AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0103780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103780 MtrunA17_Chr1g0157681 97.692 130 3 0 1 130 1 130 4.61e-88 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103780 AT1G30380.1 82.443 131 21 2 1 130 1 130 2.25e-73 215

Find 63 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTGTTGGTGTTGTTCT+TGG 0.264103 1_3:-11167415 Msa0103780:CDS
TCGAACTATTGAGTCACTTA+TGG 0.269676 1_3:+11167165 None:intergenic
ATCTTCCAGCAAACAACATT+AGG 0.298751 1_3:+11167575 None:intergenic
TTTCCCTTGCGCCTTGTCAT+AGG 0.324595 1_3:+11168601 None:intergenic
GCGCAAGGGAAAGGGTGCTT+TGG 0.345906 1_3:-11168590 Msa0103780:CDS
ATGCAGTTGCTGAAAGGTAT+TGG 0.349663 1_3:+11167134 None:intergenic
GTTCACCCTTGCTGATACTT+TGG 0.359682 1_3:-11167461 Msa0103780:CDS
GCTCTCATAGTTTGAACAAA+TGG 0.363665 1_3:-11168947 Msa0103780:exon
ATGATTGAATCGCATTGAAT+TGG 0.370102 1_3:+11167194 None:intergenic
TTGCAGACTGGTGACCCAGC+TGG 0.370604 1_3:-11167484 Msa0103780:CDS
CGCAAGGGAAAGGGTGCTTT+GGG 0.371284 1_3:-11168589 Msa0103780:CDS
TTAGAGTTAAGAAAGAATAA+AGG 0.374063 1_3:+11167285 None:intergenic
ACCTTCTCCTATCCAGGGTT+TGG 0.377236 1_3:-11168869 Msa0103780:intron
ATGTTGTTTGCTGGAAGATT+TGG 0.379579 1_3:-11167571 Msa0103780:CDS
TGCAGTTGCTGAAAGGTATT+GGG 0.379819 1_3:+11167135 None:intergenic
GGAGTTCGTTGTGACTTCAT+TGG 0.392047 1_3:-11168568 Msa0103780:CDS
TCTTCCAGCAAACAACATTA+GGG 0.393888 1_3:+11167576 None:intergenic
ACAACCCTAATGTTGTTTGC+TGG 0.398888 1_3:-11167580 Msa0103780:CDS
CCTTGCGCCTTGTCATAGGT+TGG 0.425942 1_3:+11168605 None:intergenic
TGCAGACTGGTGACCCAGCT+GGG 0.430536 1_3:-11167483 Msa0103780:CDS
ACTCAAACCTTCTCCTATCC+AGG 0.437202 1_3:-11168875 Msa0103780:CDS
TCAGCAAGGGTGAACCCAGC+TGG 0.438597 1_3:+11167469 None:intergenic
CTTGCGCCTTGTCATAGGTT+GGG 0.439768 1_3:+11168606 None:intergenic
GATTGGCTCCCTCAGCAAAC+AGG 0.449260 1_3:-11167549 Msa0103780:CDS
TGTACATAAACATTGTTGCC+TGG 0.457536 1_3:-11167072 None:intergenic
ACAACTTTGCCTCAATTCAC+TGG 0.462189 1_3:-11168910 Msa0103780:CDS
AGCAACAGCAGGACTAAAGC+TGG 0.487183 1_3:-11167524 Msa0103780:CDS
GTTGCTTTCCTGTTTGCTGA+GGG 0.491197 1_3:+11167541 None:intergenic
GTTTGCTGGAAGATTTGGAT+TGG 0.494741 1_3:-11167566 Msa0103780:CDS
AAGAAGTAAGCAGAATCTAA+TGG 0.501082 1_3:+11169059 None:intergenic
TATGACAAGGCGCAAGGGAA+AGG 0.505007 1_3:-11168599 Msa0103780:CDS
GTACATAAACATTGTTGCCT+GGG 0.507880 1_3:-11167071 None:intergenic
ATGACAAGGCGCAAGGGAAA+GGG 0.519777 1_3:-11168598 Msa0103780:CDS
ATAGTGCCTAATGTGTCATA+TGG 0.521263 1_3:-11167113 Msa0103780:three_prime_UTR
CTTGCTGATACTTTGGCCTG+TGG 0.531365 1_3:-11167454 Msa0103780:CDS
ACAGAACCATATGACACATT+AGG 0.535969 1_3:+11167107 Msa0103770:three_prime_UTR
GTTCTTGGTCTTAAGAACAT+TGG 0.536798 1_3:-11167400 Msa0103780:CDS
AGGGACTCAGGCTTGCAGAC+TGG 0.536809 1_3:-11167496 Msa0103780:CDS
CAGGACTAAAGCTGGAGACA+AGG 0.539368 1_3:-11167516 Msa0103780:CDS
TGTTGCTTTCCTGTTTGCTG+AGG 0.553786 1_3:+11167540 None:intergenic
ACCAAACCCTGGATAGGAGA+AGG 0.553964 1_3:+11168868 None:intergenic
AAGCTGGAGACAAGGGACTC+AGG 0.559360 1_3:-11167508 Msa0103780:CDS
GATGTGTCCAACTGTTCCAC+AGG 0.560279 1_3:+11167438 None:intergenic
ACTTTGGCCTGTGGAACAGT+TGG 0.563445 1_3:-11167445 Msa0103780:CDS
GGAACAGTTGGACACATCAT+TGG 0.567255 1_3:-11167433 Msa0103780:CDS
CAGCAAGGGTGAACCCAGCT+GGG 0.567280 1_3:+11167470 None:intergenic
GGCACTATGCAGTTGCTGAA+AGG 0.570549 1_3:+11167128 None:intergenic
CATTGGTTCATCAACTAATG+TGG 0.575024 1_3:-11168551 Msa0103780:intron
ATAGGAGAAGGTTTGAGTTG+TGG 0.576762 1_3:+11168880 None:intergenic
TTAATTACCAAACCCTGGAT+AGG 0.584959 1_3:+11168862 None:intergenic
AGGACTAAAGCTGGAGACAA+GGG 0.595838 1_3:-11167515 Msa0103780:CDS
CTCAAACCTTCTCCTATCCA+GGG 0.595941 1_3:-11168874 Msa0103780:CDS
CCAACCTATGACAAGGCGCA+AGG 0.600144 1_3:-11168605 Msa0103780:CDS
CACAGGCCAAAGTATCAGCA+AGG 0.601389 1_3:+11167455 None:intergenic
AGTGGTTAATTACCAAACCC+TGG 0.602633 1_3:+11168857 None:intergenic
GGTCTAAGACCAGTGAATTG+AGG 0.606924 1_3:+11168901 None:intergenic
GCAAACAGGAAAGCAACAGC+AGG 0.611764 1_3:-11167535 Msa0103780:CDS
CAACCTATGACAAGGCGCAA+GGG 0.619501 1_3:-11168604 Msa0103780:CDS
GTTGGACACATCATTGGTGT+TGG 0.642937 1_3:-11167427 Msa0103780:CDS
GATGACTCGATTGCATCACT+AGG 0.672643 1_3:+11167216 None:intergenic
ACAGGCCAAAGTATCAGCAA+GGG 0.672894 1_3:+11167456 None:intergenic
TTGCTGCCCAACCTATGACA+AGG 0.674324 1_3:-11168612 Msa0103780:CDS
ACATGTTGGACAGATTATGG+TGG 0.710941 1_3:-11167608 Msa0103780:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGTTTTATAATTCATA+AGG + chr1_3:11167420-11167439 None:intergenic 10.0%
!! TTTAAATATATATAGTATGA+AGG + chr1_3:11167456-11167475 None:intergenic 10.0%
!!! TTTATTTTTTTTTTATGTGA+AGG - chr1_3:11167508-11167527 Msa0103780:CDS 10.0%
!!! TTTAAGTTTTATAATTCATA+AGG + chr1_3:11167420-11167439 None:intergenic 10.0%
!! TTTAAATATATATAGTATGA+AGG + chr1_3:11167456-11167475 None:intergenic 10.0%
!!! TTTATTTTTTTTTTATGTGA+AGG - chr1_3:11167508-11167527 Msa0103780:CDS 10.0%
!!! ATTCATTTTTGTAAATTGTA+TGG + chr1_3:11167388-11167407 None:intergenic 15.0%
!!! TTTGAAATTTTGATTCATTA+AGG - chr1_3:11168350-11168369 Msa0103780:intron 15.0%
!!! ATTCATTTTTGTAAATTGTA+TGG + chr1_3:11167388-11167407 None:intergenic 15.0%
!!! TTTGAAATTTTGATTCATTA+AGG - chr1_3:11168350-11168369 Msa0103780:intron 15.0%
!! TATTCTATATACTTACTTCT+TGG - chr1_3:11167361-11167380 Msa0103780:three_prime_UTR 20.0%
!! ATGAATAAAAACATTGGAAT+TGG + chr1_3:11167638-11167657 None:intergenic 20.0%
!! ATGAATAAAAACATTGGAAT+TGG + chr1_3:11167638-11167657 None:intergenic 20.0%
!!! TTGAGTAACTATTTTAACAT+CGG + chr1_3:11168188-11168207 None:intergenic 20.0%
!!! AATAGAGGTAATAATCATTT+TGG + chr1_3:11168409-11168428 None:intergenic 20.0%
!! TTAACTTCAATTAGTGAAAA+TGG - chr1_3:11168453-11168472 Msa0103780:intron 20.0%
!! TTAGAGTTAAGAAAGAATAA+AGG + chr1_3:11168861-11168880 None:intergenic 20.0%
!! TATTCTATATACTTACTTCT+TGG - chr1_3:11167361-11167380 Msa0103780:three_prime_UTR 20.0%
!! ATGAATAAAAACATTGGAAT+TGG + chr1_3:11167638-11167657 None:intergenic 20.0%
!! ATGAATAAAAACATTGGAAT+TGG + chr1_3:11167638-11167657 None:intergenic 20.0%
!!! TTGAGTAACTATTTTAACAT+CGG + chr1_3:11168188-11168207 None:intergenic 20.0%
!!! AATAGAGGTAATAATCATTT+TGG + chr1_3:11168409-11168428 None:intergenic 20.0%
!! TTAACTTCAATTAGTGAAAA+TGG - chr1_3:11168453-11168472 Msa0103780:intron 20.0%
!! TTAGAGTTAAGAAAGAATAA+AGG + chr1_3:11168861-11168880 None:intergenic 20.0%
! CTAATTCTTTGTCAAAATCA+TGG + chr1_3:11167702-11167721 None:intergenic 25.0%
!! TGTAACTTTTGTCAAAATCA+TGG + chr1_3:11167791-11167810 None:intergenic 25.0%
!!! AGTTTTTTTTAGTAGTGGTT+GGG - chr1_3:11167964-11167983 Msa0103780:intron 25.0%
! AACAATGCATAAAATATGCA+AGG + chr1_3:11168004-11168023 None:intergenic 25.0%
! ATAGTGTCACAATAAAATAG+AGG + chr1_3:11168424-11168443 None:intergenic 25.0%
! CTAATTCTTTGTCAAAATCA+TGG + chr1_3:11167702-11167721 None:intergenic 25.0%
!! TGTAACTTTTGTCAAAATCA+TGG + chr1_3:11167791-11167810 None:intergenic 25.0%
!!! AGTTTTTTTTAGTAGTGGTT+GGG - chr1_3:11167964-11167983 Msa0103780:intron 25.0%
! AACAATGCATAAAATATGCA+AGG + chr1_3:11168004-11168023 None:intergenic 25.0%
! ATAGTGTCACAATAAAATAG+AGG + chr1_3:11168424-11168443 None:intergenic 25.0%
AAGAAGTAAGCAGAATCTAA+TGG + chr1_3:11167087-11167106 Msa0103770:three_prime_UTR 30.0%
AAATGATGACATGAAAAGAG+TGG + chr1_3:11167307-11167326 None:intergenic 30.0%
CGCACTATGAATAAAAACAT+TGG + chr1_3:11167644-11167663 None:intergenic 30.0%
! TTTTATTCATAGTGCGTGTT+TGG - chr1_3:11167648-11167667 Msa0103780:intron 30.0%
CGCACTATGAATAAAAACAT+TGG + chr1_3:11167644-11167663 None:intergenic 30.0%
! TTTTATTCATAGTGCGTGTT+TGG - chr1_3:11167648-11167667 Msa0103780:intron 30.0%
GTTTCATAACACATCATGTT+TGG + chr1_3:11167919-11167938 None:intergenic 30.0%
!!! TGTGCAGTTTTTTTTAGTAG+TGG - chr1_3:11167959-11167978 Msa0103780:intron 30.0%
!!! CAGTTTTTTTTAGTAGTGGT+TGG - chr1_3:11167963-11167982 Msa0103780:intron 30.0%
! TGTGGAAGTAATAGTCATTT+TGG - chr1_3:11168067-11168086 Msa0103780:intron 30.0%
! TATGATTGACTTTGACATGT+TGG - chr1_3:11168521-11168540 Msa0103780:intron 30.0%
CATTGGTGCATTGTAAAAAA+AGG - chr1_3:11168760-11168779 Msa0103780:intron 30.0%
ATGATTGAATCGCATTGAAT+TGG + chr1_3:11168952-11168971 None:intergenic 30.0%
AATCTAATGGTGACCATATA+AGG + chr1_3:11167074-11167093 Msa0103770:three_prime_UTR 30.0%
AAGAAGTAAGCAGAATCTAA+TGG + chr1_3:11167087-11167106 Msa0103770:three_prime_UTR 30.0%
AAATGATGACATGAAAAGAG+TGG + chr1_3:11167307-11167326 None:intergenic 30.0%
CGCACTATGAATAAAAACAT+TGG + chr1_3:11167644-11167663 None:intergenic 30.0%
! TTTTATTCATAGTGCGTGTT+TGG - chr1_3:11167648-11167667 Msa0103780:intron 30.0%
CGCACTATGAATAAAAACAT+TGG + chr1_3:11167644-11167663 None:intergenic 30.0%
! TTTTATTCATAGTGCGTGTT+TGG - chr1_3:11167648-11167667 Msa0103780:intron 30.0%
GTTTCATAACACATCATGTT+TGG + chr1_3:11167919-11167938 None:intergenic 30.0%
!!! TGTGCAGTTTTTTTTAGTAG+TGG - chr1_3:11167959-11167978 Msa0103780:intron 30.0%
!!! CAGTTTTTTTTAGTAGTGGT+TGG - chr1_3:11167963-11167982 Msa0103780:intron 30.0%
! TGTGGAAGTAATAGTCATTT+TGG - chr1_3:11168067-11168086 Msa0103780:intron 30.0%
! TATGATTGACTTTGACATGT+TGG - chr1_3:11168521-11168540 Msa0103780:intron 30.0%
CATTGGTGCATTGTAAAAAA+AGG - chr1_3:11168760-11168779 Msa0103780:intron 30.0%
ATGATTGAATCGCATTGAAT+TGG + chr1_3:11168952-11168971 None:intergenic 30.0%
!!! CACACAGATTTTGAAGCTTA+TGG + chr1_3:11167126-11167145 None:intergenic 35.0%
GCTCTCATAGTTTGAACAAA+TGG - chr1_3:11167196-11167215 Msa0103780:three_prime_UTR 35.0%
TTAATTACCAAACCCTGGAT+AGG + chr1_3:11167284-11167303 None:intergenic 35.0%
!! CATTGGTTCATCAACTAATG+TGG - chr1_3:11167592-11167611 Msa0103780:CDS 35.0%
AAAACTGCACACATCATGTT+TGG + chr1_3:11167950-11167969 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr1_3:11167999-11168018 None:intergenic 35.0%
GGACATGTGTACAATTATTG+TGG - chr1_3:11168049-11168068 Msa0103780:intron 35.0%
TTGACATGTTGGACAGATTA+TGG - chr1_3:11168532-11168551 Msa0103780:intron 35.0%
TCTTCCAGCAAACAACATTA+GGG + chr1_3:11168570-11168589 None:intergenic 35.0%
ATCTTCCAGCAAACAACATT+AGG + chr1_3:11168571-11168590 None:intergenic 35.0%
! ATGTTGTTTGCTGGAAGATT+TGG - chr1_3:11168572-11168591 Msa0103780:CDS 35.0%
!! GTTCTTGGTCTTAAGAACAT+TGG - chr1_3:11168743-11168762 Msa0103780:intron 35.0%
TCGAACTATTGAGTCACTTA+TGG + chr1_3:11168981-11169000 None:intergenic 35.0%
ATAGTGCCTAATGTGTCATA+TGG - chr1_3:11169030-11169049 Msa0103780:five_prime_UTR 35.0%
ACAGAACCATATGACACATT+AGG + chr1_3:11169039-11169058 None:intergenic 35.0%
!!! CACACAGATTTTGAAGCTTA+TGG + chr1_3:11167126-11167145 None:intergenic 35.0%
GCTCTCATAGTTTGAACAAA+TGG - chr1_3:11167196-11167215 Msa0103780:three_prime_UTR 35.0%
TTAATTACCAAACCCTGGAT+AGG + chr1_3:11167284-11167303 None:intergenic 35.0%
!! CATTGGTTCATCAACTAATG+TGG - chr1_3:11167592-11167611 Msa0103780:CDS 35.0%
AAAACTGCACACATCATGTT+TGG + chr1_3:11167950-11167969 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr1_3:11167999-11168018 None:intergenic 35.0%
GGACATGTGTACAATTATTG+TGG - chr1_3:11168049-11168068 Msa0103780:intron 35.0%
TTGACATGTTGGACAGATTA+TGG - chr1_3:11168532-11168551 Msa0103780:intron 35.0%
TCTTCCAGCAAACAACATTA+GGG + chr1_3:11168570-11168589 None:intergenic 35.0%
ATCTTCCAGCAAACAACATT+AGG + chr1_3:11168571-11168590 None:intergenic 35.0%
! ATGTTGTTTGCTGGAAGATT+TGG - chr1_3:11168572-11168591 Msa0103780:CDS 35.0%
!! GTTCTTGGTCTTAAGAACAT+TGG - chr1_3:11168743-11168762 Msa0103780:intron 35.0%
TCGAACTATTGAGTCACTTA+TGG + chr1_3:11168981-11169000 None:intergenic 35.0%
ATAGTGCCTAATGTGTCATA+TGG - chr1_3:11169030-11169049 Msa0103780:five_prime_UTR 35.0%
ACAGAACCATATGACACATT+AGG + chr1_3:11169039-11169058 None:intergenic 35.0%
ACAACTTTGCCTCAATTCAC+TGG - chr1_3:11167233-11167252 Msa0103780:three_prime_UTR 40.0%
!! ATAGGAGAAGGTTTGAGTTG+TGG + chr1_3:11167266-11167285 None:intergenic 40.0%
AGTGGTTAATTACCAAACCC+TGG + chr1_3:11167289-11167308 None:intergenic 40.0%
ATAGTGCGTGTTTGGATTGA+CGG - chr1_3:11167656-11167675 Msa0103780:intron 40.0%
ATAGTGCGTGTTTGGATTGA+CGG - chr1_3:11167656-11167675 Msa0103780:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr1_3:11167997-11168016 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr1_3:11167998-11168017 None:intergenic 40.0%
ACATGTTGGACAGATTATGG+TGG - chr1_3:11168535-11168554 Msa0103780:intron 40.0%
! ACAACCCTAATGTTGTTTGC+TGG - chr1_3:11168563-11168582 Msa0103780:CDS 40.0%
! GTTTGCTGGAAGATTTGGAT+TGG - chr1_3:11168577-11168596 Msa0103780:CDS 40.0%
!! ATTGGTGTTGGTGTTGTTCT+TGG - chr1_3:11168728-11168747 Msa0103780:intron 40.0%
!! TGCAGTTGCTGAAAGGTATT+GGG + chr1_3:11169011-11169030 None:intergenic 40.0%
! ATGCAGTTGCTGAAAGGTAT+TGG + chr1_3:11169012-11169031 None:intergenic 40.0%
ACAACTTTGCCTCAATTCAC+TGG - chr1_3:11167233-11167252 Msa0103780:three_prime_UTR 40.0%
!! ATAGGAGAAGGTTTGAGTTG+TGG + chr1_3:11167266-11167285 None:intergenic 40.0%
AGTGGTTAATTACCAAACCC+TGG + chr1_3:11167289-11167308 None:intergenic 40.0%
ATAGTGCGTGTTTGGATTGA+CGG - chr1_3:11167656-11167675 Msa0103780:intron 40.0%
ATAGTGCGTGTTTGGATTGA+CGG - chr1_3:11167656-11167675 Msa0103780:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr1_3:11167997-11168016 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr1_3:11167998-11168017 None:intergenic 40.0%
ACATGTTGGACAGATTATGG+TGG - chr1_3:11168535-11168554 Msa0103780:intron 40.0%
! ACAACCCTAATGTTGTTTGC+TGG - chr1_3:11168563-11168582 Msa0103780:CDS 40.0%
! GTTTGCTGGAAGATTTGGAT+TGG - chr1_3:11168577-11168596 Msa0103780:CDS 40.0%
!! ATTGGTGTTGGTGTTGTTCT+TGG - chr1_3:11168728-11168747 Msa0103780:intron 40.0%
!! TGCAGTTGCTGAAAGGTATT+GGG + chr1_3:11169011-11169030 None:intergenic 40.0%
! ATGCAGTTGCTGAAAGGTAT+TGG + chr1_3:11169012-11169031 None:intergenic 40.0%
! GGTCTAAGACCAGTGAATTG+AGG + chr1_3:11167245-11167264 None:intergenic 45.0%
ACTCAAACCTTCTCCTATCC+AGG - chr1_3:11167268-11167287 Msa0103780:three_prime_UTR 45.0%
CTCAAACCTTCTCCTATCCA+GGG - chr1_3:11167269-11167288 Msa0103780:three_prime_UTR 45.0%
GGAGTTCGTTGTGACTTCAT+TGG - chr1_3:11167575-11167594 Msa0103780:CDS 45.0%
! GTTGCTTTCCTGTTTGCTGA+GGG + chr1_3:11168605-11168624 None:intergenic 45.0%
!! TGTTGCTTTCCTGTTTGCTG+AGG + chr1_3:11168606-11168625 None:intergenic 45.0%
AGGACTAAAGCTGGAGACAA+GGG - chr1_3:11168628-11168647 Msa0103780:intron 45.0%
GTTCACCCTTGCTGATACTT+TGG - chr1_3:11168682-11168701 Msa0103780:intron 45.0%
! ACAGGCCAAAGTATCAGCAA+GGG + chr1_3:11168690-11168709 None:intergenic 45.0%
GGAACAGTTGGACACATCAT+TGG - chr1_3:11168710-11168729 Msa0103780:intron 45.0%
GTTGGACACATCATTGGTGT+TGG - chr1_3:11168716-11168735 Msa0103780:intron 45.0%
GATGACTCGATTGCATCACT+AGG + chr1_3:11168930-11168949 None:intergenic 45.0%
! GGTCTAAGACCAGTGAATTG+AGG + chr1_3:11167245-11167264 None:intergenic 45.0%
ACTCAAACCTTCTCCTATCC+AGG - chr1_3:11167268-11167287 Msa0103780:three_prime_UTR 45.0%
CTCAAACCTTCTCCTATCCA+GGG - chr1_3:11167269-11167288 Msa0103780:three_prime_UTR 45.0%
GGAGTTCGTTGTGACTTCAT+TGG - chr1_3:11167575-11167594 Msa0103780:CDS 45.0%
! GTTGCTTTCCTGTTTGCTGA+GGG + chr1_3:11168605-11168624 None:intergenic 45.0%
!! TGTTGCTTTCCTGTTTGCTG+AGG + chr1_3:11168606-11168625 None:intergenic 45.0%
AGGACTAAAGCTGGAGACAA+GGG - chr1_3:11168628-11168647 Msa0103780:intron 45.0%
GTTCACCCTTGCTGATACTT+TGG - chr1_3:11168682-11168701 Msa0103780:intron 45.0%
! ACAGGCCAAAGTATCAGCAA+GGG + chr1_3:11168690-11168709 None:intergenic 45.0%
GGAACAGTTGGACACATCAT+TGG - chr1_3:11168710-11168729 Msa0103780:intron 45.0%
GTTGGACACATCATTGGTGT+TGG - chr1_3:11168716-11168735 Msa0103780:intron 45.0%
GATGACTCGATTGCATCACT+AGG + chr1_3:11168930-11168949 None:intergenic 45.0%
!!! TACTATATATATTTAAATTT+TGG - chr1_3:11167459-11167478 Msa0103780:CDS 5.0%
!!! TACTATATATATTTAAATTT+TGG - chr1_3:11167459-11167478 Msa0103780:CDS 5.0%
ACCTTCTCCTATCCAGGGTT+TGG - chr1_3:11167274-11167293 Msa0103780:three_prime_UTR 50.0%
ACCAAACCCTGGATAGGAGA+AGG + chr1_3:11167278-11167297 None:intergenic 50.0%
TTGCTGCCCAACCTATGACA+AGG - chr1_3:11167531-11167550 Msa0103780:CDS 50.0%
CTTGCGCCTTGTCATAGGTT+GGG + chr1_3:11167540-11167559 None:intergenic 50.0%
CAACCTATGACAAGGCGCAA+GGG - chr1_3:11167539-11167558 Msa0103780:CDS 50.0%
TTTCCCTTGCGCCTTGTCAT+AGG + chr1_3:11167545-11167564 None:intergenic 50.0%
TATGACAAGGCGCAAGGGAA+AGG - chr1_3:11167544-11167563 Msa0103780:CDS 50.0%
ATGACAAGGCGCAAGGGAAA+GGG - chr1_3:11167545-11167564 Msa0103780:CDS 50.0%
AGTGGTTGGGATTTGAACCC+CGG - chr1_3:11167977-11167996 Msa0103780:intron 50.0%
GCAAACAGGAAAGCAACAGC+AGG - chr1_3:11168608-11168627 Msa0103780:CDS 50.0%
AGCAACAGCAGGACTAAAGC+TGG - chr1_3:11168619-11168638 Msa0103780:intron 50.0%
CAGGACTAAAGCTGGAGACA+AGG - chr1_3:11168627-11168646 Msa0103780:intron 50.0%
! CACAGGCCAAAGTATCAGCA+AGG + chr1_3:11168691-11168710 None:intergenic 50.0%
CTTGCTGATACTTTGGCCTG+TGG - chr1_3:11168689-11168708 Msa0103780:intron 50.0%
ACTTTGGCCTGTGGAACAGT+TGG - chr1_3:11168698-11168717 Msa0103780:intron 50.0%
GATGTGTCCAACTGTTCCAC+AGG + chr1_3:11168708-11168727 None:intergenic 50.0%
GGCACTATGCAGTTGCTGAA+AGG + chr1_3:11169018-11169037 None:intergenic 50.0%
ACCTTCTCCTATCCAGGGTT+TGG - chr1_3:11167274-11167293 Msa0103780:three_prime_UTR 50.0%
ACCAAACCCTGGATAGGAGA+AGG + chr1_3:11167278-11167297 None:intergenic 50.0%
TTGCTGCCCAACCTATGACA+AGG - chr1_3:11167531-11167550 Msa0103780:CDS 50.0%
CTTGCGCCTTGTCATAGGTT+GGG + chr1_3:11167540-11167559 None:intergenic 50.0%
CAACCTATGACAAGGCGCAA+GGG - chr1_3:11167539-11167558 Msa0103780:CDS 50.0%
TTTCCCTTGCGCCTTGTCAT+AGG + chr1_3:11167545-11167564 None:intergenic 50.0%
TATGACAAGGCGCAAGGGAA+AGG - chr1_3:11167544-11167563 Msa0103780:CDS 50.0%
ATGACAAGGCGCAAGGGAAA+GGG - chr1_3:11167545-11167564 Msa0103780:CDS 50.0%
AGTGGTTGGGATTTGAACCC+CGG - chr1_3:11167977-11167996 Msa0103780:intron 50.0%
GCAAACAGGAAAGCAACAGC+AGG - chr1_3:11168608-11168627 Msa0103780:CDS 50.0%
AGCAACAGCAGGACTAAAGC+TGG - chr1_3:11168619-11168638 Msa0103780:intron 50.0%
CAGGACTAAAGCTGGAGACA+AGG - chr1_3:11168627-11168646 Msa0103780:intron 50.0%
! CACAGGCCAAAGTATCAGCA+AGG + chr1_3:11168691-11168710 None:intergenic 50.0%
CTTGCTGATACTTTGGCCTG+TGG - chr1_3:11168689-11168708 Msa0103780:intron 50.0%
ACTTTGGCCTGTGGAACAGT+TGG - chr1_3:11168698-11168717 Msa0103780:intron 50.0%
GATGTGTCCAACTGTTCCAC+AGG + chr1_3:11168708-11168727 None:intergenic 50.0%
GGCACTATGCAGTTGCTGAA+AGG + chr1_3:11169018-11169037 None:intergenic 50.0%
CCTTGCGCCTTGTCATAGGT+TGG + chr1_3:11167541-11167560 None:intergenic 55.0%
CCAACCTATGACAAGGCGCA+AGG - chr1_3:11167538-11167557 Msa0103780:CDS 55.0%
!! CGCAAGGGAAAGGGTGCTTT+GGG - chr1_3:11167554-11167573 Msa0103780:CDS 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr1_3:11168031-11168050 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr1_3:11168028-11168047 Msa0103780:intron 55.0%
! GATTGGCTCCCTCAGCAAAC+AGG - chr1_3:11168594-11168613 Msa0103780:CDS 55.0%
AAGCTGGAGACAAGGGACTC+AGG - chr1_3:11168635-11168654 Msa0103780:intron 55.0%
CCTTGCGCCTTGTCATAGGT+TGG + chr1_3:11167541-11167560 None:intergenic 55.0%
CCAACCTATGACAAGGCGCA+AGG - chr1_3:11167538-11167557 Msa0103780:CDS 55.0%
!! CGCAAGGGAAAGGGTGCTTT+GGG - chr1_3:11167554-11167573 Msa0103780:CDS 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr1_3:11168031-11168050 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr1_3:11168028-11168047 Msa0103780:intron 55.0%
! GATTGGCTCCCTCAGCAAAC+AGG - chr1_3:11168594-11168613 Msa0103780:CDS 55.0%
AAGCTGGAGACAAGGGACTC+AGG - chr1_3:11168635-11168654 Msa0103780:intron 55.0%
!! GCGCAAGGGAAAGGGTGCTT+TGG - chr1_3:11167553-11167572 Msa0103780:CDS 60.0%
AGGGACTCAGGCTTGCAGAC+TGG - chr1_3:11168647-11168666 Msa0103780:intron 60.0%
TTGCAGACTGGTGACCCAGC+TGG - chr1_3:11168659-11168678 Msa0103780:intron 60.0%
TGCAGACTGGTGACCCAGCT+GGG - chr1_3:11168660-11168679 Msa0103780:intron 60.0%
CAGCAAGGGTGAACCCAGCT+GGG + chr1_3:11168676-11168695 None:intergenic 60.0%
TCAGCAAGGGTGAACCCAGC+TGG + chr1_3:11168677-11168696 None:intergenic 60.0%
!! GCGCAAGGGAAAGGGTGCTT+TGG - chr1_3:11167553-11167572 Msa0103780:CDS 60.0%
AGGGACTCAGGCTTGCAGAC+TGG - chr1_3:11168647-11168666 Msa0103780:intron 60.0%
TTGCAGACTGGTGACCCAGC+TGG - chr1_3:11168659-11168678 Msa0103780:intron 60.0%
TGCAGACTGGTGACCCAGCT+GGG - chr1_3:11168660-11168679 Msa0103780:intron 60.0%
CAGCAAGGGTGAACCCAGCT+GGG + chr1_3:11168676-11168695 None:intergenic 60.0%
TCAGCAAGGGTGAACCCAGC+TGG + chr1_3:11168677-11168696 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 11167074 11169091 11167074 ID=Msa0103780;Name=Msa0103780
chr1_3 mRNA 11167074 11169091 11167074 ID=Msa0103780-mRNA-1;Parent=Msa0103780;Name=Msa0103780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=141|1|1|1|1|1|3|316|130
chr1_3 exon 11167074 11167617 11167074 ID=Msa0103780-mRNA-1:exon:4560;Parent=Msa0103780-mRNA-1
chr1_3 exon 11168552 11168635 11168552 ID=Msa0103780-mRNA-1:exon:4559;Parent=Msa0103780-mRNA-1
chr1_3 exon 11168870 11169091 11168870 ID=Msa0103780-mRNA-1:exon:4558;Parent=Msa0103780-mRNA-1
chr1_3 five_prime_UTR 11168951 11169091 11168951 ID=Msa0103780-mRNA-1:five_prime_utr;Parent=Msa0103780-mRNA-1
chr1_3 CDS 11168870 11168950 11168870 ID=Msa0103780-mRNA-1:cds;Parent=Msa0103780-mRNA-1
chr1_3 CDS 11168552 11168635 11168552 ID=Msa0103780-mRNA-1:cds;Parent=Msa0103780-mRNA-1
chr1_3 CDS 11167390 11167617 11167390 ID=Msa0103780-mRNA-1:cds;Parent=Msa0103780-mRNA-1
chr1_3 three_prime_UTR 11167074 11167389 11167074 ID=Msa0103780-mRNA-1:three_prime_utr;Parent=Msa0103780-mRNA-1
Gene Sequence

>Msa0103780

ATGGCAACTTCTATGATGACAACTTTGCCTCAATTCACTGGTCTTAGACCACAACTCAAACCTTCTCCTATCCAGGGTTTGGTTGCTGCCCAACCTATGACAAGGCGCAAGGGAAAGGGTGCTTTGGGAGTTCGTTGTGACTTCATTGGTTCATCAACTAATGTGATTATGGTGGCATCTACAACCCTAATGTTGTTTGCTGGAAGATTTGGATTGGCTCCCTCAGCAAACAGGAAAGCAACAGCAGGACTAAAGCTGGAGACAAGGGACTCAGGCTTGCAGACTGGTGACCCAGCTGGGTTCACCCTTGCTGATACTTTGGCCTGTGGAACAGTTGGACACATCATTGGTGTTGGTGTTGTTCTTGGTCTTAAGAACATTGGTGCATTGTAA

Protein sequence

>Msa0103780

MATSMMTTLPQFTGLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRCDFIGSSTNVIMVASTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACGTVGHIIGVGVVLGLKNIGAL*