Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683290 | XP_013456038.1 | 93.627 | 408 | 17 | 1 | 1 | 399 | 5 | 412 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683290 | sp|Q9LSS5|ICR3_ARATH | 37.621 | 412 | 209 | 10 | 1 | 399 | 8 | 384 | 3.32e-60 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683290 | A0A072UJY6 | 93.627 | 408 | 17 | 1 | 1 | 399 | 5 | 412 | 0.0 | 683 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036870 | Msa0683290 | 0.810191 | 1.303229e-50 | -8.615850e-47 |
| Msa0643300 | Msa0683290 | 0.953340 | 3.401494e-111 | -8.615850e-47 |
| Msa0683290 | Msa0683570 | 0.889593 | 2.108345e-73 | -8.615850e-47 |
| Msa0683290 | Msa1161680 | 0.806973 | 6.342278e-50 | -8.615850e-47 |
| Msa0683290 | Msa1454140 | 0.816905 | 4.345176e-52 | -8.615850e-47 |
| Msa0527860 | Msa0683290 | 0.802301 | 5.988019e-49 | -8.615850e-47 |
| Msa0546500 | Msa0683290 | 0.801875 | 7.325680e-49 | -8.615850e-47 |
| Msa0594310 | Msa0683290 | 0.802073 | 6.669725e-49 | -8.615850e-47 |
| Msa0600930 | Msa0683290 | 0.816855 | 4.460395e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683290 | MtrunA17_Chr4g0030031 | 93.627 | 408 | 17 | 1 | 1 | 399 | 8 | 415 | 0.0 | 683 |
| Msa0683290 | MtrunA17_Chr7g0263701 | 41.206 | 398 | 206 | 3 | 11 | 399 | 21 | 399 | 3.90e-76 | 247 |
| Msa0683290 | MtrunA17_Chr1g0181611 | 41.687 | 403 | 213 | 4 | 7 | 399 | 13 | 403 | 1.67e-74 | 242 |
| Msa0683290 | MtrunA17_Chr2g0326021 | 46.491 | 228 | 83 | 4 | 172 | 399 | 128 | 316 | 2.62e-43 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683290 | AT5G60210.2 | 37.621 | 412 | 209 | 10 | 1 | 399 | 8 | 384 | 3.37e-61 | 207 |
| Msa0683290 | AT5G60210.4 | 37.621 | 412 | 209 | 10 | 1 | 399 | 8 | 384 | 3.37e-61 | 207 |
| Msa0683290 | AT5G60210.1 | 37.621 | 412 | 209 | 10 | 1 | 399 | 8 | 384 | 3.37e-61 | 207 |
| Msa0683290 | AT5G60210.6 | 37.621 | 412 | 209 | 10 | 1 | 399 | 8 | 384 | 3.37e-61 | 207 |
| Msa0683290 | AT5G60210.5 | 37.621 | 412 | 209 | 10 | 1 | 399 | 32 | 408 | 7.19e-61 | 207 |
| Msa0683290 | AT5G60210.3 | 37.621 | 412 | 209 | 10 | 1 | 399 | 32 | 408 | 7.19e-61 | 207 |
| Msa0683290 | AT2G37080.3 | 38.072 | 415 | 185 | 9 | 2 | 399 | 9 | 368 | 1.24e-60 | 206 |
| Msa0683290 | AT2G37080.1 | 37.890 | 417 | 185 | 9 | 2 | 399 | 9 | 370 | 2.36e-60 | 205 |
| Msa0683290 | AT2G37080.2 | 37.890 | 417 | 185 | 9 | 2 | 399 | 9 | 370 | 2.36e-60 | 205 |
| Msa0683290 | AT3G53350.3 | 39.205 | 176 | 87 | 5 | 2 | 171 | 9 | 170 | 2.24e-23 | 101 |
| Msa0683290 | AT3G53350.3 | 39.706 | 136 | 61 | 3 | 261 | 395 | 176 | 291 | 1.90e-14 | 74.7 |
| Msa0683290 | AT3G53350.2 | 39.205 | 176 | 87 | 5 | 2 | 171 | 9 | 170 | 2.24e-23 | 101 |
| Msa0683290 | AT3G53350.2 | 39.706 | 136 | 61 | 3 | 261 | 395 | 176 | 291 | 1.90e-14 | 74.7 |
| Msa0683290 | AT3G53350.8 | 39.205 | 176 | 87 | 5 | 2 | 171 | 20 | 181 | 3.98e-23 | 100 |
| Msa0683290 | AT3G53350.8 | 39.706 | 136 | 61 | 3 | 261 | 395 | 187 | 302 | 3.76e-14 | 73.9 |
| Msa0683290 | AT3G53350.7 | 38.764 | 178 | 87 | 4 | 2 | 171 | 9 | 172 | 1.04e-22 | 99.4 |
| Msa0683290 | AT3G53350.7 | 39.706 | 136 | 61 | 3 | 261 | 395 | 178 | 293 | 2.01e-14 | 74.7 |
| Msa0683290 | AT3G53350.1 | 38.764 | 178 | 87 | 4 | 2 | 171 | 9 | 172 | 1.04e-22 | 99.4 |
| Msa0683290 | AT3G53350.1 | 39.706 | 136 | 61 | 3 | 261 | 395 | 178 | 293 | 2.01e-14 | 74.7 |
| Msa0683290 | AT3G53350.5 | 38.764 | 178 | 87 | 4 | 2 | 171 | 9 | 172 | 1.04e-22 | 99.4 |
| Msa0683290 | AT3G53350.5 | 39.706 | 136 | 61 | 3 | 261 | 395 | 178 | 293 | 2.01e-14 | 74.7 |
| Msa0683290 | AT3G53350.4 | 38.764 | 178 | 87 | 4 | 2 | 171 | 20 | 183 | 1.80e-22 | 98.6 |
| Msa0683290 | AT3G53350.4 | 39.706 | 136 | 61 | 3 | 261 | 395 | 189 | 304 | 4.15e-14 | 73.9 |
| Msa0683290 | AT3G53350.6 | 38.764 | 178 | 87 | 4 | 2 | 171 | 20 | 183 | 1.80e-22 | 98.6 |
| Msa0683290 | AT3G53350.6 | 39.706 | 136 | 61 | 3 | 261 | 395 | 189 | 304 | 4.15e-14 | 73.9 |
| Msa0683290 | AT3G53350.9 | 44.167 | 120 | 53 | 1 | 52 | 171 | 95 | 200 | 1.49e-19 | 90.5 |
| Msa0683290 | AT3G53350.9 | 39.706 | 136 | 61 | 3 | 261 | 395 | 206 | 321 | 3.51e-14 | 74.3 |
Find 54 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATTTGTGCCTGAGTTTC+AGG | 0.158972 | 4_4:-45697555 | None:intergenic |
| AAAGAACCGTCGAGATTCTA+AGG | 0.289339 | 4_4:+45697613 | Msa0683290:CDS |
| GAGCAACTCTTAGCCCTATC+TGG | 0.309073 | 4_4:+45697192 | Msa0683290:CDS |
| TGCTTTGTCTTCTGCATTGA+AGG | 0.331152 | 4_4:+45697365 | Msa0683290:CDS |
| TGACTTGCGATCAGCGAGTT+TGG | 0.351529 | 4_4:-45696579 | None:intergenic |
| GCACGCGGAGAAACTTTCTT+AGG | 0.360740 | 4_4:-45696464 | None:intergenic |
| ATCTCTTCTTCAATATGATT+AGG | 0.361618 | 4_4:-45697840 | None:intergenic |
| CCCGAGCAAAATATCTGAAT+TGG | 0.366490 | 4_4:+45697062 | Msa0683290:CDS |
| CAGCAATGCGTACGAGTTGA+TGG | 0.372307 | 4_4:+45697959 | Msa0683290:CDS |
| GTTCTTTGCTATTCTTGAGT+TGG | 0.389004 | 4_4:-45697533 | None:intergenic |
| CAACTCCATTGCTTTGGAGT+TGG | 0.399162 | 4_4:+45697665 | Msa0683290:CDS |
| TGGCTGCAACTCCATTGCTT+TGG | 0.418359 | 4_4:+45697659 | Msa0683290:CDS |
| GCTGAAAGCACAACTTGAAT+TGG | 0.425528 | 4_4:+45697398 | Msa0683290:CDS |
| GAAAGTGAAATATTGAGAAA+TGG | 0.426244 | 4_4:+45697810 | Msa0683290:CDS |
| AACTGATATTGAAGAGTTGA+AGG | 0.430741 | 4_4:+45698046 | Msa0683290:CDS |
| TGTTCTTTGAAGTCTGAGAT+TGG | 0.431751 | 4_4:+45697864 | Msa0683290:CDS |
| TATCTAGAGCTATGTGCTAC+TGG | 0.432289 | 4_4:+45697240 | Msa0683290:CDS |
| AGAGTTGAAGGCTAATCTAA+TGG | 0.435601 | 4_4:+45698058 | Msa0683290:CDS |
| CCTCCAACTCACATTGTCTC+TGG | 0.446526 | 4_4:-45698004 | None:intergenic |
| GCAAGCTCAGCAAGACTTCG+AGG | 0.450128 | 4_4:+45697161 | Msa0683290:CDS |
| GTTGATGGAGCAGATAAAAT+CGG | 0.470705 | 4_4:+45697974 | Msa0683290:CDS |
| GAGCAGATAAAATCGGAATC+AGG | 0.477930 | 4_4:+45697981 | Msa0683290:CDS |
| TAGGGCTAAGAGTTGCTCCT+TGG | 0.485611 | 4_4:-45697187 | None:intergenic |
| TCAAACTCAACAAGCTGAAT+CGG | 0.486664 | 4_4:+45697440 | Msa0683290:CDS |
| CAGAAGTGGTTCTTCTGAAG+TGG | 0.492122 | 4_4:+45696439 | None:intergenic |
| GTCAACTGAGAGATGCTGTT+GGG | 0.495983 | 4_4:-45697337 | None:intergenic |
| CCAGAGACAATGTGAGTTGG+AGG | 0.499761 | 4_4:+45698004 | Msa0683290:CDS |
| ACTTCAAGATGATTTGAAGA+AGG | 0.507940 | 4_4:+45697101 | Msa0683290:CDS |
| TAGCAAAGAACCTGAAACTC+AGG | 0.524331 | 4_4:+45697545 | Msa0683290:CDS |
| CTTTGAAGTCTGAGATTGGA+CGG | 0.524621 | 4_4:+45697868 | Msa0683290:CDS |
| GACGTTGCGAGAGACGTAGA+TGG | 0.528471 | 4_4:+45697639 | Msa0683290:CDS |
| ACGTGATAGCGCATGGAAGT+CGG | 0.536408 | 4_4:+45697302 | Msa0683290:CDS |
| ATCAGAATCACTTTCTCAGA+TGG | 0.543609 | 4_4:+45697497 | Msa0683290:CDS |
| TTGTTCTTGATATTTAGTCT+CGG | 0.554617 | 4_4:-45697913 | None:intergenic |
| TGAAATATTGAGAAATGGAG+AGG | 0.570445 | 4_4:+45697815 | Msa0683290:CDS |
| AGATGATTTGAAGAAGGTGA+AGG | 0.573247 | 4_4:+45697107 | Msa0683290:CDS |
| AGGCCAGAGACAATGTGAGT+TGG | 0.574082 | 4_4:+45698001 | Msa0683290:CDS |
| AGTTGGAACATTCTAGAGCA+AGG | 0.576110 | 4_4:+45697682 | Msa0683290:CDS |
| CAGAAGAACGTGATAGCGCA+TGG | 0.577018 | 4_4:+45697295 | Msa0683290:CDS |
| ATGATTCAGACAAAATAAGC+TGG | 0.579255 | 4_4:-45697131 | None:intergenic |
| TCAAACTAGTAAAATATCAA+AGG | 0.580215 | 4_4:+45696547 | Msa0683290:CDS |
| GCAAGACTTCGAGGAATCCA+AGG | 0.582107 | 4_4:+45697170 | Msa0683290:CDS |
| ATGTTCCAACTCCAAAGCAA+TGG | 0.588382 | 4_4:-45697670 | None:intergenic |
| CTTGAATTGGTAGCTACTTG+TGG | 0.590895 | 4_4:+45697411 | Msa0683290:CDS |
| CGAAGAAGAAGATACAGAGT+CGG | 0.594385 | 4_4:-45696522 | None:intergenic |
| TCAGTCTGTTCAAAATCTTG+TGG | 0.594833 | 4_4:+45697767 | Msa0683290:CDS |
| GAGTAGTCGTAGTTCTCAGT+TGG | 0.604285 | 4_4:-45696493 | None:intergenic |
| GGATGATTGTAAATTCGAGA+AGG | 0.605294 | 4_4:+45697788 | Msa0683290:CDS |
| GTTGGAACATTCTAGAGCAA+GGG | 0.613738 | 4_4:+45697683 | Msa0683290:CDS |
| CTCAGTTGGCGTACAGCACG+CGG | 0.616898 | 4_4:-45696479 | None:intergenic |
| AGTCAACTGAGAGATGCTGT+TGG | 0.631624 | 4_4:-45697338 | None:intergenic |
| GAAGGCTAATCTAATGGACA+AGG | 0.644778 | 4_4:+45698064 | Msa0683290:CDS |
| GTCATCCCTTAGAATCTCGA+CGG | 0.658533 | 4_4:-45697619 | None:intergenic |
| AAGAACCGTCGAGATTCTAA+GGG | 0.684529 | 4_4:+45697614 | Msa0683290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATGAAAGATAAATTAA+AGG | + | chr4_4:45696723-45696742 | Msa0683290:intron | 10.0% |
| !! | TATAATGAAAGATAAATTAA+AGG | + | chr4_4:45696723-45696742 | Msa0683290:intron | 10.0% |
| !! | TTTATCTTTCATTATAGAAA+TGG | - | chr4_4:45696719-45696738 | None:intergenic | 15.0% |
| !! | TTTATCTTTCATTATAGAAA+TGG | - | chr4_4:45696719-45696738 | None:intergenic | 15.0% |
| !! | TCAAACTAGTAAAATATCAA+AGG | + | chr4_4:45696547-45696566 | Msa0683290:CDS | 20.0% |
| !!! | CAGAAGTAGTATTTTATTAT+TGG | - | chr4_4:45696640-45696659 | None:intergenic | 20.0% |
| !! | AAAATCTTCTCAACTAAAAA+AGG | - | chr4_4:45697008-45697027 | None:intergenic | 20.0% |
| !!! | ATTCTGATAAGTTTTGATTT+AGG | - | chr4_4:45697485-45697504 | None:intergenic | 20.0% |
| !! | TCAAACTAGTAAAATATCAA+AGG | + | chr4_4:45696547-45696566 | Msa0683290:CDS | 20.0% |
| !!! | CAGAAGTAGTATTTTATTAT+TGG | - | chr4_4:45696640-45696659 | None:intergenic | 20.0% |
| !! | AAAATCTTCTCAACTAAAAA+AGG | - | chr4_4:45697008-45697027 | None:intergenic | 20.0% |
| !!! | ATTCTGATAAGTTTTGATTT+AGG | - | chr4_4:45697485-45697504 | None:intergenic | 20.0% |
| ! | CCAAACAAAGTCTATATTTA+AGG | - | chr4_4:45696664-45696683 | None:intergenic | 25.0% |
| ! | CCTTAAATATAGACTTTGTT+TGG | + | chr4_4:45696661-45696680 | Msa0683290:intron | 25.0% |
| !!! | ATTAAGTTGATTATCCAAAC+TGG | + | chr4_4:45696914-45696933 | Msa0683290:intron | 25.0% |
| !!! | TTAAGTTGATTATCCAAACT+GGG | + | chr4_4:45696915-45696934 | Msa0683290:intron | 25.0% |
| ! | TATAATTGATGTTGCATTAG+AGG | + | chr4_4:45697034-45697053 | Msa0683290:intron | 25.0% |
| ! | GAAAGTGAAATATTGAGAAA+TGG | + | chr4_4:45697810-45697829 | Msa0683290:CDS | 25.0% |
| ! | ATCTCTTCTTCAATATGATT+AGG | - | chr4_4:45697843-45697862 | None:intergenic | 25.0% |
| ! | TTGTTCTTGATATTTAGTCT+CGG | - | chr4_4:45697916-45697935 | None:intergenic | 25.0% |
| ! | CCAAACAAAGTCTATATTTA+AGG | - | chr4_4:45696664-45696683 | None:intergenic | 25.0% |
| ! | CCTTAAATATAGACTTTGTT+TGG | + | chr4_4:45696661-45696680 | Msa0683290:intron | 25.0% |
| !!! | ATTAAGTTGATTATCCAAAC+TGG | + | chr4_4:45696914-45696933 | Msa0683290:intron | 25.0% |
| !!! | TTAAGTTGATTATCCAAACT+GGG | + | chr4_4:45696915-45696934 | Msa0683290:intron | 25.0% |
| ! | TATAATTGATGTTGCATTAG+AGG | + | chr4_4:45697034-45697053 | Msa0683290:intron | 25.0% |
| ! | GAAAGTGAAATATTGAGAAA+TGG | + | chr4_4:45697810-45697829 | Msa0683290:CDS | 25.0% |
| ! | ATCTCTTCTTCAATATGATT+AGG | - | chr4_4:45697843-45697862 | None:intergenic | 25.0% |
| ! | TTGTTCTTGATATTTAGTCT+CGG | - | chr4_4:45697916-45697935 | None:intergenic | 25.0% |
| ! | TCCAATTCAGATATTTTGCT+CGG | - | chr4_4:45697066-45697085 | None:intergenic | 30.0% |
| ACTTCAAGATGATTTGAAGA+AGG | + | chr4_4:45697101-45697120 | Msa0683290:CDS | 30.0% | |
| ATGATTCAGACAAAATAAGC+TGG | - | chr4_4:45697134-45697153 | None:intergenic | 30.0% | |
| TGAAATATTGAGAAATGGAG+AGG | + | chr4_4:45697815-45697834 | Msa0683290:CDS | 30.0% | |
| AACTGATATTGAAGAGTTGA+AGG | + | chr4_4:45698046-45698065 | Msa0683290:CDS | 30.0% | |
| ! | TCCAATTCAGATATTTTGCT+CGG | - | chr4_4:45697066-45697085 | None:intergenic | 30.0% |
| ACTTCAAGATGATTTGAAGA+AGG | + | chr4_4:45697101-45697120 | Msa0683290:CDS | 30.0% | |
| ATGATTCAGACAAAATAAGC+TGG | - | chr4_4:45697134-45697153 | None:intergenic | 30.0% | |
| TGAAATATTGAGAAATGGAG+AGG | + | chr4_4:45697815-45697834 | Msa0683290:CDS | 30.0% | |
| AACTGATATTGAAGAGTTGA+AGG | + | chr4_4:45698046-45698065 | Msa0683290:CDS | 30.0% | |
| !! | TGGTAAAAACTTGTTACCTC+AGG | - | chr4_4:45696620-45696639 | None:intergenic | 35.0% |
| AAGTTATACAATGCCCAGTT+TGG | - | chr4_4:45696931-45696950 | None:intergenic | 35.0% | |
| ! | CCAATTCAGATATTTTGCTC+GGG | - | chr4_4:45697065-45697084 | None:intergenic | 35.0% |
| AGATGATTTGAAGAAGGTGA+AGG | + | chr4_4:45697107-45697126 | Msa0683290:CDS | 35.0% | |
| TCAAACTCAACAAGCTGAAT+CGG | + | chr4_4:45697440-45697459 | Msa0683290:CDS | 35.0% | |
| ATCAGAATCACTTTCTCAGA+TGG | + | chr4_4:45697497-45697516 | Msa0683290:CDS | 35.0% | |
| !! | GTTCTTTGCTATTCTTGAGT+TGG | - | chr4_4:45697536-45697555 | None:intergenic | 35.0% |
| TCAGTCTGTTCAAAATCTTG+TGG | + | chr4_4:45697767-45697786 | Msa0683290:CDS | 35.0% | |
| GGATGATTGTAAATTCGAGA+AGG | + | chr4_4:45697788-45697807 | Msa0683290:CDS | 35.0% | |
| !! | TGTTCTTTGAAGTCTGAGAT+TGG | + | chr4_4:45697864-45697883 | Msa0683290:CDS | 35.0% |
| ! | GTTGATGGAGCAGATAAAAT+CGG | + | chr4_4:45697974-45697993 | Msa0683290:CDS | 35.0% |
| AGAGTTGAAGGCTAATCTAA+TGG | + | chr4_4:45698058-45698077 | Msa0683290:CDS | 35.0% | |
| !! | TGGTAAAAACTTGTTACCTC+AGG | - | chr4_4:45696620-45696639 | None:intergenic | 35.0% |
| AAGTTATACAATGCCCAGTT+TGG | - | chr4_4:45696931-45696950 | None:intergenic | 35.0% | |
| ! | CCAATTCAGATATTTTGCTC+GGG | - | chr4_4:45697065-45697084 | None:intergenic | 35.0% |
| AGATGATTTGAAGAAGGTGA+AGG | + | chr4_4:45697107-45697126 | Msa0683290:CDS | 35.0% | |
| TCAAACTCAACAAGCTGAAT+CGG | + | chr4_4:45697440-45697459 | Msa0683290:CDS | 35.0% | |
| ATCAGAATCACTTTCTCAGA+TGG | + | chr4_4:45697497-45697516 | Msa0683290:CDS | 35.0% | |
| !! | GTTCTTTGCTATTCTTGAGT+TGG | - | chr4_4:45697536-45697555 | None:intergenic | 35.0% |
| TCAGTCTGTTCAAAATCTTG+TGG | + | chr4_4:45697767-45697786 | Msa0683290:CDS | 35.0% | |
| GGATGATTGTAAATTCGAGA+AGG | + | chr4_4:45697788-45697807 | Msa0683290:CDS | 35.0% | |
| !! | TGTTCTTTGAAGTCTGAGAT+TGG | + | chr4_4:45697864-45697883 | Msa0683290:CDS | 35.0% |
| ! | GTTGATGGAGCAGATAAAAT+CGG | + | chr4_4:45697974-45697993 | Msa0683290:CDS | 35.0% |
| AGAGTTGAAGGCTAATCTAA+TGG | + | chr4_4:45698058-45698077 | Msa0683290:CDS | 35.0% | |
| CGAAGAAGAAGATACAGAGT+CGG | - | chr4_4:45696525-45696544 | None:intergenic | 40.0% | |
| !! | AACTTGTTACCTCAGGAACT+GGG | - | chr4_4:45696613-45696632 | None:intergenic | 40.0% |
| !! | AAACTTGTTACCTCAGGAAC+TGG | - | chr4_4:45696614-45696633 | None:intergenic | 40.0% |
| AAGCACTTGTGAGACTGTTT+GGG | - | chr4_4:45696804-45696823 | None:intergenic | 40.0% | |
| TAAGCACTTGTGAGACTGTT+TGG | - | chr4_4:45696805-45696824 | None:intergenic | 40.0% | |
| AGTCTCACAAGTGCTTATGT+CGG | + | chr4_4:45696808-45696827 | Msa0683290:intron | 40.0% | |
| CACATTGCTAGCATTGCTTT+CGG | + | chr4_4:45696973-45696992 | Msa0683290:intron | 40.0% | |
| CCCGAGCAAAATATCTGAAT+TGG | + | chr4_4:45697062-45697081 | Msa0683290:CDS | 40.0% | |
| !! | CTCTTCGAGTTTTCCAGATA+GGG | - | chr4_4:45697208-45697227 | None:intergenic | 40.0% |
| !! | ACTCTTCGAGTTTTCCAGAT+AGG | - | chr4_4:45697209-45697228 | None:intergenic | 40.0% |
| ! | TATCTAGAGCTATGTGCTAC+TGG | + | chr4_4:45697240-45697259 | Msa0683290:CDS | 40.0% |
| ! | CACGTTCTTCTGTGATTTTC+TGG | - | chr4_4:45697287-45697306 | None:intergenic | 40.0% |
| TGCTTTGTCTTCTGCATTGA+AGG | + | chr4_4:45697365-45697384 | Msa0683290:CDS | 40.0% | |
| ! | GCTGAAAGCACAACTTGAAT+TGG | + | chr4_4:45697398-45697417 | Msa0683290:CDS | 40.0% |
| ! | CTTGAATTGGTAGCTACTTG+TGG | + | chr4_4:45697411-45697430 | Msa0683290:CDS | 40.0% |
| TAGCAAAGAACCTGAAACTC+AGG | + | chr4_4:45697545-45697564 | Msa0683290:CDS | 40.0% | |
| AAGATTTGTGCCTGAGTTTC+AGG | - | chr4_4:45697558-45697577 | None:intergenic | 40.0% | |
| AAAGAACCGTCGAGATTCTA+AGG | + | chr4_4:45697613-45697632 | Msa0683290:CDS | 40.0% | |
| AAGAACCGTCGAGATTCTAA+GGG | + | chr4_4:45697614-45697633 | Msa0683290:CDS | 40.0% | |
| ATGTTCCAACTCCAAAGCAA+TGG | - | chr4_4:45697673-45697692 | None:intergenic | 40.0% | |
| !! | AGTTGGAACATTCTAGAGCA+AGG | + | chr4_4:45697682-45697701 | Msa0683290:CDS | 40.0% |
| !! | GTTGGAACATTCTAGAGCAA+GGG | + | chr4_4:45697683-45697702 | Msa0683290:CDS | 40.0% |
| !! | CTTTGAAGTCTGAGATTGGA+CGG | + | chr4_4:45697868-45697887 | Msa0683290:CDS | 40.0% |
| GAGCAGATAAAATCGGAATC+AGG | + | chr4_4:45697981-45698000 | Msa0683290:CDS | 40.0% | |
| ! | GAAGGCTAATCTAATGGACA+AGG | + | chr4_4:45698064-45698083 | Msa0683290:CDS | 40.0% |
| CGAAGAAGAAGATACAGAGT+CGG | - | chr4_4:45696525-45696544 | None:intergenic | 40.0% | |
| !! | AACTTGTTACCTCAGGAACT+GGG | - | chr4_4:45696613-45696632 | None:intergenic | 40.0% |
| !! | AAACTTGTTACCTCAGGAAC+TGG | - | chr4_4:45696614-45696633 | None:intergenic | 40.0% |
| AAGCACTTGTGAGACTGTTT+GGG | - | chr4_4:45696804-45696823 | None:intergenic | 40.0% | |
| TAAGCACTTGTGAGACTGTT+TGG | - | chr4_4:45696805-45696824 | None:intergenic | 40.0% | |
| AGTCTCACAAGTGCTTATGT+CGG | + | chr4_4:45696808-45696827 | Msa0683290:intron | 40.0% | |
| CACATTGCTAGCATTGCTTT+CGG | + | chr4_4:45696973-45696992 | Msa0683290:intron | 40.0% | |
| CCCGAGCAAAATATCTGAAT+TGG | + | chr4_4:45697062-45697081 | Msa0683290:CDS | 40.0% | |
| !! | CTCTTCGAGTTTTCCAGATA+GGG | - | chr4_4:45697208-45697227 | None:intergenic | 40.0% |
| !! | ACTCTTCGAGTTTTCCAGAT+AGG | - | chr4_4:45697209-45697228 | None:intergenic | 40.0% |
| ! | TATCTAGAGCTATGTGCTAC+TGG | + | chr4_4:45697240-45697259 | Msa0683290:CDS | 40.0% |
| ! | CACGTTCTTCTGTGATTTTC+TGG | - | chr4_4:45697287-45697306 | None:intergenic | 40.0% |
| TGCTTTGTCTTCTGCATTGA+AGG | + | chr4_4:45697365-45697384 | Msa0683290:CDS | 40.0% | |
| ! | GCTGAAAGCACAACTTGAAT+TGG | + | chr4_4:45697398-45697417 | Msa0683290:CDS | 40.0% |
| ! | CTTGAATTGGTAGCTACTTG+TGG | + | chr4_4:45697411-45697430 | Msa0683290:CDS | 40.0% |
| TAGCAAAGAACCTGAAACTC+AGG | + | chr4_4:45697545-45697564 | Msa0683290:CDS | 40.0% | |
| AAGATTTGTGCCTGAGTTTC+AGG | - | chr4_4:45697558-45697577 | None:intergenic | 40.0% | |
| AAAGAACCGTCGAGATTCTA+AGG | + | chr4_4:45697613-45697632 | Msa0683290:CDS | 40.0% | |
| AAGAACCGTCGAGATTCTAA+GGG | + | chr4_4:45697614-45697633 | Msa0683290:CDS | 40.0% | |
| ATGTTCCAACTCCAAAGCAA+TGG | - | chr4_4:45697673-45697692 | None:intergenic | 40.0% | |
| !! | AGTTGGAACATTCTAGAGCA+AGG | + | chr4_4:45697682-45697701 | Msa0683290:CDS | 40.0% |
| !! | GTTGGAACATTCTAGAGCAA+GGG | + | chr4_4:45697683-45697702 | Msa0683290:CDS | 40.0% |
| !! | CTTTGAAGTCTGAGATTGGA+CGG | + | chr4_4:45697868-45697887 | Msa0683290:CDS | 40.0% |
| GAGCAGATAAAATCGGAATC+AGG | + | chr4_4:45697981-45698000 | Msa0683290:CDS | 40.0% | |
| ! | GAAGGCTAATCTAATGGACA+AGG | + | chr4_4:45698064-45698083 | Msa0683290:CDS | 40.0% |
| GAGTAGTCGTAGTTCTCAGT+TGG | - | chr4_4:45696496-45696515 | None:intergenic | 45.0% | |
| GTCAACTGAGAGATGCTGTT+GGG | - | chr4_4:45697340-45697359 | None:intergenic | 45.0% | |
| AGTCAACTGAGAGATGCTGT+TGG | - | chr4_4:45697341-45697360 | None:intergenic | 45.0% | |
| GTCATCCCTTAGAATCTCGA+CGG | - | chr4_4:45697622-45697641 | None:intergenic | 45.0% | |
| !! | CAACTCCATTGCTTTGGAGT+TGG | + | chr4_4:45697665-45697684 | Msa0683290:CDS | 45.0% |
| GAGTAGTCGTAGTTCTCAGT+TGG | - | chr4_4:45696496-45696515 | None:intergenic | 45.0% | |
| GTCAACTGAGAGATGCTGTT+GGG | - | chr4_4:45697340-45697359 | None:intergenic | 45.0% | |
| AGTCAACTGAGAGATGCTGT+TGG | - | chr4_4:45697341-45697360 | None:intergenic | 45.0% | |
| GTCATCCCTTAGAATCTCGA+CGG | - | chr4_4:45697622-45697641 | None:intergenic | 45.0% | |
| !! | CAACTCCATTGCTTTGGAGT+TGG | + | chr4_4:45697665-45697684 | Msa0683290:CDS | 45.0% |
| GCACGCGGAGAAACTTTCTT+AGG | - | chr4_4:45696467-45696486 | None:intergenic | 50.0% | |
| ! | TGACTTGCGATCAGCGAGTT+TGG | - | chr4_4:45696582-45696601 | None:intergenic | 50.0% |
| GCAAGACTTCGAGGAATCCA+AGG | + | chr4_4:45697170-45697189 | Msa0683290:CDS | 50.0% | |
| TAGGGCTAAGAGTTGCTCCT+TGG | - | chr4_4:45697190-45697209 | None:intergenic | 50.0% | |
| GAGCAACTCTTAGCCCTATC+TGG | + | chr4_4:45697192-45697211 | Msa0683290:CDS | 50.0% | |
| ! | CAGAAGAACGTGATAGCGCA+TGG | + | chr4_4:45697295-45697314 | Msa0683290:CDS | 50.0% |
| ! | ACGTGATAGCGCATGGAAGT+CGG | + | chr4_4:45697302-45697321 | Msa0683290:CDS | 50.0% |
| TGGCTGCAACTCCATTGCTT+TGG | + | chr4_4:45697659-45697678 | Msa0683290:CDS | 50.0% | |
| ! | CAGCAATGCGTACGAGTTGA+TGG | + | chr4_4:45697959-45697978 | Msa0683290:CDS | 50.0% |
| AGGCCAGAGACAATGTGAGT+TGG | + | chr4_4:45698001-45698020 | Msa0683290:CDS | 50.0% | |
| CCTCCAACTCACATTGTCTC+TGG | - | chr4_4:45698007-45698026 | None:intergenic | 50.0% | |
| ! | CCAGAGACAATGTGAGTTGG+AGG | + | chr4_4:45698004-45698023 | Msa0683290:CDS | 50.0% |
| GCACGCGGAGAAACTTTCTT+AGG | - | chr4_4:45696467-45696486 | None:intergenic | 50.0% | |
| ! | TGACTTGCGATCAGCGAGTT+TGG | - | chr4_4:45696582-45696601 | None:intergenic | 50.0% |
| GCAAGACTTCGAGGAATCCA+AGG | + | chr4_4:45697170-45697189 | Msa0683290:CDS | 50.0% | |
| TAGGGCTAAGAGTTGCTCCT+TGG | - | chr4_4:45697190-45697209 | None:intergenic | 50.0% | |
| GAGCAACTCTTAGCCCTATC+TGG | + | chr4_4:45697192-45697211 | Msa0683290:CDS | 50.0% | |
| ! | CAGAAGAACGTGATAGCGCA+TGG | + | chr4_4:45697295-45697314 | Msa0683290:CDS | 50.0% |
| ! | ACGTGATAGCGCATGGAAGT+CGG | + | chr4_4:45697302-45697321 | Msa0683290:CDS | 50.0% |
| TGGCTGCAACTCCATTGCTT+TGG | + | chr4_4:45697659-45697678 | Msa0683290:CDS | 50.0% | |
| ! | CAGCAATGCGTACGAGTTGA+TGG | + | chr4_4:45697959-45697978 | Msa0683290:CDS | 50.0% |
| AGGCCAGAGACAATGTGAGT+TGG | + | chr4_4:45698001-45698020 | Msa0683290:CDS | 50.0% | |
| CCTCCAACTCACATTGTCTC+TGG | - | chr4_4:45698007-45698026 | None:intergenic | 50.0% | |
| ! | CCAGAGACAATGTGAGTTGG+AGG | + | chr4_4:45698004-45698023 | Msa0683290:CDS | 50.0% |
| ACCTCAGGAACTGGGCTTCT+GGG | - | chr4_4:45696605-45696624 | None:intergenic | 55.0% | |
| TACCTCAGGAACTGGGCTTC+TGG | - | chr4_4:45696606-45696625 | None:intergenic | 55.0% | |
| GCAAGCTCAGCAAGACTTCG+AGG | + | chr4_4:45697161-45697180 | Msa0683290:CDS | 55.0% | |
| GACGTTGCGAGAGACGTAGA+TGG | + | chr4_4:45697639-45697658 | Msa0683290:CDS | 55.0% | |
| ACCTCAGGAACTGGGCTTCT+GGG | - | chr4_4:45696605-45696624 | None:intergenic | 55.0% | |
| TACCTCAGGAACTGGGCTTC+TGG | - | chr4_4:45696606-45696625 | None:intergenic | 55.0% | |
| GCAAGCTCAGCAAGACTTCG+AGG | + | chr4_4:45697161-45697180 | Msa0683290:CDS | 55.0% | |
| GACGTTGCGAGAGACGTAGA+TGG | + | chr4_4:45697639-45697658 | Msa0683290:CDS | 55.0% | |
| CTCAGTTGGCGTACAGCACG+CGG | - | chr4_4:45696482-45696501 | None:intergenic | 60.0% | |
| ACCCAGAAGCCCAGTTCCTG+AGG | + | chr4_4:45696601-45696620 | Msa0683290:intron | 60.0% | |
| CTCAGTTGGCGTACAGCACG+CGG | - | chr4_4:45696482-45696501 | None:intergenic | 60.0% | |
| ACCCAGAAGCCCAGTTCCTG+AGG | + | chr4_4:45696601-45696620 | Msa0683290:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 45696443 | 45698097 | 45696443 | ID=Msa0683290;Name=Msa0683290 |
| chr4_4 | mRNA | 45696443 | 45698097 | 45696443 | ID=Msa0683290-mRNA-1;Parent=Msa0683290;Name=Msa0683290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0|0|2|0|399 |
| chr4_4 | exon | 45696443 | 45696597 | 45696443 | ID=Msa0683290-mRNA-1:exon:11216;Parent=Msa0683290-mRNA-1 |
| chr4_4 | exon | 45697056 | 45698097 | 45697056 | ID=Msa0683290-mRNA-1:exon:11217;Parent=Msa0683290-mRNA-1 |
| chr4_4 | CDS | 45696443 | 45696597 | 45696443 | ID=Msa0683290-mRNA-1:cds;Parent=Msa0683290-mRNA-1 |
| chr4_4 | CDS | 45697056 | 45698097 | 45697056 | ID=Msa0683290-mRNA-1:cds;Parent=Msa0683290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
