AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1184730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184730 MtrunA17_Chr8g0350161 87.425 334 5 3 1 298 1 333 0.0 562
Msa1184730 MtrunA17_Chr7g0266491 34.694 196 119 3 101 296 137 323 6.21e-28 115
Msa1184730 MtrunA17_Chr2g0333241 34.545 165 101 2 131 295 100 257 9.74e-22 96.7
Msa1184730 MtrunA17_Chr4g0003161 33.939 165 102 2 131 295 100 257 2.87e-20 92.4
Msa1184730 MtrunA17_Chr4g0073891 32.178 202 113 6 100 289 396 585 3.37e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184730 AT2G45770.1 69.486 331 67 3 1 298 1 330 1.63e-154 440
Msa1184730 AT5G03940.1 36.869 198 116 3 101 298 147 335 3.13e-30 122
Msa1184730 AT1G15310.1 31.579 247 135 7 76 295 18 257 3.45e-23 101
Msa1184730 AT1G48900.2 35.152 165 100 3 131 295 100 257 1.03e-20 93.6
Msa1184730 AT1G48900.1 35.152 165 100 3 131 295 100 257 3.94e-20 92.4
Msa1184730 AT5G49500.1 31.138 167 106 3 131 295 100 259 8.06e-16 79.3
Msa1184730 AT4G30600.2 32.178 202 113 6 100 289 399 588 4.88e-14 74.3
Msa1184730 AT4G30600.1 32.178 202 113 6 100 289 399 588 4.88e-14 74.3
Msa1184730 AT5G49500.2 32.143 140 88 2 156 295 5 137 1.05e-13 72.4

Find 103 sgRNAs with CRISPR-Local

Find 560 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGAGCTTCTTCTTTAT+TGG 0.152429 8_1:-20858073 Msa1184730:CDS
CTCTTCCATTAGCCTGTAAT+TGG 0.202802 8_1:+20853672 None:intergenic
GGATAGGTTGTGGGTGTAAC+TGG 0.242046 8_1:-20851919 Msa1184730:intron
AACACCAACTATCATTATTA+TGG 0.243858 8_1:+20855668 None:intergenic
GGAGAGGTTGTTACGAGTTT+TGG 0.257972 8_1:+20858100 None:intergenic
TGCTTTGTGGTTGGCAGTTT+CGG 0.271943 8_1:-20849761 Msa1184730:CDS
GCAGGAGATCTTACTGGTTC+TGG 0.276643 8_1:-20852523 Msa1184730:intron
AGAGTTAATTTCTTGTAAAA+AGG 0.283124 8_1:-20853653 Msa1184730:CDS
CAGGTTTACACACCAATTAC+AGG 0.291032 8_1:-20853684 Msa1184730:CDS
ATGAAGGTTTCACGAATCTT+AGG 0.319697 8_1:-20849487 Msa1184730:three_prime_UTR
TGCTCCGCCGCCGGTGAAAC+TGG 0.319936 8_1:-20858197 Msa1184730:CDS
AGCACTGAAGAAGAATGTTT+TGG 0.320378 8_1:-20855851 Msa1184730:CDS
ATTTGTACCTGCTGATGCTT+TGG 0.322384 8_1:+20854001 None:intergenic
AATCAGTTATTGACAAATAA+TGG 0.324082 8_1:+20849626 None:intergenic
CTAGTGATCAGCTAGAAATA+TGG 0.333355 8_1:-20854070 Msa1184730:CDS
ATAATGATAGTTGGTGTTAA+TGG 0.346944 8_1:-20855663 Msa1184730:CDS
AAGATGAGGAATTGTGGTTT+TGG 0.349517 8_1:+20858269 None:intergenic
CTGAACTTCAACTTGGATAT+AGG 0.353693 8_1:-20855801 Msa1184730:intron
ATGCTTGCAGGAGATCTTAC+TGG 0.362667 8_1:-20852529 Msa1184730:intron
CGAAGCTATTCTTGCTTTGA+AGG 0.363135 8_1:-20849811 Msa1184730:CDS
ATGGGGTTTATTTCCACTCT+TGG 0.377556 8_1:-20849724 Msa1184730:three_prime_UTR
CTGGTTCTGGATGGAACTAC+TGG 0.380978 8_1:-20852510 Msa1184730:CDS
ATTTACTTCATTGAATTCTC+TGG 0.387565 8_1:+20852467 None:intergenic
TGGTGGGAAGACAACATCTT+TGG 0.387855 8_1:-20855640 Msa1184730:CDS
TGCTTTGAAGGCAGGTCAGC+TGG 0.401881 8_1:-20849799 Msa1184730:CDS
TTTGTCTTGGGATAGGTTGT+GGG 0.416511 8_1:-20851928 Msa1184730:intron
GCTCAAGCACACAGCAGAAA+TGG 0.420264 8_1:-20858333 Msa1184730:exon
GAAATATGGGCTGAAAGGAC+TGG 0.422519 8_1:-20854056 Msa1184730:CDS
ACACACCAATTACAGGCTAA+TGG 0.426484 8_1:-20853677 Msa1184730:CDS
CCTCTGCGTCGAAGGGTTGA+AGG 0.439412 8_1:+20851101 None:intergenic
GGGTTTGGTTTGAAATGGGG+AGG 0.443567 8_1:+20858244 None:intergenic
CCAACTATCATTATTATGGC+TGG 0.448862 8_1:+20855672 None:intergenic
GCTATTCTTGCTTTGAAGGC+AGG 0.450273 8_1:-20849807 Msa1184730:CDS
TAACCCCTTTGCATGCTTTG+TGG 0.450371 8_1:-20849774 Msa1184730:CDS
GGTGGGAAGACAACATCTTT+GGG 0.465463 8_1:-20855639 Msa1184730:intron
GACAAAGGCCTCTGCGTCGA+AGG 0.465528 8_1:+20851093 None:intergenic
AAAATTCTACCAGATATTGT+TGG 0.466991 8_1:-20854120 Msa1184730:intron
GAACATGAAGAGTGAACATA+TGG 0.467626 8_1:-20849650 Msa1184730:three_prime_UTR
TCGGACAATTAGACAATGAT+GGG 0.474721 8_1:-20849742 Msa1184730:exon
TTCGGACAATTAGACAATGA+TGG 0.480145 8_1:-20849743 Msa1184730:exon
GGCGGCGGAGCATGTGAAAC+GGG 0.482249 8_1:+20858208 None:intergenic
CCCTTTGCATGCTTTGTGGT+TGG 0.482595 8_1:-20849770 Msa1184730:CDS
GTGAAACGGGTTCGAGATGA+GGG 0.485870 8_1:+20858221 None:intergenic
GCTGTTGCTAAAGTAGTTGC+TGG 0.491147 8_1:-20853631 Msa1184730:CDS
AGCTAGAAATATGGGCTGAA+AGG 0.492518 8_1:-20854061 Msa1184730:CDS
CCAACCACAAAGCATGCAAA+GGG 0.493705 8_1:+20849770 None:intergenic
GAAGCTTGGCCTCTCAAGAA+TGG 0.496969 8_1:+20849862 None:intergenic
CGGCCGGTTACTAAAAGAAA+AGG 0.498498 8_1:-20858159 Msa1184730:CDS
CTTTCTTCAACTTCTCAATG+AGG 0.499357 8_1:-20849586 Msa1184730:three_prime_UTR
CACGAGAGTATTGCTCATGA+AGG 0.500691 8_1:-20849503 Msa1184730:three_prime_UTR
TAGTGATCAGCTAGAAATAT+GGG 0.501137 8_1:-20854069 Msa1184730:CDS
ATTGTATTATGTGATACATC+TGG 0.501382 8_1:-20853795 Msa1184730:CDS
ATAGTTGGTGTTAATGGTGG+TGG 0.506081 8_1:-20855657 Msa1184730:CDS
TACCAGATATTGTTGGCAGC+TGG 0.506306 8_1:-20854113 Msa1184730:intron
CTCATTGAGAAGTTGAAGAA+AGG 0.512308 8_1:+20849587 None:intergenic
AAATATGGGCTGAAAGGACT+GGG 0.523298 8_1:-20854055 Msa1184730:CDS
CGTTTCACATGCTCCGCCGC+CGG 0.524530 8_1:-20858206 Msa1184730:CDS
CGGCGGCGGAGCATGTGAAA+CGG 0.530454 8_1:+20858207 None:intergenic
TGAAACGGGTTCGAGATGAG+GGG 0.538865 8_1:+20858222 None:intergenic
GAGAGGCCAAGCTTCGCAAA+AGG 0.540478 8_1:-20849854 Msa1184730:CDS
CTGGCTTATAGATTGAAGAA+TGG 0.541325 8_1:-20855361 Msa1184730:CDS
ATTGAAGAATGGAGGTGCTA+AGG 0.542507 8_1:-20855350 Msa1184730:intron
TGTGAATAGACCAGTTTCAC+CGG 0.543773 8_1:+20858187 None:intergenic
TCATTGAATTCTCTGGCTTG+TGG 0.544319 8_1:+20852474 None:intergenic
CCAGCCATAATAATGATAGT+TGG 0.548868 8_1:-20855672 Msa1184730:CDS
CGAATATGCAGAGCAACACT+AGG 0.550173 8_1:-20849916 Msa1184730:CDS
TAGACCAGTTTCACCGGCGG+CGG 0.551496 8_1:+20858193 None:intergenic
TTCAAGTTCAATGCCAAGAG+TGG 0.551912 8_1:+20849711 None:intergenic
GTCTATTCACAAAACTCGGC+CGG 0.553966 8_1:-20858175 Msa1184730:CDS
GAGAAATCCAAAGCATCAGC+AGG 0.562472 8_1:-20854008 Msa1184730:intron
AGTAAAACTGAACTTCAACT+TGG 0.564527 8_1:-20855808 Msa1184730:CDS
TGTGAAACGGGTTCGAGATG+AGG 0.574121 8_1:+20858220 None:intergenic
TCATTTAATCCATTCTTGAG+AGG 0.577181 8_1:-20849871 Msa1184730:CDS
TTTGGATTTGTTAAGCAACA+AGG 0.578155 8_1:-20855833 Msa1184730:CDS
AAGCTGGATGGTTCTGCAAG+AGG 0.579304 8_1:-20851883 Msa1184730:CDS
TCTTGCAGAACCATCCAGCT+TGG 0.585467 8_1:+20851885 None:intergenic
AAGAAGAAGCTCATCAATGA+CGG 0.586886 8_1:+20858079 None:intergenic
GCCAACCACAAAGCATGCAA+AGG 0.588604 8_1:+20849769 None:intergenic
TTGGATTTGTTAAGCAACAA+GGG 0.588870 8_1:-20855832 Msa1184730:CDS
ACAAAGGCCTCTGCGTCGAA+GGG 0.589464 8_1:+20851094 None:intergenic
GAAATGGGGAGGTGAAGATG+AGG 0.589668 8_1:+20858255 None:intergenic
GAGATCTTACTGGTTCTGGA+TGG 0.592324 8_1:-20852519 Msa1184730:CDS
GCAGAGCAACACTAGGTCAC+AGG 0.594813 8_1:-20849909 Msa1184730:CDS
GAAACGGGTTCGAGATGAGG+GGG 0.597458 8_1:+20858223 None:intergenic
AGTTCTTGATGAACTCGAAG+AGG 0.599876 8_1:-20858030 Msa1184730:intron
AAGGTTTCACGAATCTTAGG+TGG 0.602253 8_1:-20849484 Msa1184730:three_prime_UTR
ACTGGTCTATTCACAAAACT+CGG 0.602723 8_1:-20858179 Msa1184730:CDS
TGGATTTGTTAAGCAACAAG+GGG 0.614912 8_1:-20855831 Msa1184730:CDS
GAGGCGGGTGAATGAAGCAG+AGG 0.615384 8_1:+20858301 None:intergenic
GAGGTGAAGATGAGGAATTG+TGG 0.629913 8_1:+20858263 None:intergenic
CTGGATGGTTCTGCAAGAGG+TGG 0.633895 8_1:-20851880 Msa1184730:CDS
TAGTTGGTGTTAATGGTGGT+GGG 0.640615 8_1:-20855656 Msa1184730:CDS
AAACGGGTTCGAGATGAGGG+GGG 0.640952 8_1:+20858224 None:intergenic
TATTTCTAGCTGATCACTAG+CGG 0.649322 8_1:+20854073 None:intergenic
GCTTATAGATTGAAGAATGG+AGG 0.650080 8_1:-20855358 Msa1184730:CDS
ATGATAGTTGGTGTTAATGG+TGG 0.652803 8_1:-20855660 Msa1184730:CDS
CGGACAATTAGACAATGATG+GGG 0.654399 8_1:-20849741 Msa1184730:exon
GACTGGGTGTGAGATTGTTG+TGG 0.655858 8_1:-20854039 Msa1184730:CDS
TTCTGCAAGAGGTGGCTGTG+TGG 0.671813 8_1:-20851872 Msa1184730:intron
CCTTCAACCCTTCGACGCAG+AGG 0.682240 8_1:-20851101 Msa1184730:CDS
GAAGCTCATCAATGACGGAG+AGG 0.696076 8_1:+20858084 None:intergenic
GAATAGACCAGTTTCACCGG+CGG 0.703416 8_1:+20858190 None:intergenic
CAACCACAAAGCATGCAAAG+GGG 0.738803 8_1:+20849771 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAATAATATAATAATA+AGG + chr8_1:20853892-20853911 None:intergenic 0.0%
!! TATTATTATATTATTATATA+TGG - chr8_1:20853892-20853911 Msa1184730:intron 0.0%
!! AAAAAATAGTAATAATAGTT+TGG + chr8_1:20849821-20849840 None:intergenic 10.0%
!!! TATTATTATGACTTTTATAA+TGG + chr8_1:20850494-20850513 None:intergenic 10.0%
!! GTATTCATTATTTAAATAAA+AGG + chr8_1:20851321-20851340 None:intergenic 10.0%
!! CTTAGTAAAATAATATAATA+TGG + chr8_1:20851446-20851465 None:intergenic 10.0%
!! TTATAAATATTTGACTATAT+AGG - chr8_1:20851809-20851828 Msa1184730:intron 10.0%
!! TTATATTATTATATATGGTT+TGG - chr8_1:20853897-20853916 Msa1184730:intron 10.0%
!!! TTAATTGTTTTTCTATTTTT+GGG - chr8_1:20855565-20855584 Msa1184730:intron 10.0%
!!! ATCTCTTAAAATATTTTTTT+AGG - chr8_1:20855974-20855993 Msa1184730:intron 10.0%
!!! CTTAATTCAAATTATTTTTT+AGG - chr8_1:20856012-20856031 Msa1184730:intron 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr8_1:20856178-20856197 None:intergenic 10.0%
!!! ACAATCTTAATAGTAATTTT+CGG + chr8_1:20849902-20849921 None:intergenic 15.0%
!!! GATATTTTATGAACTTATAT+AGG - chr8_1:20850081-20850100 Msa1184730:intron 15.0%
!! ATTTAAATAATGAATACTAG+TGG - chr8_1:20851324-20851343 Msa1184730:intron 15.0%
!! CTATATAGGATATTTATTTA+TGG - chr8_1:20851823-20851842 Msa1184730:intron 15.0%
!!! TTCAATTTTTATGATATGAA+TGG - chr8_1:20851911-20851930 Msa1184730:CDS 15.0%
!! TTGAATTAAATTTCATTTAC+AGG - chr8_1:20852095-20852114 Msa1184730:intron 15.0%
!!! ATTGTTGATTCTATTATTTA+TGG - chr8_1:20852192-20852211 Msa1184730:intron 15.0%
!! ATAAAAAGACAAACAATAAA+TGG - chr8_1:20853066-20853085 Msa1184730:intron 15.0%
!! AAAACTTATAAAGTGATAAA+CGG + chr8_1:20853843-20853862 None:intergenic 15.0%
!!! TTATATTGTTATCTTCTTTT+TGG - chr8_1:20854345-20854364 Msa1184730:intron 15.0%
!! AGTATAATTTCATATTTGAT+AGG - chr8_1:20855077-20855096 Msa1184730:intron 15.0%
!! CAAAAATAGAAAAACAATTA+AGG + chr8_1:20855566-20855585 None:intergenic 15.0%
!!! CTTAATTGTTTTTCTATTTT+TGG - chr8_1:20855564-20855583 Msa1184730:intron 15.0%
!!! AATATTTTAAGAGATTATTG+AGG + chr8_1:20855969-20855988 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr8_1:20856500-20856519 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+CGG + chr8_1:20856149-20856168 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr8_1:20856309-20856328 Msa1184730:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr8_1:20856428-20856447 Msa1184730:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr8_1:20856500-20856519 Msa1184730:intron 15.0%
!! CTTGATAGAAATAAAAAATA+GGG + chr8_1:20856574-20856593 None:intergenic 15.0%
!!! CTATTTTTTATTTCTATCAA+GGG - chr8_1:20856573-20856592 Msa1184730:intron 15.0%
!!! TTGTTATTTTGTATATTTGA+GGG - chr8_1:20857165-20857184 Msa1184730:intron 15.0%
!!! ATTTGAGTAAATAATCATTT+TGG + chr8_1:20857223-20857242 None:intergenic 15.0%
!!! TTTACTCAAATAATTTGTTA+TGG - chr8_1:20857232-20857251 Msa1184730:intron 15.0%
!!! TAGTAATAAAGTATTTAGAT+TGG - chr8_1:20857414-20857433 Msa1184730:intron 15.0%
!!! AAGTATAGTTTAAAATAAGA+GGG - chr8_1:20857558-20857577 Msa1184730:intron 15.0%
!!! CTAAAATCTAAAACAAAAAA+TGG - chr8_1:20857721-20857740 Msa1184730:intron 15.0%
!!! TAATGTTCTTTGTTTATTAC+AGG - chr8_1:20849853-20849872 Msa1184730:CDS 20.0%
!! GAAAATTACTATTAAGATTG+TGG - chr8_1:20849901-20849920 Msa1184730:CDS 20.0%
!!! AATTAGTTTTTTTACACAGA+CGG - chr8_1:20849999-20850018 Msa1184730:intron 20.0%
!! CAATTTACAATCAATCATAA+CGG + chr8_1:20850339-20850358 None:intergenic 20.0%
!! TCAGCAAATATAATTGATAA+CGG + chr8_1:20850441-20850460 None:intergenic 20.0%
!!! ATAAAATTGGTTTGTTTGAT+TGG + chr8_1:20850777-20850796 None:intergenic 20.0%
!! TAATCATATTATAGGTATGA+AGG + chr8_1:20851251-20851270 None:intergenic 20.0%
!! AATAAAAGGATTACTTTCAA+AGG + chr8_1:20851307-20851326 None:intergenic 20.0%
!! AATATTTATAAAATGCAGGA+TGG + chr8_1:20851800-20851819 None:intergenic 20.0%
!! GTCAAATATTTATAAAATGC+AGG + chr8_1:20851804-20851823 None:intergenic 20.0%
!!! TTATTTATGGTTTTAAGTCT+TGG - chr8_1:20851836-20851855 Msa1184730:intron 20.0%
!!! TTTATGATATGAATGGTTTT+AGG - chr8_1:20851918-20851937 Msa1184730:intron 20.0%
!! AGTTAATAGATAATTGTCAA+AGG - chr8_1:20852331-20852350 Msa1184730:intron 20.0%
!! TTCTATATTGTTAATTGCTT+GGG + chr8_1:20852368-20852387 None:intergenic 20.0%
!! TTTCTATATTGTTAATTGCT+TGG + chr8_1:20852369-20852388 None:intergenic 20.0%
!! TAACGTATATTATGTAATTG+AGG - chr8_1:20852626-20852645 Msa1184730:intron 20.0%
!! ATAAAAGATATCCAATAATG+AGG + chr8_1:20852862-20852881 None:intergenic 20.0%
!!! GCTATTTCTTGTATAAATTT+AGG - chr8_1:20852922-20852941 Msa1184730:intron 20.0%
!! AAAAAATATCTTTAGATCCT+TGG - chr8_1:20852948-20852967 Msa1184730:intron 20.0%
!!! AAACTGTTTAAAATGAGATT+AGG - chr8_1:20853264-20853283 Msa1184730:intron 20.0%
!! TATTGTATACAATAAATGCA+TGG + chr8_1:20853292-20853311 None:intergenic 20.0%
!!! ATTTTAAATGTTTGTGTTGA+GGG + chr8_1:20853471-20853490 None:intergenic 20.0%
!!! AATTTTAAATGTTTGTGTTG+AGG + chr8_1:20853472-20853491 None:intergenic 20.0%
!!! ACGTAAGTACTAAAATTTTA+CGG - chr8_1:20854021-20854040 Msa1184730:CDS 20.0%
!! AGAGTTAATTTCTTGTAAAA+AGG - chr8_1:20854140-20854159 Msa1184730:intron 20.0%
!! ACAAGAAAATTATGATGTAA+AGG + chr8_1:20854269-20854288 None:intergenic 20.0%
!!! AACAAAAAAAGTCTTTAAAG+AGG + chr8_1:20854306-20854325 None:intergenic 20.0%
!! AGAAGATAACAATATAACTT+AGG + chr8_1:20854342-20854361 None:intergenic 20.0%
!! ATGAACAATTATTATGTGAT+GGG - chr8_1:20854420-20854439 Msa1184730:intron 20.0%
!!! AACACAATCTTTTTTTAATG+AGG - chr8_1:20854674-20854693 Msa1184730:intron 20.0%
!!! TGCATTGATTAATAGATAAA+TGG + chr8_1:20854815-20854834 None:intergenic 20.0%
!! CCTAAAATTGTATGAATTAA+CGG - chr8_1:20855234-20855253 Msa1184730:intron 20.0%
!! AAATAGAAAAACAATTAAGG+CGG + chr8_1:20855563-20855582 None:intergenic 20.0%
!! TATTTCGATATTTGGTATTA+TGG - chr8_1:20855790-20855809 Msa1184730:intron 20.0%
!!! TTTAGGGTTAATTATGTTTT+TGG - chr8_1:20856029-20856048 Msa1184730:intron 20.0%
!!! CTTTTTCAACAATTTTTTAC+AGG + chr8_1:20856398-20856417 None:intergenic 20.0%
!!! AATAGGGTTAATTATGTTTT+TGG + chr8_1:20856558-20856577 None:intergenic 20.0%
!! CCTTGATAGAAATAAAAAAT+AGG + chr8_1:20856575-20856594 None:intergenic 20.0%
!!! CCTATTTTTTATTTCTATCA+AGG - chr8_1:20856572-20856591 Msa1184730:intron 20.0%
!! ATTTATGGTTTACAGAAAAA+TGG + chr8_1:20856730-20856749 None:intergenic 20.0%
!!! TTTTTCTGTAAACCATAAAT+AGG - chr8_1:20856730-20856749 Msa1184730:intron 20.0%
!!! TTTTAGTCATTGAAATTGTA+AGG - chr8_1:20856906-20856925 Msa1184730:intron 20.0%
!! TTTAGTCATTGAAATTGTAA+GGG - chr8_1:20856907-20856926 Msa1184730:intron 20.0%
!!! AAATTGCTATTTCGTAAATT+TGG + chr8_1:20856950-20856969 None:intergenic 20.0%
!! AATTTACGAAATAGCAATTT+AGG - chr8_1:20856950-20856969 Msa1184730:intron 20.0%
!!! GATTGACATTCTTTAATTTA+AGG - chr8_1:20857136-20857155 Msa1184730:intron 20.0%
!!! GTTGTTATTTTGTATATTTG+AGG - chr8_1:20857164-20857183 Msa1184730:intron 20.0%
!!! ATAAACAAAACTTTTAGCAA+GGG + chr8_1:20857508-20857527 None:intergenic 20.0%
!!! TATAAACAAAACTTTTAGCA+AGG + chr8_1:20857509-20857528 None:intergenic 20.0%
!!! GAAGTATAGTTTAAAATAAG+AGG - chr8_1:20857557-20857576 Msa1184730:intron 20.0%
!!! AAAATGGATAATCACATTTT+TGG - chr8_1:20857737-20857756 Msa1184730:intron 20.0%
!!! AAATGGATAATCACATTTTT+GGG - chr8_1:20857738-20857757 Msa1184730:intron 20.0%
!! AATCTACTCTTACTATTATT+TGG - chr8_1:20857814-20857833 Msa1184730:intron 20.0%
!! AATCAGTTATTGACAAATAA+TGG + chr8_1:20858170-20858189 None:intergenic 20.0%
!! ATAGTTTGGAATTGAATAAG+AGG + chr8_1:20849807-20849826 None:intergenic 25.0%
!!! GCTTTATTAGTTTCTGATTT+TGG - chr8_1:20849875-20849894 Msa1184730:CDS 25.0%
!! ACCAAGTAGTAGATATTTTT+AGG - chr8_1:20850058-20850077 Msa1184730:intron 25.0%
!!! CCAAGTAGTAGATATTTTTA+GGG - chr8_1:20850059-20850078 Msa1184730:intron 25.0%
!!! AGTGTCACATACTTTTTTTT+TGG - chr8_1:20850372-20850391 Msa1184730:intron 25.0%
!!! TAAATGCTTTTGGAAACATT+TGG - chr8_1:20850831-20850850 Msa1184730:intron 25.0%
! GATCTGTTATCTTATACATA+AGG + chr8_1:20851026-20851045 None:intergenic 25.0%
! ATGACAGTGAATAAACTATT+AGG - chr8_1:20851070-20851089 Msa1184730:intron 25.0%
! GTATGAAGAAAATTTGATAG+AGG - chr8_1:20851177-20851196 Msa1184730:intron 25.0%
!! TGTATCGGTAATCATATTAT+AGG + chr8_1:20851259-20851278 None:intergenic 25.0%
! ATGATTACCGATACAAATAT+TGG - chr8_1:20851264-20851283 Msa1184730:intron 25.0%
! TGCTTAACCAATATTTGTAT+CGG + chr8_1:20851274-20851293 None:intergenic 25.0%
!!! TTTGTTTTAGACAAGTAGTT+TGG - chr8_1:20851509-20851528 Msa1184730:intron 25.0%
! TTCCTATTTGATAAATGCAA+GGG + chr8_1:20851890-20851909 None:intergenic 25.0%
! ATTCCTATTTGATAAATGCA+AGG + chr8_1:20851891-20851910 None:intergenic 25.0%
! AACACCAACTATCATTATTA+TGG + chr8_1:20852128-20852147 None:intergenic 25.0%
!!! ATAATGATAGTTGGTGTTAA+TGG - chr8_1:20852130-20852149 Msa1184730:intron 25.0%
! ATTCTATTATTTATGGAGCA+AGG - chr8_1:20852199-20852218 Msa1184730:intron 25.0%
! AACTTAAAGAAAATCTTTCC+AGG + chr8_1:20852269-20852288 None:intergenic 25.0%
! GAACAAACCAAAATGTTTAA+AGG - chr8_1:20852292-20852311 Msa1184730:intron 25.0%
!! TGTAACACCTTTAAACATTT+TGG + chr8_1:20852302-20852321 None:intergenic 25.0%
!!! TTATCAAATCAGTTTGGTTT+TGG + chr8_1:20852393-20852412 None:intergenic 25.0%
! AAAAGCTTATCAAATCAGTT+TGG + chr8_1:20852399-20852418 None:intergenic 25.0%
!! TTATACAGTGAGTTTTTCTT+TGG - chr8_1:20852471-20852490 Msa1184730:intron 25.0%
! TAGATTACTTTATACCTAAC+AGG + chr8_1:20852680-20852699 None:intergenic 25.0%
! AGGTATAAAGTAATCTACTT+AGG - chr8_1:20852683-20852702 Msa1184730:intron 25.0%
! TATACTCAAATGAGAAAAGA+GGG - chr8_1:20852980-20852999 Msa1184730:intron 25.0%
!!! CAAACAATAAATGGTTTTAC+AGG - chr8_1:20853075-20853094 Msa1184730:intron 25.0%
!!! AAATGGTTTTACAGGAAAAT+TGG - chr8_1:20853083-20853102 Msa1184730:intron 25.0%
! AGTATAAAACATATACACTG+GGG + chr8_1:20853497-20853516 None:intergenic 25.0%
! CAGTATAAAACATATACACT+GGG + chr8_1:20853498-20853517 None:intergenic 25.0%
! ACAGTATAAAACATATACAC+TGG + chr8_1:20853499-20853518 None:intergenic 25.0%
! TTCTTTCTTATATCCAATTG+AGG - chr8_1:20853550-20853569 Msa1184730:intron 25.0%
! ATACTAAAAATCACCTCAAT+TGG + chr8_1:20853566-20853585 None:intergenic 25.0%
! AAAATTCTACCAGATATTGT+TGG - chr8_1:20853673-20853692 Msa1184730:CDS 25.0%
! ATTGTATTATGTGATACATC+TGG - chr8_1:20853998-20854017 Msa1184730:intron 25.0%
!!! CTGTTTTGAACTTTAATACT+TGG - chr8_1:20854048-20854067 Msa1184730:CDS 25.0%
!!! TTATCTTCTTTTTGGTTTTC+TGG - chr8_1:20854353-20854372 Msa1184730:intron 25.0%
!!! TGGAAATTTTTTGAGTAGTA+AGG - chr8_1:20854373-20854392 Msa1184730:intron 25.0%
!! TAAGGTTTTTGACATTTATG+TGG - chr8_1:20854391-20854410 Msa1184730:intron 25.0%
! GATGAACAATTATTATGTGA+TGG - chr8_1:20854419-20854438 Msa1184730:intron 25.0%
! TGAACAATTATTATGTGATG+GGG - chr8_1:20854421-20854440 Msa1184730:intron 25.0%
! TCTTTATTCTTCAAACAAAG+TGG - chr8_1:20854523-20854542 Msa1184730:intron 25.0%
! CTTTATTCTTCAAACAAAGT+GGG - chr8_1:20854524-20854543 Msa1184730:intron 25.0%
! TATATCTTCAAACATGACAT+TGG - chr8_1:20854552-20854571 Msa1184730:intron 25.0%
! ATATAAGTAACCAATTCTGA+AGG + chr8_1:20854584-20854603 None:intergenic 25.0%
! AAGATACAAAAAAGATGCTA+GGG + chr8_1:20855055-20855074 None:intergenic 25.0%
! AAAGATACAAAAAAGATGCT+AGG + chr8_1:20855056-20855075 None:intergenic 25.0%
!! CCGTTAATTCATACAATTTT+AGG + chr8_1:20855237-20855256 None:intergenic 25.0%
! ATTTACTTCATTGAATTCTC+TGG + chr8_1:20855329-20855348 None:intergenic 25.0%
! AAAATAACAAATTTCCCAAC+AGG + chr8_1:20855389-20855408 None:intergenic 25.0%
! GCATAATATTATTTCAGTAG+AGG - chr8_1:20855587-20855606 Msa1184730:intron 25.0%
!! ATAACACTCACTCTTTTATT+GGG + chr8_1:20855733-20855752 None:intergenic 25.0%
!! TATAACACTCACTCTTTTAT+TGG + chr8_1:20855734-20855753 None:intergenic 25.0%
!!! ATGAAGTTTCTTTTTTGTCT+TGG - chr8_1:20855852-20855871 Msa1184730:CDS 25.0%
!!! TGAAGTTTCTTTTTTGTCTT+GGG - chr8_1:20855853-20855872 Msa1184730:CDS 25.0%
!!! TTTTGCGATATTTTTTACGA+AGG - chr8_1:20856347-20856366 Msa1184730:intron 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr8_1:20856374-20856393 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr8_1:20856439-20856458 Msa1184730:intron 25.0%
!!! TGAGTGTAGAAATTTTTTGT+AGG - chr8_1:20856470-20856489 Msa1184730:intron 25.0%
!!! GAGTGTAGAAATTTTTTGTA+GGG - chr8_1:20856471-20856490 Msa1184730:intron 25.0%
!!! TTTTATTTCTATCAAGGGTA+AGG - chr8_1:20856578-20856597 Msa1184730:intron 25.0%
! AATAAGATGCTAATTACTGT+TGG - chr8_1:20856601-20856620 Msa1184730:intron 25.0%
!! ATTTAGCACAACAATTTTAC+TGG - chr8_1:20857005-20857024 Msa1184730:intron 25.0%
!!! TTCAATATGCAAGTTTTGAT+AGG - chr8_1:20857065-20857084 Msa1184730:intron 25.0%
! TTGATGAATGTTTACTAAAG+AGG - chr8_1:20857090-20857109 Msa1184730:intron 25.0%
! TGAATTGATACTGTCTATTA+TGG - chr8_1:20857300-20857319 Msa1184730:intron 25.0%
! GAATTGATACTGTCTATTAT+GGG - chr8_1:20857301-20857320 Msa1184730:intron 25.0%
! ACTAAGTTTAAGAACTTCAA+AGG + chr8_1:20857398-20857417 None:intergenic 25.0%
!!! ATTAAAAATGTTCTAGAGAG+AGG - chr8_1:20857448-20857467 Msa1184730:intron 25.0%
! AAACTAGAGATCAATTTAAG+AGG + chr8_1:20857609-20857628 None:intergenic 25.0%
! AAACTACACTTTCTTTATCT+GGG + chr8_1:20857698-20857717 None:intergenic 25.0%
! TAAACTACACTTTCTTTATC+TGG + chr8_1:20857699-20857718 None:intergenic 25.0%
!! TTACTATTATTTGGTTTACC+AGG - chr8_1:20857823-20857842 Msa1184730:intron 25.0%
!!! TTTCATTGTTTTTGTCATCT+CGG - chr8_1:20858235-20858254 Msa1184730:CDS 25.0%
!!! TCTTCTTTCTTTTAGTTCAG+TGG - chr8_1:20849427-20849446 Msa1184730:three_prime_UTR 30.0%
! TTGCCTTTTCTTTTAGTAAC+CGG + chr8_1:20849640-20849659 None:intergenic 30.0%
TTGATGAGCTTCTTCTTTAT+TGG - chr8_1:20849720-20849739 Msa1184730:three_prime_UTR 30.0%
TTAAGAGAGGATATTCTTTC+TGG - chr8_1:20849929-20849948 Msa1184730:CDS 30.0%
TAAGAGAGGATATTCTTTCT+GGG - chr8_1:20849930-20849949 Msa1184730:CDS 30.0%
TAAATCAGGGAGTGAAATAA+AGG - chr8_1:20849958-20849977 Msa1184730:intron 30.0%
CCCTAAAAATATCTACTACT+TGG + chr8_1:20850062-20850081 None:intergenic 30.0%
TGTGAAATTTCTTACATGCA+TGG + chr8_1:20850203-20850222 None:intergenic 30.0%
TGCATGTAAGAAATTTCACA+TGG - chr8_1:20850203-20850222 Msa1184730:intron 30.0%
GTCAAATGTTTCAAATGACA+TGG - chr8_1:20850313-20850332 Msa1184730:intron 30.0%
CTGTATAGAAATGTGATTTG+TGG - chr8_1:20850559-20850578 Msa1184730:intron 30.0%
!! TTACAAAGTTGTTGACTTCT+TGG + chr8_1:20850624-20850643 None:intergenic 30.0%
TTGACAGCATCTCATAAAAT+TGG + chr8_1:20850790-20850809 None:intergenic 30.0%
!! ATGTTTCCAAAAGCATTTAC+AGG + chr8_1:20850830-20850849 None:intergenic 30.0%
TCATACACAAAAACTCAAGT+TGG + chr8_1:20851163-20851182 None:intergenic 30.0%
! ATGGATACCGAAAAATGTTT+TGG - chr8_1:20851367-20851386 Msa1184730:intron 30.0%
! ACTTCTAAGGAATTGTTTCT+CGG + chr8_1:20851393-20851412 None:intergenic 30.0%
TTTCTAACATTCTCATGTTG+TGG + chr8_1:20851556-20851575 None:intergenic 30.0%
!!! TATGGTTTTAAGTCTTGGTA+TGG - chr8_1:20851841-20851860 Msa1184730:intron 30.0%
TATTTGATAAATGCAAGGGA+CGG + chr8_1:20851886-20851905 None:intergenic 30.0%
!! TTTGGATTTGTTAAGCAACA+AGG - chr8_1:20851960-20851979 Msa1184730:intron 30.0%
!! TTGGATTTGTTAAGCAACAA+GGG - chr8_1:20851961-20851980 Msa1184730:intron 30.0%
AGTAAAACTGAACTTCAACT+TGG - chr8_1:20851985-20852004 Msa1184730:intron 30.0%
TATATTGTTAATTGCTTGGG+AGG + chr8_1:20852365-20852384 None:intergenic 30.0%
ATCTAGATTGTTAAACTAGC+TGG - chr8_1:20852569-20852588 Msa1184730:intron 30.0%
!!! CAACTTTTGGCTTTAGTTTA+GGG - chr8_1:20852773-20852792 Msa1184730:intron 30.0%
! TTTTATGACTCTACTTGTAG+AGG - chr8_1:20852876-20852895 Msa1184730:intron 30.0%
!! GAGGATATTTTTGTCTCATT+TGG - chr8_1:20852895-20852914 Msa1184730:intron 30.0%
CTATACTCAAATGAGAAAAG+AGG - chr8_1:20852979-20852998 Msa1184730:intron 30.0%
GTTTGAAAATTCAAGCTATG+CGG + chr8_1:20853248-20853267 None:intergenic 30.0%
TTTGTGTAGTTCAAAACACA+CGG - chr8_1:20853397-20853416 Msa1184730:intron 30.0%
GGATATAAGAAAGAATCTTG+AGG + chr8_1:20853545-20853564 None:intergenic 30.0%
AAGATCATATCACATTGTCT+TGG - chr8_1:20853588-20853607 Msa1184730:intron 30.0%
! CAATATCTGGTAGAATTTTG+AGG + chr8_1:20853672-20853691 None:intergenic 30.0%
TAGTGATCAGCTAGAAATAT+GGG - chr8_1:20853724-20853743 Msa1184730:intron 30.0%
TTTGAACTTTAATACTTGGC+AGG - chr8_1:20854052-20854071 Msa1184730:CDS 30.0%
CTTATATCTTAACTCCATGT+AGG - chr8_1:20854597-20854616 Msa1184730:intron 30.0%
TTAGAACTAGCTGAAATTCT+AGG - chr8_1:20854698-20854717 Msa1184730:intron 30.0%
! ATTACAGTGTTTTCTGATGA+TGG - chr8_1:20854734-20854753 Msa1184730:intron 30.0%
! TTACAGTGTTTTCTGATGAT+GGG - chr8_1:20854735-20854754 Msa1184730:intron 30.0%
CTCTTTCAACTGAATTACAT+AGG - chr8_1:20854916-20854935 Msa1184730:intron 30.0%
AAAGACACAAATATGATCCA+TGG + chr8_1:20855032-20855051 None:intergenic 30.0%
!!! TGTGTTTTAAGAGTATGTGA+TGG - chr8_1:20855153-20855172 Msa1184730:intron 30.0%
AGAGATAAAAAAGATGCTCA+GGG + chr8_1:20855190-20855209 None:intergenic 30.0%
CACCATATGAAAATACCATT+TGG - chr8_1:20855436-20855455 Msa1184730:intron 30.0%
! TGCCAAATGGTATTTTCATA+TGG + chr8_1:20855441-20855460 None:intergenic 30.0%
TTATCGGGTAAAATCCATAT+TGG - chr8_1:20855651-20855670 Msa1184730:CDS 30.0%
TTATTGGGTGAAATCAATGT+GGG + chr8_1:20855718-20855737 None:intergenic 30.0%
TTTATTGGGTGAAATCAATG+TGG + chr8_1:20855719-20855738 None:intergenic 30.0%
CTCTTCTCTATTTCGATATT+TGG - chr8_1:20855782-20855801 Msa1184730:intron 30.0%
AAAGCTAATATGAAACTGCA+AGG + chr8_1:20855819-20855838 None:intergenic 30.0%
!!! TTTCTTTTTTGTCTTGGGAT+AGG - chr8_1:20855858-20855877 Msa1184730:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr8_1:20856515-20856534 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG - chr8_1:20856212-20856231 Msa1184730:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr8_1:20856515-20856534 Msa1184730:intron 30.0%
! CAACACCAACAAATTTTACA+GGG + chr8_1:20856656-20856675 None:intergenic 30.0%
TGTAAACCATAAATAGGCTT+TGG - chr8_1:20856736-20856755 Msa1184730:intron 30.0%
TACATACCAAAGCCTATTTA+TGG + chr8_1:20856745-20856764 None:intergenic 30.0%
AATTCAGACTTCAATGTGAA+AGG + chr8_1:20856791-20856810 None:intergenic 30.0%
TGAACTAAGAATTCAGACAA+GGG + chr8_1:20856857-20856876 None:intergenic 30.0%
ATGAACTAAGAATTCAGACA+AGG + chr8_1:20856858-20856877 None:intergenic 30.0%
TCATTGAAATTGTAAGGGAT+TGG - chr8_1:20856912-20856931 Msa1184730:intron 30.0%
!!! TGTTTACTAAAGAGGCATTT+TGG - chr8_1:20857098-20857117 Msa1184730:intron 30.0%
TGAAAGTGAACAGCAAATTT+AGG - chr8_1:20857329-20857348 Msa1184730:intron 30.0%
!! GTTTTGTTAGGAGTTGTTTA+TGG - chr8_1:20857475-20857494 Msa1184730:intron 30.0%
AATAAGAGGGAAAAACTCAT+TGG - chr8_1:20857571-20857590 Msa1184730:intron 30.0%
TAGAGATCAATTTAAGAGGA+CGG + chr8_1:20857605-20857624 None:intergenic 30.0%
!!! TTCCTCATTATTTTGGTGTT+AGG + chr8_1:20857652-20857671 None:intergenic 30.0%
! TTGCACTTTCCTCATTATTT+TGG + chr8_1:20857659-20857678 None:intergenic 30.0%
CAAAGGAAAAATCAAGGTTA+AGG + chr8_1:20857776-20857795 None:intergenic 30.0%
! ATTTTTCCTTTGTTGCACAT+TGG - chr8_1:20857784-20857803 Msa1184730:intron 30.0%
TCATTTAATCCATTCTTGAG+AGG - chr8_1:20857922-20857941 Msa1184730:intron 30.0%
! AAAAGGTGAACATGATTTTG+AGG - chr8_1:20857956-20857975 Msa1184730:intron 30.0%
! AAAGGTGAACATGATTTTGA+GGG - chr8_1:20857957-20857976 Msa1184730:intron 30.0%
! CATTGAACTTGAAGATTTTG+TGG - chr8_1:20858092-20858111 Msa1184730:CDS 30.0%
!!! TTCATTGTTTTTGTCATCTC+GGG - chr8_1:20858236-20858255 Msa1184730:CDS 30.0%
! CCACTAATCGTCATATTTTT+GGG + chr8_1:20858357-20858376 None:intergenic 30.0%
! ACCACTAATCGTCATATTTT+TGG + chr8_1:20858358-20858377 None:intergenic 30.0%
! AAGATGAGGAATTGTGGTTT+TGG + chr8_1:20849527-20849546 None:intergenic 35.0%
! ACTGGTCTATTCACAAAACT+CGG - chr8_1:20849614-20849633 Msa1184730:three_prime_UTR 35.0%
GATGTAGAAAAACTCTTCTC+TGG - chr8_1:20849665-20849684 Msa1184730:three_prime_UTR 35.0%
AAGAAGAAGCTCATCAATGA+CGG + chr8_1:20849717-20849736 None:intergenic 35.0%
GATTGTGGAGAATTTAAGAG+AGG - chr8_1:20849916-20849935 Msa1184730:CDS 35.0%
! TTTCTGGGAAGCTTAAATCA+GGG - chr8_1:20849945-20849964 Msa1184730:CDS 35.0%
ACAACTTTGTAATGAGCACT+AGG - chr8_1:20850632-20850651 Msa1184730:intron 35.0%
!!! TTTTTTTCCTTCAACCGATG+CGG - chr8_1:20850681-20850700 Msa1184730:intron 35.0%
!!! TTTGATTGGCCTCTTTTGTT+TGG + chr8_1:20850763-20850782 None:intergenic 35.0%
! GCTATTCCTGTAAATGCTTT+TGG - chr8_1:20850821-20850840 Msa1184730:intron 35.0%
GTCTAGCTAAATGGGATAAT+GGG + chr8_1:20850859-20850878 None:intergenic 35.0%
TACTTTCAGAAATTGTAGCC+AGG + chr8_1:20850900-20850919 None:intergenic 35.0%
! GGCTACAATTTCTGAAAGTA+TGG - chr8_1:20850900-20850919 Msa1184730:intron 35.0%
! TATTCACTGTCATTTCGAAG+TGG + chr8_1:20851063-20851082 None:intergenic 35.0%
!! GAATCTCTAACCACTTTTCT+CGG + chr8_1:20851141-20851160 None:intergenic 35.0%
AAGGTGACTAATCTCAATCA+GGG + chr8_1:20851232-20851251 None:intergenic 35.0%
! TTCTCGGCCAAAACATTTTT+CGG + chr8_1:20851377-20851396 None:intergenic 35.0%
CATGTGTCTTCTAACTTCTA+AGG + chr8_1:20851406-20851425 None:intergenic 35.0%
GAAAGATGCTCTTACATGAA+AGG - chr8_1:20851572-20851591 Msa1184730:intron 35.0%
GTCCCTTGCATTTATCAAAT+AGG - chr8_1:20851885-20851904 Msa1184730:CDS 35.0%
!! AGCACTGAAGAAGAATGTTT+TGG - chr8_1:20851942-20851961 Msa1184730:intron 35.0%
!! TGGATTTGTTAAGCAACAAG+GGG - chr8_1:20851962-20851981 Msa1184730:intron 35.0%
CTGAACTTCAACTTGGATAT+AGG - chr8_1:20851992-20852011 Msa1184730:intron 35.0%
CCAACTATCATTATTATGGC+TGG + chr8_1:20852124-20852143 None:intergenic 35.0%
CCAGCCATAATAATGATAGT+TGG - chr8_1:20852121-20852140 Msa1184730:intron 35.0%
!! ATGATAGTTGGTGTTAATGG+TGG - chr8_1:20852133-20852152 Msa1184730:intron 35.0%
AAAATCTTTCCAGGTACGTA+AGG + chr8_1:20852260-20852279 None:intergenic 35.0%
! TTTGATAAGCTTTTCCTTGC+AGG - chr8_1:20852405-20852424 Msa1184730:intron 35.0%
CTGGCTTATAGATTGAAGAA+TGG - chr8_1:20852432-20852451 Msa1184730:intron 35.0%
GCTTATAGATTGAAGAATGG+AGG - chr8_1:20852435-20852454 Msa1184730:intron 35.0%
ATCTACACCAAAAAGTTCGA+TGG - chr8_1:20852506-20852525 Msa1184730:CDS 35.0%
! GATATCACCATCGAACTTTT+TGG + chr8_1:20852516-20852535 None:intergenic 35.0%
TTTCCTACTCAGCTTTCTAA+AGG - chr8_1:20852593-20852612 Msa1184730:intron 35.0%
AATTATCTCCCATTTCTACC+TGG - chr8_1:20852741-20852760 Msa1184730:intron 35.0%
!!! GCAACTTTTGGCTTTAGTTT+AGG - chr8_1:20852772-20852791 Msa1184730:intron 35.0%
!!! TCAGCCAACTGTTGTTTTAA+CGG - chr8_1:20852797-20852816 Msa1184730:intron 35.0%
AACACCGTTAAAACAACAGT+TGG + chr8_1:20852804-20852823 None:intergenic 35.0%
AGATATCCAATAATGAGGCA+GGG + chr8_1:20852857-20852876 None:intergenic 35.0%
AAGATATCCAATAATGAGGC+AGG + chr8_1:20852858-20852877 None:intergenic 35.0%
ATGAGAAAAGAGGGTCAAAT+AGG - chr8_1:20852989-20853008 Msa1184730:intron 35.0%
AGGAGAGAATCCAATCAAAA+TGG - chr8_1:20853009-20853028 Msa1184730:intron 35.0%
GGAGAGAATCCAATCAAAAT+GGG - chr8_1:20853010-20853029 Msa1184730:intron 35.0%
GAGGAAGAGTAACAACAATT+AGG - chr8_1:20853034-20853053 Msa1184730:intron 35.0%
TCAAAGATGCAACAGAGATT+TGG + chr8_1:20853192-20853211 None:intergenic 35.0%
AATCTCTGTTGCATCTTTGA+AGG - chr8_1:20853192-20853211 Msa1184730:intron 35.0%
AAAATTCAAGCTATGCGGAA+GGG + chr8_1:20853243-20853262 None:intergenic 35.0%
TTGCGTCATATCTTGTAAAC+AGG - chr8_1:20853315-20853334 Msa1184730:intron 35.0%
TGCGTCATATCTTGTAAACA+GGG - chr8_1:20853316-20853335 Msa1184730:intron 35.0%
TCATATCTTGTAAACAGGGA+TGG - chr8_1:20853320-20853339 Msa1184730:intron 35.0%
!! GTGTGTTTTGAACTACACAA+AGG + chr8_1:20853398-20853417 None:intergenic 35.0%
!! TATTTCTAGCTGATCACTAG+CGG + chr8_1:20853723-20853742 None:intergenic 35.0%
CTAGTGATCAGCTAGAAATA+TGG - chr8_1:20853723-20853742 Msa1184730:intron 35.0%
CTTATAAAGTGATAAACGGC+AGG + chr8_1:20853839-20853858 None:intergenic 35.0%
CTTTCACAAGCTGTAAAAAG+AGG - chr8_1:20853956-20853975 Msa1184730:intron 35.0%
GTAAAAAGAGGAAAAGAGCT+AGG - chr8_1:20853968-20853987 Msa1184730:intron 35.0%
GGCAGGTTGTATATTAGTAT+TGG - chr8_1:20854069-20854088 Msa1184730:CDS 35.0%
GGTGTTCATGTTATATTCTC+AGG - chr8_1:20854090-20854109 Msa1184730:CDS 35.0%
! AAAAGTCTTTAAAGAGGCAG+TGG + chr8_1:20854300-20854319 None:intergenic 35.0%
ACAAGACATGAAAACCTACA+TGG + chr8_1:20854614-20854633 None:intergenic 35.0%
TCTTGTGAATTTCACAGCAA+TGG - chr8_1:20854628-20854647 Msa1184730:intron 35.0%
ATCCTCATACACTACAAGTA+GGG + chr8_1:20854840-20854859 None:intergenic 35.0%
TATCCTCATACACTACAAGT+AGG + chr8_1:20854841-20854860 None:intergenic 35.0%
GTCATTTGTTTCATTCACCT+TGG - chr8_1:20854940-20854959 Msa1184730:intron 35.0%
TGTTGCAGCGAACTTTATTA+TGG - chr8_1:20854991-20855010 Msa1184730:intron 35.0%
TACATCAACAAGCCAACTTA+CGG + chr8_1:20855133-20855152 None:intergenic 35.0%
GAGAGATAAAAAAGATGCTC+AGG + chr8_1:20855191-20855210 None:intergenic 35.0%
CAACAGGAAGAAGATAAACA+CGG + chr8_1:20855373-20855392 None:intergenic 35.0%
GTGTTTATCTTCTTCCTGTT+GGG - chr8_1:20855372-20855391 Msa1184730:intron 35.0%
GAAGAAAAGTGAATGCCAAA+TGG + chr8_1:20855454-20855473 None:intergenic 35.0%
!! TGGCATTCACTTTTCTTCTT+TGG - chr8_1:20855456-20855475 Msa1184730:intron 35.0%
!! GGCATTCACTTTTCTTCTTT+GGG - chr8_1:20855457-20855476 Msa1184730:intron 35.0%
!! TATTTCAGTAGAGGAGTACT+AGG - chr8_1:20855596-20855615 Msa1184730:intron 35.0%
! CACTCTCTCTACTCTTTTAT+CGG - chr8_1:20855635-20855654 Msa1184730:intron 35.0%
! ACTCTCTCTACTCTTTTATC+GGG - chr8_1:20855636-20855655 Msa1184730:intron 35.0%
!! TGGTTTAATTTTGACCAAGC+TGG - chr8_1:20855894-20855913 Msa1184730:intron 35.0%
!! TTAATTTTGACCAAGCTGGA+TGG - chr8_1:20855898-20855917 Msa1184730:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr8_1:20856531-20856550 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr8_1:20856530-20856549 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr8_1:20856530-20856549 Msa1184730:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr8_1:20856531-20856550 Msa1184730:intron 35.0%
GGAATCCCTGTAAAATTTGT+TGG - chr8_1:20856648-20856667 Msa1184730:intron 35.0%
! CCAACACCAACAAATTTTAC+AGG + chr8_1:20856657-20856676 None:intergenic 35.0%
!! CCTGTAAAATTTGTTGGTGT+TGG - chr8_1:20856654-20856673 Msa1184730:intron 35.0%
!! AAATTTGTTGGTGTTGGTGA+AGG - chr8_1:20856660-20856679 Msa1184730:intron 35.0%
!! CAGAAAAATGGCATTGACAA+AGG + chr8_1:20856718-20856737 None:intergenic 35.0%
AAGACCAAATTGACTGACAT+TGG + chr8_1:20856977-20856996 None:intergenic 35.0%
GATTGACACTTACAATTTCG+AGG - chr8_1:20857196-20857215 Msa1184730:intron 35.0%
!!! GAGAGAGGTAAAGTTTTGTT+AGG - chr8_1:20857463-20857482 Msa1184730:intron 35.0%
!!! TATTTTGGTGTTAGGAGACA+GGG + chr8_1:20857644-20857663 None:intergenic 35.0%
!!! TTATTTTGGTGTTAGGAGAC+AGG + chr8_1:20857645-20857664 None:intergenic 35.0%
CTCCTAACACCAAAATAATG+AGG - chr8_1:20857647-20857666 Msa1184730:intron 35.0%
! AATCAAGGTTAAGGTACTTC+TGG + chr8_1:20857767-20857786 None:intergenic 35.0%
GTGCAACAAAGGAAAAATCA+AGG + chr8_1:20857782-20857801 None:intergenic 35.0%
TTCGGACAATTAGACAATGA+TGG - chr8_1:20858050-20858069 Msa1184730:CDS 35.0%
TCGGACAATTAGACAATGAT+GGG - chr8_1:20858051-20858070 Msa1184730:CDS 35.0%
GAACATGAAGAGTGAACATA+TGG - chr8_1:20858143-20858162 Msa1184730:CDS 35.0%
CTCATTGAGAAGTTGAAGAA+AGG + chr8_1:20858209-20858228 None:intergenic 35.0%
CTTTCTTCAACTTCTCAATG+AGG - chr8_1:20858207-20858226 Msa1184730:CDS 35.0%
ATGAAGGTTTCACGAATCTT+AGG - chr8_1:20858306-20858325 Msa1184730:CDS 35.0%
!!! CATATTTTTGGGTCAGGAAA+GGG + chr8_1:20858346-20858365 None:intergenic 35.0%
!!! TCATATTTTTGGGTCAGGAA+AGG + chr8_1:20858347-20858366 None:intergenic 35.0%
!!! AATCGTCATATTTTTGGGTC+AGG + chr8_1:20858352-20858371 None:intergenic 35.0%
CCCAAAAATATGACGATTAG+TGG - chr8_1:20858354-20858373 Msa1184730:five_prime_UTR 35.0%
!!! GAATTGTGGTTTTGGAGGAA+TGG + chr8_1:20849519-20849538 None:intergenic 40.0%
!!! ATGAGGAATTGTGGTTTTGG+AGG + chr8_1:20849524-20849543 None:intergenic 40.0%
TGTGAATAGACCAGTTTCAC+CGG + chr8_1:20849609-20849628 None:intergenic 40.0%
AGTTCTTGATGAACTCGAAG+AGG - chr8_1:20849763-20849782 Msa1184730:CDS 40.0%
! CTTTCTGGGAAGCTTAAATC+AGG - chr8_1:20849944-20849963 Msa1184730:CDS 40.0%
TGATTGAGTTTGAACACACC+AGG - chr8_1:20850522-20850541 Msa1184730:intron 40.0%
!! TGGCTTTATACTGAGATGAG+AGG - chr8_1:20850579-20850598 Msa1184730:intron 40.0%
! GGCTTTATACTGAGATGAGA+GGG - chr8_1:20850580-20850599 Msa1184730:intron 40.0%
!! TCTTTTGTTTGGTATTGCGC+TGG + chr8_1:20850752-20850771 None:intergenic 40.0%
AGCGCAATACCAAACAAAAG+AGG - chr8_1:20850751-20850770 Msa1184730:intron 40.0%
CGTCTAGCTAAATGGGATAA+TGG + chr8_1:20850860-20850879 None:intergenic 40.0%
ATGGAGTCGTCTAGCTAAAT+GGG + chr8_1:20850867-20850886 None:intergenic 40.0%
TATGGAGTCGTCTAGCTAAA+TGG + chr8_1:20850868-20850887 None:intergenic 40.0%
! ACTGTCATTTCGAAGTGGAA+GGG + chr8_1:20851058-20851077 None:intergenic 40.0%
ATCTCAATCAGGGAACATGT+TGG + chr8_1:20851222-20851241 None:intergenic 40.0%
GAAGGTGACTAATCTCAATC+AGG + chr8_1:20851233-20851252 None:intergenic 40.0%
CATGTTCATACTCGGATTCA+TGG + chr8_1:20851350-20851369 None:intergenic 40.0%
CATGAATCCGAGTATGAACA+TGG - chr8_1:20851348-20851367 Msa1184730:intron 40.0%
TCGGTATCCATGTTCATACT+CGG + chr8_1:20851358-20851377 None:intergenic 40.0%
CACCACAAGGATTGTATTGA+CGG + chr8_1:20851613-20851632 None:intergenic 40.0%
TCAATACAATCCTTGTGGTG+AGG - chr8_1:20851613-20851632 Msa1184730:intron 40.0%
! TCCTTTGATGGTAGTACTGT+GGG + chr8_1:20851656-20851675 None:intergenic 40.0%
ACAGTACTACCATCAAAGGA+GGG - chr8_1:20851656-20851675 Msa1184730:intron 40.0%
!! ATAGTTGGTGTTAATGGTGG+TGG - chr8_1:20852136-20852155 Msa1184730:intron 40.0%
!! TAGTTGGTGTTAATGGTGGT+GGG - chr8_1:20852137-20852156 Msa1184730:intron 40.0%
!! ATTGAAGAATGGAGGTGCTA+AGG - chr8_1:20852443-20852462 Msa1184730:intron 40.0%
TTGCAACCTGACCATTAATC+AGG - chr8_1:20852654-20852673 Msa1184730:intron 40.0%
TACCTAACAGGCCTGATTAA+TGG + chr8_1:20852668-20852687 None:intergenic 40.0%
GAATCCAATCAAAATGGGAG+AGG - chr8_1:20853015-20853034 Msa1184730:intron 40.0%
!! TCTTCCTCTCCCATTTTGAT+TGG + chr8_1:20853022-20853041 None:intergenic 40.0%
GAAAATTCAAGCTATGCGGA+AGG + chr8_1:20853244-20853263 None:intergenic 40.0%
TGCTGAGAAAATGAGACATG+TGG + chr8_1:20853428-20853447 None:intergenic 40.0%
! AGCTAGAAATATGGGCTGAA+AGG - chr8_1:20853732-20853751 Msa1184730:intron 40.0%
! AAATATGGGCTGAAAGGACT+GGG - chr8_1:20853738-20853757 Msa1184730:intron 40.0%
ATTTGTACCTGCTGATGCTT+TGG + chr8_1:20853795-20853814 None:intergenic 40.0%
CAGGTTTACACACCAATTAC+AGG - chr8_1:20854109-20854128 Msa1184730:CDS 40.0%
ACACACCAATTACAGGCTAA+TGG - chr8_1:20854116-20854135 Msa1184730:intron 40.0%
! CTCTTCCATTAGCCTGTAAT+TGG + chr8_1:20854124-20854143 None:intergenic 40.0%
GACTACGTTGAGAGGAAAAA+GGG + chr8_1:20854212-20854231 None:intergenic 40.0%
TGACTACGTTGAGAGGAAAA+AGG + chr8_1:20854213-20854232 None:intergenic 40.0%
AGAAAGATGACTACGTTGAG+AGG + chr8_1:20854220-20854239 None:intergenic 40.0%
TTGGTTAGCACCTTCAGAAT+TGG - chr8_1:20854571-20854590 Msa1184730:intron 40.0%
! CTAGCTGAAATTCTAGGAAG+TGG - chr8_1:20854704-20854723 Msa1184730:intron 40.0%
TTCCCTACTTGTAGTGTATG+AGG - chr8_1:20854835-20854854 Msa1184730:intron 40.0%
TTCATTCACCTTGGACATCT+TGG - chr8_1:20854949-20854968 Msa1184730:intron 40.0%
GGTTACGAGATTATCATCCA+TGG - chr8_1:20855012-20855031 Msa1184730:intron 40.0%
TTTGTCCACATTCCGTAAGT+TGG - chr8_1:20855118-20855137 Msa1184730:intron 40.0%
! TCATTGAATTCTCTGGCTTG+TGG + chr8_1:20855322-20855341 None:intergenic 40.0%
CGTGTTTATCTTCTTCCTGT+TGG - chr8_1:20855371-20855390 Msa1184730:intron 40.0%
! TAAAGTGGTGGGATCCAATA+TGG + chr8_1:20855668-20855687 None:intergenic 40.0%
! TTTTGTCTTGGGATAGGTTG+TGG - chr8_1:20855864-20855883 Msa1184730:intron 40.0%
TTTGTCTTGGGATAGGTTGT+GGG - chr8_1:20855865-20855884 Msa1184730:intron 40.0%
AGATGCTAATTACTGTTGGC+AGG - chr8_1:20856605-20856624 Msa1184730:intron 40.0%
GATAGGAAAGATCGTATGAC+TGG + chr8_1:20856826-20856845 None:intergenic 40.0%
AGAATTCAGACAAGGGTGAA+GGG + chr8_1:20856850-20856869 None:intergenic 40.0%
AAGAATTCAGACAAGGGTGA+AGG + chr8_1:20856851-20856870 None:intergenic 40.0%
AGGTCCAATGTCAGTCAATT+TGG - chr8_1:20856970-20856989 Msa1184730:intron 40.0%
ACATAGCCAATGTGCAACAA+AGG + chr8_1:20857793-20857812 None:intergenic 40.0%
CGAAGCTATTCTTGCTTTGA+AGG - chr8_1:20857982-20858001 Msa1184730:intron 40.0%
CGGACAATTAGACAATGATG+GGG - chr8_1:20858052-20858071 Msa1184730:CDS 40.0%
ATGGGGTTTATTTCCACTCT+TGG - chr8_1:20858069-20858088 Msa1184730:CDS 40.0%
! TTCAAGTTCAATGCCAAGAG+TGG + chr8_1:20858085-20858104 None:intergenic 40.0%
! TCGGGACAATTTTCGAACAA+GGG - chr8_1:20858254-20858273 Msa1184730:CDS 40.0%
AAGGTTTCACGAATCTTAGG+TGG - chr8_1:20858309-20858328 Msa1184730:CDS 40.0%
! GGTCAGGAAAGGGTTTTTAT+AGG + chr8_1:20858336-20858355 None:intergenic 40.0%
GAGGTGAAGATGAGGAATTG+TGG + chr8_1:20849533-20849552 None:intergenic 45.0%
!! AGGGGGGTTTGGTTTGAAAT+GGG + chr8_1:20849556-20849575 None:intergenic 45.0%
GTCTATTCACAAAACTCGGC+CGG - chr8_1:20849618-20849637 Msa1184730:three_prime_UTR 45.0%
CGGCCGGTTACTAAAAGAAA+AGG - chr8_1:20849634-20849653 Msa1184730:three_prime_UTR 45.0%
! GGAGAGGTTGTTACGAGTTT+TGG + chr8_1:20849696-20849715 None:intergenic 45.0%
GGTAGCATCTTCGAGTGATT+TGG - chr8_1:20850102-20850121 Msa1184730:intron 45.0%
!! GCATCTTCGAGTGATTTGGT+TGG - chr8_1:20850106-20850125 Msa1184730:intron 45.0%
AAGTTCACCACACACATGAC+TGG + chr8_1:20850274-20850293 None:intergenic 45.0%
TTGAACACACCAGGAGAATG+TGG - chr8_1:20850531-20850550 Msa1184730:intron 45.0%
CTTCAATACCAAAGCCGCAT+CGG + chr8_1:20850698-20850717 None:intergenic 45.0%
TGTTTGGTATTGCGCTGGAT+AGG + chr8_1:20850747-20850766 None:intergenic 45.0%
GACTCCATAAATCAGAAGCC+TGG - chr8_1:20850879-20850898 Msa1184730:intron 45.0%
GTAGCCAGGCTTCTGATTTA+TGG + chr8_1:20850886-20850905 None:intergenic 45.0%
TGCAAGCATCAGTAACTGCT+AGG - chr8_1:20850954-20850973 Msa1184730:intron 45.0%
! CACTGTCATTTCGAAGTGGA+AGG + chr8_1:20851059-20851078 None:intergenic 45.0%
TCTCATGTTGTGGATCAGCT+TGG + chr8_1:20851546-20851565 None:intergenic 45.0%
TATTGACGGAGATCGAACCA+GGG + chr8_1:20851599-20851618 None:intergenic 45.0%
CTCCGTCAATACAATCCTTG+TGG - chr8_1:20851608-20851627 Msa1184730:intron 45.0%
TCCTTGTGGTGAGGCTAAAT+TGG - chr8_1:20851622-20851641 Msa1184730:intron 45.0%
ACCAATTTAGCCTCACCACA+AGG + chr8_1:20851626-20851645 None:intergenic 45.0%
! CCTTTGATGGTAGTACTGTG+GGG + chr8_1:20851655-20851674 None:intergenic 45.0%
! CTCCTTTGATGGTAGTACTG+TGG + chr8_1:20851657-20851676 None:intergenic 45.0%
CACAGTACTACCATCAAAGG+AGG - chr8_1:20851655-20851674 Msa1184730:intron 45.0%
CAGTACTACCATCAAAGGAG+GGG - chr8_1:20851657-20851676 Msa1184730:intron 45.0%
TGGTGGGAAGACAACATCTT+TGG - chr8_1:20852153-20852172 Msa1184730:intron 45.0%
GGTGGGAAGACAACATCTTT+GGG - chr8_1:20852154-20852173 Msa1184730:intron 45.0%
TCTTTCCAGGTACGTAAGGA+GGG + chr8_1:20852256-20852275 None:intergenic 45.0%
ATCTTTCCAGGTACGTAAGG+AGG + chr8_1:20852257-20852276 None:intergenic 45.0%
TGTTAATTGCTTGGGAGGAC+AGG + chr8_1:20852360-20852379 None:intergenic 45.0%
TATAAGCCAGCTTTCCTGCA+AGG + chr8_1:20852422-20852441 None:intergenic 45.0%
! CAGCCTTTAGAAAGCTGAGT+AGG + chr8_1:20852599-20852618 None:intergenic 45.0%
AACAGGCCTGATTAATGGTC+AGG + chr8_1:20852663-20852682 None:intergenic 45.0%
GACCATTAATCAGGCCTGTT+AGG - chr8_1:20852663-20852682 Msa1184730:intron 45.0%
TCACTGCTCCAGGTAGAAAT+GGG + chr8_1:20852752-20852771 None:intergenic 45.0%
AGCATTCCCTGCCTCATTAT+TGG - chr8_1:20852848-20852867 Msa1184730:intron 45.0%
TGAGTATAGTGCAGCTTCCA+AGG + chr8_1:20852968-20852987 None:intergenic 45.0%
TACCAGATATTGTTGGCAGC+TGG - chr8_1:20853680-20853699 Msa1184730:CDS 45.0%
! GAAATATGGGCTGAAAGGAC+TGG - chr8_1:20853737-20853756 Msa1184730:intron 45.0%
! GAGAAATCCAAAGCATCAGC+AGG - chr8_1:20853785-20853804 Msa1184730:intron 45.0%
AAAGTGATAAACGGCAGGCT+AGG + chr8_1:20853834-20853853 None:intergenic 45.0%
GCTGTTGCTAAAGTAGTTGC+TGG - chr8_1:20854162-20854181 Msa1184730:intron 45.0%
!! GGGTCAAAAGCGCTTACATT+GGG + chr8_1:20854192-20854211 None:intergenic 45.0%
!! AGGGTCAAAAGCGCTTACAT+TGG + chr8_1:20854193-20854212 None:intergenic 45.0%
AAGCAAGCAATGCTATCGCT+AGG + chr8_1:20854791-20854810 None:intergenic 45.0%
GTCAAGAACCAAGATGTCCA+AGG + chr8_1:20854960-20854979 None:intergenic 45.0%
! GGACATCTTGGTTCTTGACA+CGG - chr8_1:20854961-20854980 Msa1184730:intron 45.0%
ACAAGCCAACTTACGGAATG+TGG + chr8_1:20855126-20855145 None:intergenic 45.0%
!! AACGGTGTTACAATGCTTGC+AGG - chr8_1:20855252-20855271 Msa1184730:intron 45.0%
ATGCTTGCAGGAGATCTTAC+TGG - chr8_1:20855264-20855283 Msa1184730:intron 45.0%
!! GAGATCTTACTGGTTCTGGA+TGG - chr8_1:20855274-20855293 Msa1184730:intron 45.0%
!! TTCTTCTTTGGGACGAGTGT+TGG - chr8_1:20855468-20855487 Msa1184730:intron 45.0%
TTGGATCCCACCACTTTAAG+TGG - chr8_1:20855670-20855689 Msa1184730:CDS 45.0%
TGGATCCCACCACTTTAAGT+GGG - chr8_1:20855671-20855690 Msa1184730:CDS 45.0%
GAAATGGGTCCCACTTAAAG+TGG + chr8_1:20855683-20855702 None:intergenic 45.0%
! GGGTCCTACACTTTGGAAAT+GGG + chr8_1:20855698-20855717 None:intergenic 45.0%
! TGGGTCCTACACTTTGGAAA+TGG + chr8_1:20855699-20855718 None:intergenic 45.0%
TCAATGTGGGTCCTACACTT+TGG + chr8_1:20855705-20855724 None:intergenic 45.0%
GTGAACAGCAAATTTAGGCG+AGG - chr8_1:20857334-20857353 Msa1184730:intron 45.0%
TTCTGAATCGTAGCATAGCC+TGG + chr8_1:20857844-20857863 None:intergenic 45.0%
CGAATATGCAGAGCAACACT+AGG - chr8_1:20857877-20857896 Msa1184730:intron 45.0%
! TGTTCACCTTTTGCGAAGCT+TGG + chr8_1:20857948-20857967 None:intergenic 45.0%
!! GCTATTCTTGCTTTGAAGGC+AGG - chr8_1:20857986-20858005 Msa1184730:intron 45.0%
TAACCCCTTTGCATGCTTTG+TGG - chr8_1:20858019-20858038 Msa1184730:intron 45.0%
CAACCACAAAGCATGCAAAG+GGG + chr8_1:20858025-20858044 None:intergenic 45.0%
CCAACCACAAAGCATGCAAA+GGG + chr8_1:20858026-20858045 None:intergenic 45.0%
TGCTTTGTGGTTGGCAGTTT+CGG - chr8_1:20858032-20858051 Msa1184730:CDS 45.0%
! CTCGGGACAATTTTCGAACA+AGG - chr8_1:20858253-20858272 Msa1184730:CDS 45.0%
!! CACGAGAGTATTGCTCATGA+AGG - chr8_1:20858290-20858309 Msa1184730:CDS 45.0%
!! ATTAAAATCTTTAATTAAAT+AGG + chr8_1:20850178-20850197 None:intergenic 5.0%
!! AAAAAAAAATATATATATGT+TGG + chr8_1:20851768-20851787 None:intergenic 5.0%
!!! TTAATTCAAATTATTTTTTA+GGG - chr8_1:20856013-20856032 Msa1184730:intron 5.0%
!!! TAAATAAATTTTTTTTTGTA+GGG + chr8_1:20856116-20856135 None:intergenic 5.0%
!!! ATAAATAAATTTTTTTTTGT+AGG + chr8_1:20856117-20856136 None:intergenic 5.0%
GCTCAAGCACACAGCAGAAA+TGG - chr8_1:20849460-20849479 Msa1184730:three_prime_UTR 50.0%
!! TTTTGGAGGAATGGAGAGGC+GGG + chr8_1:20849510-20849529 None:intergenic 50.0%
!!! GTTTTGGAGGAATGGAGAGG+CGG + chr8_1:20849511-20849530 None:intergenic 50.0%
!!! GTGGTTTTGGAGGAATGGAG+AGG + chr8_1:20849514-20849533 None:intergenic 50.0%
GAAATGGGGAGGTGAAGATG+AGG + chr8_1:20849541-20849560 None:intergenic 50.0%
!! GGGTTTGGTTTGAAATGGGG+AGG + chr8_1:20849552-20849571 None:intergenic 50.0%
!! GGGGGGTTTGGTTTGAAATG+GGG + chr8_1:20849555-20849574 None:intergenic 50.0%
!! GAGGGGGGTTTGGTTTGAAA+TGG + chr8_1:20849557-20849576 None:intergenic 50.0%
! TGAAACGGGTTCGAGATGAG+GGG + chr8_1:20849574-20849593 None:intergenic 50.0%
! GTGAAACGGGTTCGAGATGA+GGG + chr8_1:20849575-20849594 None:intergenic 50.0%
! TGTGAAACGGGTTCGAGATG+AGG + chr8_1:20849576-20849595 None:intergenic 50.0%
GAATAGACCAGTTTCACCGG+CGG + chr8_1:20849606-20849625 None:intergenic 50.0%
! GAAGCTCATCAATGACGGAG+AGG + chr8_1:20849712-20849731 None:intergenic 50.0%
ATTGCGACCAGTCATGTGTG+TGG - chr8_1:20850264-20850283 Msa1184730:intron 50.0%
ACAGTGCAACCACATTCTCC+TGG + chr8_1:20850543-20850562 None:intergenic 50.0%
CGAAGTGGAAGGGTCTTGAA+AGG + chr8_1:20851048-20851067 None:intergenic 50.0%
GCTGAAGCAACCGAGAAAAG+TGG - chr8_1:20851128-20851147 Msa1184730:intron 50.0%
AGGGAACATGTTGGCACACA+GGG + chr8_1:20851213-20851232 None:intergenic 50.0%
GCTCTTACATGAAAGGTCCC+TGG - chr8_1:20851579-20851598 Msa1184730:intron 50.0%
! GTATTGACGGAGATCGAACC+AGG + chr8_1:20851600-20851619 None:intergenic 50.0%
CCCCACAGTACTACCATCAA+AGG - chr8_1:20851652-20851671 Msa1184730:intron 50.0%
TCTTCAGTCCCCTCCTTTGA+TGG + chr8_1:20851668-20851687 None:intergenic 50.0%
TGTTTCCCTCCTTACGTACC+TGG - chr8_1:20852248-20852267 Msa1184730:intron 50.0%
! GCTTTTCCTTGCAGGAAAGC+TGG - chr8_1:20852413-20852432 Msa1184730:intron 50.0%
CTCACTGCTCCAGGTAGAAA+TGG + chr8_1:20852753-20852772 None:intergenic 50.0%
CAAAAGTTGCTCACTGCTCC+AGG + chr8_1:20852762-20852781 None:intergenic 50.0%
! CTGGAGCAGTGAGCAACTTT+TGG - chr8_1:20852760-20852779 Msa1184730:intron 50.0%
GTTATCCCAGCAAACGAGGT+AGG + chr8_1:20853148-20853167 None:intergenic 50.0%
CAGTGTTATCCCAGCAAACG+AGG + chr8_1:20853152-20853171 None:intergenic 50.0%
CGGAAGGGCTAGACTAATGA+AGG + chr8_1:20853228-20853247 None:intergenic 50.0%
CACCAGCTGCCAACAATATC+TGG + chr8_1:20853685-20853704 None:intergenic 50.0%
GACTGGGTGTGAGATTGTTG+TGG - chr8_1:20853754-20853773 Msa1184730:intron 50.0%
!! ACAGCTTGTGAAAGCACTGC+AGG + chr8_1:20853950-20853969 None:intergenic 50.0%
AATGCTATCGCTAGGTCACG+TGG + chr8_1:20854783-20854802 None:intergenic 50.0%
!! GCAGGAGATCTTACTGGTTC+TGG - chr8_1:20855270-20855289 Msa1184730:intron 50.0%
!! CTGGTTCTGGATGGAACTAC+TGG - chr8_1:20855283-20855302 Msa1184730:intron 50.0%
TGGGTCCCACTTAAAGTGGT+GGG + chr8_1:20855679-20855698 None:intergenic 50.0%
ATGGGTCCCACTTAAAGTGG+TGG + chr8_1:20855680-20855699 None:intergenic 50.0%
GGGACCCATTTCCAAAGTGT+AGG - chr8_1:20855691-20855710 Msa1184730:intron 50.0%
GGATAGGTTGTGGGTGTAAC+TGG - chr8_1:20855874-20855893 Msa1184730:intron 50.0%
TCTTGCAGAACCATCCAGCT+TGG + chr8_1:20855911-20855930 None:intergenic 50.0%
! AAGCTGGATGGTTCTGCAAG+AGG - chr8_1:20855910-20855929 Msa1184730:intron 50.0%
TTACTGTTGGCAGGTCAGTG+TGG - chr8_1:20856614-20856633 Msa1184730:intron 50.0%
!! GTCAGTGTGGTTGATGAGCT+GGG - chr8_1:20856627-20856646 Msa1184730:intron 50.0%
AGACAAGGGTGAAGGGTGAT+AGG + chr8_1:20856843-20856862 None:intergenic 50.0%
GAAGCTTGGCCTCTCAAGAA+TGG + chr8_1:20857934-20857953 None:intergenic 50.0%
CCCTTTGCATGCTTTGTGGT+TGG - chr8_1:20858023-20858042 Msa1184730:intron 50.0%
GCCAACCACAAAGCATGCAA+AGG + chr8_1:20858027-20858046 None:intergenic 50.0%
! AAACGGGTTCGAGATGAGGG+GGG + chr8_1:20849572-20849591 None:intergenic 55.0%
! GAAACGGGTTCGAGATGAGG+GGG + chr8_1:20849573-20849592 None:intergenic 55.0%
TCCTTCAACCGATGCGGCTT+TGG - chr8_1:20850687-20850706 Msa1184730:intron 55.0%
!! ACCAAAGCCGCATCGGTTGA+AGG + chr8_1:20850691-20850710 None:intergenic 55.0%
CAGGGAACATGTTGGCACAC+AGG + chr8_1:20851214-20851233 None:intergenic 55.0%
AGCAAACGAGGTAGGCTACG+TGG + chr8_1:20853140-20853159 None:intergenic 55.0%
ACGTAGCCTACCTCGTTTGC+TGG - chr8_1:20853139-20853158 Msa1184730:intron 55.0%
CGTAGCCTACCTCGTTTGCT+GGG - chr8_1:20853140-20853159 Msa1184730:intron 55.0%
! CTGGATGGTTCTGCAAGAGG+TGG - chr8_1:20855913-20855932 Msa1184730:intron 55.0%
TTCTGCAAGAGGTGGCTGTG+TGG - chr8_1:20855921-20855940 Msa1184730:intron 55.0%
!! GGTCAGTGTGGTTGATGAGC+TGG - chr8_1:20856626-20856645 Msa1184730:intron 55.0%
ACAAAGGCCTCTGCGTCGAA+GGG + chr8_1:20856702-20856721 None:intergenic 55.0%
GCAGAGCAACACTAGGTCAC+AGG - chr8_1:20857884-20857903 Msa1184730:intron 55.0%
GAGAGGCCAAGCTTCGCAAA+AGG - chr8_1:20857939-20857958 Msa1184730:intron 55.0%
!! TGCTTTGAAGGCAGGTCAGC+TGG - chr8_1:20857994-20858013 Msa1184730:intron 55.0%
GAGGCGGGTGAATGAAGCAG+AGG + chr8_1:20849495-20849514 None:intergenic 60.0%
GGTTCGAGATGAGGGGGGTT+TGG + chr8_1:20849567-20849586 None:intergenic 60.0%
TAGACCAGTTTCACCGGCGG+CGG + chr8_1:20849603-20849622 None:intergenic 60.0%
CCTCTGCGTCGAAGGGTTGA+AGG + chr8_1:20856695-20856714 None:intergenic 60.0%
CCTTCAACCCTTCGACGCAG+AGG - chr8_1:20856692-20856711 Msa1184730:intron 60.0%
GACAAAGGCCTCTGCGTCGA+AGG + chr8_1:20856703-20856722 None:intergenic 60.0%
GGCGGCGGAGCATGTGAAAC+GGG + chr8_1:20849588-20849607 None:intergenic 65.0%
CGGCGGCGGAGCATGTGAAA+CGG + chr8_1:20849589-20849608 None:intergenic 65.0%
CGTTTCACATGCTCCGCCGC+CGG - chr8_1:20849587-20849606 Msa1184730:three_prime_UTR 65.0%
TGCTCCGCCGCCGGTGAAAC+TGG - chr8_1:20849596-20849615 Msa1184730:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 20849414 20858401 20849414 ID=Msa1184730;Name=Msa1184730
chr8_1 mRNA 20849414 20858401 20849414 ID=Msa1184730-mRNA-1;Parent=Msa1184730;Name=Msa1184730-mRNA-1;_AED=0.11;_eAED=0.11;_QI=65|0.75|0.76|1|0.66|0.76|13|339|389
chr8_1 exon 20849414 20849970 20849414 ID=Msa1184730-mRNA-1:exon:7951;Parent=Msa1184730-mRNA-1
chr8_1 exon 20851058 20851063 20851058 ID=Msa1184730-mRNA-1:exon:7950;Parent=Msa1184730-mRNA-1
chr8_1 exon 20851079 20851133 20851079 ID=Msa1184730-mRNA-1:exon:7949;Parent=Msa1184730-mRNA-1
chr8_1 exon 20851873 20851935 20851873 ID=Msa1184730-mRNA-1:exon:7948;Parent=Msa1184730-mRNA-1
chr8_1 exon 20852473 20852541 20852473 ID=Msa1184730-mRNA-1:exon:7947;Parent=Msa1184730-mRNA-1
chr8_1 exon 20853621 20853703 20853621 ID=Msa1184730-mRNA-1:exon:7946;Parent=Msa1184730-mRNA-1
chr8_1 exon 20853793 20853861 20853793 ID=Msa1184730-mRNA-1:exon:7945;Parent=Msa1184730-mRNA-1
chr8_1 exon 20854009 20854129 20854009 ID=Msa1184730-mRNA-1:exon:7944;Parent=Msa1184730-mRNA-1
chr8_1 exon 20855351 20855388 20855351 ID=Msa1184730-mRNA-1:exon:7943;Parent=Msa1184730-mRNA-1
chr8_1 exon 20855640 20855698 20855640 ID=Msa1184730-mRNA-1:exon:7942;Parent=Msa1184730-mRNA-1
chr8_1 exon 20855802 20855875 20855802 ID=Msa1184730-mRNA-1:exon:7941;Parent=Msa1184730-mRNA-1
chr8_1 exon 20857932 20857940 20857932 ID=Msa1184730-mRNA-1:exon:7940;Parent=Msa1184730-mRNA-1
chr8_1 exon 20858031 20858401 20858031 ID=Msa1184730-mRNA-1:exon:7939;Parent=Msa1184730-mRNA-1
chr8_1 five_prime_UTR 20858337 20858401 20858337 ID=Msa1184730-mRNA-1:five_prime_utr;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20858031 20858336 20858031 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20857932 20857940 20857932 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20855802 20855875 20855802 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20855640 20855698 20855640 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20855351 20855388 20855351 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20854009 20854129 20854009 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20853793 20853861 20853793 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20853621 20853703 20853621 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20852473 20852541 20852473 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20851873 20851935 20851873 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20851079 20851133 20851079 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20851058 20851063 20851058 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 CDS 20849753 20849970 20849753 ID=Msa1184730-mRNA-1:cds;Parent=Msa1184730-mRNA-1
chr8_1 three_prime_UTR 20849414 20849752 20849414 ID=Msa1184730-mRNA-1:three_prime_utr;Parent=Msa1184730-mRNA-1
Gene Sequence

>Msa1184730

ATGGCTACAACTGCCTCTGCTTCATTCACCCGCCTCTCCATTCCTCCAAAACCACAATTCCTCATCTTCACCTCCCCATTTCAAACCAAACCCCCCTCATCTCGAACCCGTTTCACATGCTCCGCCGCCGGTGAAACTGGTCTATTCACAAAACTCGGCCGGTTACTAAAAGAAAAGGCAAAAAGCGATGTAGAAAAACTCTTCTCTGGTTTCTCCAAAACTCGTAACAACCTCTCCGTCATTGATGAGCTTCTTCTTTATTGGAATCTCTCTGATACTGATAGAGTTCTTGATGAACTCGAAGAGGCTTTATTAGAAGCACTGAAGAAGAATGTTTTGGATTTGTTAAGCAACAAGGGGAGTAAAACTGAACTTCAACTTGGATATAGGAAACCAGCCATAATAATGATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTTGGGAAAGCTGGCTTATAGATTGAAGAATGGAGGTGCTAAGATATTGTTGGCAGCTGGTGATACATTCAGAGCAGCCGCTAGTGATCAGCTAGAAATATGGGCTGAAAGGACTGGGTGTGAGATTGTTGTGGCTGAATCTGAGAAATCCAAAGCATCAGCAGTGCTTTCACAAGCTGTAAAAAGAGGAAAAGAGCTAGGTTATGATATTGTATTATGTGATACATCTGGACGTTTACACACCAATTACAGGCTAATGGAAGAGTTAATTTCTTGTAAAAAGGCTGTTGCTAAAGTAGTTGCTGGTGCACCCAATGAGATCTTACTGGTTCTGGATGGAACTACTGGTTTGAATATGTTGCCACAAGCCAGAGAATTCAATGAAGTTGTGGGTGTAACTGGTTTAATTTTGACCAAGCTGGATGGTTCTGCAAGAGGTGGCTGTGTGGTGTTGAAGACCTTCAACCCTTCGACGCAGAGGCCTTTGTCAATGCCATTTTTCTGCTTTGGCTATGCTACGATTCAGAATCACATATTTACACGAATATGCAGAGCAACACTAGGTCACAGGAAAGACAACATTTTATCATTTAATCCATTCTTGAGAGGCCAAGCTTCGCAAAAGGTGAACATGATTTTGAGGGAGCGAAGCTATTCTTGCTTTGAAGGCAGGTCAGCTGGTATAACCCCTTTGCATGCTTTGTGGTTGGCAGTTTCGGACAATTAG

Protein sequence

>Msa1184730

MATTASASFTRLSIPPKPQFLIFTSPFQTKPPSSRTRFTCSAAGETGLFTKLGRLLKEKAKSDVEKLFSGFSKTRNNLSVIDELLLYWNLSDTDRVLDELEEALLEALKKNVLDLLSNKGSKTELQLGYRKPAIIMIVGVNGGGKTTSLGKLAYRLKNGGAKILLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRGKELGYDIVLCDTSGRLHTNYRLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVLKTFNPSTQRPLSMPFFCFGYATIQNHIFTRICRATLGHRKDNILSFNPFLRGQASQKVNMILRERSYSCFEGRSAGITPLHALWLAVSDN*