Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679930 | XP_024636833.1 | 84.615 | 130 | 3 | 1 | 25 | 137 | 188 | 317 | 4.76e-68 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679930 | A0A396I6X6 | 84.615 | 130 | 3 | 1 | 25 | 137 | 188 | 317 | 2.27e-68 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657670 | Msa0679930 | 0.806648 | 7.429251e-50 | -8.615850e-47 |
| Msa0679930 | Msa0679990 | 0.836535 | 8.839753e-57 | -8.615850e-47 |
| Msa0679930 | Msa1042710 | 0.811883 | 5.601454e-51 | -8.615850e-47 |
| Msa0679930 | Msa1184730 | 0.838402 | 2.938024e-57 | -8.615850e-47 |
| Msa0679930 | Msa1252390 | 0.819755 | 9.833649e-53 | -8.615850e-47 |
| Msa0679930 | Msa1438270 | 0.816364 | 5.744033e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679930 | MtrunA17_Chr4g0026091 | 84.615 | 130 | 3 | 1 | 25 | 137 | 188 | 317 | 4.38e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679930 | AT5G22340.1 | 66.154 | 130 | 27 | 1 | 25 | 137 | 194 | 323 | 1.63e-54 | 174 |
| Msa0679930 | AT5G22340.2 | 64.583 | 96 | 17 | 1 | 25 | 103 | 194 | 289 | 2.03e-34 | 122 |
Find 60 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCATATTATAACTTTAA+TGG | 0.178636 | 4_4:-38585837 | Msa0679930:five_prime_UTR |
| CGTTGTTGTACACTTATTTA+AGG | 0.190500 | 4_4:-38582296 | Msa0679930:three_prime_UTR |
| GTGATCCCGGCAGCAATTTA+TGG | 0.193346 | 4_4:-38583236 | Msa0679930:CDS |
| CAGCTTGTGCCAGCCATGTT+TGG | 0.222883 | 4_4:-38582805 | Msa0679930:CDS |
| CTCAGCCTTCAAAATTCTTC+TGG | 0.224073 | 4_4:+38582712 | None:intergenic |
| TTCCCTACATCCTCAAATAT+TGG | 0.246136 | 4_4:-38582646 | Msa0679930:three_prime_UTR |
| CAAGAACTTGTGATTTAATA+TGG | 0.266135 | 4_4:-38585399 | Msa0679930:five_prime_UTR |
| GCACTCCTCTAATTAAAATT+AGG | 0.271442 | 4_4:+38585878 | None:intergenic |
| CGAATGGATTTCAGAAATTC+TGG | 0.279455 | 4_4:-38585376 | Msa0679930:CDS |
| TTGAAGGATAGAGAATTAAA+TGG | 0.313546 | 4_4:-38585433 | Msa0679930:five_prime_UTR |
| TGTTTCTGCTGATAGCTAAT+TGG | 0.321210 | 4_4:-38585511 | Msa0679930:five_prime_UTR |
| GTTATAAATTTAGCTTGTAT+TGG | 0.330761 | 4_4:+38582083 | None:intergenic |
| TCAGGGGCGGATGCTTTCAT+AGG | 0.358201 | 4_4:+38582180 | None:intergenic |
| TTATAAATTTAGCTTGTATT+GGG | 0.364168 | 4_4:+38582084 | None:intergenic |
| TATTGTTATCTAGTGTTTGT+TGG | 0.365243 | 4_4:+38582118 | None:intergenic |
| CGGCAGCAATTTATGGACTT+TGG | 0.370559 | 4_4:-38583229 | Msa0679930:CDS |
| AGCTTGTGCCAGCCATGTTT+GGG | 0.382763 | 4_4:-38582804 | Msa0679930:CDS |
| CTGCTATAAGTTATGCGATT+GGG | 0.398513 | 4_4:-38584306 | Msa0679930:CDS |
| GGCGGATGCTTTCATAGGGG+AGG | 0.405475 | 4_4:+38582185 | None:intergenic |
| GAGGTAACTGAATATAAATA+TGG | 0.409003 | 4_4:-38582213 | Msa0679930:three_prime_UTR |
| ATCTCCAAGGCTTGTGATCC+CGG | 0.413235 | 4_4:-38583249 | Msa0679930:CDS |
| TTGAAATAACAAACCTGAAA+AGG | 0.426737 | 4_4:+38584281 | None:intergenic |
| TATAGAGACAATAAAGACTT+AGG | 0.447368 | 4_4:-38582745 | Msa0679930:CDS |
| ATGTAAGTAGTGCTTAGTTC+CGG | 0.451394 | 4_4:+38582607 | None:intergenic |
| TTCCAATATTTGAGGATGTA+GGG | 0.453530 | 4_4:+38582644 | None:intergenic |
| TTTCCAATATTTGAGGATGT+AGG | 0.459665 | 4_4:+38582643 | None:intergenic |
| TCAAGATCGAGGTTCTAGTC+AGG | 0.465199 | 4_4:+38582162 | None:intergenic |
| TATTTGAGGAACAGTTTCAC+TGG | 0.476130 | 4_4:+38583476 | None:intergenic |
| TTGTGATTTAATATGGCGAA+TGG | 0.496486 | 4_4:-38585392 | Msa0679930:exon |
| CAGGGGCGGATGCTTTCATA+GGG | 0.504586 | 4_4:+38582181 | None:intergenic |
| TGGAAATGACCAGCTGCATC+CGG | 0.505977 | 4_4:-38582626 | Msa0679930:three_prime_UTR |
| CAATGCTCAACAAATAGAAC+AGG | 0.506641 | 4_4:-38585320 | Msa0679930:intron |
| CAAAGTCCATAAATTGCTGC+CGG | 0.509098 | 4_4:+38583230 | None:intergenic |
| CATCCAATGTATATTATTCG+AGG | 0.514060 | 4_4:-38582232 | Msa0679930:three_prime_UTR |
| AAGTTTGTAGATATTCTACT+TGG | 0.515979 | 4_4:-38582320 | Msa0679930:three_prime_UTR |
| TGCTTAGTTCCGGATGCAGC+TGG | 0.525733 | 4_4:+38582617 | None:intergenic |
| CTGGTCATTTCCAATATTTG+AGG | 0.526896 | 4_4:+38582636 | None:intergenic |
| GAGAAAACAATCAGGGGTAG+TGG | 0.540135 | 4_4:-38583284 | Msa0679930:intron |
| GCTGCCGGGATCACAAGCCT+TGG | 0.555710 | 4_4:+38583245 | None:intergenic |
| ACAAACATCCCAAACATGGC+TGG | 0.556898 | 4_4:+38582796 | None:intergenic |
| TGCTATAAGTTATGCGATTG+GGG | 0.558016 | 4_4:-38584305 | Msa0679930:CDS |
| GTATAGCACTTTCATCTCCA+AGG | 0.559840 | 4_4:-38583262 | Msa0679930:CDS |
| AAAGTCCATAAATTGCTGCC+GGG | 0.580475 | 4_4:+38583231 | None:intergenic |
| TTAGTTTCTAATCAAGATCG+AGG | 0.582530 | 4_4:+38582151 | None:intergenic |
| GCGGATGCTTTCATAGGGGA+GGG | 0.583144 | 4_4:+38582186 | None:intergenic |
| CGGATGCTTTCATAGGGGAG+GGG | 0.583285 | 4_4:+38582187 | None:intergenic |
| TTACCTCGAATAATATACAT+TGG | 0.584939 | 4_4:+38582229 | None:intergenic |
| GCTGCTATAAGTTATGCGAT+TGG | 0.586026 | 4_4:-38584307 | Msa0679930:CDS |
| CAAGATCGAGGTTCTAGTCA+GGG | 0.586521 | 4_4:+38582163 | None:intergenic |
| CATGTTGATACAAGAGCTGA+AGG | 0.591014 | 4_4:+38583511 | None:intergenic |
| TTGTTGAGCATTGTTGTCGT+CGG | 0.594031 | 4_4:+38585330 | None:intergenic |
| TGCCAACGACATGAAAACAT+AGG | 0.602193 | 4_4:+38585537 | None:intergenic |
| TTTAGTGAGTGATGTAGATG+AGG | 0.613607 | 4_4:-38585473 | Msa0679930:five_prime_UTR |
| GTAGACAAACATCCCAAACA+TGG | 0.634660 | 4_4:+38582792 | None:intergenic |
| ATCGAGGTTCTAGTCAGGGG+CGG | 0.652386 | 4_4:+38582167 | None:intergenic |
| AAAGTGTGATCTGCTGAACA+TGG | 0.653212 | 4_4:+38582668 | None:intergenic |
| AAGATCGAGGTTCTAGTCAG+GGG | 0.657360 | 4_4:+38582164 | None:intergenic |
| CTTAAATAAGTGTACAACAA+CGG | 0.677508 | 4_4:+38582297 | None:intergenic |
| ATTATACTTAATCATTGACG+TGG | 0.680146 | 4_4:-38585563 | Msa0679930:five_prime_UTR |
| AGGGGCGGATGCTTTCATAG+GGG | 0.716980 | 4_4:+38582182 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTAAGTATAATTTTTTT+AGG | + | chr4_4:38582416-38582435 | None:intergenic | 10.0% |
| !!! | TTTTGTTTTTTATTTGAATT+TGG | - | chr4_4:38582908-38582927 | Msa0679930:intron | 10.0% |
| !!! | TTTACTTATTTTTCATAGTA+AGG | - | chr4_4:38582173-38582192 | Msa0679930:three_prime_UTR | 15.0% |
| !! | TGAATTATTATTTAATTACC+AGG | + | chr4_4:38583039-38583058 | None:intergenic | 15.0% |
| !! | AAATAAATAAAAAAATCAGC+AGG | + | chr4_4:38583269-38583288 | None:intergenic | 15.0% |
| !!! | ATATTTTTGTTATAAGATGA+AGG | + | chr4_4:38583587-38583606 | None:intergenic | 15.0% |
| !! | TAAATATGATTAAAGTCAAA+TGG | - | chr4_4:38583898-38583917 | Msa0679930:intron | 15.0% |
| !! | AAATATGATTAAAGTCAAAT+GGG | - | chr4_4:38583899-38583918 | Msa0679930:intron | 15.0% |
| !! | TGATCAAATATTAAGTTAAT+TGG | + | chr4_4:38584346-38584365 | None:intergenic | 15.0% |
| !!! | AAATATTTTATAAGCAGAAT+TGG | - | chr4_4:38584648-38584667 | Msa0679930:intron | 15.0% |
| !!! | TTATAAATTTAGCTTGTATT+GGG | + | chr4_4:38585904-38585923 | None:intergenic | 15.0% |
| !! | GCTTCATATTATAACTTTAA+TGG | - | chr4_4:38582148-38582167 | Msa0679930:three_prime_UTR | 20.0% |
| !! | TATTTAATTACCAGGAAATA+AGG | + | chr4_4:38583031-38583050 | None:intergenic | 20.0% |
| !! | ATGATAAGATTAACTTTAGA+TGG | - | chr4_4:38583493-38583512 | Msa0679930:CDS | 20.0% |
| !! | AATATGATTAAAGTCAAATG+GGG | - | chr4_4:38583900-38583919 | Msa0679930:intron | 20.0% |
| !!! | CATTAGAAACATTTGATTTA+GGG | + | chr4_4:38584096-38584115 | None:intergenic | 20.0% |
| !!! | TCATTAGAAACATTTGATTT+AGG | + | chr4_4:38584097-38584116 | None:intergenic | 20.0% |
| !!! | TTCTTTTTCATGAATATTTG+AGG | + | chr4_4:38584526-38584545 | None:intergenic | 20.0% |
| !!! | AAATTCAAAGTGAAAGTTTT+CGG | + | chr4_4:38584564-38584583 | None:intergenic | 20.0% |
| !!! | TATTTTTTTGACCAAAACAA+GGG | + | chr4_4:38584633-38584652 | None:intergenic | 20.0% |
| !!! | ATATTTTTTTGACCAAAACA+AGG | + | chr4_4:38584634-38584653 | None:intergenic | 20.0% |
| !! | AAAATACCAAACTTAAAATG+TGG | + | chr4_4:38584966-38584985 | None:intergenic | 20.0% |
| !!! | ACATACTATATGACATTTTT+TGG | + | chr4_4:38585414-38585433 | None:intergenic | 20.0% |
| !!! | GTTATAAATTTAGCTTGTAT+TGG | + | chr4_4:38585905-38585924 | None:intergenic | 20.0% |
| !!! | AAGCTCCTAATTTTAATTAG+AGG | - | chr4_4:38582102-38582121 | Msa0679930:three_prime_UTR | 25.0% |
| !!! | CTAATGAAACAACCTTTTTT+GGG | + | chr4_4:38582273-38582292 | None:intergenic | 25.0% |
| ! | AATAACTATTCATCAGTTGT+AGG | - | chr4_4:38582309-38582328 | Msa0679930:three_prime_UTR | 25.0% |
| ! | ATAACTATTCATCAGTTGTA+GGG | - | chr4_4:38582310-38582329 | Msa0679930:three_prime_UTR | 25.0% |
| ! | ACAAAGGATAAAAATAATGG+TGG | + | chr4_4:38582390-38582409 | None:intergenic | 25.0% |
| ! | TGCACAAAGGATAAAAATAA+TGG | + | chr4_4:38582393-38582412 | None:intergenic | 25.0% |
| !!! | TAATTTTTTTAGGTGCACAA+AGG | + | chr4_4:38582406-38582425 | None:intergenic | 25.0% |
| ! | ATTATACTTAATCATTGACG+TGG | - | chr4_4:38582422-38582441 | Msa0679930:intron | 25.0% |
| ! | ACATCACTCACTAAAAATTA+TGG | + | chr4_4:38582507-38582526 | None:intergenic | 25.0% |
| ! | TTGAAGGATAGAGAATTAAA+TGG | - | chr4_4:38582552-38582571 | Msa0679930:intron | 25.0% |
| ! | CAAGAACTTGTGATTTAATA+TGG | - | chr4_4:38582586-38582605 | Msa0679930:intron | 25.0% |
| !! | AACTTTTTGTTAAGGGATAA+TGG | + | chr4_4:38582958-38582977 | None:intergenic | 25.0% |
| ! | ATTATCCCTTAACAAAAAGT+TGG | - | chr4_4:38582957-38582976 | Msa0679930:intron | 25.0% |
| !! | AGTTTCCAACTTTTTGTTAA+GGG | + | chr4_4:38582965-38582984 | None:intergenic | 25.0% |
| !! | TGTTCTTTATTTGCTAAAGT+CGG | - | chr4_4:38583183-38583202 | Msa0679930:intron | 25.0% |
| ! | AAATGTAAAGTTTACCTGTA+CGG | + | chr4_4:38583378-38583397 | None:intergenic | 25.0% |
| ! | GAAGAAAAAACATAATTGAG+CGG | + | chr4_4:38583473-38583492 | None:intergenic | 25.0% |
| ! | AAACCATTATGATAAGACAT+AGG | + | chr4_4:38583528-38583547 | None:intergenic | 25.0% |
| ! | TTGAAATAACAAACCTGAAA+AGG | + | chr4_4:38583707-38583726 | None:intergenic | 25.0% |
| ! | TCTAGTTAAATTCAACAAGA+CGG | + | chr4_4:38583741-38583760 | None:intergenic | 25.0% |
| ! | AATTTAACTAGATTTGTGCT+TGG | - | chr4_4:38583749-38583768 | Msa0679930:intron | 25.0% |
| ! | ATATGATTAAAGTCAAATGG+GGG | - | chr4_4:38583901-38583920 | Msa0679930:intron | 25.0% |
| ! | AACATCTTGTGTAAAAAACA+GGG | - | chr4_4:38583991-38584010 | Msa0679930:intron | 25.0% |
| !! | AAATGTTTCTAATGATCTCA+TGG | - | chr4_4:38584102-38584121 | Msa0679930:intron | 25.0% |
| !!! | TGTAGTACTGGTTTAAAATA+GGG | + | chr4_4:38584270-38584289 | None:intergenic | 25.0% |
| !!! | ATGTAGTACTGGTTTAAAAT+AGG | + | chr4_4:38584271-38584290 | None:intergenic | 25.0% |
| !!! | CGCATTTTACTATTTTAATC+AGG | - | chr4_4:38584320-38584339 | Msa0679930:intron | 25.0% |
| ! | AAAAAGAAGTCAAAGAAGTA+CGG | - | chr4_4:38584538-38584557 | Msa0679930:intron | 25.0% |
| !! | TCTCATCAGTATTTTATCAA+CGG | - | chr4_4:38584785-38584804 | Msa0679930:intron | 25.0% |
| ! | TATAGAGACAATAAAGACTT+AGG | - | chr4_4:38585240-38585259 | Msa0679930:intron | 25.0% |
| !! | AATTTCCAGAAGAATTTTGA+AGG | - | chr4_4:38585268-38585287 | Msa0679930:intron | 25.0% |
| !!! | TATATGACATTTTTTGGTAC+AGG | + | chr4_4:38585408-38585427 | None:intergenic | 25.0% |
| ! | GTATGTGTATATTGAAAGAA+TGG | - | chr4_4:38585428-38585447 | Msa0679930:five_prime_UTR | 25.0% |
| ! | AAAAGTCTATTTAAGTCCAA+TGG | - | chr4_4:38585485-38585504 | Msa0679930:five_prime_UTR | 25.0% |
| ! | TTATATGCAAATGTTAACAG+TGG | + | chr4_4:38585592-38585611 | None:intergenic | 25.0% |
| ! | AAGTTTGTAGATATTCTACT+TGG | - | chr4_4:38585665-38585684 | Msa0679930:intron | 25.0% |
| ! | CTTAAATAAGTGTACAACAA+CGG | + | chr4_4:38585691-38585710 | None:intergenic | 25.0% |
| ! | TTACCTCGAATAATATACAT+TGG | + | chr4_4:38585759-38585778 | None:intergenic | 25.0% |
| ! | GAGGTAACTGAATATAAATA+TGG | - | chr4_4:38585772-38585791 | Msa0679930:intron | 25.0% |
| ! | TATTGTTATCTAGTGTTTGT+TGG | + | chr4_4:38585870-38585889 | None:intergenic | 25.0% |
| GCACTCCTCTAATTAAAATT+AGG | + | chr4_4:38582110-38582129 | None:intergenic | 30.0% | |
| !! | TTAAAGCCTCGTAATTTGTT+GGG | - | chr4_4:38582217-38582236 | Msa0679930:three_prime_UTR | 30.0% |
| !!! | CCTAATGAAACAACCTTTTT+TGG | + | chr4_4:38582274-38582293 | None:intergenic | 30.0% |
| ! | CCAAAAAAGGTTGTTTCATT+AGG | - | chr4_4:38582271-38582290 | Msa0679930:three_prime_UTR | 30.0% |
| ! | AAAAAGGTTGTTTCATTAGG+CGG | - | chr4_4:38582274-38582293 | Msa0679930:three_prime_UTR | 30.0% |
| ! | TGTCTTGCAAACATTTTTGA+AGG | - | chr4_4:38582536-38582555 | Msa0679930:intron | 30.0% |
| TTGTGATTTAATATGGCGAA+TGG | - | chr4_4:38582593-38582612 | Msa0679930:three_prime_UTR | 30.0% | |
| !!! | GGATTTTTGAAACAGTAAAC+AGG | - | chr4_4:38582863-38582882 | Msa0679930:intron | 30.0% |
| ! | CAGTTTCCAACTTTTTGTTA+AGG | + | chr4_4:38582966-38582985 | None:intergenic | 30.0% |
| CTTAACAAAAAGTTGGAAAC+TGG | - | chr4_4:38582964-38582983 | Msa0679930:intron | 30.0% | |
| TTGATCAGTAACTATTGATC+TGG | - | chr4_4:38583233-38583252 | Msa0679930:CDS | 30.0% | |
| TGACAAGACTAGAAAAACAA+AGG | + | chr4_4:38583406-38583425 | None:intergenic | 30.0% | |
| TTGCCTATGTCTTATCATAA+TGG | - | chr4_4:38583522-38583541 | Msa0679930:CDS | 30.0% | |
| !! | ATTTTAATGCCCATCTTTTC+AGG | - | chr4_4:38583656-38583675 | Msa0679930:intron | 30.0% |
| TACAAATGATAGTTCGTGAT+CGG | + | chr4_4:38583867-38583886 | None:intergenic | 30.0% | |
| TATGATTAAAGTCAAATGGG+GGG | - | chr4_4:38583902-38583921 | Msa0679930:intron | 30.0% | |
| !! | TTACACAAGATGTTGTTTCT+AGG | + | chr4_4:38583985-38584004 | None:intergenic | 30.0% |
| CAACATCTTGTGTAAAAAAC+AGG | - | chr4_4:38583990-38584009 | Msa0679930:intron | 30.0% | |
| ! | GAAGCCTAGTGAATTTTAAA+TGG | - | chr4_4:38584236-38584255 | Msa0679930:intron | 30.0% |
| ! | CCAACCATTTAAAATTCACT+AGG | + | chr4_4:38584243-38584262 | None:intergenic | 30.0% |
| ! | CCTAGTGAATTTTAAATGGT+TGG | - | chr4_4:38584240-38584259 | Msa0679930:intron | 30.0% |
| ! | TCAATCTTCGTTGCTTATTT+TGG | - | chr4_4:38584412-38584431 | Msa0679930:intron | 30.0% |
| ! | TTTTCTCGAAAGAATCACTA+AGG | + | chr4_4:38584688-38584707 | None:intergenic | 30.0% |
| ATTCTTTCGAGAAAACAATC+AGG | - | chr4_4:38584693-38584712 | Msa0679930:intron | 30.0% | |
| TTCTTTCGAGAAAACAATCA+GGG | - | chr4_4:38584694-38584713 | Msa0679930:intron | 30.0% | |
| ! | GTATTTTATCAACGGTTTGT+TGG | - | chr4_4:38584793-38584812 | Msa0679930:intron | 30.0% |
| ! | ACACATGTATGATGTTTCTA+TGG | + | chr4_4:38584832-38584851 | None:intergenic | 30.0% |
| !!! | AACGATCCACATTTTAAGTT+TGG | - | chr4_4:38584957-38584976 | Msa0679930:intron | 30.0% |
| ! | AGTAAAGCACTTTCAAGAAA+CGG | + | chr4_4:38585107-38585126 | None:intergenic | 30.0% |
| TTCCAATATTTGAGGATGTA+GGG | + | chr4_4:38585344-38585363 | None:intergenic | 30.0% | |
| TTTCCAATATTTGAGGATGT+AGG | + | chr4_4:38585345-38585364 | None:intergenic | 30.0% | |
| ! | AAAGTTCTAACTCATACCAT+TGG | + | chr4_4:38585504-38585523 | None:intergenic | 30.0% |
| CGTTGTTGTACACTTATTTA+AGG | - | chr4_4:38585689-38585708 | Msa0679930:intron | 30.0% | |
| CATCCAATGTATATTATTCG+AGG | - | chr4_4:38585753-38585772 | Msa0679930:intron | 30.0% | |
| TTAGTTTCTAATCAAGATCG+AGG | + | chr4_4:38585837-38585856 | None:intergenic | 30.0% | |
| ! | CTTAAAGCCTCGTAATTTGT+TGG | - | chr4_4:38582216-38582235 | Msa0679930:three_prime_UTR | 35.0% |
| TATTCATCAGTTGTAGGGTT+TGG | - | chr4_4:38582315-38582334 | Msa0679930:three_prime_UTR | 35.0% | |
| ! | ATCCTATGTTTTCATGTCGT+TGG | - | chr4_4:38582446-38582465 | Msa0679930:intron | 35.0% |
| ! | TGTTTCTGCTGATAGCTAAT+TGG | - | chr4_4:38582474-38582493 | Msa0679930:intron | 35.0% |
| TTTAGTGAGTGATGTAGATG+AGG | - | chr4_4:38582512-38582531 | Msa0679930:intron | 35.0% | |
| ! | CGAATGGATTTCAGAAATTC+TGG | - | chr4_4:38582609-38582628 | Msa0679930:three_prime_UTR | 35.0% |
| CAATGCTCAACAAATAGAAC+AGG | - | chr4_4:38582665-38582684 | Msa0679930:three_prime_UTR | 35.0% | |
| ! | TGTGTTTGGTTTCTTTGATC+AGG | - | chr4_4:38582780-38582799 | Msa0679930:CDS | 35.0% |
| ATCATAGAGACTAACAGTGA+TGG | - | chr4_4:38582839-38582858 | Msa0679930:intron | 35.0% | |
| !! | TTCAAGTTTGCCTTATTTCC+TGG | - | chr4_4:38583018-38583037 | Msa0679930:intron | 35.0% |
| ATCAAAACATACATGCCTTG+AGG | + | chr4_4:38583218-38583237 | None:intergenic | 35.0% | |
| AGAATTACTACTTCTCTCTG+TGG | - | chr4_4:38583310-38583329 | Msa0679930:intron | 35.0% | |
| GAATTACTACTTCTCTCTGT+GGG | - | chr4_4:38583311-38583330 | Msa0679930:intron | 35.0% | |
| !!! | CTTGATAGTTTTTTCCGTAC+AGG | - | chr4_4:38583361-38583380 | Msa0679930:intron | 35.0% |
| ! | TGGTTTAACTTTCACCATCA+TGG | - | chr4_4:38583542-38583561 | Msa0679930:intron | 35.0% |
| ATTTGCAACTTACACCATGA+TGG | + | chr4_4:38583559-38583578 | None:intergenic | 35.0% | |
| TTATAGCAGCCTGAAAAGAT+GGG | + | chr4_4:38583668-38583687 | None:intergenic | 35.0% | |
| CTGCTATAAGTTATGCGATT+GGG | - | chr4_4:38583679-38583698 | Msa0679930:intron | 35.0% | |
| TGCTATAAGTTATGCGATTG+GGG | - | chr4_4:38583680-38583699 | Msa0679930:intron | 35.0% | |
| CTTGTGTAAAAAACAGGGTA+AGG | - | chr4_4:38583996-38584015 | Msa0679930:intron | 35.0% | |
| TTAAACCAGTACTACATGTG+TGG | - | chr4_4:38584274-38584293 | Msa0679930:intron | 35.0% | |
| TTAATCCACACATGTAGTAC+TGG | + | chr4_4:38584282-38584301 | None:intergenic | 35.0% | |
| ATCATGATAATTGCTCTCTG+TGG | - | chr4_4:38584362-38584381 | Msa0679930:intron | 35.0% | |
| TCATGATAATTGCTCTCTGT+GGG | - | chr4_4:38584363-38584382 | Msa0679930:intron | 35.0% | |
| TATTTGAGGAACAGTTTCAC+TGG | + | chr4_4:38584512-38584531 | None:intergenic | 35.0% | |
| TCTTTCGAGAAAACAATCAG+GGG | - | chr4_4:38584695-38584714 | Msa0679930:intron | 35.0% | |
| TCAAAAACCTCACTTTCTTG+AGG | - | chr4_4:38584860-38584879 | Msa0679930:intron | 35.0% | |
| CAAAAACCTCACTTTCTTGA+GGG | - | chr4_4:38584861-38584880 | Msa0679930:intron | 35.0% | |
| TCAACTATCGTTTAACACGT+TGG | - | chr4_4:38585129-38585148 | Msa0679930:intron | 35.0% | |
| TTCCCTACATCCTCAAATAT+TGG | - | chr4_4:38585339-38585358 | Msa0679930:CDS | 35.0% | |
| CTGGTCATTTCCAATATTTG+AGG | + | chr4_4:38585352-38585371 | None:intergenic | 35.0% | |
| ATGTAAGTAGTGCTTAGTTC+CGG | + | chr4_4:38585381-38585400 | None:intergenic | 35.0% | |
| !!! | TATTTAAGGCACCGTGTTTT+TGG | - | chr4_4:38585703-38585722 | Msa0679930:intron | 35.0% |
| TGTATGTCGAACCAAAAACA+CGG | + | chr4_4:38585717-38585736 | None:intergenic | 35.0% | |
| AAAAAGGGCTTCTGGTCTAA+TGG | - | chr4_4:38582076-38582095 | Msa0679930:three_prime_UTR | 40.0% | |
| !!! | CCTTTTTTGGGTTTGAAGAG+TGG | + | chr4_4:38582261-38582280 | None:intergenic | 40.0% |
| CCACTCTTCAAACCCAAAAA+AGG | - | chr4_4:38582258-38582277 | Msa0679930:three_prime_UTR | 40.0% | |
| TGCCAACGACATGAAAACAT+AGG | + | chr4_4:38582451-38582470 | None:intergenic | 40.0% | |
| ! | TTGTTGAGCATTGTTGTCGT+CGG | + | chr4_4:38582658-38582677 | None:intergenic | 40.0% |
| ATAGAGACTAACAGTGATGG+CGG | - | chr4_4:38582842-38582861 | Msa0679930:intron | 40.0% | |
| AAACAGGAAGATGACTGCAA+AGG | - | chr4_4:38582879-38582898 | Msa0679930:intron | 40.0% | |
| AAGAGCGGTATCATTCAGAT+TGG | + | chr4_4:38583154-38583173 | None:intergenic | 40.0% | |
| CTTATAGCAGCCTGAAAAGA+TGG | + | chr4_4:38583669-38583688 | None:intergenic | 40.0% | |
| GCTGCTATAAGTTATGCGAT+TGG | - | chr4_4:38583678-38583697 | Msa0679930:intron | 40.0% | |
| CATGTTGATACAAGAGCTGA+AGG | + | chr4_4:38584477-38584496 | None:intergenic | 40.0% | |
| GTTAACAACAGAACGCTAAC+TGG | + | chr4_4:38584600-38584619 | None:intergenic | 40.0% | |
| !! | CATTCGCTTATCCCTTGTTT+TGG | - | chr4_4:38584619-38584638 | Msa0679930:intron | 40.0% |
| GTATAGCACTTTCATCTCCA+AGG | - | chr4_4:38584723-38584742 | Msa0679930:intron | 40.0% | |
| AAAGTCCATAAATTGCTGCC+GGG | + | chr4_4:38584757-38584776 | None:intergenic | 40.0% | |
| CAAAGTCCATAAATTGCTGC+CGG | + | chr4_4:38584758-38584777 | None:intergenic | 40.0% | |
| !!! | CAACGGTTTGTTGGATTTTC+AGG | - | chr4_4:38584802-38584821 | Msa0679930:intron | 40.0% |
| CTAAATCCCTCAAGAAAGTG+AGG | + | chr4_4:38584870-38584889 | None:intergenic | 40.0% | |
| ATCGTTCGATCTTGATCCAA+TGG | + | chr4_4:38584943-38584962 | None:intergenic | 40.0% | |
| GTTGGTCGTTGGATCAAAAT+CGG | + | chr4_4:38585033-38585052 | None:intergenic | 40.0% | |
| TTATGCAGTCAGAACATCGT+TGG | + | chr4_4:38585051-38585070 | None:intergenic | 40.0% | |
| ! | GCACTTTCAAGAAACGGATT+TGG | + | chr4_4:38585101-38585120 | None:intergenic | 40.0% |
| GTAGACAAACATCCCAAACA+TGG | + | chr4_4:38585196-38585215 | None:intergenic | 40.0% | |
| CTCAGCCTTCAAAATTCTTC+TGG | + | chr4_4:38585276-38585295 | None:intergenic | 40.0% | |
| !! | CAGAAGAATTTTGAAGGCTG+AGG | - | chr4_4:38585274-38585293 | Msa0679930:intron | 40.0% |
| !! | AAGAATTTTGAAGGCTGAGG+TGG | - | chr4_4:38585277-38585296 | Msa0679930:intron | 40.0% |
| AAAGTGTGATCTGCTGAACA+TGG | + | chr4_4:38585320-38585339 | None:intergenic | 40.0% | |
| ATGTCTTTGTAGCATGCATG+TGG | - | chr4_4:38585615-38585634 | Msa0679930:intron | 40.0% | |
| CACAGAATTCGCAACTGGAT+CGG | + | chr4_4:38582764-38582783 | None:intergenic | 45.0% | |
| CCAAACACAGAATTCGCAAC+TGG | + | chr4_4:38582769-38582788 | None:intergenic | 45.0% | |
| CCAGTTGCGAATTCTGTGTT+TGG | - | chr4_4:38582766-38582785 | Msa0679930:CDS | 45.0% | |
| TGAGTCTTGCTCTGTTGTCT+AGG | + | chr4_4:38583109-38583128 | None:intergenic | 45.0% | |
| AGAACACACTGAGTCAAGAG+CGG | + | chr4_4:38583169-38583188 | None:intergenic | 45.0% | |
| AGTCGGTAACACTTACCTCA+AGG | - | chr4_4:38583200-38583219 | Msa0679930:CDS | 45.0% | |
| CTACTTCTCTCTGTGGGTAT+TGG | - | chr4_4:38583317-38583336 | Msa0679930:intron | 45.0% | |
| !! | TCTCTCTGTGGGTATTGGAT+TGG | - | chr4_4:38583322-38583341 | Msa0679930:intron | 45.0% |
| !! | CTCTCTGTGGGTATTGGATT+GGG | - | chr4_4:38583323-38583342 | Msa0679930:intron | 45.0% |
| ! | GGTATTGGATTGGGTTGTAG+CGG | - | chr4_4:38583332-38583351 | Msa0679930:intron | 45.0% |
| GTTGTTGTCACGTGACTGAA+AGG | - | chr4_4:38583945-38583964 | Msa0679930:intron | 45.0% | |
| GCTGCGTACAATACACCAAT+CGG | - | chr4_4:38584018-38584037 | Msa0679930:intron | 45.0% | |
| CGTACAATACACCAATCGGT+GGG | - | chr4_4:38584022-38584041 | Msa0679930:intron | 45.0% | |
| ! | ACATTTGATTTAGGGCAGCC+CGG | + | chr4_4:38584088-38584107 | None:intergenic | 45.0% |
| GAGAAAACAATCAGGGGTAG+TGG | - | chr4_4:38584701-38584720 | Msa0679930:intron | 45.0% | |
| CGGCAGCAATTTATGGACTT+TGG | - | chr4_4:38584756-38584775 | Msa0679930:intron | 45.0% | |
| CAAGGTCGTGACTGCATTAA+TGG | + | chr4_4:38584916-38584935 | None:intergenic | 45.0% | |
| CATTAATGCAGTCACGACCT+TGG | - | chr4_4:38584914-38584933 | Msa0679930:intron | 45.0% | |
| TCTTGATCCAATGGCTACCA+AGG | + | chr4_4:38584934-38584953 | None:intergenic | 45.0% | |
| ACAAACATCCCAAACATGGC+TGG | + | chr4_4:38585192-38585211 | None:intergenic | 45.0% | |
| ! | AAGATCGAGGTTCTAGTCAG+GGG | + | chr4_4:38585824-38585843 | None:intergenic | 45.0% |
| ! | CAAGATCGAGGTTCTAGTCA+GGG | + | chr4_4:38585825-38585844 | None:intergenic | 45.0% |
| ! | TCAAGATCGAGGTTCTAGTC+AGG | + | chr4_4:38585826-38585845 | None:intergenic | 45.0% |
| !! | AGCCTCGTAATTTGTTGGGC+CGG | - | chr4_4:38582221-38582240 | Msa0679930:three_prime_UTR | 50.0% |
| TTCGCAACTGGATCGGTACA+AGG | + | chr4_4:38582757-38582776 | None:intergenic | 50.0% | |
| GGAAGATGACTGCAAAGGTC+TGG | - | chr4_4:38582884-38582903 | Msa0679930:intron | 50.0% | |
| ! | ATGCGATTGGGGTCCTTTTC+AGG | - | chr4_4:38583691-38583710 | Msa0679930:intron | 50.0% |
| TCACGTGACTGAAAGGTCAC+AGG | - | chr4_4:38583952-38583971 | Msa0679930:intron | 50.0% | |
| GCGTACAATACACCAATCGG+TGG | - | chr4_4:38584021-38584040 | Msa0679930:intron | 50.0% | |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr4_4:38584061-38584080 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | + | chr4_4:38584062-38584081 | None:intergenic | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr4_4:38584066-38584085 | Msa0679930:intron | 50.0% |
| ATCTCCAAGGCTTGTGATCC+CGG | - | chr4_4:38584736-38584755 | Msa0679930:intron | 50.0% | |
| GTGATCCCGGCAGCAATTTA+TGG | - | chr4_4:38584749-38584768 | Msa0679930:intron | 50.0% | |
| GTCAGAACATCGTTGGTCGT+TGG | + | chr4_4:38585044-38585063 | None:intergenic | 50.0% | |
| AGCTTGTGCCAGCCATGTTT+GGG | - | chr4_4:38585181-38585200 | Msa0679930:intron | 50.0% | |
| TGGAAATGACCAGCTGCATC+CGG | - | chr4_4:38585359-38585378 | Msa0679930:CDS | 50.0% | |
| CACCGGCCCAACAAATTACG+AGG | + | chr4_4:38582226-38582245 | None:intergenic | 55.0% | |
| !! | GTAATTTGTTGGGCCGGTGC+TGG | - | chr4_4:38582227-38582246 | Msa0679930:three_prime_UTR | 55.0% |
| TGGGGGGAACATTGACGCAA+CGG | - | chr4_4:38583918-38583937 | Msa0679930:intron | 55.0% | |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr4_4:38584067-38584086 | Msa0679930:intron | 55.0% |
| ! | GTCACGACCTTGGTAGCCAT+TGG | - | chr4_4:38584924-38584943 | Msa0679930:intron | 55.0% |
| AACATGGCTGGCACAAGCTG+CGG | + | chr4_4:38585180-38585199 | None:intergenic | 55.0% | |
| CAGCTTGTGCCAGCCATGTT+TGG | - | chr4_4:38585180-38585199 | Msa0679930:intron | 55.0% | |
| TGCTTAGTTCCGGATGCAGC+TGG | + | chr4_4:38585371-38585390 | None:intergenic | 55.0% | |
| CGGATGCTTTCATAGGGGAG+GGG | + | chr4_4:38585801-38585820 | None:intergenic | 55.0% | |
| GCGGATGCTTTCATAGGGGA+GGG | + | chr4_4:38585802-38585821 | None:intergenic | 55.0% | |
| AGGGGCGGATGCTTTCATAG+GGG | + | chr4_4:38585806-38585825 | None:intergenic | 55.0% | |
| CAGGGGCGGATGCTTTCATA+GGG | + | chr4_4:38585807-38585826 | None:intergenic | 55.0% | |
| TCAGGGGCGGATGCTTTCAT+AGG | + | chr4_4:38585808-38585827 | None:intergenic | 55.0% | |
| ! | ATCGAGGTTCTAGTCAGGGG+CGG | + | chr4_4:38585821-38585840 | None:intergenic | 55.0% |
| AGTGGACAACGCTCCAGCAC+CGG | + | chr4_4:38582243-38582262 | None:intergenic | 60.0% | |
| ACATGGCTGGCACAAGCTGC+GGG | + | chr4_4:38585179-38585198 | None:intergenic | 60.0% | |
| GGCGGATGCTTTCATAGGGG+AGG | + | chr4_4:38585803-38585822 | None:intergenic | 60.0% | |
| CAATCGGTGGGACCCCTTCC+CGG | - | chr4_4:38584034-38584053 | Msa0679930:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr4_4:38584049-38584068 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr4_4:38584050-38584069 | None:intergenic | 65.0% | |
| TGCATACGCAGGGTCCGGGA+AGG | + | chr4_4:38584051-38584070 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+AGG | - | chr4_4:38584050-38584069 | Msa0679930:intron | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | + | chr4_4:38584055-38584074 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | + | chr4_4:38584056-38584075 | None:intergenic | 65.0% | |
| GCTGCCGGGATCACAAGCCT+TGG | + | chr4_4:38584743-38584762 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCGAT+TGG | + | chr4_4:38584036-38584055 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 38582075 | 38585932 | 38582075 | ID=Msa0679930;Name=Msa0679930 |
| chr4_4 | mRNA | 38582075 | 38585932 | 38582075 | ID=Msa0679930-mRNA-1;Parent=Msa0679930;Name=Msa0679930-mRNA-1;_AED=0.29;_eAED=0.29;_QI=388|0.66|0.85|1|0.66|0.42|7|404|137 |
| chr4_4 | exon | 38582075 | 38582346 | 38582075 | ID=Msa0679930-mRNA-1:exon:9094;Parent=Msa0679930-mRNA-1 |
| chr4_4 | exon | 38582588 | 38582824 | 38582588 | ID=Msa0679930-mRNA-1:exon:9093;Parent=Msa0679930-mRNA-1 |
| chr4_4 | exon | 38583184 | 38583292 | 38583184 | ID=Msa0679930-mRNA-1:exon:9092;Parent=Msa0679930-mRNA-1 |
| chr4_4 | exon | 38583453 | 38583542 | 38583453 | ID=Msa0679930-mRNA-1:exon:9091;Parent=Msa0679930-mRNA-1 |
| chr4_4 | exon | 38584295 | 38584329 | 38584295 | ID=Msa0679930-mRNA-1:exon:9090;Parent=Msa0679930-mRNA-1 |
| chr4_4 | exon | 38585321 | 38585631 | 38585321 | ID=Msa0679930-mRNA-1:exon:9089;Parent=Msa0679930-mRNA-1 |
| chr4_4 | exon | 38585781 | 38585932 | 38585781 | ID=Msa0679930-mRNA-1:exon:9088;Parent=Msa0679930-mRNA-1 |
| chr4_4 | five_prime_UTR | 38585781 | 38585932 | 38585781 | ID=Msa0679930-mRNA-1:five_prime_utr;Parent=Msa0679930-mRNA-1 |
| chr4_4 | five_prime_UTR | 38585396 | 38585631 | 38585396 | ID=Msa0679930-mRNA-1:five_prime_utr;Parent=Msa0679930-mRNA-1 |
| chr4_4 | CDS | 38585321 | 38585395 | 38585321 | ID=Msa0679930-mRNA-1:cds;Parent=Msa0679930-mRNA-1 |
| chr4_4 | CDS | 38584295 | 38584329 | 38584295 | ID=Msa0679930-mRNA-1:cds;Parent=Msa0679930-mRNA-1 |
| chr4_4 | CDS | 38583453 | 38583542 | 38583453 | ID=Msa0679930-mRNA-1:cds;Parent=Msa0679930-mRNA-1 |
| chr4_4 | CDS | 38583184 | 38583292 | 38583184 | ID=Msa0679930-mRNA-1:cds;Parent=Msa0679930-mRNA-1 |
| chr4_4 | CDS | 38582720 | 38582824 | 38582720 | ID=Msa0679930-mRNA-1:cds;Parent=Msa0679930-mRNA-1 |
| chr4_4 | three_prime_UTR | 38582588 | 38582719 | 38582588 | ID=Msa0679930-mRNA-1:three_prime_utr;Parent=Msa0679930-mRNA-1 |
| chr4_4 | three_prime_UTR | 38582075 | 38582346 | 38582075 | ID=Msa0679930-mRNA-1:three_prime_utr;Parent=Msa0679930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
