AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0679990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679990 MtrunA17_Chr4g0026091 95.745 235 10 0 1 235 83 317 6.97e-159 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679990 AT5G22340.1 58.687 259 81 3 2 235 66 323 2.79e-102 300
Msa0679990 AT5G22340.2 56.637 226 72 3 2 202 66 290 2.83e-81 247

Find 112 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGTCATCTTCCTATTTAT+TGG 0.108061 4_4:+38645546 None:intergenic
ATCATCAGTCTTATTAATTA+TGG 0.179954 4_4:-38642969 Msa0679990:three_prime_UTR
GTGATCCCGGCAGCAATTTA+TGG 0.193346 4_4:-38643772 Msa0679990:CDS
GCTTCATATTATAACTTTAA+TGG 0.212052 4_4:-38646286 Msa0679990:five_prime_UTR
GCCTTCCTTCAGAATTCTTC+TGG 0.212344 4_4:+38643255 None:intergenic
CAGCTTGTGCCAGCCATGTT+TGG 0.234831 4_4:-38643348 Msa0679990:CDS
CACTTAACGGCTTAAGCTTT+GGG 0.246140 4_4:-38646636 Msa0679990:five_prime_UTR
TACATCACTCACTAAAATTA+TGG 0.250374 4_4:+38645959 None:intergenic
CAAGAACTTGTGATTTAATA+TGG 0.266135 4_4:-38645878 Msa0679990:five_prime_UTR
GCACTCCTCTAATTAAAATT+AGG 0.271442 4_4:+38646327 None:intergenic
AGAATTACTACTTCTCTCTT+TGG 0.277918 4_4:-38645116 Msa0679990:CDS
CTACTTCTCTCTTTGGGTAT+TGG 0.278535 4_4:-38645109 Msa0679990:CDS
CGAATGGATTTCAGAAATTC+TGG 0.279455 4_4:-38645855 Msa0679990:CDS
CTCTCTTTGGGTATTGGATT+GGG 0.283833 4_4:-38645103 Msa0679990:CDS
ACAATTCTGCACCAATAAAT+AGG 0.292316 4_4:-38645557 Msa0679990:CDS
CATGGCTGCCAAGGTGAAAA+TGG 0.294570 4_4:-38646881 Msa0679990:five_prime_UTR
TCTCTCTTTGGGTATTGGAT+TGG 0.297827 4_4:-38645104 Msa0679990:CDS
AGTACCCAAGAGTGGTTATT+AGG 0.298328 4_4:-38645582 Msa0679990:CDS
GCAGGAATCCCTTCACAAAT+TGG 0.317027 4_4:+38646823 None:intergenic
ATGAACTTTCTTTCACTTAA+CGG 0.321512 4_4:-38646649 Msa0679990:five_prime_UTR
GGCAGCAATTTATGGACTTT+GGG 0.326123 4_4:-38643764 Msa0679990:CDS
GTTATAAATTTAGCTTGTAT+TGG 0.330761 4_4:+38642816 None:intergenic
CGGCAGCAATTTATGGACTT+TGG 0.331522 4_4:-38643765 Msa0679990:CDS
GAATTACTACTTCTCTCTTT+GGG 0.333456 4_4:-38645115 Msa0679990:CDS
TTCTATTTGTTGAGCATTGT+TGG 0.339523 4_4:+38645803 None:intergenic
TCACTTAACGGCTTAAGCTT+TGG 0.340812 4_4:-38646637 Msa0679990:five_prime_UTR
TCAGTCTTGCTCTGTTGTCT+TGG 0.346271 4_4:+38645315 None:intergenic
AGCTTGTGCCAGCCATGTTT+GGG 0.359430 4_4:-38643347 Msa0679990:CDS
TTATAAATTTAGCTTGTATT+GGG 0.364168 4_4:+38642817 None:intergenic
TGTTTCTGCTGAGAGCTAAT+TGG 0.366076 4_4:-38645989 Msa0679990:five_prime_UTR
TTAGCACACAATAGCATTGC+AGG 0.372804 4_4:-38646481 Msa0679990:five_prime_UTR
GCTGCAATAGTGTGTTTATA+TGG 0.392721 4_4:-38646784 Msa0679990:five_prime_UTR
CTGCTATAAGTTATGCGATT+GGG 0.398513 4_4:-38644747 Msa0679990:CDS
TATTGTTATCTAGTGTTTGT+TGG 0.398659 4_4:+38642851 None:intergenic
ATCTCCAAGGCTTGTGATCC+CGG 0.413235 4_4:-38643785 Msa0679990:CDS
ATAATTAATAAGACTGATGA+TGG 0.416153 4_4:+38642971 None:intergenic
ACATCTAACAATATTATCAA+TGG 0.416926 4_4:+38646682 None:intergenic
TGTCACCTAATAACCACTCT+TGG 0.417338 4_4:+38645577 None:intergenic
TTAGTTTCTAATCAAGATCA+AGG 0.430205 4_4:+38642887 None:intergenic
TGCTCAAAGGATAGAAATAA+TGG 0.431135 4_4:+38646073 None:intergenic
ATTCTTTCGAGAAAACAATC+AGG 0.440956 4_4:-38643828 Msa0679990:CDS
TATTTGAGGAACGGTTTCAC+TGG 0.443640 4_4:+38644013 None:intergenic
GCTTAAGCTTTGGGGAGAAC+TGG 0.443715 4_4:-38646627 Msa0679990:five_prime_UTR
ATGCAATAACAAACCTGAAA+AGG 0.451361 4_4:+38644722 None:intergenic
TTGAAGGATAGAGAATTAAA+CGG 0.472253 4_4:-38645912 Msa0679990:five_prime_UTR
TGTTATCTAGTGTTTGTTGG+AGG 0.477872 4_4:+38642854 None:intergenic
GCCTATGGCACCACCATGGC+AGG 0.483084 4_4:+38646805 None:intergenic
GTATGTGTATATTGAAAGAA+TGG 0.484252 4_4:-38643146 Msa0679990:three_prime_UTR
TCCTGCCATGGTGGTGCCAT+AGG 0.492304 4_4:-38646806 Msa0679990:five_prime_UTR
TTGTGATTTAATATGGCGAA+TGG 0.496486 4_4:-38645871 Msa0679990:exon
GTCACCTAATAACCACTCTT+GGG 0.503886 4_4:+38645578 None:intergenic
CAAAGTCCATAAATTGCTGC+CGG 0.506806 4_4:+38643766 None:intergenic
TACTAGCTCAAAGGTTGGAT+CGG 0.508148 4_4:+38646457 None:intergenic
TGCTTTACTAGCTCAAAGGT+TGG 0.509026 4_4:+38646452 None:intergenic
AAACACACTATTGCAGCCTA+TGG 0.510346 4_4:+38646790 None:intergenic
GTGTTTATATGGCGGATTGT+TGG 0.513495 4_4:-38646773 Msa0679990:five_prime_UTR
ATCCCTTCACAAATTGGCTA+TGG 0.515780 4_4:+38646829 None:intergenic
AGTTCTAACTCATATGCCAT+TGG 0.520168 4_4:+38643079 None:intergenic
TCACAAATTGGCTATGGAAG+TGG 0.523547 4_4:+38646835 None:intergenic
CAATGCTCAACAAATAGAAC+AGG 0.524035 4_4:-38645799 Msa0679990:intron
TATAGAGACAATAAAGACTT+AGG 0.528292 4_4:-38643288 Msa0679990:CDS
CCCTTGCTTTACTAGCTCAA+AGG 0.529209 4_4:+38646448 None:intergenic
TCTCTTTGACCGAGTAATCA+AGG 0.531406 4_4:-38646585 Msa0679990:five_prime_UTR
TTTCATGAATATTTGAGGAA+CGG 0.534985 4_4:+38644004 None:intergenic
TCCAGAAGAATTCTGAAGGA+AGG 0.535141 4_4:-38643256 Msa0679990:exon
ATTATACTTAATCATTGGCA+TGG 0.539225 4_4:-38646041 Msa0679990:five_prime_UTR
GAGAAAACAATCAGGGGTAG+TGG 0.540135 4_4:-38643820 Msa0679990:CDS
ACCTTTGAGCTAGTAAAGCA+AGG 0.540366 4_4:-38646449 Msa0679990:five_prime_UTR
CCTTTGAGCTAGTAAAGCAA+GGG 0.542313 4_4:-38646448 Msa0679990:five_prime_UTR
AAAAGTCTATTTAAGTCCAA+TGG 0.547562 4_4:-38643095 Msa0679990:three_prime_UTR
TTCCATAGCCAATTTGTGAA+GGG 0.551662 4_4:-38646831 Msa0679990:five_prime_UTR
GCTGCCGGGATCACAAGCCT+TGG 0.555710 4_4:+38643781 None:intergenic
ACAAACATCCCAAACATGGC+TGG 0.556898 4_4:+38643339 None:intergenic
TGCTATAAGTTATGCGATTG+GGG 0.558016 4_4:-38644746 Msa0679990:CDS
GTATAGCACTTTCATCTCCA+AGG 0.559840 4_4:-38643798 Msa0679990:CDS
GTGCTAGCAACACACTGTGT+TGG 0.562744 4_4:-38646308 Msa0679990:five_prime_UTR
GCTCAGCTACCTTGATTACT+CGG 0.564293 4_4:+38646576 None:intergenic
GGTATTGGATTGGGTTGTAG+CGG 0.567550 4_4:-38645094 Msa0679990:CDS
CTTCCATAGCCAATTTGTGA+AGG 0.570831 4_4:-38646832 Msa0679990:five_prime_UTR
ATCATAGATACTAACAGTGA+TGG 0.576106 4_4:-38645624 Msa0679990:CDS
ATTCTGAAGGAAGGCTGAAG+TGG 0.576112 4_4:-38643247 Msa0679990:exon
TTCTTTCGAGAAAACAATCA+GGG 0.581970 4_4:-38643827 Msa0679990:CDS
AAAGTCCATAAATTGCTGCC+GGG 0.582914 4_4:+38643767 None:intergenic
CATGTAATCATGAGGTGTGA+GGG 0.584386 4_4:-38643044 Msa0679990:three_prime_UTR
GCTGCTATAAGTTATGCGAT+TGG 0.586026 4_4:-38644748 Msa0679990:CDS
TGCCAATGACATGAAAACAT+AGG 0.587335 4_4:+38646015 None:intergenic
CATGTTGATACAAGAGCTGA+AGG 0.591014 4_4:+38644048 None:intergenic
AATGGCGGTCATGGCTGCCA+AGG 0.593770 4_4:-38646890 Msa0679990:five_prime_UTR
TAGCACACAATAGCATTGCA+GGG 0.594168 4_4:-38646480 Msa0679990:five_prime_UTR
TTGTGAAGGGATTCCTGCCA+TGG 0.594796 4_4:-38646818 Msa0679990:five_prime_UTR
ACTTAACGGCTTAAGCTTTG+GGG 0.598895 4_4:-38646635 Msa0679990:five_prime_UTR
ATGTTGTTAAATGGCGGTCA+TGG 0.605406 4_4:-38646899 None:intergenic
AATTTCCAGAAGAATTCTGA+AGG 0.607187 4_4:-38643260 Msa0679990:exon
GCAGTGTTGTCGATGGCGGA+AGG 0.610677 4_4:+38646750 None:intergenic
GAATGCAGTGTTGTCGATGG+CGG 0.615345 4_4:+38646746 None:intergenic
AACTTTCAAGTACCCAAGAG+TGG 0.615621 4_4:-38645590 Msa0679990:CDS
GCAATAGTGTGTTTATATGG+CGG 0.621493 4_4:-38646781 Msa0679990:five_prime_UTR
AAATAGGAAGATGACTGCAA+AGG 0.624624 4_4:-38645541 Msa0679990:intron
TCATGTAATCATGAGGTGTG+AGG 0.626363 4_4:-38643045 Msa0679990:three_prime_UTR
GTAGACAAACATCCCAAACA+TGG 0.634660 4_4:+38643335 None:intergenic
ATGAGTATCATGTAATCATG+AGG 0.637383 4_4:-38643052 Msa0679990:three_prime_UTR
TTTAGTGAGTGATGTAGATG+AGG 0.640687 4_4:-38645952 Msa0679990:five_prime_UTR
TGAAGGGATTCCTGCCATGG+TGG 0.659284 4_4:-38646815 Msa0679990:five_prime_UTR
CTGCCAAGGTGAAAATGGAA+TGG 0.660664 4_4:-38646876 Msa0679990:five_prime_UTR
ATAAAGCAAATGTTAATGCG+AGG 0.661697 4_4:+38646211 None:intergenic
TAAGAATGCAGTGTTGTCGA+TGG 0.665099 4_4:+38646743 None:intergenic
TGCAGCCTATGGCACCACCA+TGG 0.665994 4_4:+38646801 None:intergenic
ATAGATACTAACAGTGATGG+CGG 0.685515 4_4:-38645621 Msa0679990:CDS
TCTTTCGAGAAAACAATCAG+GGG 0.694510 4_4:-38643826 Msa0679990:CDS
GTGAAAATGGAATGGTGTGG+CGG 0.697009 4_4:-38646868 Msa0679990:five_prime_UTR
TCAAAGGATAGAAATAATGG+CGG 0.734096 4_4:+38646076 None:intergenic
AAGGTGAAAATGGAATGGTG+TGG 0.784398 4_4:-38646871 Msa0679990:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAACTAAAAATAAAATAT+TGG + chr4_4:38643286-38643305 None:intergenic 10.0%
!!! TGATTAAGTATAATTTTTTT+AGG + chr4_4:38643650-38643669 None:intergenic 10.0%
!! AAAAAATTATACTTAATCAT+TGG - chr4_4:38643651-38643670 Msa0679990:intron 10.0%
!! CAAAAAAAAAAAAATTTACA+GGG + chr4_4:38645242-38645261 None:intergenic 10.0%
!! TCAAAAAAAAAAAAATTTAC+AGG + chr4_4:38645243-38645262 None:intergenic 10.0%
!!! AAAAAATATATATTTTACAG+GGG - chr4_4:38645380-38645399 Msa0679990:intron 10.0%
!!! TCAAAAAAAAAAAATTTTAC+AGG - chr4_4:38645409-38645428 Msa0679990:intron 10.0%
!!! CAAAAAAAAAAAATTTTACA+GGG - chr4_4:38645410-38645429 Msa0679990:intron 10.0%
!!! AAAAAAAAAAAATTTTACAG+GGG - chr4_4:38645411-38645430 Msa0679990:intron 10.0%
!! TCAAACTAAAAATAAAATAT+TGG + chr4_4:38643286-38643305 None:intergenic 10.0%
!!! TGATTAAGTATAATTTTTTT+AGG + chr4_4:38643650-38643669 None:intergenic 10.0%
!! AAAAAATTATACTTAATCAT+TGG - chr4_4:38643651-38643670 Msa0679990:intron 10.0%
!! CAAAAAAAAAAAAATTTACA+GGG + chr4_4:38645242-38645261 None:intergenic 10.0%
!! TCAAAAAAAAAAAAATTTAC+AGG + chr4_4:38645243-38645262 None:intergenic 10.0%
!!! AAAAAATATATATTTTACAG+GGG - chr4_4:38645380-38645399 Msa0679990:intron 10.0%
!!! TCAAAAAAAAAAAATTTTAC+AGG - chr4_4:38645409-38645428 Msa0679990:intron 10.0%
!!! CAAAAAAAAAAAATTTTACA+GGG - chr4_4:38645410-38645429 Msa0679990:intron 10.0%
!!! AAAAAAAAAAAATTTTACAG+GGG - chr4_4:38645411-38645430 Msa0679990:intron 10.0%
!! ACTAAAAATAAAATATTGGT+GGG + chr4_4:38643282-38643301 None:intergenic 15.0%
!! AACTAAAAATAAAATATTGG+TGG + chr4_4:38643283-38643302 None:intergenic 15.0%
!! TAATAGCTTATGTTAAAAAA+AGG - chr4_4:38643323-38643342 Msa0679990:CDS 15.0%
!! AATAGCTTATGTTAAAAAAA+GGG - chr4_4:38643324-38643343 Msa0679990:CDS 15.0%
!!! TTTACTTATTTTTCATAGTA+AGG - chr4_4:38643436-38643455 Msa0679990:intron 15.0%
!!! TATGGTTTTCATTTTTTATT+TGG - chr4_4:38644179-38644198 Msa0679990:intron 15.0%
!! AAAAAAATAAATAAATCAGC+AGG + chr4_4:38644545-38644564 None:intergenic 15.0%
!! ATAAGATGAAAGAAATAATT+TGG + chr4_4:38644847-38644866 None:intergenic 15.0%
!! TAAATATGATTAAAGTCAAA+GGG - chr4_4:38645169-38645188 Msa0679990:intron 15.0%
!!! CAAAACTAATTTTTTTTACA+GGG + chr4_4:38645273-38645292 None:intergenic 15.0%
!!! TCAAAACTAATTTTTTTTAC+AGG + chr4_4:38645274-38645293 None:intergenic 15.0%
!!! AAAAAAAATTGGTTTTTGTT+TGG - chr4_4:38645337-38645356 Msa0679990:intron 15.0%
!!! AAAAATATATATTTTACAGG+GGG - chr4_4:38645381-38645400 Msa0679990:intron 15.0%
!!! AAAAAAAAAAATTTTACAGG+GGG - chr4_4:38645412-38645431 Msa0679990:intron 15.0%
!! AAAATACCAAACTTAAAATA+TGG + chr4_4:38646135-38646154 None:intergenic 15.0%
!!! TTATAAATTTAGCTTGTATT+GGG + chr4_4:38646883-38646902 None:intergenic 15.0%
!! ACTAAAAATAAAATATTGGT+GGG + chr4_4:38643282-38643301 None:intergenic 15.0%
!! AACTAAAAATAAAATATTGG+TGG + chr4_4:38643283-38643302 None:intergenic 15.0%
!! TAATAGCTTATGTTAAAAAA+AGG - chr4_4:38643323-38643342 Msa0679990:CDS 15.0%
!! AATAGCTTATGTTAAAAAAA+GGG - chr4_4:38643324-38643343 Msa0679990:CDS 15.0%
!!! TTTACTTATTTTTCATAGTA+AGG - chr4_4:38643436-38643455 Msa0679990:intron 15.0%
!!! TATGGTTTTCATTTTTTATT+TGG - chr4_4:38644179-38644198 Msa0679990:intron 15.0%
!! AAAAAAATAAATAAATCAGC+AGG + chr4_4:38644545-38644564 None:intergenic 15.0%
!! ATAAGATGAAAGAAATAATT+TGG + chr4_4:38644847-38644866 None:intergenic 15.0%
!! TAAATATGATTAAAGTCAAA+GGG - chr4_4:38645169-38645188 Msa0679990:intron 15.0%
!!! CAAAACTAATTTTTTTTACA+GGG + chr4_4:38645273-38645292 None:intergenic 15.0%
!!! TCAAAACTAATTTTTTTTAC+AGG + chr4_4:38645274-38645293 None:intergenic 15.0%
!!! AAAAAAAATTGGTTTTTGTT+TGG - chr4_4:38645337-38645356 Msa0679990:intron 15.0%
!!! AAAAATATATATTTTACAGG+GGG - chr4_4:38645381-38645400 Msa0679990:intron 15.0%
!!! AAAAAAAAAAATTTTACAGG+GGG - chr4_4:38645412-38645431 Msa0679990:intron 15.0%
!! AAAATACCAAACTTAAAATA+TGG + chr4_4:38646135-38646154 None:intergenic 15.0%
!!! TTATAAATTTAGCTTGTATT+GGG + chr4_4:38646883-38646902 None:intergenic 15.0%
!!! ACTACTTTCTTTTTTATTCT+TGG - chr4_4:38642979-38642998 Msa0679990:three_prime_UTR 20.0%
!!! CTACTTTCTTTTTTATTCTT+GGG - chr4_4:38642980-38642999 Msa0679990:three_prime_UTR 20.0%
!! ACATCTAACAATATTATCAA+TGG + chr4_4:38643018-38643037 None:intergenic 20.0%
!! GCTTCATATTATAACTTTAA+TGG - chr4_4:38643411-38643430 Msa0679990:intron 20.0%
!!! TTTCATTTTTTATTTGGATC+TGG - chr4_4:38644185-38644204 Msa0679990:intron 20.0%
!!! GTTTACAACTATTTTGTTAA+GGG + chr4_4:38644242-38644261 None:intergenic 20.0%
!!! AGTTTACAACTATTTTGTTA+AGG + chr4_4:38644243-38644262 None:intergenic 20.0%
!!! TTTTCAAGTTTGTTTTTTCT+TGG - chr4_4:38644294-38644313 Msa0679990:intron 20.0%
!! ATGATAAGATTAAGTTTAGA+TGG - chr4_4:38644764-38644783 Msa0679990:intron 20.0%
!! TTTACTATGTCTTATCATAA+TGG - chr4_4:38644793-38644812 Msa0679990:intron 20.0%
!! AATTTAACTAGATTTATGCT+TGG - chr4_4:38645020-38645039 Msa0679990:intron 20.0%
!! GTAAATATGATTAAAGTCAA+AGG - chr4_4:38645168-38645187 Msa0679990:intron 20.0%
!!! AAAATATATATTTTACAGGG+GGG - chr4_4:38645382-38645401 Msa0679990:intron 20.0%
!!! AAAAAAAAAATTTTACAGGG+GGG - chr4_4:38645413-38645432 Msa0679990:intron 20.0%
!! TATTAACCTAAAGTCAAATA+GGG - chr4_4:38645475-38645494 Msa0679990:intron 20.0%
!!! TTCTTTTTCATGAATATTTG+AGG + chr4_4:38645701-38645720 None:intergenic 20.0%
!!! AAATTCAAAGTGAAAGTTTT+CGG + chr4_4:38645739-38645758 None:intergenic 20.0%
!! AAATATTTCATAACCAGAAT+TGG - chr4_4:38645823-38645842 Msa0679990:CDS 20.0%
!!! AACAATCCATATTTTAAGTT+TGG - chr4_4:38646126-38646145 Msa0679990:intron 20.0%
!!! ACATACTATATGACATTTTT+TGG + chr4_4:38646537-38646556 None:intergenic 20.0%
!! ATAATTAATAAGACTGATGA+TGG + chr4_4:38646729-38646748 None:intergenic 20.0%
!!! ATCATCAGTCTTATTAATTA+TGG - chr4_4:38646728-38646747 Msa0679990:five_prime_UTR 20.0%
!!! GTTATAAATTTAGCTTGTAT+TGG + chr4_4:38646884-38646903 None:intergenic 20.0%
!!! ACTACTTTCTTTTTTATTCT+TGG - chr4_4:38642979-38642998 Msa0679990:three_prime_UTR 20.0%
!!! CTACTTTCTTTTTTATTCTT+GGG - chr4_4:38642980-38642999 Msa0679990:three_prime_UTR 20.0%
!! ACATCTAACAATATTATCAA+TGG + chr4_4:38643018-38643037 None:intergenic 20.0%
!! GCTTCATATTATAACTTTAA+TGG - chr4_4:38643411-38643430 Msa0679990:intron 20.0%
!!! TTTCATTTTTTATTTGGATC+TGG - chr4_4:38644185-38644204 Msa0679990:intron 20.0%
!!! GTTTACAACTATTTTGTTAA+GGG + chr4_4:38644242-38644261 None:intergenic 20.0%
!!! AGTTTACAACTATTTTGTTA+AGG + chr4_4:38644243-38644262 None:intergenic 20.0%
!!! TTTTCAAGTTTGTTTTTTCT+TGG - chr4_4:38644294-38644313 Msa0679990:intron 20.0%
!! ATGATAAGATTAAGTTTAGA+TGG - chr4_4:38644764-38644783 Msa0679990:intron 20.0%
!! TTTACTATGTCTTATCATAA+TGG - chr4_4:38644793-38644812 Msa0679990:intron 20.0%
!! AATTTAACTAGATTTATGCT+TGG - chr4_4:38645020-38645039 Msa0679990:intron 20.0%
!! GTAAATATGATTAAAGTCAA+AGG - chr4_4:38645168-38645187 Msa0679990:intron 20.0%
!!! AAAATATATATTTTACAGGG+GGG - chr4_4:38645382-38645401 Msa0679990:intron 20.0%
!!! AAAAAAAAAATTTTACAGGG+GGG - chr4_4:38645413-38645432 Msa0679990:intron 20.0%
!! TATTAACCTAAAGTCAAATA+GGG - chr4_4:38645475-38645494 Msa0679990:intron 20.0%
!!! TTCTTTTTCATGAATATTTG+AGG + chr4_4:38645701-38645720 None:intergenic 20.0%
!!! AAATTCAAAGTGAAAGTTTT+CGG + chr4_4:38645739-38645758 None:intergenic 20.0%
!! AAATATTTCATAACCAGAAT+TGG - chr4_4:38645823-38645842 Msa0679990:CDS 20.0%
!!! AACAATCCATATTTTAAGTT+TGG - chr4_4:38646126-38646145 Msa0679990:intron 20.0%
!!! ACATACTATATGACATTTTT+TGG + chr4_4:38646537-38646556 None:intergenic 20.0%
!! ATAATTAATAAGACTGATGA+TGG + chr4_4:38646729-38646748 None:intergenic 20.0%
!!! ATCATCAGTCTTATTAATTA+TGG - chr4_4:38646728-38646747 Msa0679990:five_prime_UTR 20.0%
!!! GTTATAAATTTAGCTTGTAT+TGG + chr4_4:38646884-38646903 None:intergenic 20.0%
! ATGAACTTTCTTTCACTTAA+CGG - chr4_4:38643048-38643067 Msa0679990:three_prime_UTR 25.0%
!!! AAGCTCCTAATTTTAATTAG+AGG - chr4_4:38643365-38643384 Msa0679990:intron 25.0%
!! TTTATGCCTACAAATTTGTT+GGG - chr4_4:38643504-38643523 Msa0679990:intron 25.0%
!!! ATTATGCAACAACCTTTTTT+GGG + chr4_4:38643560-38643579 None:intergenic 25.0%
!!! AATTATGCAACAACCTTTTT+TGG + chr4_4:38643561-38643580 None:intergenic 25.0%
! CAAATAATATAGAAACTACC+AGG + chr4_4:38643587-38643606 None:intergenic 25.0%
!!! TAATTTTTTTAGGTGCTCAA+AGG + chr4_4:38643640-38643659 None:intergenic 25.0%
! ATTATACTTAATCATTGGCA+TGG - chr4_4:38643656-38643675 Msa0679990:intron 25.0%
! TACATCACTCACTAAAATTA+TGG + chr4_4:38643741-38643760 None:intergenic 25.0%
! TTGAAGGATAGAGAATTAAA+CGG - chr4_4:38643785-38643804 Msa0679990:CDS 25.0%
! CAAGAACTTGTGATTTAATA+TGG - chr4_4:38643819-38643838 Msa0679990:CDS 25.0%
!! ACTATTTTGTTAAGGGATAA+TGG + chr4_4:38644235-38644254 None:intergenic 25.0%
!! TGTTCTTTATTTGCTAAAGT+CGG - chr4_4:38644459-38644478 Msa0679990:intron 25.0%
! GAAGAAAGAAAATAATTGAG+TGG + chr4_4:38644744-38644763 None:intergenic 25.0%
!!! ATTTTAATGCCAATCTTTTC+AGG - chr4_4:38644927-38644946 Msa0679990:intron 25.0%
! TCTAGTTAAATTCAACAAGA+CGG + chr4_4:38645012-38645031 None:intergenic 25.0%
! ATTAAAGTCAAAGGGTTAAT+AGG - chr4_4:38645177-38645196 Msa0679990:intron 25.0%
!!! AACTAATTTTTTTTACAGGG+AGG + chr4_4:38645270-38645289 None:intergenic 25.0%
!!! TTTTTGTTTAGCCTATTAAG+GGG + chr4_4:38645302-38645321 None:intergenic 25.0%
!!! GTTTTTGTTTAGCCTATTAA+GGG + chr4_4:38645303-38645322 None:intergenic 25.0%
!! CTATTTGACTTTAGGTTAAT+AGG + chr4_4:38645476-38645495 None:intergenic 25.0%
! CTATTAACCTAAAGTCAAAT+AGG - chr4_4:38645474-38645493 Msa0679990:intron 25.0%
! ATTAACCTAAAGTCAAATAG+GGG - chr4_4:38645476-38645495 Msa0679990:intron 25.0%
! TTTCATGAATATTTGAGGAA+CGG + chr4_4:38645696-38645715 None:intergenic 25.0%
! AAAAAGAAGTCAAAGAAGTA+CGG - chr4_4:38645713-38645732 Msa0679990:intron 25.0%
!!! GTATTTTATCAATGACTTGT+TGG - chr4_4:38645969-38645988 Msa0679990:five_prime_UTR 25.0%
! TATAGAGACAATAAAGACTT+AGG - chr4_4:38646409-38646428 Msa0679990:five_prime_UTR 25.0%
! GTATGTGTATATTGAAAGAA+TGG - chr4_4:38646551-38646570 Msa0679990:five_prime_UTR 25.0%
! AAAAGTCTATTTAAGTCCAA+TGG - chr4_4:38646602-38646621 Msa0679990:five_prime_UTR 25.0%
!!! GGAATTTTTTCAACAAAAAG+AGG - chr4_4:38646749-38646768 Msa0679990:five_prime_UTR 25.0%
! TTAGTTTCTAATCAAGATCA+AGG + chr4_4:38646813-38646832 None:intergenic 25.0%
! TATTGTTATCTAGTGTTTGT+TGG + chr4_4:38646849-38646868 None:intergenic 25.0%
! ATGAACTTTCTTTCACTTAA+CGG - chr4_4:38643048-38643067 Msa0679990:three_prime_UTR 25.0%
!!! AAGCTCCTAATTTTAATTAG+AGG - chr4_4:38643365-38643384 Msa0679990:intron 25.0%
!! TTTATGCCTACAAATTTGTT+GGG - chr4_4:38643504-38643523 Msa0679990:intron 25.0%
!!! ATTATGCAACAACCTTTTTT+GGG + chr4_4:38643560-38643579 None:intergenic 25.0%
!!! AATTATGCAACAACCTTTTT+TGG + chr4_4:38643561-38643580 None:intergenic 25.0%
! CAAATAATATAGAAACTACC+AGG + chr4_4:38643587-38643606 None:intergenic 25.0%
!!! TAATTTTTTTAGGTGCTCAA+AGG + chr4_4:38643640-38643659 None:intergenic 25.0%
! ATTATACTTAATCATTGGCA+TGG - chr4_4:38643656-38643675 Msa0679990:intron 25.0%
! TACATCACTCACTAAAATTA+TGG + chr4_4:38643741-38643760 None:intergenic 25.0%
! TTGAAGGATAGAGAATTAAA+CGG - chr4_4:38643785-38643804 Msa0679990:CDS 25.0%
! CAAGAACTTGTGATTTAATA+TGG - chr4_4:38643819-38643838 Msa0679990:CDS 25.0%
!! ACTATTTTGTTAAGGGATAA+TGG + chr4_4:38644235-38644254 None:intergenic 25.0%
!! TGTTCTTTATTTGCTAAAGT+CGG - chr4_4:38644459-38644478 Msa0679990:intron 25.0%
! GAAGAAAGAAAATAATTGAG+TGG + chr4_4:38644744-38644763 None:intergenic 25.0%
!!! ATTTTAATGCCAATCTTTTC+AGG - chr4_4:38644927-38644946 Msa0679990:intron 25.0%
! TCTAGTTAAATTCAACAAGA+CGG + chr4_4:38645012-38645031 None:intergenic 25.0%
! ATTAAAGTCAAAGGGTTAAT+AGG - chr4_4:38645177-38645196 Msa0679990:intron 25.0%
!!! AACTAATTTTTTTTACAGGG+AGG + chr4_4:38645270-38645289 None:intergenic 25.0%
!!! TTTTTGTTTAGCCTATTAAG+GGG + chr4_4:38645302-38645321 None:intergenic 25.0%
!!! GTTTTTGTTTAGCCTATTAA+GGG + chr4_4:38645303-38645322 None:intergenic 25.0%
!! CTATTTGACTTTAGGTTAAT+AGG + chr4_4:38645476-38645495 None:intergenic 25.0%
! CTATTAACCTAAAGTCAAAT+AGG - chr4_4:38645474-38645493 Msa0679990:intron 25.0%
! ATTAACCTAAAGTCAAATAG+GGG - chr4_4:38645476-38645495 Msa0679990:intron 25.0%
! TTTCATGAATATTTGAGGAA+CGG + chr4_4:38645696-38645715 None:intergenic 25.0%
! AAAAAGAAGTCAAAGAAGTA+CGG - chr4_4:38645713-38645732 Msa0679990:intron 25.0%
!!! GTATTTTATCAATGACTTGT+TGG - chr4_4:38645969-38645988 Msa0679990:five_prime_UTR 25.0%
! TATAGAGACAATAAAGACTT+AGG - chr4_4:38646409-38646428 Msa0679990:five_prime_UTR 25.0%
! GTATGTGTATATTGAAAGAA+TGG - chr4_4:38646551-38646570 Msa0679990:five_prime_UTR 25.0%
! AAAAGTCTATTTAAGTCCAA+TGG - chr4_4:38646602-38646621 Msa0679990:five_prime_UTR 25.0%
!!! GGAATTTTTTCAACAAAAAG+AGG - chr4_4:38646749-38646768 Msa0679990:five_prime_UTR 25.0%
! TTAGTTTCTAATCAAGATCA+AGG + chr4_4:38646813-38646832 None:intergenic 25.0%
! TATTGTTATCTAGTGTTTGT+TGG + chr4_4:38646849-38646868 None:intergenic 25.0%
TATGTTAAAAAAAGGGCTTC+TGG - chr4_4:38643331-38643350 Msa0679990:CDS 30.0%
GCACTCCTCTAATTAAAATT+AGG + chr4_4:38643373-38643392 None:intergenic 30.0%
ATAAAGCAAATGTTAATGCG+AGG + chr4_4:38643489-38643508 None:intergenic 30.0%
CTTTATGCCTACAAATTTGT+TGG - chr4_4:38643503-38643522 Msa0679990:intron 30.0%
TCAAAGGATAGAAATAATGG+CGG + chr4_4:38643624-38643643 None:intergenic 30.0%
TGCTCAAAGGATAGAAATAA+TGG + chr4_4:38643627-38643646 None:intergenic 30.0%
! ATCCTATGTTTTCATGTCAT+TGG - chr4_4:38643680-38643699 Msa0679990:intron 30.0%
! TGTCTTGCAAACATTTTTGA+AGG - chr4_4:38643769-38643788 Msa0679990:CDS 30.0%
TTGTGATTTAATATGGCGAA+TGG - chr4_4:38643826-38643845 Msa0679990:CDS 30.0%
! TTCTATTTGTTGAGCATTGT+TGG + chr4_4:38643897-38643916 None:intergenic 30.0%
ATCATAGATACTAACAGTGA+TGG - chr4_4:38644073-38644092 Msa0679990:intron 30.0%
ACAATTCTGCACCAATAAAT+AGG - chr4_4:38644140-38644159 Msa0679990:intron 30.0%
AGAATTACTACTTCTCTCTT+TGG - chr4_4:38644581-38644600 Msa0679990:intron 30.0%
GAATTACTACTTCTCTCTTT+GGG - chr4_4:38644582-38644601 Msa0679990:intron 30.0%
!!! CTTGATAGTTTTTTCTGTAC+AGG - chr4_4:38644632-38644651 Msa0679990:intron 30.0%
ATGCAATAACAAACCTGAAA+AGG + chr4_4:38644978-38644997 None:intergenic 30.0%
! AACTTATCTGAAGTGATGTT+TGG + chr4_4:38645065-38645084 None:intergenic 30.0%
! TACAAATGCTAGTTTGTGAT+CGG + chr4_4:38645138-38645157 None:intergenic 30.0%
AAATTTACAGGGTGTAAAAC+CGG + chr4_4:38645231-38645250 None:intergenic 30.0%
!!! TTTTGATTTACCCCCTTAAT+AGG - chr4_4:38645288-38645307 Msa0679990:CDS 30.0%
!! TTTTGTTTAGCCTATTAAGG+GGG + chr4_4:38645301-38645320 None:intergenic 30.0%
!! CGTTTTTGTTTAGCCTATTA+AGG + chr4_4:38645304-38645323 None:intergenic 30.0%
!! TTTTTATTTACCCCCCTAAT+GGG + chr4_4:38645363-38645382 None:intergenic 30.0%
!!! TTTTTTATTTACCCCCCTAA+TGG + chr4_4:38645364-38645383 None:intergenic 30.0%
TTAACCTAAAGTCAAATAGG+GGG - chr4_4:38645477-38645496 Msa0679990:intron 30.0%
AAATATGTAGCTGTCAATCT+TGG - chr4_4:38645574-38645593 Msa0679990:CDS 30.0%
! TCAATCTTGGTTGCTTATTT+TGG - chr4_4:38645587-38645606 Msa0679990:CDS 30.0%
! TTTTCTCGAAAGAATCACTA+AGG + chr4_4:38645864-38645883 None:intergenic 30.0%
ATTCTTTCGAGAAAACAATC+AGG - chr4_4:38645869-38645888 Msa0679990:exon 30.0%
TTCTTTCGAGAAAACAATCA+GGG - chr4_4:38645870-38645889 Msa0679990:exon 30.0%
ACATATGTTTGATGTTTCCA+AGG + chr4_4:38646008-38646027 None:intergenic 30.0%
TCAAAAACTTCACTTTCTTG+AGG - chr4_4:38646029-38646048 Msa0679990:five_prime_UTR 30.0%
CAAAAACTTCACTTTCTTGA+GGG - chr4_4:38646030-38646049 Msa0679990:five_prime_UTR 30.0%
ATTGTTTGATCTTGATCCAA+CGG + chr4_4:38646112-38646131 None:intergenic 30.0%
AATTTCCAGAAGAATTCTGA+AGG - chr4_4:38646437-38646456 Msa0679990:five_prime_UTR 30.0%
ATGAGTATCATGTAATCATG+AGG - chr4_4:38646645-38646664 Msa0679990:five_prime_UTR 30.0%
TATGTTAAAAAAAGGGCTTC+TGG - chr4_4:38643331-38643350 Msa0679990:CDS 30.0%
GCACTCCTCTAATTAAAATT+AGG + chr4_4:38643373-38643392 None:intergenic 30.0%
ATAAAGCAAATGTTAATGCG+AGG + chr4_4:38643489-38643508 None:intergenic 30.0%
CTTTATGCCTACAAATTTGT+TGG - chr4_4:38643503-38643522 Msa0679990:intron 30.0%
TCAAAGGATAGAAATAATGG+CGG + chr4_4:38643624-38643643 None:intergenic 30.0%
TGCTCAAAGGATAGAAATAA+TGG + chr4_4:38643627-38643646 None:intergenic 30.0%
! ATCCTATGTTTTCATGTCAT+TGG - chr4_4:38643680-38643699 Msa0679990:intron 30.0%
! TGTCTTGCAAACATTTTTGA+AGG - chr4_4:38643769-38643788 Msa0679990:CDS 30.0%
TTGTGATTTAATATGGCGAA+TGG - chr4_4:38643826-38643845 Msa0679990:CDS 30.0%
! TTCTATTTGTTGAGCATTGT+TGG + chr4_4:38643897-38643916 None:intergenic 30.0%
ATCATAGATACTAACAGTGA+TGG - chr4_4:38644073-38644092 Msa0679990:intron 30.0%
ACAATTCTGCACCAATAAAT+AGG - chr4_4:38644140-38644159 Msa0679990:intron 30.0%
AGAATTACTACTTCTCTCTT+TGG - chr4_4:38644581-38644600 Msa0679990:intron 30.0%
GAATTACTACTTCTCTCTTT+GGG - chr4_4:38644582-38644601 Msa0679990:intron 30.0%
!!! CTTGATAGTTTTTTCTGTAC+AGG - chr4_4:38644632-38644651 Msa0679990:intron 30.0%
ATGCAATAACAAACCTGAAA+AGG + chr4_4:38644978-38644997 None:intergenic 30.0%
! AACTTATCTGAAGTGATGTT+TGG + chr4_4:38645065-38645084 None:intergenic 30.0%
! TACAAATGCTAGTTTGTGAT+CGG + chr4_4:38645138-38645157 None:intergenic 30.0%
AAATTTACAGGGTGTAAAAC+CGG + chr4_4:38645231-38645250 None:intergenic 30.0%
!!! TTTTGATTTACCCCCTTAAT+AGG - chr4_4:38645288-38645307 Msa0679990:CDS 30.0%
!! TTTTGTTTAGCCTATTAAGG+GGG + chr4_4:38645301-38645320 None:intergenic 30.0%
!! CGTTTTTGTTTAGCCTATTA+AGG + chr4_4:38645304-38645323 None:intergenic 30.0%
!! TTTTTATTTACCCCCCTAAT+GGG + chr4_4:38645363-38645382 None:intergenic 30.0%
!!! TTTTTTATTTACCCCCCTAA+TGG + chr4_4:38645364-38645383 None:intergenic 30.0%
TTAACCTAAAGTCAAATAGG+GGG - chr4_4:38645477-38645496 Msa0679990:intron 30.0%
AAATATGTAGCTGTCAATCT+TGG - chr4_4:38645574-38645593 Msa0679990:CDS 30.0%
! TCAATCTTGGTTGCTTATTT+TGG - chr4_4:38645587-38645606 Msa0679990:CDS 30.0%
! TTTTCTCGAAAGAATCACTA+AGG + chr4_4:38645864-38645883 None:intergenic 30.0%
ATTCTTTCGAGAAAACAATC+AGG - chr4_4:38645869-38645888 Msa0679990:exon 30.0%
TTCTTTCGAGAAAACAATCA+GGG - chr4_4:38645870-38645889 Msa0679990:exon 30.0%
ACATATGTTTGATGTTTCCA+AGG + chr4_4:38646008-38646027 None:intergenic 30.0%
TCAAAAACTTCACTTTCTTG+AGG - chr4_4:38646029-38646048 Msa0679990:five_prime_UTR 30.0%
CAAAAACTTCACTTTCTTGA+GGG - chr4_4:38646030-38646049 Msa0679990:five_prime_UTR 30.0%
ATTGTTTGATCTTGATCCAA+CGG + chr4_4:38646112-38646131 None:intergenic 30.0%
AATTTCCAGAAGAATTCTGA+AGG - chr4_4:38646437-38646456 Msa0679990:five_prime_UTR 30.0%
ATGAGTATCATGTAATCATG+AGG - chr4_4:38646645-38646664 Msa0679990:five_prime_UTR 30.0%
TTCCATAGCCAATTTGTGAA+GGG - chr4_4:38642866-38642885 Msa0679990:three_prime_UTR 35.0%
GCTGCAATAGTGTGTTTATA+TGG - chr4_4:38642913-38642932 Msa0679990:three_prime_UTR 35.0%
GCAATAGTGTGTTTATATGG+CGG - chr4_4:38642916-38642935 Msa0679990:three_prime_UTR 35.0%
!!! ATGCAAAAGCCTTGTTTTTG+GGG + chr4_4:38643170-38643189 None:intergenic 35.0%
!!! CATGCAAAAGCCTTGTTTTT+GGG + chr4_4:38643171-38643190 None:intergenic 35.0%
!!! TCATGCAAAAGCCTTGTTTT+TGG + chr4_4:38643172-38643191 None:intergenic 35.0%
! AAAAACAAGGCTTTTGCATG+AGG - chr4_4:38643171-38643190 Msa0679990:three_prime_UTR 35.0%
TGCCAATGACATGAAAACAT+AGG + chr4_4:38643685-38643704 None:intergenic 35.0%
TTTAGTGAGTGATGTAGATG+AGG - chr4_4:38643745-38643764 Msa0679990:CDS 35.0%
! CGAATGGATTTCAGAAATTC+TGG - chr4_4:38643842-38643861 Msa0679990:CDS 35.0%
CAATGCTCAACAAATAGAAC+AGG - chr4_4:38643898-38643917 Msa0679990:intron 35.0%
! TGTGTTTGGTTTCTTTGATC+AGG - chr4_4:38644013-38644032 Msa0679990:CDS 35.0%
ATAGATACTAACAGTGATGG+CGG - chr4_4:38644076-38644095 Msa0679990:intron 35.0%
GCAGTCATCTTCCTATTTAT+TGG + chr4_4:38644154-38644173 None:intergenic 35.0%
AAATAGGAAGATGACTGCAA+AGG - chr4_4:38644156-38644175 Msa0679990:intron 35.0%
!! AAGAGAGGTATCATACAGAT+TGG + chr4_4:38644430-38644449 None:intergenic 35.0%
! TGGTTTAACTTTCACCATCA+TGG - chr4_4:38644813-38644832 Msa0679990:intron 35.0%
! ATTTGGAACTTACACCATGA+TGG + chr4_4:38644830-38644849 None:intergenic 35.0%
TTATAGCAGCCTGAAAAGAT+TGG + chr4_4:38644939-38644958 None:intergenic 35.0%
CTGCTATAAGTTATGCGATT+GGG - chr4_4:38644950-38644969 Msa0679990:intron 35.0%
TGCTATAAGTTATGCGATTG+GGG - chr4_4:38644951-38644970 Msa0679990:intron 35.0%
GAAATGACCTATATTACAGG+GGG + chr4_4:38645443-38645462 None:intergenic 35.0%
GGAAATGACCTATATTACAG+GGG + chr4_4:38645442-38645461 None:intergenic 35.0%
CGGAAATGACCTATATTACA+GGG + chr4_4:38645441-38645460 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG - chr4_4:38645209-38645228 Msa0679990:intron 35.0%
CCTGTAATATAGGTCATTTC+CGG + chr4_4:38645209-38645228 None:intergenic 35.0%
CGGAAATGACCTATATTACA+GGG - chr4_4:38645441-38645460 Msa0679990:intron 35.0%
GGAAATGACCTATATTACAG+GGG - chr4_4:38645442-38645461 Msa0679990:intron 35.0%
GAAATGACCTATATTACAGG+GGG - chr4_4:38645443-38645462 Msa0679990:intron 35.0%
AAATGACCTATATTACAGGG+GGG - chr4_4:38645444-38645463 Msa0679990:intron 35.0%
AATTGACAATTGCTCTCTGT+GGG - chr4_4:38645538-38645557 Msa0679990:intron 35.0%
TAACAACAGAGAACACTAAC+TGG + chr4_4:38645774-38645793 None:intergenic 35.0%
!! CATTCTCTTGTCACTTGTTT+TGG - chr4_4:38645795-38645814 Msa0679990:intron 35.0%
TTCGCTTCTTATACCAATTC+TGG + chr4_4:38645839-38645858 None:intergenic 35.0%
TCTTTCGAGAAAACAATCAG+GGG - chr4_4:38645871-38645890 Msa0679990:exon 35.0%
!!! CAATGACTTGTTGGATTTTC+AGG - chr4_4:38645978-38645997 Msa0679990:five_prime_UTR 35.0%
!!! TTGGATTTTCAGGTAAACCT+TGG - chr4_4:38645988-38646007 Msa0679990:five_prime_UTR 35.0%
GTCGGTCATTGGATAAATAT+CGG + chr4_4:38646202-38646221 None:intergenic 35.0%
TCAACTATCGTTTAACACGT+TGG - chr4_4:38646298-38646317 Msa0679990:five_prime_UTR 35.0%
ATGTAAGTAGTGCTTAGTTC+CGG + chr4_4:38646504-38646523 None:intergenic 35.0%
! AGTTCTAACTCATATGCCAT+TGG + chr4_4:38646621-38646640 None:intergenic 35.0%
! TTTCAACAAAAAGAGGCATG+AGG - chr4_4:38646756-38646775 Msa0679990:five_prime_UTR 35.0%
! TGTTATCTAGTGTTTGTTGG+AGG + chr4_4:38646846-38646865 None:intergenic 35.0%
TTCCATAGCCAATTTGTGAA+GGG - chr4_4:38642866-38642885 Msa0679990:three_prime_UTR 35.0%
GCTGCAATAGTGTGTTTATA+TGG - chr4_4:38642913-38642932 Msa0679990:three_prime_UTR 35.0%
GCAATAGTGTGTTTATATGG+CGG - chr4_4:38642916-38642935 Msa0679990:three_prime_UTR 35.0%
!!! ATGCAAAAGCCTTGTTTTTG+GGG + chr4_4:38643170-38643189 None:intergenic 35.0%
!!! CATGCAAAAGCCTTGTTTTT+GGG + chr4_4:38643171-38643190 None:intergenic 35.0%
!!! TCATGCAAAAGCCTTGTTTT+TGG + chr4_4:38643172-38643191 None:intergenic 35.0%
! AAAAACAAGGCTTTTGCATG+AGG - chr4_4:38643171-38643190 Msa0679990:three_prime_UTR 35.0%
TGCCAATGACATGAAAACAT+AGG + chr4_4:38643685-38643704 None:intergenic 35.0%
TTTAGTGAGTGATGTAGATG+AGG - chr4_4:38643745-38643764 Msa0679990:CDS 35.0%
! CGAATGGATTTCAGAAATTC+TGG - chr4_4:38643842-38643861 Msa0679990:CDS 35.0%
CAATGCTCAACAAATAGAAC+AGG - chr4_4:38643898-38643917 Msa0679990:intron 35.0%
! TGTGTTTGGTTTCTTTGATC+AGG - chr4_4:38644013-38644032 Msa0679990:CDS 35.0%
ATAGATACTAACAGTGATGG+CGG - chr4_4:38644076-38644095 Msa0679990:intron 35.0%
GCAGTCATCTTCCTATTTAT+TGG + chr4_4:38644154-38644173 None:intergenic 35.0%
AAATAGGAAGATGACTGCAA+AGG - chr4_4:38644156-38644175 Msa0679990:intron 35.0%
!! AAGAGAGGTATCATACAGAT+TGG + chr4_4:38644430-38644449 None:intergenic 35.0%
! TGGTTTAACTTTCACCATCA+TGG - chr4_4:38644813-38644832 Msa0679990:intron 35.0%
! ATTTGGAACTTACACCATGA+TGG + chr4_4:38644830-38644849 None:intergenic 35.0%
TTATAGCAGCCTGAAAAGAT+TGG + chr4_4:38644939-38644958 None:intergenic 35.0%
CTGCTATAAGTTATGCGATT+GGG - chr4_4:38644950-38644969 Msa0679990:intron 35.0%
TGCTATAAGTTATGCGATTG+GGG - chr4_4:38644951-38644970 Msa0679990:intron 35.0%
GAAATGACCTATATTACAGG+GGG + chr4_4:38645443-38645462 None:intergenic 35.0%
GGAAATGACCTATATTACAG+GGG + chr4_4:38645442-38645461 None:intergenic 35.0%
CGGAAATGACCTATATTACA+GGG + chr4_4:38645441-38645460 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG - chr4_4:38645209-38645228 Msa0679990:intron 35.0%
CCTGTAATATAGGTCATTTC+CGG + chr4_4:38645209-38645228 None:intergenic 35.0%
CGGAAATGACCTATATTACA+GGG - chr4_4:38645441-38645460 Msa0679990:intron 35.0%
GGAAATGACCTATATTACAG+GGG - chr4_4:38645442-38645461 Msa0679990:intron 35.0%
GAAATGACCTATATTACAGG+GGG - chr4_4:38645443-38645462 Msa0679990:intron 35.0%
AAATGACCTATATTACAGGG+GGG - chr4_4:38645444-38645463 Msa0679990:intron 35.0%
AATTGACAATTGCTCTCTGT+GGG - chr4_4:38645538-38645557 Msa0679990:intron 35.0%
TAACAACAGAGAACACTAAC+TGG + chr4_4:38645774-38645793 None:intergenic 35.0%
!! CATTCTCTTGTCACTTGTTT+TGG - chr4_4:38645795-38645814 Msa0679990:intron 35.0%
TTCGCTTCTTATACCAATTC+TGG + chr4_4:38645839-38645858 None:intergenic 35.0%
TCTTTCGAGAAAACAATCAG+GGG - chr4_4:38645871-38645890 Msa0679990:exon 35.0%
!!! CAATGACTTGTTGGATTTTC+AGG - chr4_4:38645978-38645997 Msa0679990:five_prime_UTR 35.0%
!!! TTGGATTTTCAGGTAAACCT+TGG - chr4_4:38645988-38646007 Msa0679990:five_prime_UTR 35.0%
GTCGGTCATTGGATAAATAT+CGG + chr4_4:38646202-38646221 None:intergenic 35.0%
TCAACTATCGTTTAACACGT+TGG - chr4_4:38646298-38646317 Msa0679990:five_prime_UTR 35.0%
ATGTAAGTAGTGCTTAGTTC+CGG + chr4_4:38646504-38646523 None:intergenic 35.0%
! AGTTCTAACTCATATGCCAT+TGG + chr4_4:38646621-38646640 None:intergenic 35.0%
! TTTCAACAAAAAGAGGCATG+AGG - chr4_4:38646756-38646775 Msa0679990:five_prime_UTR 35.0%
! TGTTATCTAGTGTTTGTTGG+AGG + chr4_4:38646846-38646865 None:intergenic 35.0%
! ACACCATTCCATTTTCACCT+TGG + chr4_4:38642827-38642846 None:intergenic 40.0%
AAGGTGAAAATGGAATGGTG+TGG - chr4_4:38642826-38642845 Msa0679990:three_prime_UTR 40.0%
TCACAAATTGGCTATGGAAG+TGG + chr4_4:38642865-38642884 None:intergenic 40.0%
CTTCCATAGCCAATTTGTGA+AGG - chr4_4:38642865-38642884 Msa0679990:three_prime_UTR 40.0%
ATCCCTTCACAAATTGGCTA+TGG + chr4_4:38642871-38642890 None:intergenic 40.0%
AAACACACTATTGCAGCCTA+TGG + chr4_4:38642910-38642929 None:intergenic 40.0%
!! GTGTTTATATGGCGGATTGT+TGG - chr4_4:38642924-38642943 Msa0679990:three_prime_UTR 40.0%
TAAGAATGCAGTGTTGTCGA+TGG + chr4_4:38642957-38642976 None:intergenic 40.0%
TCACTTAACGGCTTAAGCTT+TGG - chr4_4:38643060-38643079 Msa0679990:three_prime_UTR 40.0%
CACTTAACGGCTTAAGCTTT+GGG - chr4_4:38643061-38643080 Msa0679990:three_prime_UTR 40.0%
ACTTAACGGCTTAAGCTTTG+GGG - chr4_4:38643062-38643081 Msa0679990:three_prime_UTR 40.0%
TCTCTTTGACCGAGTAATCA+AGG - chr4_4:38643112-38643131 Msa0679990:three_prime_UTR 40.0%
TTAGCACACAATAGCATTGC+AGG - chr4_4:38643216-38643235 Msa0679990:intron 40.0%
TAGCACACAATAGCATTGCA+GGG - chr4_4:38643217-38643236 Msa0679990:intron 40.0%
TACTAGCTCAAAGGTTGGAT+CGG + chr4_4:38643243-38643262 None:intergenic 40.0%
TGCTTTACTAGCTCAAAGGT+TGG + chr4_4:38643248-38643267 None:intergenic 40.0%
ACCTTTGAGCTAGTAAAGCA+AGG - chr4_4:38643248-38643267 Msa0679990:exon 40.0%
CCTTTGAGCTAGTAAAGCAA+GGG - chr4_4:38643249-38643268 Msa0679990:exon 40.0%
AAAAAGGGCTTCTGGTCTAA+TGG - chr4_4:38643339-38643358 Msa0679990:CDS 40.0%
!!! CCTTTTTTGGGTTTGAAGAG+TGG + chr4_4:38643548-38643567 None:intergenic 40.0%
CCACTCTTCAAACCCAAAAA+AGG - chr4_4:38643545-38643564 Msa0679990:intron 40.0%
GGTTGTTGCATAATTCAACC+TGG - chr4_4:38643566-38643585 Msa0679990:intron 40.0%
! TGTTTCTGCTGAGAGCTAAT+TGG - chr4_4:38643708-38643727 Msa0679990:intron 40.0%
!! AGTATTGAGCGTGTGAGTTT+TGG - chr4_4:38643954-38643973 Msa0679990:intron 40.0%
! AACTTTCAAGTACCCAAGAG+TGG - chr4_4:38644107-38644126 Msa0679990:intron 40.0%
AGTACCCAAGAGTGGTTATT+AGG - chr4_4:38644115-38644134 Msa0679990:intron 40.0%
GTCACCTAATAACCACTCTT+GGG + chr4_4:38644122-38644141 None:intergenic 40.0%
TGTCACCTAATAACCACTCT+TGG + chr4_4:38644123-38644142 None:intergenic 40.0%
AGAACATACTGAGTCAAGAG+AGG + chr4_4:38644445-38644464 None:intergenic 40.0%
ATCAAAACATACCTGCCTTG+AGG + chr4_4:38644494-38644513 None:intergenic 40.0%
CTACTTCTCTCTTTGGGTAT+TGG - chr4_4:38644588-38644607 Msa0679990:intron 40.0%
!! TCTCTCTTTGGGTATTGGAT+TGG - chr4_4:38644593-38644612 Msa0679990:intron 40.0%
!! CTCTCTTTGGGTATTGGATT+GGG - chr4_4:38644594-38644613 Msa0679990:intron 40.0%
! TAATAGTGAGTTGACGAGAC+TGG + chr4_4:38644688-38644707 None:intergenic 40.0%
ACGCACTTAAACAACATGTG+TGG + chr4_4:38644887-38644906 None:intergenic 40.0%
GCTGCTATAAGTTATGCGAT+TGG - chr4_4:38644949-38644968 Msa0679990:intron 40.0%
GTCTTTACCCCCTGTAATAT+AGG - chr4_4:38645199-38645218 Msa0679990:intron 40.0%
CCGGAAATGACCTATATTAC+AGG + chr4_4:38645440-38645459 None:intergenic 40.0%
!! TGGTTTTTGTTTGGCCCATT+AGG - chr4_4:38645346-38645365 Msa0679990:intron 40.0%
!! GGTTTTTGTTTGGCCCATTA+GGG - chr4_4:38645347-38645366 Msa0679990:intron 40.0%
!! GTTTTTGTTTGGCCCATTAG+GGG - chr4_4:38645348-38645367 Msa0679990:intron 40.0%
!! TTTTTGTTTGGCCCATTAGG+GGG - chr4_4:38645349-38645368 Msa0679990:intron 40.0%
! AATTTTACAGGGGGGAAAAC+CGG - chr4_4:38645421-38645440 Msa0679990:intron 40.0%
CCGGAAATGACCTATATTAC+AGG - chr4_4:38645440-38645459 Msa0679990:intron 40.0%
TCTTTACCCCCCTGTAATAT+AGG + chr4_4:38645453-38645472 None:intergenic 40.0%
ACAACATTACAGTTGTGCCA+AGG + chr4_4:38645505-38645524 None:intergenic 40.0%
GAATTGACAATTGCTCTCTG+TGG - chr4_4:38645537-38645556 Msa0679990:intron 40.0%
CATGTTGATACAAGAGCTGA+AGG + chr4_4:38645652-38645671 None:intergenic 40.0%
TATTTGAGGAACGGTTTCAC+TGG + chr4_4:38645687-38645706 None:intergenic 40.0%
GTATAGCACTTTCATCTCCA+AGG - chr4_4:38645899-38645918 Msa0679990:five_prime_UTR 40.0%
AAAGTCCATAAATTGCTGCC+GGG + chr4_4:38645933-38645952 None:intergenic 40.0%
CAAAGTCCATAAATTGCTGC+CGG + chr4_4:38645934-38645953 None:intergenic 40.0%
GGCAGCAATTTATGGACTTT+GGG - chr4_4:38645933-38645952 Msa0679990:five_prime_UTR 40.0%
TTATGCAGTCAGAACATCGT+CGG + chr4_4:38646220-38646239 None:intergenic 40.0%
TGTTCTGACTGCATAAATGC+AGG - chr4_4:38646224-38646243 Msa0679990:five_prime_UTR 40.0%
GTAGACAAACATCCCAAACA+TGG + chr4_4:38646365-38646384 None:intergenic 40.0%
! TCCAGAAGAATTCTGAAGGA+AGG - chr4_4:38646441-38646460 Msa0679990:five_prime_UTR 40.0%
TCATGTAATCATGAGGTGTG+AGG - chr4_4:38646652-38646671 Msa0679990:five_prime_UTR 40.0%
CATGTAATCATGAGGTGTGA+GGG - chr4_4:38646653-38646672 Msa0679990:five_prime_UTR 40.0%
! ACACCATTCCATTTTCACCT+TGG + chr4_4:38642827-38642846 None:intergenic 40.0%
AAGGTGAAAATGGAATGGTG+TGG - chr4_4:38642826-38642845 Msa0679990:three_prime_UTR 40.0%
TCACAAATTGGCTATGGAAG+TGG + chr4_4:38642865-38642884 None:intergenic 40.0%
CTTCCATAGCCAATTTGTGA+AGG - chr4_4:38642865-38642884 Msa0679990:three_prime_UTR 40.0%
ATCCCTTCACAAATTGGCTA+TGG + chr4_4:38642871-38642890 None:intergenic 40.0%
AAACACACTATTGCAGCCTA+TGG + chr4_4:38642910-38642929 None:intergenic 40.0%
!! GTGTTTATATGGCGGATTGT+TGG - chr4_4:38642924-38642943 Msa0679990:three_prime_UTR 40.0%
TAAGAATGCAGTGTTGTCGA+TGG + chr4_4:38642957-38642976 None:intergenic 40.0%
TCACTTAACGGCTTAAGCTT+TGG - chr4_4:38643060-38643079 Msa0679990:three_prime_UTR 40.0%
CACTTAACGGCTTAAGCTTT+GGG - chr4_4:38643061-38643080 Msa0679990:three_prime_UTR 40.0%
ACTTAACGGCTTAAGCTTTG+GGG - chr4_4:38643062-38643081 Msa0679990:three_prime_UTR 40.0%
TCTCTTTGACCGAGTAATCA+AGG - chr4_4:38643112-38643131 Msa0679990:three_prime_UTR 40.0%
TTAGCACACAATAGCATTGC+AGG - chr4_4:38643216-38643235 Msa0679990:intron 40.0%
TAGCACACAATAGCATTGCA+GGG - chr4_4:38643217-38643236 Msa0679990:intron 40.0%
TACTAGCTCAAAGGTTGGAT+CGG + chr4_4:38643243-38643262 None:intergenic 40.0%
TGCTTTACTAGCTCAAAGGT+TGG + chr4_4:38643248-38643267 None:intergenic 40.0%
ACCTTTGAGCTAGTAAAGCA+AGG - chr4_4:38643248-38643267 Msa0679990:exon 40.0%
CCTTTGAGCTAGTAAAGCAA+GGG - chr4_4:38643249-38643268 Msa0679990:exon 40.0%
AAAAAGGGCTTCTGGTCTAA+TGG - chr4_4:38643339-38643358 Msa0679990:CDS 40.0%
!!! CCTTTTTTGGGTTTGAAGAG+TGG + chr4_4:38643548-38643567 None:intergenic 40.0%
CCACTCTTCAAACCCAAAAA+AGG - chr4_4:38643545-38643564 Msa0679990:intron 40.0%
GGTTGTTGCATAATTCAACC+TGG - chr4_4:38643566-38643585 Msa0679990:intron 40.0%
! TGTTTCTGCTGAGAGCTAAT+TGG - chr4_4:38643708-38643727 Msa0679990:intron 40.0%
!! AGTATTGAGCGTGTGAGTTT+TGG - chr4_4:38643954-38643973 Msa0679990:intron 40.0%
! AACTTTCAAGTACCCAAGAG+TGG - chr4_4:38644107-38644126 Msa0679990:intron 40.0%
AGTACCCAAGAGTGGTTATT+AGG - chr4_4:38644115-38644134 Msa0679990:intron 40.0%
GTCACCTAATAACCACTCTT+GGG + chr4_4:38644122-38644141 None:intergenic 40.0%
TGTCACCTAATAACCACTCT+TGG + chr4_4:38644123-38644142 None:intergenic 40.0%
AGAACATACTGAGTCAAGAG+AGG + chr4_4:38644445-38644464 None:intergenic 40.0%
ATCAAAACATACCTGCCTTG+AGG + chr4_4:38644494-38644513 None:intergenic 40.0%
CTACTTCTCTCTTTGGGTAT+TGG - chr4_4:38644588-38644607 Msa0679990:intron 40.0%
!! TCTCTCTTTGGGTATTGGAT+TGG - chr4_4:38644593-38644612 Msa0679990:intron 40.0%
!! CTCTCTTTGGGTATTGGATT+GGG - chr4_4:38644594-38644613 Msa0679990:intron 40.0%
! TAATAGTGAGTTGACGAGAC+TGG + chr4_4:38644688-38644707 None:intergenic 40.0%
ACGCACTTAAACAACATGTG+TGG + chr4_4:38644887-38644906 None:intergenic 40.0%
GCTGCTATAAGTTATGCGAT+TGG - chr4_4:38644949-38644968 Msa0679990:intron 40.0%
GTCTTTACCCCCTGTAATAT+AGG - chr4_4:38645199-38645218 Msa0679990:intron 40.0%
CCGGAAATGACCTATATTAC+AGG + chr4_4:38645440-38645459 None:intergenic 40.0%
!! TGGTTTTTGTTTGGCCCATT+AGG - chr4_4:38645346-38645365 Msa0679990:intron 40.0%
!! GGTTTTTGTTTGGCCCATTA+GGG - chr4_4:38645347-38645366 Msa0679990:intron 40.0%
!! GTTTTTGTTTGGCCCATTAG+GGG - chr4_4:38645348-38645367 Msa0679990:intron 40.0%
!! TTTTTGTTTGGCCCATTAGG+GGG - chr4_4:38645349-38645368 Msa0679990:intron 40.0%
! AATTTTACAGGGGGGAAAAC+CGG - chr4_4:38645421-38645440 Msa0679990:intron 40.0%
CCGGAAATGACCTATATTAC+AGG - chr4_4:38645440-38645459 Msa0679990:intron 40.0%
TCTTTACCCCCCTGTAATAT+AGG + chr4_4:38645453-38645472 None:intergenic 40.0%
ACAACATTACAGTTGTGCCA+AGG + chr4_4:38645505-38645524 None:intergenic 40.0%
GAATTGACAATTGCTCTCTG+TGG - chr4_4:38645537-38645556 Msa0679990:intron 40.0%
CATGTTGATACAAGAGCTGA+AGG + chr4_4:38645652-38645671 None:intergenic 40.0%
TATTTGAGGAACGGTTTCAC+TGG + chr4_4:38645687-38645706 None:intergenic 40.0%
GTATAGCACTTTCATCTCCA+AGG - chr4_4:38645899-38645918 Msa0679990:five_prime_UTR 40.0%
AAAGTCCATAAATTGCTGCC+GGG + chr4_4:38645933-38645952 None:intergenic 40.0%
CAAAGTCCATAAATTGCTGC+CGG + chr4_4:38645934-38645953 None:intergenic 40.0%
GGCAGCAATTTATGGACTTT+GGG - chr4_4:38645933-38645952 Msa0679990:five_prime_UTR 40.0%
TTATGCAGTCAGAACATCGT+CGG + chr4_4:38646220-38646239 None:intergenic 40.0%
TGTTCTGACTGCATAAATGC+AGG - chr4_4:38646224-38646243 Msa0679990:five_prime_UTR 40.0%
GTAGACAAACATCCCAAACA+TGG + chr4_4:38646365-38646384 None:intergenic 40.0%
! TCCAGAAGAATTCTGAAGGA+AGG - chr4_4:38646441-38646460 Msa0679990:five_prime_UTR 40.0%
TCATGTAATCATGAGGTGTG+AGG - chr4_4:38646652-38646671 Msa0679990:five_prime_UTR 40.0%
CATGTAATCATGAGGTGTGA+GGG - chr4_4:38646653-38646672 Msa0679990:five_prime_UTR 40.0%
CTGCCAAGGTGAAAATGGAA+TGG - chr4_4:38642821-38642840 Msa0679990:three_prime_UTR 45.0%
GTGAAAATGGAATGGTGTGG+CGG - chr4_4:38642829-38642848 Msa0679990:three_prime_UTR 45.0%
GCAGGAATCCCTTCACAAAT+TGG + chr4_4:38642877-38642896 None:intergenic 45.0%
GCTCAGCTACCTTGATTACT+CGG + chr4_4:38643124-38643143 None:intergenic 45.0%
! AACAAGGCTTTTGCATGAGG+TGG - chr4_4:38643174-38643193 Msa0679990:three_prime_UTR 45.0%
CCCTTGCTTTACTAGCTCAA+AGG + chr4_4:38643252-38643271 None:intergenic 45.0%
!! TGCCTACAAATTTGTTGGGC+CGG - chr4_4:38643508-38643527 Msa0679990:intron 45.0%
CACAGAATTCGCAACTGGAT+CGG + chr4_4:38643997-38644016 None:intergenic 45.0%
CCAAACACAGAATTCGCAAC+TGG + chr4_4:38644002-38644021 None:intergenic 45.0%
CCAGTTGCGAATTCTGTGTT+TGG - chr4_4:38643999-38644018 Msa0679990:CDS 45.0%
GGAAGATGACTGCAAAGGTA+TGG - chr4_4:38644161-38644180 Msa0679990:intron 45.0%
TCAGTCTTGCTCTGTTGTCT+TGG + chr4_4:38644385-38644404 None:intergenic 45.0%
AGTCGGTAACACTTACCTCA+AGG - chr4_4:38644476-38644495 Msa0679990:intron 45.0%
! GGTATTGGATTGGGTTGTAG+CGG - chr4_4:38644603-38644622 Msa0679990:intron 45.0%
!! TTTTGTTTGGCCCATTAGGG+GGG - chr4_4:38645350-38645369 Msa0679990:intron 45.0%
GAGAAAACAATCAGGGGTAG+TGG - chr4_4:38645877-38645896 Msa0679990:five_prime_UTR 45.0%
CGGCAGCAATTTATGGACTT+TGG - chr4_4:38645932-38645951 Msa0679990:five_prime_UTR 45.0%
! AGTAAAGCGCTCTCAAGAGA+GGG + chr4_4:38646276-38646295 None:intergenic 45.0%
! TAGTAAAGCGCTCTCAAGAG+AGG + chr4_4:38646277-38646296 None:intergenic 45.0%
ACAAACATCCCAAACATGGC+TGG + chr4_4:38646361-38646380 None:intergenic 45.0%
GCCTTCCTTCAGAATTCTTC+TGG + chr4_4:38646445-38646464 None:intergenic 45.0%
! ATTCTGAAGGAAGGCTGAAG+TGG - chr4_4:38646450-38646469 Msa0679990:five_prime_UTR 45.0%
GGCTGAAGTGGCTGAAATAT+TGG - chr4_4:38646462-38646481 Msa0679990:five_prime_UTR 45.0%
CTGCCAAGGTGAAAATGGAA+TGG - chr4_4:38642821-38642840 Msa0679990:three_prime_UTR 45.0%
GTGAAAATGGAATGGTGTGG+CGG - chr4_4:38642829-38642848 Msa0679990:three_prime_UTR 45.0%
GCAGGAATCCCTTCACAAAT+TGG + chr4_4:38642877-38642896 None:intergenic 45.0%
GCTCAGCTACCTTGATTACT+CGG + chr4_4:38643124-38643143 None:intergenic 45.0%
! AACAAGGCTTTTGCATGAGG+TGG - chr4_4:38643174-38643193 Msa0679990:three_prime_UTR 45.0%
CCCTTGCTTTACTAGCTCAA+AGG + chr4_4:38643252-38643271 None:intergenic 45.0%
!! TGCCTACAAATTTGTTGGGC+CGG - chr4_4:38643508-38643527 Msa0679990:intron 45.0%
CACAGAATTCGCAACTGGAT+CGG + chr4_4:38643997-38644016 None:intergenic 45.0%
CCAAACACAGAATTCGCAAC+TGG + chr4_4:38644002-38644021 None:intergenic 45.0%
CCAGTTGCGAATTCTGTGTT+TGG - chr4_4:38643999-38644018 Msa0679990:CDS 45.0%
GGAAGATGACTGCAAAGGTA+TGG - chr4_4:38644161-38644180 Msa0679990:intron 45.0%
TCAGTCTTGCTCTGTTGTCT+TGG + chr4_4:38644385-38644404 None:intergenic 45.0%
AGTCGGTAACACTTACCTCA+AGG - chr4_4:38644476-38644495 Msa0679990:intron 45.0%
! GGTATTGGATTGGGTTGTAG+CGG - chr4_4:38644603-38644622 Msa0679990:intron 45.0%
!! TTTTGTTTGGCCCATTAGGG+GGG - chr4_4:38645350-38645369 Msa0679990:intron 45.0%
GAGAAAACAATCAGGGGTAG+TGG - chr4_4:38645877-38645896 Msa0679990:five_prime_UTR 45.0%
CGGCAGCAATTTATGGACTT+TGG - chr4_4:38645932-38645951 Msa0679990:five_prime_UTR 45.0%
! AGTAAAGCGCTCTCAAGAGA+GGG + chr4_4:38646276-38646295 None:intergenic 45.0%
! TAGTAAAGCGCTCTCAAGAG+AGG + chr4_4:38646277-38646296 None:intergenic 45.0%
ACAAACATCCCAAACATGGC+TGG + chr4_4:38646361-38646380 None:intergenic 45.0%
GCCTTCCTTCAGAATTCTTC+TGG + chr4_4:38646445-38646464 None:intergenic 45.0%
! ATTCTGAAGGAAGGCTGAAG+TGG - chr4_4:38646450-38646469 Msa0679990:five_prime_UTR 45.0%
GGCTGAAGTGGCTGAAATAT+TGG - chr4_4:38646462-38646481 Msa0679990:five_prime_UTR 45.0%
!! AATTTCTTAAAAAAAAAAAT+TGG - chr4_4:38645326-38645345 Msa0679990:intron 5.0%
!!! AAAAAAAATATATATTTTAC+AGG - chr4_4:38645378-38645397 Msa0679990:intron 5.0%
!!! AAAAAAATATATATTTTACA+GGG - chr4_4:38645379-38645398 Msa0679990:intron 5.0%
!! AATTTCTTAAAAAAAAAAAT+TGG - chr4_4:38645326-38645345 Msa0679990:intron 5.0%
!!! AAAAAAAATATATATTTTAC+AGG - chr4_4:38645378-38645397 Msa0679990:intron 5.0%
!!! AAAAAAATATATATTTTACA+GGG - chr4_4:38645379-38645398 Msa0679990:intron 5.0%
CATGGCTGCCAAGGTGAAAA+TGG - chr4_4:38642816-38642835 Msa0679990:three_prime_UTR 50.0%
TTGTGAAGGGATTCCTGCCA+TGG - chr4_4:38642879-38642898 Msa0679990:three_prime_UTR 50.0%
GAATGCAGTGTTGTCGATGG+CGG + chr4_4:38642954-38642973 None:intergenic 50.0%
!! GCTTAAGCTTTGGGGAGAAC+TGG - chr4_4:38643070-38643089 Msa0679990:three_prime_UTR 50.0%
CACCTCAAGCCCCAAAAACA+AGG - chr4_4:38643158-38643177 Msa0679990:three_prime_UTR 50.0%
!!! AGCCTTGTTTTTGGGGCTTG+AGG + chr4_4:38643163-38643182 None:intergenic 50.0%
GTGCTAGCAACACACTGTGT+TGG - chr4_4:38643389-38643408 Msa0679990:intron 50.0%
CACCGGCCCAACAAATTTGT+AGG + chr4_4:38643513-38643532 None:intergenic 50.0%
TTCGCAACTGGATCGGTACA+AGG + chr4_4:38643990-38644009 None:intergenic 50.0%
GGTAACACTTACCTCAAGGC+AGG - chr4_4:38644480-38644499 Msa0679990:intron 50.0%
! ATGCGATTGGGGTCCTTTTC+AGG - chr4_4:38644962-38644981 Msa0679990:intron 50.0%
! GGCTCCCCCTATTTGACTTT+AGG + chr4_4:38645484-38645503 None:intergenic 50.0%
AAGTCAAATAGGGGGAGCCT+TGG - chr4_4:38645485-38645504 Msa0679990:intron 50.0%
ATCTCCAAGGCTTGTGATCC+CGG - chr4_4:38645912-38645931 Msa0679990:five_prime_UTR 50.0%
GTGATCCCGGCAGCAATTTA+TGG - chr4_4:38645925-38645944 Msa0679990:five_prime_UTR 50.0%
ATCTGTCCATTAGTGCAGCC+AGG - chr4_4:38646076-38646095 Msa0679990:five_prime_UTR 50.0%
TCTTGATCCAACGGCTACCA+AGG + chr4_4:38646103-38646122 None:intergenic 50.0%
GTCAGAACATCGTCGGTCAT+TGG + chr4_4:38646213-38646232 None:intergenic 50.0%
AGCTTGTGCCAGCCATGTTT+GGG - chr4_4:38646350-38646369 Msa0679990:five_prime_UTR 50.0%
TGGAAATGACCAGCTGCATC+CGG - chr4_4:38646482-38646501 Msa0679990:five_prime_UTR 50.0%
CATGGCTGCCAAGGTGAAAA+TGG - chr4_4:38642816-38642835 Msa0679990:three_prime_UTR 50.0%
TTGTGAAGGGATTCCTGCCA+TGG - chr4_4:38642879-38642898 Msa0679990:three_prime_UTR 50.0%
GAATGCAGTGTTGTCGATGG+CGG + chr4_4:38642954-38642973 None:intergenic 50.0%
!! GCTTAAGCTTTGGGGAGAAC+TGG - chr4_4:38643070-38643089 Msa0679990:three_prime_UTR 50.0%
CACCTCAAGCCCCAAAAACA+AGG - chr4_4:38643158-38643177 Msa0679990:three_prime_UTR 50.0%
!!! AGCCTTGTTTTTGGGGCTTG+AGG + chr4_4:38643163-38643182 None:intergenic 50.0%
GTGCTAGCAACACACTGTGT+TGG - chr4_4:38643389-38643408 Msa0679990:intron 50.0%
CACCGGCCCAACAAATTTGT+AGG + chr4_4:38643513-38643532 None:intergenic 50.0%
TTCGCAACTGGATCGGTACA+AGG + chr4_4:38643990-38644009 None:intergenic 50.0%
GGTAACACTTACCTCAAGGC+AGG - chr4_4:38644480-38644499 Msa0679990:intron 50.0%
! ATGCGATTGGGGTCCTTTTC+AGG - chr4_4:38644962-38644981 Msa0679990:intron 50.0%
! GGCTCCCCCTATTTGACTTT+AGG + chr4_4:38645484-38645503 None:intergenic 50.0%
AAGTCAAATAGGGGGAGCCT+TGG - chr4_4:38645485-38645504 Msa0679990:intron 50.0%
ATCTCCAAGGCTTGTGATCC+CGG - chr4_4:38645912-38645931 Msa0679990:five_prime_UTR 50.0%
GTGATCCCGGCAGCAATTTA+TGG - chr4_4:38645925-38645944 Msa0679990:five_prime_UTR 50.0%
ATCTGTCCATTAGTGCAGCC+AGG - chr4_4:38646076-38646095 Msa0679990:five_prime_UTR 50.0%
TCTTGATCCAACGGCTACCA+AGG + chr4_4:38646103-38646122 None:intergenic 50.0%
GTCAGAACATCGTCGGTCAT+TGG + chr4_4:38646213-38646232 None:intergenic 50.0%
AGCTTGTGCCAGCCATGTTT+GGG - chr4_4:38646350-38646369 Msa0679990:five_prime_UTR 50.0%
TGGAAATGACCAGCTGCATC+CGG - chr4_4:38646482-38646501 Msa0679990:five_prime_UTR 50.0%
TGAAGGGATTCCTGCCATGG+TGG - chr4_4:38642882-38642901 Msa0679990:three_prime_UTR 55.0%
!! CAAATTTGTTGGGCCGGTGC+TGG - chr4_4:38643514-38643533 Msa0679990:intron 55.0%
CAAGGTCCTGGCTGCACTAA+TGG + chr4_4:38646085-38646104 None:intergenic 55.0%
CATTAGTGCAGCCAGGACCT+TGG - chr4_4:38646083-38646102 Msa0679990:intron 55.0%
GCGCTCTCAAGAGAGGGATT+TGG + chr4_4:38646270-38646289 None:intergenic 55.0%
ACATGGCTGGCACAAGCTGA+GGG + chr4_4:38646348-38646367 None:intergenic 55.0%
AACATGGCTGGCACAAGCTG+AGG + chr4_4:38646349-38646368 None:intergenic 55.0%
CAGCTTGTGCCAGCCATGTT+TGG - chr4_4:38646349-38646368 Msa0679990:five_prime_UTR 55.0%
TGCTTAGTTCCGGATGCAGC+TGG + chr4_4:38646494-38646513 None:intergenic 55.0%
TGAAGGGATTCCTGCCATGG+TGG - chr4_4:38642882-38642901 Msa0679990:three_prime_UTR 55.0%
!! CAAATTTGTTGGGCCGGTGC+TGG - chr4_4:38643514-38643533 Msa0679990:intron 55.0%
CAAGGTCCTGGCTGCACTAA+TGG + chr4_4:38646085-38646104 None:intergenic 55.0%
CATTAGTGCAGCCAGGACCT+TGG - chr4_4:38646083-38646102 Msa0679990:intron 55.0%
GCGCTCTCAAGAGAGGGATT+TGG + chr4_4:38646270-38646289 None:intergenic 55.0%
ACATGGCTGGCACAAGCTGA+GGG + chr4_4:38646348-38646367 None:intergenic 55.0%
AACATGGCTGGCACAAGCTG+AGG + chr4_4:38646349-38646368 None:intergenic 55.0%
CAGCTTGTGCCAGCCATGTT+TGG - chr4_4:38646349-38646368 Msa0679990:five_prime_UTR 55.0%
TGCTTAGTTCCGGATGCAGC+TGG + chr4_4:38646494-38646513 None:intergenic 55.0%
!! TCCTGCCATGGTGGTGCCAT+AGG - chr4_4:38642891-38642910 Msa0679990:three_prime_UTR 60.0%
TGCAGCCTATGGCACCACCA+TGG + chr4_4:38642899-38642918 None:intergenic 60.0%
!! GCAGTGTTGTCGATGGCGGA+AGG + chr4_4:38642950-38642969 None:intergenic 60.0%
AGTGGACAGTGCTCCAGCAC+CGG + chr4_4:38643530-38643549 None:intergenic 60.0%
TCCAACGGCTACCAAGGTCC+TGG + chr4_4:38646097-38646116 None:intergenic 60.0%
!! TCCTGCCATGGTGGTGCCAT+AGG - chr4_4:38642891-38642910 Msa0679990:three_prime_UTR 60.0%
TGCAGCCTATGGCACCACCA+TGG + chr4_4:38642899-38642918 None:intergenic 60.0%
!! GCAGTGTTGTCGATGGCGGA+AGG + chr4_4:38642950-38642969 None:intergenic 60.0%
AGTGGACAGTGCTCCAGCAC+CGG + chr4_4:38643530-38643549 None:intergenic 60.0%
TCCAACGGCTACCAAGGTCC+TGG + chr4_4:38646097-38646116 None:intergenic 60.0%
GCCTATGGCACCACCATGGC+AGG + chr4_4:38642895-38642914 None:intergenic 65.0%
GCTGCCGGGATCACAAGCCT+TGG + chr4_4:38645919-38645938 None:intergenic 65.0%
! GCCAGGACCTTGGTAGCCGT+TGG - chr4_4:38646093-38646112 Msa0679990:intron 65.0%
GCCTATGGCACCACCATGGC+AGG + chr4_4:38642895-38642914 None:intergenic 65.0%
GCTGCCGGGATCACAAGCCT+TGG + chr4_4:38645919-38645938 None:intergenic 65.0%
! GCCAGGACCTTGGTAGCCGT+TGG - chr4_4:38646093-38646112 Msa0679990:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 38642809 38646910 38642809 ID=Msa0679990;Name=Msa0679990
chr4_4 mRNA 38642809 38646910 38642809 ID=Msa0679990-mRNA-1;Parent=Msa0679990;Name=Msa0679990-mRNA-1;_AED=0.14;_eAED=0.14;_QI=917|1|1|1|0.55|0.5|10|418|235
chr4_4 exon 38642809 38643207 38642809 ID=Msa0679990-mRNA-1:exon:9087;Parent=Msa0679990-mRNA-1
chr4_4 exon 38643244 38643367 38643244 ID=Msa0679990-mRNA-1:exon:9086;Parent=Msa0679990-mRNA-1
chr4_4 exon 38643720 38643879 38643720 ID=Msa0679990-mRNA-1:exon:9085;Parent=Msa0679990-mRNA-1
chr4_4 exon 38643990 38644079 38643990 ID=Msa0679990-mRNA-1:exon:9084;Parent=Msa0679990-mRNA-1
chr4_4 exon 38644736 38644770 38644736 ID=Msa0679990-mRNA-1:exon:9083;Parent=Msa0679990-mRNA-1
chr4_4 exon 38645066 38645146 38645066 ID=Msa0679990-mRNA-1:exon:9082;Parent=Msa0679990-mRNA-1
chr4_4 exon 38645286 38645342 38645286 ID=Msa0679990-mRNA-1:exon:9081;Parent=Msa0679990-mRNA-1
chr4_4 exon 38645542 38645646 38645542 ID=Msa0679990-mRNA-1:exon:9080;Parent=Msa0679990-mRNA-1
chr4_4 exon 38645800 38646095 38645800 ID=Msa0679990-mRNA-1:exon:9079;Parent=Msa0679990-mRNA-1
chr4_4 exon 38646215 38646910 38646215 ID=Msa0679990-mRNA-1:exon:9078;Parent=Msa0679990-mRNA-1
chr4_4 five_prime_UTR 38646215 38646910 38646215 ID=Msa0679990-mRNA-1:five_prime_utr;Parent=Msa0679990-mRNA-1
chr4_4 five_prime_UTR 38645875 38646095 38645875 ID=Msa0679990-mRNA-1:five_prime_utr;Parent=Msa0679990-mRNA-1
chr4_4 CDS 38645800 38645874 38645800 ID=Msa0679990-mRNA-1:cds;Parent=Msa0679990-mRNA-1
chr4_4 CDS 38645542 38645646 38645542 ID=Msa0679990-mRNA-1:cds;Parent=Msa0679990-mRNA-1
chr4_4 CDS 38645286 38645342 38645286 ID=Msa0679990-mRNA-1:cds;Parent=Msa0679990-mRNA-1
chr4_4 CDS 38645066 38645146 38645066 ID=Msa0679990-mRNA-1:cds;Parent=Msa0679990-mRNA-1
chr4_4 CDS 38644736 38644770 38644736 ID=Msa0679990-mRNA-1:cds;Parent=Msa0679990-mRNA-1
chr4_4 CDS 38643990 38644079 38643990 ID=Msa0679990-mRNA-1:cds;Parent=Msa0679990-mRNA-1
chr4_4 CDS 38643720 38643879 38643720 ID=Msa0679990-mRNA-1:cds;Parent=Msa0679990-mRNA-1
chr4_4 CDS 38643263 38643367 38643263 ID=Msa0679990-mRNA-1:cds;Parent=Msa0679990-mRNA-1
chr4_4 three_prime_UTR 38643244 38643262 38643244 ID=Msa0679990-mRNA-1:three_prime_utr;Parent=Msa0679990-mRNA-1
chr4_4 three_prime_UTR 38642809 38643207 38642809 ID=Msa0679990-mRNA-1:three_prime_utr;Parent=Msa0679990-mRNA-1
Gene Sequence

>Msa0679990

ATGGATTTCAGAAATTCTGGTGATTATGATGTTAGTAAGCTCAATGACGCCAACAATGCTCAACAAATAGAACAGATCATAGATACTAACAGTGATGGCGGTTTTTTGAAACTTTCAAGTACCCAAGAGTGGTTATTAGGTGACAATTCTGCACCAATAAATAGGAAGATGACTGCAAAGACAATCCAAGACAACAGAGCAAGACTGAAGAAACTGAACGCGCTCAAATACCAATCTCTCAAGAAAGAATTACTACTTCTCTCTTTGGGTATTGGATTGGGTTGTAGCGGATATTGCTTGATAGTTTTTTCTGTACAGGCTGCTATAAGTTATGCGATTGGGGTCCTTTTCAGTTGCTTGTACCTTCAGCTCTTGTATCAACATGCAGACAACATATCCAGTGAAACCGTTCCTCAAATATTCATGAAAAAGAAGTCAAAGAAAATTGGTATAAGAAGCGAAGACCTTAGTGATTCTTTCGAGAAAACAATCAGGGGTAGTGGTATAGCACTTTCATCTCCAAGGCTTGTGATCCCGGCAGCAATTTATGGACTTTGGGCTGTGTCGCATCAGTATTTTATCAATGACTTGTTGGATTTTCAGCTTGTGCCAGCCATGTTTGGGATGTTTGTCTACAAAGCTGCTGCTCTTGTGCAAGTCTATAGAGACAATAAAGACTTAGGCTTTGAATTTCCAGAAGAATTCTGA
Protein sequence

>Msa0679990

MDFRNSGDYDVSKLNDANNAQQIEQIIDTNSDGGFLKLSSTQEWLLGDNSAPINRKMTAKTIQDNRARLKKLNALKYQSLKKELLLLSLGIGLGCSGYCLIVFSVQAAISYAIGVLFSCLYLQLLYQHADNISSETVPQIFMKKKSKKIGIRSEDLSDSFEKTIRGSGIALSSPRLVIPAAIYGLWAVSHQYFINDLLDFQLVPAMFGMFVYKAAALVQVYRDNKDLGFEFPEEF*