Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546500 | XP_003606349.2 | 96.678 | 301 | 10 | 0 | 1 | 301 | 1 | 301 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546500 | sp|E3VXF2|SGO1_ORYSJ | 42.453 | 106 | 51 | 2 | 21 | 126 | 32 | 127 | 2.34e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546500 | G7JNB6 | 96.678 | 301 | 10 | 0 | 1 | 301 | 1 | 301 | 0.0 | 590 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0546500 | 0.822021 | 2.960563e-53 | -8.615850e-47 |
| Msa0021500 | Msa0546500 | 0.851245 | 1.006030e-60 | -8.615850e-47 |
| Msa0028420 | Msa0546500 | 0.801836 | 7.462083e-49 | -8.615850e-47 |
| Msa0036870 | Msa0546500 | 0.827384 | 1.611466e-54 | -8.615850e-47 |
| Msa0042610 | Msa0546500 | 0.807174 | 5.749511e-50 | -8.615850e-47 |
| Msa0052480 | Msa0546500 | 0.800281 | 1.551006e-48 | -8.615850e-47 |
| Msa0054690 | Msa0546500 | 0.829518 | 4.922728e-55 | -8.615850e-47 |
| Msa0076250 | Msa0546500 | 0.804951 | 1.688268e-49 | -8.615850e-47 |
| Msa0081050 | Msa0546500 | 0.806680 | 7.314571e-50 | -8.615850e-47 |
| Msa0081520 | Msa0546500 | 0.815477 | 9.062101e-52 | -8.615850e-47 |
| Msa0090400 | Msa0546500 | 0.809326 | 1.999568e-50 | -8.615850e-47 |
| Msa0124280 | Msa0546500 | 0.831281 | 1.824630e-55 | -8.615850e-47 |
| Msa0125550 | Msa0546500 | 0.824568 | 7.523936e-54 | -8.615850e-47 |
| Msa0131900 | Msa0546500 | 0.814561 | 1.447229e-51 | -8.615850e-47 |
| Msa0136650 | Msa0546500 | 0.828416 | 9.100560e-55 | -8.615850e-47 |
| Msa0168650 | Msa0546500 | 0.820643 | 6.153950e-53 | -8.615850e-47 |
| Msa0175730 | Msa0546500 | 0.804394 | 2.206090e-49 | -8.615850e-47 |
| Msa0186920 | Msa0546500 | 0.808808 | 2.582398e-50 | -8.615850e-47 |
| Msa0190570 | Msa0546500 | 0.808863 | 2.513124e-50 | -8.615850e-47 |
| Msa0225100 | Msa0546500 | 0.820558 | 6.436610e-53 | -8.615850e-47 |
| Msa0225460 | Msa0546500 | 0.810604 | 1.061071e-50 | -8.615850e-47 |
| Msa0225680 | Msa0546500 | 0.802103 | 6.576331e-49 | -8.615850e-47 |
| Msa0225860 | Msa0546500 | 0.817818 | 2.706573e-52 | -8.615850e-47 |
| Msa0230740 | Msa0546500 | 0.812576 | 3.954970e-51 | -8.615850e-47 |
| Msa0230750 | Msa0546500 | 0.801056 | 1.077760e-48 | -8.615850e-47 |
| Msa0371170 | Msa0546500 | 0.806730 | 7.137220e-50 | -8.615850e-47 |
| Msa0378720 | Msa0546500 | 0.807466 | 4.985538e-50 | -8.615850e-47 |
| Msa0380620 | Msa0546500 | 0.839317 | 1.703815e-57 | -8.615850e-47 |
| Msa0403970 | Msa0546500 | 0.807153 | 5.810098e-50 | -8.615850e-47 |
| Msa0410650 | Msa0546500 | 0.802049 | 6.745974e-49 | -8.615850e-47 |
| Msa0417880 | Msa0546500 | 0.813375 | 2.642835e-51 | -8.615850e-47 |
| Msa0419700 | Msa0546500 | 0.801254 | 9.821836e-49 | -8.615850e-47 |
| Msa0428370 | Msa0546500 | 0.800104 | 1.685683e-48 | -8.615850e-47 |
| Msa0430260 | Msa0546500 | 0.827281 | 1.706412e-54 | -8.615850e-47 |
| Msa0463060 | Msa0546500 | 0.814303 | 1.649956e-51 | -8.615850e-47 |
| Msa0474730 | Msa0546500 | 0.810415 | 1.165853e-50 | -8.615850e-47 |
| Msa0239570 | Msa0546500 | 0.811520 | 6.720764e-51 | -8.615850e-47 |
| Msa0248970 | Msa0546500 | 0.813239 | 2.831218e-51 | -8.615850e-47 |
| Msa0261340 | Msa0546500 | 0.812361 | 4.407022e-51 | -8.615850e-47 |
| Msa0267110 | Msa0546500 | 0.816988 | 4.162090e-52 | -8.615850e-47 |
| Msa0287740 | Msa0546500 | 0.836213 | 1.067560e-56 | -8.615850e-47 |
| Msa0292330 | Msa0546500 | 0.820237 | 7.626652e-53 | -8.615850e-47 |
| Msa0292400 | Msa0546500 | 0.812874 | 3.404074e-51 | -8.615850e-47 |
| Msa0298470 | Msa0546500 | 0.800681 | 1.285932e-48 | -8.615850e-47 |
| Msa0300270 | Msa0546500 | 0.808061 | 3.725788e-50 | -8.615850e-47 |
| Msa0330380 | Msa0546500 | 0.805037 | 1.619543e-49 | -8.615850e-47 |
| Msa0337700 | Msa0546500 | 0.803499 | 3.386739e-49 | -8.615850e-47 |
| Msa0340500 | Msa0546500 | 0.814717 | 1.336387e-51 | -8.615850e-47 |
| Msa0500380 | Msa0546500 | 0.801389 | 9.212914e-49 | -8.615850e-47 |
| Msa0507680 | Msa0546500 | 0.803923 | 2.764398e-49 | -8.615850e-47 |
| Msa0527550 | Msa0546500 | 0.804525 | 2.071762e-49 | -8.615850e-47 |
| Msa0527860 | Msa0546500 | 0.813691 | 2.251688e-51 | -8.615850e-47 |
| Msa0532070 | Msa0546500 | 0.801617 | 8.275687e-49 | -8.615850e-47 |
| Msa0545340 | Msa0546500 | 0.802920 | 4.461016e-49 | -8.615850e-47 |
| Msa0546500 | Msa0580370 | 0.838246 | 3.223248e-57 | -8.615850e-47 |
| Msa0546500 | Msa0587620 | 0.807890 | 4.051239e-50 | -8.615850e-47 |
| Msa0546500 | Msa0597790 | 0.830636 | 2.626337e-55 | -8.615850e-47 |
| Msa0546500 | Msa0600930 | 0.833351 | 5.605531e-56 | -8.615850e-47 |
| Msa0546500 | Msa0625630 | 0.801029 | 1.092012e-48 | -8.615850e-47 |
| Msa0546500 | Msa0626450 | 0.819768 | 9.763159e-53 | -8.615850e-47 |
| Msa0546500 | Msa0626490 | 0.816941 | 4.265335e-52 | -8.615850e-47 |
| Msa0546500 | Msa0643080 | 0.802738 | 4.865682e-49 | -8.615850e-47 |
| Msa0546500 | Msa0643300 | 0.823821 | 1.126769e-53 | -8.615850e-47 |
| Msa0546500 | Msa0658880 | 0.805684 | 1.185314e-49 | -8.615850e-47 |
| Msa0546500 | Msa0660340 | 0.807433 | 5.066922e-50 | -8.615850e-47 |
| Msa0546500 | Msa0661150 | 0.813009 | 3.179508e-51 | -8.615850e-47 |
| Msa0546500 | Msa0662240 | 0.816960 | 4.224206e-52 | -8.615850e-47 |
| Msa0546500 | Msa0663300 | 0.818148 | 2.279553e-52 | -8.615850e-47 |
| Msa0546500 | Msa0664060 | 0.824157 | 9.398354e-54 | -8.615850e-47 |
| Msa0546500 | Msa0664600 | 0.815143 | 1.074867e-51 | -8.615850e-47 |
| Msa0546500 | Msa0682050 | 0.807592 | 4.688738e-50 | -8.615850e-47 |
| Msa0546500 | Msa0683290 | 0.801875 | 7.325680e-49 | -8.615850e-47 |
| Msa0546500 | Msa0683570 | 0.831778 | 1.376031e-55 | -8.615850e-47 |
| Msa0546500 | Msa0689230 | 0.831358 | 1.746620e-55 | -8.615850e-47 |
| Msa0546500 | Msa0689520 | 0.800538 | 1.374959e-48 | -8.615850e-47 |
| Msa0546500 | Msa0691980 | 0.805295 | 1.430096e-49 | -8.615850e-47 |
| Msa0546500 | Msa0710800 | 0.810381 | 1.185521e-50 | -8.615850e-47 |
| Msa0546500 | Msa0724910 | 0.807912 | 4.008579e-50 | -8.615850e-47 |
| Msa0546500 | Msa0741220 | 0.828052 | 1.113576e-54 | -8.615850e-47 |
| Msa0546500 | Msa0742740 | 0.813818 | 2.111412e-51 | -8.615850e-47 |
| Msa0546500 | Msa0754520 | 0.800962 | 1.126991e-48 | -8.615850e-47 |
| Msa0546500 | Msa0770720 | 0.801773 | 7.685883e-49 | -8.615850e-47 |
| Msa0546500 | Msa0779870 | 0.821143 | 4.722869e-53 | -8.615850e-47 |
| Msa0546500 | Msa0795870 | 0.836210 | 1.069496e-56 | -8.615850e-47 |
| Msa0546500 | Msa0815960 | 0.802225 | 6.205230e-49 | -8.615850e-47 |
| Msa0546500 | Msa0823820 | 0.822500 | 2.291768e-53 | -8.615850e-47 |
| Msa0546500 | Msa0833220 | 0.802356 | 5.833631e-49 | -8.615850e-47 |
| Msa0546500 | Msa0833650 | 0.839539 | 1.491882e-57 | -8.615850e-47 |
| Msa0546500 | Msa0863010 | 0.826613 | 2.464256e-54 | -8.615850e-47 |
| Msa0546500 | Msa0945110 | 0.810998 | 8.720302e-51 | -8.615850e-47 |
| Msa0546500 | Msa0967870 | 0.824514 | 7.744527e-54 | -8.615850e-47 |
| Msa0546500 | Msa1019430 | 0.843010 | 1.822530e-58 | -8.615850e-47 |
| Msa0546500 | Msa1019470 | 0.825453 | 4.650018e-54 | -8.615850e-47 |
| Msa0546500 | Msa1020480 | 0.814627 | 1.399424e-51 | -8.615850e-47 |
| Msa0546500 | Msa1020510 | 0.821641 | 3.624413e-53 | -8.615850e-47 |
| Msa0546500 | Msa1020670 | 0.806827 | 6.809594e-50 | -8.615850e-47 |
| Msa0546500 | Msa1024100 | 0.822050 | 2.914477e-53 | -8.615850e-47 |
| Msa0546500 | Msa1028100 | 0.810877 | 9.264395e-51 | -8.615850e-47 |
| Msa0546500 | Msa1132840 | 0.836649 | 8.266306e-57 | -8.615850e-47 |
| Msa0546500 | Msa1140210 | 0.819131 | 1.364287e-52 | -8.615850e-47 |
| Msa0546500 | Msa1151910 | 0.800851 | 1.187231e-48 | -8.615850e-47 |
| Msa0546500 | Msa1198250 | 0.802169 | 6.372651e-49 | -8.615850e-47 |
| Msa0546500 | Msa1215870 | 0.802870 | 4.569849e-49 | -8.615850e-47 |
| Msa0546500 | Msa1263490 | 0.817239 | 3.655845e-52 | -8.615850e-47 |
| Msa0546500 | Msa1277220 | 0.803090 | 4.115404e-49 | -8.615850e-47 |
| Msa0546500 | Msa1306680 | 0.809228 | 2.098944e-50 | -8.615850e-47 |
| Msa0546500 | Msa1306910 | 0.800920 | 1.149326e-48 | -8.615850e-47 |
| Msa0546500 | Msa1315590 | 0.801200 | 1.007085e-48 | -8.615850e-47 |
| Msa0546500 | Msa1321340 | 0.807401 | 5.147720e-50 | -8.615850e-47 |
| Msa0546500 | Msa1343180 | 0.803812 | 2.915380e-49 | -8.615850e-47 |
| Msa0546500 | Msa1358220 | 0.825364 | 4.879319e-54 | -8.615850e-47 |
| Msa0546500 | Msa1359690 | 0.817575 | 3.070736e-52 | -8.615850e-47 |
| Msa0546500 | Msa1370010 | 0.804059 | 2.590896e-49 | -8.615850e-47 |
| Msa0546500 | Msa1372230 | 0.800517 | 1.388513e-48 | -8.615850e-47 |
| Msa0546500 | Msa1387620 | 0.806551 | 7.787556e-50 | -8.615850e-47 |
| Msa0546500 | Msa1430240 | 0.811097 | 8.300004e-51 | -8.615850e-47 |
| Msa0546500 | Msa1437930 | 0.801399 | 9.172863e-49 | -8.615850e-47 |
| Msa0546500 | Msa1440960 | 0.814842 | 1.253946e-51 | -8.615850e-47 |
| Msa0546500 | Msa1449480 | 0.812927 | 3.313355e-51 | -8.615850e-47 |
| Msa0546500 | Msa1454140 | 0.827085 | 1.901085e-54 | -8.615850e-47 |
| Msa0546500 | Msa1465440 | 0.852191 | 5.426700e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546500 | MtrunA17_Chr4g0028171 | 96.678 | 301 | 10 | 0 | 1 | 301 | 1 | 301 | 0.0 | 590 |
| Msa0546500 | MtrunA17_Chr1g0197141 | 38.614 | 101 | 59 | 1 | 202 | 299 | 295 | 395 | 8.44e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546500 | AT3G44960.1 | 37.329 | 292 | 148 | 8 | 8 | 289 | 2 | 268 | 3.10e-35 | 128 |
| Msa0546500 | AT3G44960.3 | 38.305 | 295 | 142 | 11 | 8 | 289 | 2 | 269 | 8.58e-34 | 124 |
| Msa0546500 | AT3G44960.2 | 36.395 | 294 | 153 | 10 | 8 | 289 | 2 | 273 | 1.51e-31 | 119 |
| Msa0546500 | AT5G04320.3 | 44.211 | 95 | 53 | 0 | 32 | 126 | 3 | 97 | 1.84e-16 | 79.7 |
| Msa0546500 | AT5G04320.4 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 2.69e-16 | 79.3 |
| Msa0546500 | AT5G04320.2 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 2.69e-16 | 79.3 |
| Msa0546500 | AT5G04320.5 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 2.69e-16 | 79.3 |
| Msa0546500 | AT5G04320.1 | 52.174 | 69 | 33 | 0 | 58 | 126 | 2 | 70 | 2.83e-15 | 76.3 |
Find 48 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGGGCTGCTTTGATTAA+TGG | 0.208431 | 4_1:-38237909 | Msa0546500:CDS |
| CTTCTCATCTTGATATTTAG+AGG | 0.230253 | 4_1:+38235958 | None:intergenic |
| AGAAAACTTGTTTGAAATAG+AGG | 0.337726 | 4_1:-38236148 | Msa0546500:CDS |
| TGCATCATTATCACAATTAC+AGG | 0.352256 | 4_1:-38237242 | Msa0546500:intron |
| CATCATCATTGCTAATTCTC+GGG | 0.358143 | 4_1:+38237089 | None:intergenic |
| GAAGCACCAAGGCATTCTTT+TGG | 0.363233 | 4_1:-38236030 | Msa0546500:CDS |
| AGAAGTTGCAAATGCAAAAC+TGG | 0.370105 | 4_1:-38238570 | Msa0546500:CDS |
| TCATCATCATTGCTAATTCT+CGG | 0.397082 | 4_1:+38237088 | None:intergenic |
| GCCGACGGAGAATCAGAAAA+TGG | 0.397671 | 4_1:-38239208 | Msa0546500:CDS |
| TTTCTAGAGGTTCGTGTACA+TGG | 0.406909 | 4_1:+38236166 | None:intergenic |
| ATTTAGAGGAACCTCTTTGT+AGG | 0.408254 | 4_1:+38235972 | None:intergenic |
| AACCGCTAACATGAGACTAT+TGG | 0.409768 | 4_1:+38238534 | None:intergenic |
| CAATATGCTATCACTCAATC+TGG | 0.413239 | 4_1:-38236120 | Msa0546500:CDS |
| AAGGAGTGAAGAGGAAGCAA+AGG | 0.438648 | 4_1:+38239341 | None:intergenic |
| TAGCATAAACTAAATATAGT+AGG | 0.448203 | 4_1:-38235933 | Msa0546500:exon |
| AAGAAAAGGTTAAAGACAAT+AGG | 0.449030 | 4_1:-38236900 | Msa0546500:intron |
| GTATGATACAAAATCAGAAA+TGG | 0.472448 | 4_1:+38235892 | None:intergenic |
| TACCTTGAGGAGTTGTTGAA+TGG | 0.485020 | 4_1:+38239068 | None:intergenic |
| GTGTTGAGAGAAAGAGAAGA+AGG | 0.489426 | 4_1:+38239322 | None:intergenic |
| GTTTGACCAGGAGACGCGTT+AGG | 0.490458 | 4_1:-38237054 | Msa0546500:CDS |
| AAAGAATAAAAGCAAAGAAA+AGG | 0.491272 | 4_1:-38236914 | Msa0546500:CDS |
| GTTGCGAAGGGCAGCTGAGA+AGG | 0.508038 | 4_1:-38236001 | Msa0546500:CDS |
| GAGACATTCTGCTGCGTCAA+AGG | 0.508047 | 4_1:-38236190 | Msa0546500:CDS |
| GTCCAATAGTCTCATGTTAG+CGG | 0.514665 | 4_1:-38238536 | Msa0546500:intron |
| AGAGGAACCTCTTTGTAGGA+TGG | 0.515473 | 4_1:+38235976 | None:intergenic |
| ACAAAATCAGAAATGGCTAA+AGG | 0.517962 | 4_1:+38235899 | None:intergenic |
| TCTACTCCTAACGCGTCTCC+TGG | 0.523467 | 4_1:+38237048 | None:intergenic |
| TGGAAACAGCTTCAAAATGC+AGG | 0.529427 | 4_1:-38237889 | Msa0546500:intron |
| AAAGAGAAGAAGGAGTGAAG+AGG | 0.532321 | 4_1:+38239332 | None:intergenic |
| TGCAGGAGCTTAACTTGGGG+AGG | 0.533630 | 4_1:-38238069 | Msa0546500:intron |
| CGAACAGTAAAATGATAGAA+AGG | 0.538872 | 4_1:-38238630 | Msa0546500:intron |
| ACTGAAAGAAGAGAAAGCTC+TGG | 0.539195 | 4_1:-38236063 | Msa0546500:CDS |
| TTCTCAGCTGCCCTTCGCAA+CGG | 0.546920 | 4_1:+38236003 | None:intergenic |
| CTCTAAATATCAAGATGAGA+AGG | 0.558638 | 4_1:-38235957 | Msa0546500:CDS |
| GCAGGAGCTTAACTTGGGGA+GGG | 0.566011 | 4_1:-38238068 | Msa0546500:intron |
| GGTCTTCCAAAAGAATGCCT+TGG | 0.584014 | 4_1:+38236024 | None:intergenic |
| TTCCATTCAACAACTCCTCA+AGG | 0.584322 | 4_1:-38239070 | Msa0546500:intron |
| ATCATCATTGCTAATTCTCG+GGG | 0.585616 | 4_1:+38237090 | None:intergenic |
| AGTAAAATGATAGAAAGGAG+TGG | 0.612385 | 4_1:-38238625 | Msa0546500:CDS |
| TGTTCAATTTACAGTTACAA+CGG | 0.618361 | 4_1:-38239244 | Msa0546500:five_prime_UTR |
| GGAAGCAGTAGAAGAACCAA+TGG | 0.622754 | 4_1:+38236939 | None:intergenic |
| AAGGATACTTTCTATCCGCA+AGG | 0.627474 | 4_1:+38238932 | None:intergenic |
| AAAATGGCGAAGCAATCGAT+CGG | 0.646647 | 4_1:-38239192 | Msa0546500:CDS |
| GAATTTAATCAACCTCCTTG+CGG | 0.647090 | 4_1:-38238947 | Msa0546500:CDS |
| GAAGGTTCCATCCTACAAAG+AGG | 0.659677 | 4_1:-38235983 | Msa0546500:CDS |
| GATACTTTCTATCCGCAAGG+AGG | 0.691506 | 4_1:+38238935 | None:intergenic |
| GGTACTAACTAACATGCCGA+CGG | 0.717552 | 4_1:-38239223 | Msa0546500:exon |
| GTTTAAGAAATGAAGCACCA+AGG | 0.725235 | 4_1:-38236041 | Msa0546500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTATATATTAAA+AGG | - | chr4_1:38236949-38236968 | Msa0546500:intron | 0.0% |
| !!! | TTTCAATTTAAAATAATGAA+AGG | + | chr4_1:38236288-38236307 | None:intergenic | 10.0% |
| !!! | ACTTTTTAATTTGATTTTAA+CGG | - | chr4_1:38237225-38237244 | Msa0546500:intron | 10.0% |
| !!! | AATCATAATTTAAAATAACT+TGG | + | chr4_1:38237636-38237655 | None:intergenic | 10.0% |
| !! | AAAAAATTGAGATGATTATA+CGG | + | chr4_1:38236869-38236888 | None:intergenic | 15.0% |
| !! | ATAAATTTGACAAATATGTT+AGG | - | chr4_1:38236977-38236996 | Msa0546500:intron | 15.0% |
| !! | TAAATTTGACAAATATGTTA+GGG | - | chr4_1:38236978-38236997 | Msa0546500:intron | 15.0% |
| !!! | AAAATTGATTTGAATATGTT+TGG | + | chr4_1:38237415-38237434 | None:intergenic | 15.0% |
| !!! | AATATATCATATTGACTTTG+AGG | - | chr4_1:38237069-38237088 | Msa0546500:CDS | 20.0% |
| !!! | ATATATCATATTGACTTTGA+GGG | - | chr4_1:38237070-38237089 | Msa0546500:CDS | 20.0% |
| !! | AAACTTAGTAACTAAAAATC+AGG | + | chr4_1:38237347-38237366 | None:intergenic | 20.0% |
| !! | TAATAGATGAACTTCAATAA+TGG | - | chr4_1:38237442-38237461 | Msa0546500:intron | 20.0% |
| !! | AATAGATGAACTTCAATAAT+GGG | - | chr4_1:38237443-38237462 | Msa0546500:intron | 20.0% |
| !!! | CATAATTTAAAATAACTTGG+CGG | + | chr4_1:38237633-38237652 | None:intergenic | 20.0% |
| !! | TTTATTGATGTATCTTTCAA+TGG | - | chr4_1:38237681-38237700 | Msa0546500:intron | 20.0% |
| !!! | TGATAATGATGCATTATTTT+CGG | + | chr4_1:38237949-38237968 | None:intergenic | 20.0% |
| !! | ATATGAGAAAAATAAGTGAA+GGG | + | chr4_1:38237997-38238016 | None:intergenic | 20.0% |
| !! | AATATGAGAAAAATAAGTGA+AGG | + | chr4_1:38237998-38238017 | None:intergenic | 20.0% |
| !!! | TTCACTTATTTTTCTCATAT+TGG | - | chr4_1:38237997-38238016 | Msa0546500:intron | 20.0% |
| !!! | TTTTTCTTTGTCGTATAATT+TGG | - | chr4_1:38238047-38238066 | Msa0546500:intron | 20.0% |
| !! | AAAGAATAAAAGCAAAGAAA+AGG | - | chr4_1:38238284-38238303 | Msa0546500:intron | 20.0% |
| !!! | AAATTATTATTTTGGAACTC+TGG | + | chr4_1:38238424-38238443 | None:intergenic | 20.0% |
| !! | TGAAAAATTGTTGTGTTAAT+AGG | - | chr4_1:38238448-38238467 | Msa0546500:intron | 20.0% |
| !! | TAGCATAAACTAAATATAGT+AGG | - | chr4_1:38239265-38239284 | Msa0546500:five_prime_UTR | 20.0% |
| ! | TGTTCAATTTACAGTTACAA+CGG | - | chr4_1:38235954-38235973 | Msa0546500:CDS | 25.0% |
| ! | CATACTCAAATAAACAAACA+CGG | + | chr4_1:38236403-38236422 | None:intergenic | 25.0% |
| ! | TTGTTTATTTGAGTATGTGT+TGG | - | chr4_1:38236406-38236425 | Msa0546500:intron | 25.0% |
| ! | AAAATATTGAAATTGCGTTG+TGG | - | chr4_1:38236442-38236461 | Msa0546500:intron | 25.0% |
| !!! | TTTTGTTTGTTTCCTTGATT+TGG | - | chr4_1:38236543-38236562 | Msa0546500:intron | 25.0% |
| !!! | TACTGATTTTGTGTTTCTTA+TGG | - | chr4_1:38237099-38237118 | Msa0546500:CDS | 25.0% |
| !! | TAATCAATTCGAGTTCAAAA+GGG | + | chr4_1:38237194-38237213 | None:intergenic | 25.0% |
| !! | ATAATCAATTCGAGTTCAAA+AGG | + | chr4_1:38237195-38237214 | None:intergenic | 25.0% |
| !!! | ATTGATTTGAATATGTTTGG+AGG | + | chr4_1:38237412-38237431 | None:intergenic | 25.0% |
| ! | GTTAATCTTTCCATAAAGAA+GGG | + | chr4_1:38237611-38237630 | None:intergenic | 25.0% |
| !!! | ACTTATTTTTCTCATATTGG+AGG | - | chr4_1:38238000-38238019 | Msa0546500:intron | 25.0% |
| ! | ATACGACAAAGAAAAAAATG+AGG | + | chr4_1:38238043-38238062 | None:intergenic | 25.0% |
| ! | AATTCTGCTTAACTTTGTTA+TGG | - | chr4_1:38238226-38238245 | Msa0546500:intron | 25.0% |
| !!! | TTCTTTGCTTTTATTCTTTC+TGG | + | chr4_1:38238283-38238302 | None:intergenic | 25.0% |
| ! | AAGAAAAGGTTAAAGACAAT+AGG | - | chr4_1:38238298-38238317 | Msa0546500:intron | 25.0% |
| ! | CACATAAGTATATAGTGATA+CGG | - | chr4_1:38238747-38238766 | Msa0546500:intron | 25.0% |
| !! | ATTTCAAACAAGTTTTCTAG+AGG | + | chr4_1:38239048-38239067 | None:intergenic | 25.0% |
| !! | AGAAAACTTGTTTGAAATAG+AGG | - | chr4_1:38239050-38239069 | Msa0546500:intron | 25.0% |
| ! | GTATGATACAAAATCAGAAA+TGG | + | chr4_1:38239309-38239328 | None:intergenic | 25.0% |
| CTTAATGCGAAAAAGACTTT+CGG | - | chr4_1:38236032-38236051 | Msa0546500:CDS | 30.0% | |
| TGTATGTTATTGTTACCTTG+AGG | + | chr4_1:38236146-38236165 | None:intergenic | 30.0% | |
| !!! | CTGTTTGAGTTTTTTTTGAC+AGG | - | chr4_1:38236221-38236240 | Msa0546500:intron | 30.0% |
| ! | CGATATTTTATGTGCAATCT+CGG | - | chr4_1:38236347-38236366 | Msa0546500:intron | 30.0% |
| AACAGAAACTCAATTACACA+AGG | + | chr4_1:38236469-38236488 | None:intergenic | 30.0% | |
| ATTGAGTTTCTGTTTCAAGA+TGG | - | chr4_1:38236475-38236494 | Msa0546500:intron | 30.0% | |
| TTGAGTTTCTGTTTCAAGAT+GGG | - | chr4_1:38236476-38236495 | Msa0546500:intron | 30.0% | |
| CGAACAGTAAAATGATAGAA+AGG | - | chr4_1:38236568-38236587 | Msa0546500:intron | 30.0% | |
| AGTAAAATGATAGAAAGGAG+TGG | - | chr4_1:38236573-38236592 | Msa0546500:intron | 30.0% | |
| TCTCAAATTATTACCTGTGT+CGG | - | chr4_1:38236812-38236831 | Msa0546500:intron | 30.0% | |
| !! | TTTCTTATGGTTGATTTTGC+AGG | - | chr4_1:38237112-38237131 | Msa0546500:CDS | 30.0% |
| GAAAAGAAAAAGGAATTCTG+AGG | + | chr4_1:38237172-38237191 | None:intergenic | 30.0% | |
| GTTCAAAAGGGAAAAGAAAA+AGG | + | chr4_1:38237182-38237201 | None:intergenic | 30.0% | |
| TATGTGTAAGAAGTAGTGTT+TGG | - | chr4_1:38237478-38237497 | Msa0546500:intron | 30.0% | |
| ! | CTATTCTTTTCCCTTCTTTA+TGG | - | chr4_1:38237598-38237617 | Msa0546500:intron | 30.0% |
| GGTTAATCTTTCCATAAAGA+AGG | + | chr4_1:38237612-38237631 | None:intergenic | 30.0% | |
| TCATTGTACTCGATCTAAAA+CGG | + | chr4_1:38237769-38237788 | None:intergenic | 30.0% | |
| TGCATCATTATCACAATTAC+AGG | - | chr4_1:38237956-38237975 | Msa0546500:intron | 30.0% | |
| TCTTTGTCGTATAATTTGGT+TGG | - | chr4_1:38238051-38238070 | Msa0546500:intron | 30.0% | |
| TCATCATCATTGCTAATTCT+CGG | + | chr4_1:38238113-38238132 | None:intergenic | 30.0% | |
| ! | AAAAACAATGTTGTTTGACC+AGG | - | chr4_1:38238132-38238151 | Msa0546500:intron | 30.0% |
| CAAAATATGTCAACGAAGAA+GGG | + | chr4_1:38238193-38238212 | None:intergenic | 30.0% | |
| AATTGCAGAAGAAACTTATG+AGG | - | chr4_1:38238654-38238673 | Msa0546500:intron | 30.0% | |
| ATTCGTGCATTTCATATCAA+TGG | + | chr4_1:38238718-38238737 | None:intergenic | 30.0% | |
| TCACTATATACTTATGTGGT+AGG | + | chr4_1:38238745-38238764 | None:intergenic | 30.0% | |
| CGTATCACTATATACTTATG+TGG | + | chr4_1:38238749-38238768 | None:intergenic | 30.0% | |
| CATGCGTTAATAGCATTTAA+TGG | - | chr4_1:38238806-38238825 | Msa0546500:intron | 30.0% | |
| TTAATGGAAGACACTAATAG+AGG | - | chr4_1:38238822-38238841 | Msa0546500:intron | 30.0% | |
| TAATGGAAGACACTAATAGA+GGG | - | chr4_1:38238823-38238842 | Msa0546500:intron | 30.0% | |
| TTGTAACGTGTCAGTAAAAA+TGG | + | chr4_1:38238850-38238869 | None:intergenic | 30.0% | |
| !!! | AAGTTTCTCTTTTTTTGCAC+AGG | - | chr4_1:38238974-38238993 | Msa0546500:intron | 30.0% |
| CTTCTCATCTTGATATTTAG+AGG | + | chr4_1:38239243-38239262 | None:intergenic | 30.0% | |
| CTCTAAATATCAAGATGAGA+AGG | - | chr4_1:38239241-38239260 | Msa0546500:five_prime_UTR | 30.0% | |
| ACAAAATCAGAAATGGCTAA+AGG | + | chr4_1:38239302-38239321 | None:intergenic | 30.0% | |
| GAATTTAATCAACCTCCTTG+CGG | - | chr4_1:38236251-38236270 | Msa0546500:intron | 35.0% | |
| TCAAATAAACAAACACGGAG+TGG | + | chr4_1:38236398-38236417 | None:intergenic | 35.0% | |
| TTACTGTTCGAACCAAATCA+AGG | + | chr4_1:38236558-38236577 | None:intergenic | 35.0% | |
| AGAAGTTGCAAATGCAAAAC+TGG | - | chr4_1:38236628-38236647 | Msa0546500:intron | 35.0% | |
| ! | GCATTGACACTTCTTATCAA+AGG | - | chr4_1:38236714-38236733 | Msa0546500:intron | 35.0% |
| TGTTTGTGTCTTTGCTTAGT+AGG | - | chr4_1:38236835-38236854 | Msa0546500:intron | 35.0% | |
| TGCATGTTTCAGTCTACTTT+AGG | - | chr4_1:38236909-38236928 | Msa0546500:CDS | 35.0% | |
| GCATGTTTCAGTCTACTTTA+GGG | - | chr4_1:38236910-38236929 | Msa0546500:CDS | 35.0% | |
| ! | ATTTTGCAGGAGCTTAACTT+GGG | - | chr4_1:38237125-38237144 | Msa0546500:intron | 35.0% |
| TGTGTAGAAAGTTTGTCTCT+TGG | - | chr4_1:38237509-38237528 | Msa0546500:intron | 35.0% | |
| GTGTAGAAAGTTTGTCTCTT+GGG | - | chr4_1:38237510-38237529 | Msa0546500:intron | 35.0% | |
| TCTTATGAAGCTTACCAATG+TGG | - | chr4_1:38237716-38237735 | Msa0546500:intron | 35.0% | |
| CCACATTGATACACTGAATT+TGG | + | chr4_1:38237793-38237812 | None:intergenic | 35.0% | |
| CCAAATTCAGTGTATCAATG+TGG | - | chr4_1:38237790-38237809 | Msa0546500:intron | 35.0% | |
| GCAATATAGGCCTAAAACAA+CGG | - | chr4_1:38237836-38237855 | Msa0546500:intron | 35.0% | |
| !! | AAAAACGGGTTGTTAGAAGA+CGG | + | chr4_1:38237882-38237901 | None:intergenic | 35.0% |
| !!! | TCCACTTTTTCCTGCAAAAA+CGG | + | chr4_1:38237897-38237916 | None:intergenic | 35.0% |
| ATCATCATTGCTAATTCTCG+GGG | + | chr4_1:38238111-38238130 | None:intergenic | 35.0% | |
| CATCATCATTGCTAATTCTC+GGG | + | chr4_1:38238112-38238131 | None:intergenic | 35.0% | |
| GCAAAATATGTCAACGAAGA+AGG | + | chr4_1:38238194-38238213 | None:intergenic | 35.0% | |
| ! | AGGTTAGTTCTTATGCTCAT+TGG | - | chr4_1:38238318-38238337 | Msa0546500:intron | 35.0% |
| ATAGTCCTTGAATTGCGAAT+TGG | - | chr4_1:38238488-38238507 | Msa0546500:intron | 35.0% | |
| ATTTGCCAATTCGCAATTCA+AGG | + | chr4_1:38238496-38238515 | None:intergenic | 35.0% | |
| ACATTAGCCATAGATTCACA+TGG | + | chr4_1:38238617-38238636 | None:intergenic | 35.0% | |
| TTGATCGATGCTCACAATTT+CGG | - | chr4_1:38238913-38238932 | Msa0546500:intron | 35.0% | |
| CAATATGCTATCACTCAATC+TGG | - | chr4_1:38239078-38239097 | Msa0546500:CDS | 35.0% | |
| ! | CTTCTTTCAGTTTTCACAGA+TGG | + | chr4_1:38239126-38239145 | None:intergenic | 35.0% |
| ! | GTTTAAGAAATGAAGCACCA+AGG | - | chr4_1:38239157-38239176 | Msa0546500:CDS | 35.0% |
| ATTTAGAGGAACCTCTTTGT+AGG | + | chr4_1:38239229-38239248 | None:intergenic | 35.0% | |
| AAAGAGAAGAAGGAGTGAAG+AGG | + | chr4_1:38235869-38235888 | None:intergenic | 40.0% | |
| GTGTTGAGAGAAAGAGAAGA+AGG | + | chr4_1:38235879-38235898 | None:intergenic | 40.0% | |
| AAAATGGCGAAGCAATCGAT+CGG | - | chr4_1:38236006-38236025 | Msa0546500:CDS | 40.0% | |
| TTCCATTCAACAACTCCTCA+AGG | - | chr4_1:38236128-38236147 | Msa0546500:CDS | 40.0% | |
| TACCTTGAGGAGTTGTTGAA+TGG | + | chr4_1:38236133-38236152 | None:intergenic | 40.0% | |
| AAGGATACTTTCTATCCGCA+AGG | + | chr4_1:38236269-38236288 | None:intergenic | 40.0% | |
| AGTGGAAAATGTAGTGACTC+AGG | + | chr4_1:38236380-38236399 | None:intergenic | 40.0% | |
| GTCCAATAGTCTCATGTTAG+CGG | - | chr4_1:38236662-38236681 | Msa0546500:intron | 40.0% | |
| AACCGCTAACATGAGACTAT+TGG | + | chr4_1:38236667-38236686 | None:intergenic | 40.0% | |
| TTCAATGCCATCACATGTGT+CGG | + | chr4_1:38236781-38236800 | None:intergenic | 40.0% | |
| GACAAATATGTTAGGGACTG+TGG | - | chr4_1:38236985-38237004 | Msa0546500:intron | 40.0% | |
| AGCACAAATAGTGATGCTTG+AGG | - | chr4_1:38237015-38237034 | Msa0546500:intron | 40.0% | |
| GCACAAATAGTGATGCTTGA+GGG | - | chr4_1:38237016-38237035 | Msa0546500:intron | 40.0% | |
| CACAAATAGTGATGCTTGAG+GGG | - | chr4_1:38237017-38237036 | Msa0546500:intron | 40.0% | |
| ! | GATTTTGCAGGAGCTTAACT+TGG | - | chr4_1:38237124-38237143 | Msa0546500:intron | 40.0% |
| !! | TTTTGCAGGAGCTTAACTTG+GGG | - | chr4_1:38237126-38237145 | Msa0546500:intron | 40.0% |
| TGGAAACAGCTTCAAAATGC+AGG | - | chr4_1:38237309-38237328 | Msa0546500:intron | 40.0% | |
| GCAGTGCAGCAATCAAAAAA+AGG | + | chr4_1:38237550-38237569 | None:intergenic | 40.0% | |
| TTTGATTGCTGCACTGCTTA+AGG | - | chr4_1:38237553-38237572 | Msa0546500:intron | 40.0% | |
| TGTACATAGAATGGCCACAT+TGG | + | chr4_1:38237733-38237752 | None:intergenic | 40.0% | |
| GTGGCCATTCTATGTACAAA+CGG | - | chr4_1:38237735-38237754 | Msa0546500:intron | 40.0% | |
| TAGGCCGTTTGTACATAGAA+TGG | + | chr4_1:38237742-38237761 | None:intergenic | 40.0% | |
| ATTCTATGTACAAACGGCCT+AGG | - | chr4_1:38237741-38237760 | Msa0546500:intron | 40.0% | |
| TCCCCTACAATGTGCAATAT+AGG | - | chr4_1:38237823-38237842 | Msa0546500:intron | 40.0% | |
| GCCTATATTGCACATTGTAG+GGG | + | chr4_1:38237827-38237846 | None:intergenic | 40.0% | |
| GGCCTATATTGCACATTGTA+GGG | + | chr4_1:38237828-38237847 | None:intergenic | 40.0% | |
| AGGCCTATATTGCACATTGT+AGG | + | chr4_1:38237829-38237848 | None:intergenic | 40.0% | |
| AGACGGCCAAAAATAGCAAA+GGG | + | chr4_1:38237865-38237884 | None:intergenic | 40.0% | |
| AAGACGGCCAAAAATAGCAA+AGG | + | chr4_1:38237866-38237885 | None:intergenic | 40.0% | |
| !! | TTCTAACAACCCGTTTTTGC+AGG | - | chr4_1:38237884-38237903 | Msa0546500:intron | 40.0% |
| !!! | CCACTTTTTCCTGCAAAAAC+GGG | + | chr4_1:38237896-38237915 | None:intergenic | 40.0% |
| GGAGATAGACACTGAAAAAG+TGG | - | chr4_1:38237914-38237933 | Msa0546500:CDS | 40.0% | |
| AAGTGAAGGGTTTACAGATC+AGG | + | chr4_1:38237984-38238003 | None:intergenic | 40.0% | |
| !! | TCTCATATTGGAGGCATTGA+TGG | - | chr4_1:38238009-38238028 | Msa0546500:intron | 40.0% |
| !! | ATATTGGAGGCATTGATGGA+TGG | - | chr4_1:38238013-38238032 | Msa0546500:intron | 40.0% |
| ! | CGTATAATTTGGTTGGCTCA+AGG | - | chr4_1:38238058-38238077 | Msa0546500:intron | 40.0% |
| TAGGAGTAGATGTAAGTGCT+AGG | - | chr4_1:38238163-38238182 | Msa0546500:intron | 40.0% | |
| TTATGGAACTTTGCAGCCAT+TGG | - | chr4_1:38238243-38238262 | Msa0546500:intron | 40.0% | |
| TCGTTCAATGAGCTATGCTA+AGG | + | chr4_1:38238347-38238366 | None:intergenic | 40.0% | |
| !! | TTTGGAACTCTGGAATCTCA+TGG | + | chr4_1:38238414-38238433 | None:intergenic | 40.0% |
| TGGAAGGCTACATGTTCATT+TGG | + | chr4_1:38238597-38238616 | None:intergenic | 40.0% | |
| TAGCCTTCCATGTGAATCTA+TGG | - | chr4_1:38238607-38238626 | Msa0546500:CDS | 40.0% | |
| TAGCCATAGATTCACATGGA+AGG | + | chr4_1:38238613-38238632 | None:intergenic | 40.0% | |
| ATAGTGATACGGTATCCAAG+TGG | - | chr4_1:38238758-38238777 | Msa0546500:intron | 40.0% | |
| TGATCGATGCTCACAATTTC+GGG | - | chr4_1:38238914-38238933 | Msa0546500:intron | 40.0% | |
| ! | TTTTGCACAGGAGAAGTTTG+AGG | - | chr4_1:38238986-38239005 | Msa0546500:intron | 40.0% |
| ! | TTTCTAGAGGTTCGTGTACA+TGG | + | chr4_1:38239035-38239054 | None:intergenic | 40.0% |
| ACTGAAAGAAGAGAAAGCTC+TGG | - | chr4_1:38239135-38239154 | Msa0546500:CDS | 40.0% | |
| AAGGAGTGAAGAGGAAGCAA+AGG | + | chr4_1:38235860-38235879 | None:intergenic | 45.0% | |
| GGTACTAACTAACATGCCGA+CGG | - | chr4_1:38235975-38235994 | Msa0546500:CDS | 45.0% | |
| !! | GCCATTTTCTGATTCTCCGT+CGG | + | chr4_1:38235994-38236013 | None:intergenic | 45.0% |
| GATACTTTCTATCCGCAAGG+AGG | + | chr4_1:38236266-38236285 | None:intergenic | 45.0% | |
| TTCGCGTTGTTACAGTCTAG+TGG | - | chr4_1:38236315-38236334 | Msa0546500:intron | 45.0% | |
| AAAGACACAAACACCGACAC+AGG | + | chr4_1:38236828-38236847 | None:intergenic | 45.0% | |
| ! | CACTGCAGCATGAACTTTTG+TGG | - | chr4_1:38237269-38237288 | Msa0546500:CDS | 45.0% |
| ! | TGCAGCATGAACTTTTGTGG+AGG | - | chr4_1:38237272-38237291 | Msa0546500:CDS | 45.0% |
| ! | GCAGCATGAACTTTTGTGGA+GGG | - | chr4_1:38237273-38237292 | Msa0546500:CDS | 45.0% |
| ! | TGGAGGGCTGCTTTGATTAA+TGG | - | chr4_1:38237289-38237308 | Msa0546500:CDS | 45.0% |
| !! | CAAAGGGAGACCGTTGTTTT+AGG | + | chr4_1:38237849-38237868 | None:intergenic | 45.0% |
| !!! | CGGTCTCCCTTTGCTATTTT+TGG | - | chr4_1:38237856-38237875 | Msa0546500:intron | 45.0% |
| !! | CCCGTTTTTGCAGGAAAAAG+TGG | - | chr4_1:38237893-38237912 | Msa0546500:CDS | 45.0% |
| GGAAGCAGTAGAAGAACCAA+TGG | + | chr4_1:38238262-38238281 | None:intergenic | 45.0% | |
| TAGCAGCAGATGTTAACGGA+TGG | + | chr4_1:38238555-38238574 | None:intergenic | 45.0% | |
| CCTCTAGCAGCAGATGTTAA+CGG | + | chr4_1:38238559-38238578 | None:intergenic | 45.0% | |
| TGATACGGTATCCAAGTGGA+TGG | - | chr4_1:38238762-38238781 | Msa0546500:intron | 45.0% | |
| CGAACATATGACCATCCACT+TGG | + | chr4_1:38238776-38238795 | None:intergenic | 45.0% | |
| !! | GAAGCACCAAGGCATTCTTT+TGG | - | chr4_1:38239168-38239187 | Msa0546500:CDS | 45.0% |
| GGTCTTCCAAAAGAATGCCT+TGG | + | chr4_1:38239177-38239196 | None:intergenic | 45.0% | |
| !! | TTTTGGAAGACCGTTGCGAA+GGG | - | chr4_1:38239185-38239204 | Msa0546500:CDS | 45.0% |
| GAAGGTTCCATCCTACAAAG+AGG | - | chr4_1:38239215-38239234 | Msa0546500:exon | 45.0% | |
| AGAGGAACCTCTTTGTAGGA+TGG | + | chr4_1:38239225-38239244 | None:intergenic | 45.0% | |
| !!! | TTCATATTAAATTATTATTT+TGG | + | chr4_1:38238432-38238451 | None:intergenic | 5.0% |
| GCCGACGGAGAATCAGAAAA+TGG | - | chr4_1:38235990-38236009 | Msa0546500:CDS | 50.0% | |
| TTCGACACCGACACATGTGA+TGG | - | chr4_1:38236771-38236790 | Msa0546500:intron | 50.0% | |
| ! | CTCGATCTAAAACGGCTCCT+AGG | + | chr4_1:38237761-38237780 | None:intergenic | 50.0% |
| CCGTTAACATCTGCTGCTAG+AGG | - | chr4_1:38238556-38238575 | Msa0546500:CDS | 50.0% | |
| GAGACATTCTGCTGCGTCAA+AGG | - | chr4_1:38239008-38239027 | Msa0546500:intron | 50.0% | |
| !! | CTTTTGGAAGACCGTTGCGA+AGG | - | chr4_1:38239184-38239203 | Msa0546500:CDS | 50.0% |
| GTGATGCTTGAGGGGCTGAA+TGG | - | chr4_1:38237025-38237044 | Msa0546500:intron | 55.0% | |
| ! | TGCAGGAGCTTAACTTGGGG+AGG | - | chr4_1:38237129-38237148 | Msa0546500:intron | 55.0% |
| ! | GCAGGAGCTTAACTTGGGGA+GGG | - | chr4_1:38237130-38237149 | Msa0546500:intron | 55.0% |
| GTTTGACCAGGAGACGCGTT+AGG | - | chr4_1:38238144-38238163 | Msa0546500:intron | 55.0% | |
| TCTACTCCTAACGCGTCTCC+TGG | + | chr4_1:38238153-38238172 | None:intergenic | 55.0% | |
| TTCTCAGCTGCCCTTCGCAA+CGG | + | chr4_1:38239198-38239217 | None:intergenic | 55.0% | |
| GTTGCGAAGGGCAGCTGAGA+AGG | - | chr4_1:38239197-38239216 | Msa0546500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 38235817 | 38239403 | 38235817 | ID=Msa0546500;Name=Msa0546500 |
| chr4_1 | mRNA | 38235817 | 38239403 | 38235817 | ID=Msa0546500-mRNA-1;Parent=Msa0546500;Name=Msa0546500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=171|1|1|1|1|1|9|131|301 |
| chr4_1 | exon | 38235817 | 38236224 | 38235817 | ID=Msa0546500-mRNA-1:exon:9814;Parent=Msa0546500-mRNA-1 |
| chr4_1 | exon | 38236901 | 38236961 | 38236901 | ID=Msa0546500-mRNA-1:exon:9813;Parent=Msa0546500-mRNA-1 |
| chr4_1 | exon | 38237047 | 38237140 | 38237047 | ID=Msa0546500-mRNA-1:exon:9812;Parent=Msa0546500-mRNA-1 |
| chr4_1 | exon | 38237243 | 38237314 | 38237243 | ID=Msa0546500-mRNA-1:exon:9811;Parent=Msa0546500-mRNA-1 |
| chr4_1 | exon | 38237890 | 38237958 | 38237890 | ID=Msa0546500-mRNA-1:exon:9810;Parent=Msa0546500-mRNA-1 |
| chr4_1 | exon | 38238063 | 38238086 | 38238063 | ID=Msa0546500-mRNA-1:exon:9809;Parent=Msa0546500-mRNA-1 |
| chr4_1 | exon | 38238537 | 38238645 | 38238537 | ID=Msa0546500-mRNA-1:exon:9808;Parent=Msa0546500-mRNA-1 |
| chr4_1 | exon | 38238940 | 38238977 | 38238940 | ID=Msa0546500-mRNA-1:exon:9807;Parent=Msa0546500-mRNA-1 |
| chr4_1 | exon | 38239071 | 38239403 | 38239071 | ID=Msa0546500-mRNA-1:exon:9806;Parent=Msa0546500-mRNA-1 |
| chr4_1 | five_prime_UTR | 38239233 | 38239403 | 38239233 | ID=Msa0546500-mRNA-1:five_prime_utr;Parent=Msa0546500-mRNA-1 |
| chr4_1 | CDS | 38239071 | 38239232 | 38239071 | ID=Msa0546500-mRNA-1:cds;Parent=Msa0546500-mRNA-1 |
| chr4_1 | CDS | 38238940 | 38238977 | 38238940 | ID=Msa0546500-mRNA-1:cds;Parent=Msa0546500-mRNA-1 |
| chr4_1 | CDS | 38238537 | 38238645 | 38238537 | ID=Msa0546500-mRNA-1:cds;Parent=Msa0546500-mRNA-1 |
| chr4_1 | CDS | 38238063 | 38238086 | 38238063 | ID=Msa0546500-mRNA-1:cds;Parent=Msa0546500-mRNA-1 |
| chr4_1 | CDS | 38237890 | 38237958 | 38237890 | ID=Msa0546500-mRNA-1:cds;Parent=Msa0546500-mRNA-1 |
| chr4_1 | CDS | 38237243 | 38237314 | 38237243 | ID=Msa0546500-mRNA-1:cds;Parent=Msa0546500-mRNA-1 |
| chr4_1 | CDS | 38237047 | 38237140 | 38237047 | ID=Msa0546500-mRNA-1:cds;Parent=Msa0546500-mRNA-1 |
| chr4_1 | CDS | 38236901 | 38236961 | 38236901 | ID=Msa0546500-mRNA-1:cds;Parent=Msa0546500-mRNA-1 |
| chr4_1 | CDS | 38235948 | 38236224 | 38235948 | ID=Msa0546500-mRNA-1:cds;Parent=Msa0546500-mRNA-1 |
| chr4_1 | three_prime_UTR | 38235817 | 38235947 | 38235817 | ID=Msa0546500-mRNA-1:three_prime_utr;Parent=Msa0546500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
