa0524090:CDS 65.0%
GGGAAGGAAGTGGCCATGGC+TGG - chr3_4:77554377-77554396 Msa0524090:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77553467 77555624 77553467 ID=Msa0524090;Name=Msa0524090
chr3_4 mRNA 77553467 77555624 77553467 ID=Msa0524090-mRNA-1;Parent=Msa0524090;Name=Msa0524090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|231
chr3_4 exon 77555280 77555624 77555280 ID=Msa0524090-mRNA-1:exon:22761;Parent=Msa0524090-mRNA-1
chr3_4 exon 77554580 77554753 77554580 ID=Msa0524090-mRNA-1:exon:22760;Parent=Msa0524090-mRNA-1
chr3_4 exon 77553467 77553643 77553467 ID=Msa0524090-mRNA-1:exon:22759;Parent=Msa0524090-mRNA-1
chr3_4 CDS 77555280 77555624 77555280 ID=Msa0524090-mRNA-1:cds;Parent=Msa0524090-mRNA-1
chr3_4 CDS 77554580 77554753 77554580 ID=Msa0524090-mRNA-1:cds;Parent=Msa0524090-mRNA-1
chr3_4 CDS 77553467 77553643 77553467 ID=Msa0524090-mRNA-1:cds;Parent=Msa0524090-mRNA-1
Gene Sequence

>Msa0524090

ATGAGCACGACGCAATTGCTTCACACCGCGGCTGCACTGATACCATCGGTCACACTCACACCTTATTGGCGATGTAACAATCGCACAACCGCAACTATATTTCAGACTCAGAGGCGTGAGTGGGTCCTCACAGGAAATGCTTCAAGAATAATGAGGATAAAGTGTATGGCGAATCCAAGGAGAGTCAAAATGGTTGCCAAACAAATTCGGAGAGAACTTTCTGATATGCTCATCACCGATAACGTCTTGCAATTTGCCGTTCTTCCTGAAGCTTCCTTAGGTGCTGATTCTTACCTCTCTTCCGTCACCACCATCACCGACGTTGAAATCACCGCTGATTTACAGGTCGTTAGGGTGTATGTATCTGTTTTTGGAGATGAAAGAGGGAAGGAAGTGGCCATGGCTGGGTTGAAATCAAAAGCCAAATATGTTCGCAGTGAGCTGGGGAGGCGTATGAAGTTGCGGTTAACTCCCGAGATACGCTTTTTGGAGGATGAATCTTTTGAGAGAGGAAGCAGGGTCATTGCAATATTAGATAAAATTAAGAATGAGAAGAGTGAAACAAGCAAAAACATGGAGCAGTTGGATTCATCAGTGAACGGAGATGACACTGAGCAGTTGAATTCATCATCAGATGAAGACGATGCTGATTGGGAAGATGAAGACCCTGAAGAAGGTATCATTTATGTGGAATAG

Protein sequence

>Msa0524090

MSTTQLLHTAAALIPSVTLTPYWRCNNRTTATIFQTQRREWVLTGNASRIMRIKCMANPRRVKMVAKQIRRELSDMLITDNVLQFAVLPEASLGADSYLSSVTTITDVEITADLQVVRVYVSVFGDERGKEVAMAGLKSKAKYVRSELGRRMKLRLTPEIRFLEDESFERGSRVIAILDKIKNEKSETSKNMEQLDSSVNGDDTEQLNSSSDEDDADWEDEDPEEGIIYVE*