Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594310 | XP_013455184.1 | 94.955 | 555 | 27 | 1 | 1 | 555 | 1 | 554 | 0.0 | 980 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594310 | sp|F4ISY0|Y2837_ARATH | 45.961 | 557 | 229 | 15 | 2 | 541 | 3 | 504 | 1.54e-115 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594310 | A0A072UHR5 | 94.955 | 555 | 27 | 1 | 1 | 555 | 1 | 554 | 0.0 | 980 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0594310 | 0.803656 | 3.141601e-49 | -8.615850e-47 |
| Msa0028640 | Msa0594310 | 0.819174 | 1.334155e-52 | -8.615850e-47 |
| Msa0034270 | Msa0594310 | 0.802469 | 5.528764e-49 | -8.615850e-47 |
| Msa0047050 | Msa0594310 | 0.813427 | 2.574165e-51 | -8.615850e-47 |
| Msa0089630 | Msa0594310 | 0.801094 | 1.058893e-48 | -8.615850e-47 |
| Msa0094130 | Msa0594310 | 0.813313 | 2.726551e-51 | -8.615850e-47 |
| Msa0094140 | Msa0594310 | 0.825829 | 3.787502e-54 | -8.615850e-47 |
| Msa0094850 | Msa0594310 | 0.813841 | 2.086804e-51 | -8.615850e-47 |
| Msa0110970 | Msa0594310 | 0.820181 | 7.855717e-53 | -8.615850e-47 |
| Msa0118570 | Msa0594310 | 0.837730 | 4.374616e-57 | -8.615850e-47 |
| Msa0123100 | Msa0594310 | 0.819688 | 1.018470e-52 | -8.615850e-47 |
| Msa0136650 | Msa0594310 | 0.825482 | 4.575379e-54 | -8.615850e-47 |
| Msa0144360 | Msa0594310 | 0.803794 | 2.941183e-49 | -8.615850e-47 |
| Msa0146260 | Msa0594310 | 0.804138 | 2.494445e-49 | -8.615850e-47 |
| Msa0152400 | Msa0594310 | 0.808141 | 3.582550e-50 | -8.615850e-47 |
| Msa0157290 | Msa0594310 | 0.804072 | 2.574193e-49 | -8.615850e-47 |
| Msa0173730 | Msa0594310 | 0.805958 | 1.038232e-49 | -8.615850e-47 |
| Msa0174450 | Msa0594310 | 0.823109 | 1.653131e-53 | -8.615850e-47 |
| Msa0192540 | Msa0594310 | 0.800398 | 1.468275e-48 | -8.615850e-47 |
| Msa0222560 | Msa0594310 | 0.803168 | 3.965136e-49 | -8.615850e-47 |
| Msa0225460 | Msa0594310 | 0.826514 | 2.602362e-54 | -8.615850e-47 |
| Msa0225680 | Msa0594310 | 0.842027 | 3.322101e-58 | -8.615850e-47 |
| Msa0225750 | Msa0594310 | 0.810931 | 9.018368e-51 | -8.615850e-47 |
| Msa0225760 | Msa0594310 | 0.820886 | 5.412417e-53 | -8.615850e-47 |
| Msa0225860 | Msa0594310 | 0.806029 | 1.003213e-49 | -8.615850e-47 |
| Msa0378720 | Msa0594310 | 0.819887 | 9.173510e-53 | -8.615850e-47 |
| Msa0380620 | Msa0594310 | 0.812272 | 4.607898e-51 | -8.615850e-47 |
| Msa0390970 | Msa0594310 | 0.801873 | 7.330876e-49 | -8.615850e-47 |
| Msa0410500 | Msa0594310 | 0.819966 | 8.799053e-53 | -8.615850e-47 |
| Msa0410650 | Msa0594310 | 0.817548 | 3.114277e-52 | -8.615850e-47 |
| Msa0417880 | Msa0594310 | 0.823694 | 1.206754e-53 | -8.615850e-47 |
| Msa0422280 | Msa0594310 | 0.800441 | 1.439269e-48 | -8.615850e-47 |
| Msa0422850 | Msa0594310 | 0.832464 | 9.316202e-56 | -8.615850e-47 |
| Msa0422930 | Msa0594310 | 0.834126 | 3.588203e-56 | -8.615850e-47 |
| Msa0430260 | Msa0594310 | 0.822997 | 1.755999e-53 | -8.615850e-47 |
| Msa0447370 | Msa0594310 | 0.800981 | 1.116665e-48 | -8.615850e-47 |
| Msa0450720 | Msa0594310 | 0.835919 | 1.267915e-56 | -8.615850e-47 |
| Msa0464680 | Msa0594310 | 0.806326 | 8.684278e-50 | -8.615850e-47 |
| Msa0465410 | Msa0594310 | 0.802933 | 4.434429e-49 | -8.615850e-47 |
| Msa0467430 | Msa0594310 | 0.817506 | 3.182506e-52 | -8.615850e-47 |
| Msa0467490 | Msa0594310 | 0.807678 | 4.494486e-50 | -8.615850e-47 |
| Msa0474730 | Msa0594310 | 0.813586 | 2.374286e-51 | -8.615850e-47 |
| Msa0475790 | Msa0594310 | 0.806353 | 8.574240e-50 | -8.615850e-47 |
| Msa0244860 | Msa0594310 | 0.812106 | 5.008746e-51 | -8.615850e-47 |
| Msa0255090 | Msa0594310 | 0.800045 | 1.732238e-48 | -8.615850e-47 |
| Msa0259380 | Msa0594310 | 0.802930 | 4.440928e-49 | -8.615850e-47 |
| Msa0260610 | Msa0594310 | 0.810598 | 1.064577e-50 | -8.615850e-47 |
| Msa0260670 | Msa0594310 | 0.808462 | 3.060887e-50 | -8.615850e-47 |
| Msa0261340 | Msa0594310 | 0.829131 | 6.112249e-55 | -8.615850e-47 |
| Msa0263080 | Msa0594310 | 0.803300 | 3.723198e-49 | -8.615850e-47 |
| Msa0283450 | Msa0594310 | 0.804347 | 2.256860e-49 | -8.615850e-47 |
| Msa0283520 | Msa0594310 | 0.816977 | 4.186405e-52 | -8.615850e-47 |
| Msa0292400 | Msa0594310 | 0.863547 | 2.303234e-64 | -8.615850e-47 |
| Msa0294160 | Msa0594310 | 0.800249 | 1.574928e-48 | -8.615850e-47 |
| Msa0297790 | Msa0594310 | 0.801821 | 7.514481e-49 | -8.615850e-47 |
| Msa0300270 | Msa0594310 | 0.826876 | 2.132777e-54 | -8.615850e-47 |
| Msa0300320 | Msa0594310 | 0.809201 | 2.127401e-50 | -8.615850e-47 |
| Msa0300690 | Msa0594310 | 0.832377 | 9.785064e-56 | -8.615850e-47 |
| Msa0311280 | Msa0594310 | 0.823393 | 1.419005e-53 | -8.615850e-47 |
| Msa0332000 | Msa0594310 | 0.812411 | 4.297188e-51 | -8.615850e-47 |
| Msa0337700 | Msa0594310 | 0.807587 | 4.699667e-50 | -8.615850e-47 |
| Msa0358890 | Msa0594310 | 0.807502 | 4.899488e-50 | -8.615850e-47 |
| Msa0363200 | Msa0594310 | 0.818882 | 1.554321e-52 | -8.615850e-47 |
| Msa0498060 | Msa0594310 | 0.810656 | 1.034175e-50 | -8.615850e-47 |
| Msa0500380 | Msa0594310 | 0.801407 | 9.138711e-49 | -8.615850e-47 |
| Msa0507680 | Msa0594310 | 0.819298 | 1.250173e-52 | -8.615850e-47 |
| Msa0513160 | Msa0594310 | 0.810263 | 1.257292e-50 | -8.615850e-47 |
| Msa0518690 | Msa0594310 | 0.808716 | 2.701986e-50 | -8.615850e-47 |
| Msa0532070 | Msa0594310 | 0.809650 | 1.703756e-50 | -8.615850e-47 |
| Msa0546680 | Msa0594310 | 0.840640 | 7.700831e-58 | -8.615850e-47 |
| Msa0569200 | Msa0594310 | 0.809251 | 2.075590e-50 | -8.615850e-47 |
| Msa0574890 | Msa0594310 | 0.831827 | 1.338450e-55 | -8.615850e-47 |
| Msa0594310 | Msa0616220 | 0.804532 | 2.065034e-49 | -8.615850e-47 |
| Msa0594310 | Msa0626450 | 0.823368 | 1.438297e-53 | -8.615850e-47 |
| Msa0594310 | Msa0626490 | 0.827287 | 1.700674e-54 | -8.615850e-47 |
| Msa0594310 | Msa0634300 | 0.926643 | 3.535263e-91 | -8.615850e-47 |
| Msa0594310 | Msa0639430 | 0.811019 | 8.630220e-51 | -8.615850e-47 |
| Msa0594310 | Msa0643300 | 0.846666 | 1.881416e-59 | -8.615850e-47 |
| Msa0594310 | Msa0664600 | 0.827183 | 1.801271e-54 | -8.615850e-47 |
| Msa0594310 | Msa0677410 | 0.812167 | 4.858662e-51 | -8.615850e-47 |
| Msa0594310 | Msa0682330 | 0.827652 | 1.389873e-54 | -8.615850e-47 |
| Msa0594310 | Msa0683290 | 0.802073 | 6.669725e-49 | -8.615850e-47 |
| Msa0594310 | Msa0683570 | 0.860994 | 1.400950e-63 | -8.615850e-47 |
| Msa0594310 | Msa0704600 | 0.800347 | 1.504204e-48 | -8.615850e-47 |
| Msa0594310 | Msa0718550 | 0.808852 | 2.525881e-50 | -8.615850e-47 |
| Msa0594310 | Msa0730430 | 0.810445 | 1.148747e-50 | -8.615850e-47 |
| Msa0594310 | Msa0736960 | 0.813111 | 3.020069e-51 | -8.615850e-47 |
| Msa0594310 | Msa0737570 | 0.816547 | 5.227113e-52 | -8.615850e-47 |
| Msa0594310 | Msa0742740 | 0.809963 | 1.459324e-50 | -8.615850e-47 |
| Msa0594310 | Msa0754520 | 0.802028 | 6.812564e-49 | -8.615850e-47 |
| Msa0594310 | Msa0770720 | 0.815253 | 1.016125e-51 | -8.615850e-47 |
| Msa0594310 | Msa0823820 | 0.820035 | 8.482600e-53 | -8.615850e-47 |
| Msa0594310 | Msa0824660 | 0.801263 | 9.779712e-49 | -8.615850e-47 |
| Msa0594310 | Msa0828560 | 0.801901 | 7.236672e-49 | -8.615850e-47 |
| Msa0594310 | Msa0856920 | 0.816554 | 5.210114e-52 | -8.615850e-47 |
| Msa0594310 | Msa0861510 | 0.847976 | 8.221553e-60 | -8.615850e-47 |
| Msa0594310 | Msa0861530 | 0.844099 | 9.320888e-59 | -8.615850e-47 |
| Msa0594310 | Msa0861600 | 0.845037 | 5.213015e-59 | -8.615850e-47 |
| Msa0594310 | Msa0863010 | 0.824517 | 7.734093e-54 | -8.615850e-47 |
| Msa0594310 | Msa0880140 | 0.801266 | 9.764332e-49 | -8.615850e-47 |
| Msa0594310 | Msa0930780 | 0.813230 | 2.843026e-51 | -8.615850e-47 |
| Msa0594310 | Msa0945110 | 0.800135 | 1.661445e-48 | -8.615850e-47 |
| Msa0594310 | Msa1019000 | 0.817385 | 3.390023e-52 | -8.615850e-47 |
| Msa0594310 | Msa1019430 | 0.802752 | 4.833815e-49 | -8.615850e-47 |
| Msa0594310 | Msa1019470 | 0.803291 | 3.738756e-49 | -8.615850e-47 |
| Msa0594310 | Msa1020510 | 0.807995 | 3.849874e-50 | -8.615850e-47 |
| Msa0594310 | Msa1045140 | 0.817899 | 2.594888e-52 | -8.615850e-47 |
| Msa0594310 | Msa1050910 | 0.806607 | 7.578667e-50 | -8.615850e-47 |
| Msa0594310 | Msa1085200 | 0.815620 | 8.423298e-52 | -8.615850e-47 |
| Msa0594310 | Msa1108160 | 0.810915 | 9.089638e-51 | -8.615850e-47 |
| Msa0594310 | Msa1111110 | 0.810357 | 1.200115e-50 | -8.615850e-47 |
| Msa0594310 | Msa1113340 | 0.822745 | 2.009452e-53 | -8.615850e-47 |
| Msa0594310 | Msa1140210 | 0.816867 | 4.431750e-52 | -8.615850e-47 |
| Msa0594310 | Msa1151910 | 0.808009 | 3.823218e-50 | -8.615850e-47 |
| Msa0594310 | Msa1157870 | 0.826755 | 2.279818e-54 | -8.615850e-47 |
| Msa0594310 | Msa1171710 | 0.804795 | 1.819342e-49 | -8.615850e-47 |
| Msa0594310 | Msa1182860 | 0.809997 | 1.434490e-50 | -8.615850e-47 |
| Msa0594310 | Msa1196440 | 0.802272 | 6.070020e-49 | -8.615850e-47 |
| Msa0594310 | Msa1202190 | 0.832135 | 1.123415e-55 | -8.615850e-47 |
| Msa0594310 | Msa1209460 | 0.826797 | 2.226914e-54 | -8.615850e-47 |
| Msa0594310 | Msa1225250 | 0.811720 | 6.077879e-51 | -8.615850e-47 |
| Msa0594310 | Msa1231550 | 0.814691 | 1.354180e-51 | -8.615850e-47 |
| Msa0594310 | Msa1242240 | 0.801106 | 1.052686e-48 | -8.615850e-47 |
| Msa0594310 | Msa1251930 | 0.801433 | 9.025630e-49 | -8.615850e-47 |
| Msa0594310 | Msa1269480 | 0.830559 | 2.743565e-55 | -8.615850e-47 |
| Msa0594310 | Msa1276660 | 0.827402 | 1.595588e-54 | -8.615850e-47 |
| Msa0594310 | Msa1284260 | 0.802745 | 4.847900e-49 | -8.615850e-47 |
| Msa0594310 | Msa1298370 | 0.804394 | 2.206647e-49 | -8.615850e-47 |
| Msa0594310 | Msa1302830 | 0.807599 | 4.671122e-50 | -8.615850e-47 |
| Msa0594310 | Msa1303250 | 0.808998 | 2.351302e-50 | -8.615850e-47 |
| Msa0594310 | Msa1320740 | 0.802456 | 5.562014e-49 | -8.615850e-47 |
| Msa0594310 | Msa1331590 | 0.806375 | 8.480681e-50 | -8.615850e-47 |
| Msa0594310 | Msa1366600 | 0.806722 | 7.165867e-50 | -8.615850e-47 |
| Msa0594310 | Msa1367370 | 0.803298 | 3.727289e-49 | -8.615850e-47 |
| Msa0594310 | Msa1369150 | 0.824808 | 6.604327e-54 | -8.615850e-47 |
| Msa0594310 | Msa1372230 | 0.805706 | 1.172807e-49 | -8.615850e-47 |
| Msa0594310 | Msa1374040 | 0.803067 | 4.160645e-49 | -8.615850e-47 |
| Msa0594310 | Msa1398340 | 0.802519 | 5.397780e-49 | -8.615850e-47 |
| Msa0594310 | Msa1409870 | 0.805649 | 1.205615e-49 | -8.615850e-47 |
| Msa0594310 | Msa1422420 | 0.828144 | 1.058577e-54 | -8.615850e-47 |
| Msa0594310 | Msa1439610 | 0.809593 | 1.752398e-50 | -8.615850e-47 |
| Msa0594310 | Msa1440960 | 0.809458 | 1.873447e-50 | -8.615850e-47 |
| Msa0594310 | Msa1443110 | 0.800396 | 1.469645e-48 | -8.615850e-47 |
| Msa0594310 | Msa1445190 | 0.810303 | 1.232633e-50 | -8.615850e-47 |
| Msa0594310 | Msa1454140 | 0.808218 | 3.450742e-50 | -8.615850e-47 |
| Msa0594310 | Msa1459380 | 0.808127 | 3.608560e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594310 | MtrunA17_Chr4g0013151 | 94.955 | 555 | 27 | 1 | 1 | 555 | 66 | 619 | 0.0 | 979 |
| Msa0594310 | MtrunA17_Chr7g0244501 | 65.000 | 560 | 162 | 12 | 17 | 555 | 24 | 570 | 0.0 | 635 |
| Msa0594310 | MtrunA17_Chr3g0114551 | 37.649 | 587 | 292 | 13 | 20 | 543 | 21 | 596 | 8.09e-82 | 267 |
| Msa0594310 | MtrunA17_Chr5g0438111 | 37.117 | 555 | 285 | 15 | 18 | 548 | 20 | 534 | 7.92e-68 | 228 |
| Msa0594310 | MtrunA17_Chr3g0133891 | 31.143 | 350 | 226 | 4 | 85 | 424 | 512 | 856 | 9.91e-33 | 134 |
| Msa0594310 | MtrunA17_Chr1g0153431 | 32.308 | 325 | 198 | 7 | 108 | 424 | 528 | 838 | 2.40e-26 | 114 |
| Msa0594310 | MtrunA17_Chr8g0369191 | 29.975 | 397 | 214 | 9 | 70 | 434 | 210 | 574 | 5.45e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594310 | AT2G38370.1 | 45.961 | 557 | 229 | 15 | 2 | 541 | 3 | 504 | 1.57e-116 | 355 |
| Msa0594310 | AT2G38370.2 | 45.961 | 557 | 229 | 15 | 2 | 541 | 20 | 521 | 2.22e-116 | 355 |
| Msa0594310 | AT2G40480.1 | 37.975 | 553 | 257 | 17 | 5 | 548 | 40 | 515 | 4.18e-72 | 239 |
| Msa0594310 | AT3G51720.1 | 36.654 | 532 | 180 | 14 | 18 | 541 | 6 | 388 | 5.72e-66 | 220 |
| Msa0594310 | AT3G56270.1 | 34.416 | 462 | 224 | 12 | 15 | 473 | 35 | 420 | 2.05e-42 | 158 |
| Msa0594310 | AT2G26570.1 | 32.831 | 332 | 209 | 5 | 97 | 424 | 408 | 729 | 1.03e-32 | 134 |
| Msa0594310 | AT2G26570.1 | 44.660 | 103 | 45 | 3 | 22 | 121 | 162 | 255 | 6.83e-11 | 65.9 |
| Msa0594310 | AT2G26570.2 | 32.831 | 332 | 209 | 5 | 97 | 424 | 408 | 729 | 1.03e-32 | 134 |
| Msa0594310 | AT2G26570.2 | 44.660 | 103 | 45 | 3 | 22 | 121 | 162 | 255 | 6.83e-11 | 65.9 |
| Msa0594310 | AT4G33390.1 | 35.531 | 273 | 171 | 2 | 165 | 433 | 459 | 730 | 1.94e-26 | 114 |
| Msa0594310 | AT5G42880.1 | 31.203 | 266 | 158 | 4 | 165 | 425 | 423 | 668 | 1.18e-21 | 99.8 |
| Msa0594310 | AT1G45545.1 | 29.572 | 257 | 173 | 4 | 173 | 423 | 424 | 678 | 1.07e-17 | 87.4 |
| Msa0594310 | AT1G45545.2 | 29.167 | 264 | 179 | 4 | 173 | 430 | 425 | 686 | 1.10e-17 | 87.4 |
Find 108 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCGGTTATTTGACATAAA+TGG | 0.131409 | 4_2:-21715303 | Msa0594310:CDS |
| CTAGATTCTTGTTTGTTATT+TGG | 0.134413 | 4_2:-21714858 | Msa0594310:three_prime_UTR |
| GGCAGAACATTTCAAGAAAA+TGG | 0.171368 | 4_2:-21715850 | Msa0594310:CDS |
| TAGATTCTTGTTTGTTATTT+GGG | 0.206714 | 4_2:-21714857 | Msa0594310:three_prime_UTR |
| GGTTCGGTGGTGTTGGTTAT+TGG | 0.246121 | 4_2:-21717792 | Msa0594310:CDS |
| CGAAGCAAATGTATCGAAAA+TGG | 0.273101 | 4_2:-21715529 | Msa0594310:CDS |
| TCTCTGGCATCATCAGTTTC+CGG | 0.279858 | 4_2:+21715211 | None:intergenic |
| TTGAAGAGGCTTTAAGAAAA+TGG | 0.291438 | 4_2:-21715398 | Msa0594310:CDS |
| TCTGCTAAGAGAAAGAAATT+TGG | 0.309514 | 4_2:-21715048 | Msa0594310:CDS |
| TAAACCTGGATTCGCTGAAT+TGG | 0.324008 | 4_2:+21716160 | None:intergenic |
| AGAGCTTGATGCTGGAAAAT+TGG | 0.325183 | 4_2:-21716414 | Msa0594310:CDS |
| TGTTGTGTTGTGAAGTGTTT+AGG | 0.333124 | 4_2:+21717981 | None:intergenic |
| AAGAAGACAAGAAAATAAAA+AGG | 0.352466 | 4_2:+21717951 | None:intergenic |
| AAGAGAAAGAAATTTGGTTT+TGG | 0.353841 | 4_2:-21715042 | Msa0594310:CDS |
| CCTGCAGTTTAAGTCTTGTT+TGG | 0.360526 | 4_2:+21715952 | None:intergenic |
| CGGTTCACCACCACCATATC+AGG | 0.360784 | 4_2:+21717901 | None:intergenic |
| TTCAATGGAAACTCCTGATA+TGG | 0.361446 | 4_2:-21717914 | Msa0594310:exon |
| GAAGGCTCTTGAAGAAGCTT+TGG | 0.361979 | 4_2:-21715457 | Msa0594310:CDS |
| CTCGGTTATTTGACATAAAT+GGG | 0.367655 | 4_2:-21715302 | Msa0594310:CDS |
| AAACCGTTCTCCTTCGAATC+CGG | 0.382540 | 4_2:+21717871 | None:intergenic |
| CTCGGCAAGTGCAGCTGCTT+CGG | 0.385931 | 4_2:+21715704 | None:intergenic |
| TGCCTATCAAATTCAAAAGA+TGG | 0.395264 | 4_2:+21715102 | None:intergenic |
| GGAGGAACAAGCAGTGGAAT+TGG | 0.401433 | 4_2:-21716393 | Msa0594310:CDS |
| CCTTCGAATCCGGTTCAATC+CGG | 0.404834 | 4_2:+21717881 | None:intergenic |
| GTTGAATTTATGTGAAGATA+AGG | 0.409398 | 4_2:-21716237 | Msa0594310:CDS |
| CTGAAGCTCTTTCGTAATAT+CGG | 0.411796 | 4_2:+21715887 | None:intergenic |
| AGTCGGCTTTAGAACTGGTT+TGG | 0.412171 | 4_2:+21715257 | None:intergenic |
| AGCAGCAACTAATCTAAATT+CGG | 0.419679 | 4_2:+21715755 | None:intergenic |
| CAGCGATATCGTTTGTAGTT+CGG | 0.432690 | 4_2:+21716099 | None:intergenic |
| AGAATAAAACGAATTACATA+TGG | 0.437327 | 4_2:+21714722 | None:intergenic |
| AAAGAAGCTGTTACTCGGTT+CGG | 0.446194 | 4_2:-21717808 | Msa0594310:CDS |
| GATAGAGTCGGCTTTAGAAC+TGG | 0.446529 | 4_2:+21715252 | None:intergenic |
| GCAGAACATTTCAAGAAAAT+GGG | 0.446948 | 4_2:-21715849 | Msa0594310:CDS |
| CCTTCCAATTCAGCGAATCC+AGG | 0.448236 | 4_2:-21716164 | Msa0594310:CDS |
| ACGAAAGAATCTCGATGAAA+AGG | 0.462368 | 4_2:-21715167 | Msa0594310:CDS |
| AAGAGCTTATCGTTAAAGAA+AGG | 0.463956 | 4_2:-21716367 | Msa0594310:CDS |
| CATCACCTCAAGTTCAAAGT+TGG | 0.465116 | 4_2:+21714976 | None:intergenic |
| CTGATATGGTGGTGGTGAAC+CGG | 0.466041 | 4_2:-21717900 | Msa0594310:CDS |
| ATCCCACCTTCAAACTTCTC+TGG | 0.472004 | 4_2:+21715195 | None:intergenic |
| GTTACTCGGTTCGGTGGTGT+TGG | 0.473117 | 4_2:-21717799 | Msa0594310:CDS |
| AGAGTAGAGGCTGCAAATAG+AGG | 0.481776 | 4_2:-21715432 | Msa0594310:CDS |
| CTATTATTATGATTAAGAAC+AGG | 0.482857 | 4_2:+21717766 | None:intergenic |
| AGGGAAGTTAGTAGTTGAAG+AGG | 0.491762 | 4_2:-21715412 | Msa0594310:CDS |
| CCGGATTGAACCGGATTCGA+AGG | 0.492095 | 4_2:-21717881 | Msa0594310:CDS |
| ACAATTGTATAACTCTTGTA+AGG | 0.495615 | 4_2:-21714759 | Msa0594310:three_prime_UTR |
| TATTAACCTCATTATTCCTC+AGG | 0.502714 | 4_2:-21717737 | Msa0594310:intron |
| AGTTCCCTTAAAATTAAACC+TGG | 0.508559 | 4_2:+21716146 | None:intergenic |
| AACACAGAAGAGCTTGATGC+TGG | 0.508566 | 4_2:-21716422 | Msa0594310:CDS |
| GATGAAAAGGAAAGTGTCGT+TGG | 0.508711 | 4_2:-21715154 | Msa0594310:CDS |
| GAATATCACTCGAGAAAACC+AGG | 0.513568 | 4_2:-21716028 | Msa0594310:CDS |
| ATTCTGAGTTAAACTCTCCC+TGG | 0.516756 | 4_2:+21716010 | None:intergenic |
| AGAGCTTATCGTTAAAGAAA+GGG | 0.516851 | 4_2:-21716366 | Msa0594310:CDS |
| GTAAAATGAAGGAAGCTGCT+AGG | 0.524760 | 4_2:-21715731 | Msa0594310:CDS |
| TAAAATGAAGGAAGCTGCTA+GGG | 0.527463 | 4_2:-21715730 | Msa0594310:CDS |
| TGCTGAAATTGAATGTGGTT+CGG | 0.527945 | 4_2:-21715919 | Msa0594310:CDS |
| CTGTTAAAGAAGCTGTTACT+CGG | 0.535629 | 4_2:-21717813 | Msa0594310:CDS |
| GGCAAGTGCAGCTGCTTCGG+CGG | 0.535980 | 4_2:+21715707 | None:intergenic |
| GGTGGTGAACCGGATTGAAC+CGG | 0.537392 | 4_2:-21717890 | Msa0594310:CDS |
| ATGAAAAGGAAAGTGTCGTT+GGG | 0.538173 | 4_2:-21715153 | Msa0594310:CDS |
| AGCTTCTTCGATAGTGAGAA+GGG | 0.538244 | 4_2:+21715325 | None:intergenic |
| TTTCTTGAAATGTTCTGCCT+CGG | 0.538325 | 4_2:+21715854 | None:intergenic |
| CGCTGATGTTCGAGTTTCCG+TGG | 0.539445 | 4_2:-21716081 | Msa0594310:CDS |
| GCTTCTTTAACAGACTCAAA+CGG | 0.540992 | 4_2:+21717823 | None:intergenic |
| CGATAGGTCAAATATTGAGC+CGG | 0.541111 | 4_2:-21715230 | Msa0594310:CDS |
| TATTAGCTTAATTCTTGTCA+AGG | 0.543213 | 4_2:-21714694 | Msa0594310:three_prime_UTR |
| AGTTGCTGCTCGTAAAATGA+AGG | 0.543977 | 4_2:-21715742 | Msa0594310:CDS |
| AAGAGTTGGAAAGTACCAAA+AGG | 0.544666 | 4_2:-21716325 | Msa0594310:CDS |
| TTTCTTGTTGAGTGATTCCA+CGG | 0.545510 | 4_2:+21716064 | None:intergenic |
| GCTTGATGCTGGAAAATTGG+AGG | 0.546478 | 4_2:-21716411 | Msa0594310:CDS |
| AGAAGCCAACTTTGAACTTG+AGG | 0.546691 | 4_2:-21714981 | Msa0594310:CDS |
| GGCGATCCGAGGGTAACAAA+AGG | 0.547667 | 4_2:-21715377 | Msa0594310:CDS |
| GAGTAGAGGCTGCAAATAGA+GGG | 0.556599 | 4_2:-21715431 | Msa0594310:CDS |
| AAAGCGTTATCTTATTATGA+CGG | 0.559732 | 4_2:-21715678 | Msa0594310:CDS |
| GTGTCGTTGGGTCAGATGCT+TGG | 0.562470 | 4_2:-21715141 | Msa0594310:CDS |
| TAGAGCATTATACTCTTCAA+AGG | 0.563624 | 4_2:+21715620 | None:intergenic |
| GATGAAGAAAAGGAAAACCA+TGG | 0.563731 | 4_2:-21716197 | Msa0594310:CDS |
| CGAAGTTAAAACAAGCAAGA+AGG | 0.565482 | 4_2:-21715475 | Msa0594310:CDS |
| GAGCTTCTTCGATAGTGAGA+AGG | 0.567321 | 4_2:+21715324 | None:intergenic |
| TAAATACCTGAGGAATAATG+AGG | 0.573109 | 4_2:+21717731 | None:intergenic |
| AGCTCTTTCGTAATATCGGA+AGG | 0.578196 | 4_2:+21715891 | None:intergenic |
| CCTGGATTCGCTGAATTGGA+AGG | 0.579976 | 4_2:+21716164 | None:intergenic |
| AGAAGCTTTGGAAAGAGTAG+AGG | 0.581826 | 4_2:-21715445 | Msa0594310:CDS |
| GAACCGGATTCGAAGGAGAA+CGG | 0.582285 | 4_2:-21717874 | Msa0594310:CDS |
| ATGAAGAAAAGGAAAACCAT+GGG | 0.586803 | 4_2:-21716196 | Msa0594310:CDS |
| GTATTGTGATTGAATTTGCT+AGG | 0.594210 | 4_2:-21714881 | Msa0594310:three_prime_UTR |
| CTCACTATCGAAGAAGCTCT+CGG | 0.599628 | 4_2:-21715320 | Msa0594310:CDS |
| ATGCCAGAGAAGTTTGAAGG+TGG | 0.600167 | 4_2:-21715198 | Msa0594310:CDS |
| TGGAAGGAACACGACTCCCA+TGG | 0.603144 | 4_2:+21716180 | None:intergenic |
| ATTTGACCTATCGATAGAGT+CGG | 0.604595 | 4_2:+21715240 | None:intergenic |
| GACTGTGTGCAAAACTGTGA+TGG | 0.605971 | 4_2:-21715654 | Msa0594310:CDS |
| CTAAAGCCGACTCTATCGAT+AGG | 0.608619 | 4_2:-21715246 | Msa0594310:CDS |
| AAAATTGGAGGAACAAGCAG+TGG | 0.610904 | 4_2:-21716399 | Msa0594310:CDS |
| AAGTGAAAGTGAAAGTGTAA+CGG | 0.616017 | 4_2:+21718012 | None:intergenic |
| TTTAAGAAAATGGCGATCCG+AGG | 0.618775 | 4_2:-21715388 | Msa0594310:CDS |
| ATGATGCCAGAGAAGTTTGA+AGG | 0.619171 | 4_2:-21715201 | Msa0594310:CDS |
| CCAAACAAGACTTAAACTGC+AGG | 0.619705 | 4_2:-21715952 | Msa0594310:CDS |
| GAAGCTGTTACTCGGTTCGG+TGG | 0.622084 | 4_2:-21717805 | Msa0594310:CDS |
| TTAAGAAAATGGCGATCCGA+GGG | 0.633233 | 4_2:-21715387 | Msa0594310:CDS |
| TCTAACATGCAAAGCTCGAG+AGG | 0.633623 | 4_2:-21715601 | Msa0594310:CDS |
| GCTTCAGCGATTGAGTTCCG+AGG | 0.640723 | 4_2:-21715871 | Msa0594310:CDS |
| AACAAGACTTAAACTGCAGG+TGG | 0.640787 | 4_2:-21715949 | Msa0594310:CDS |
| GGAAACTCCTGATATGGTGG+TGG | 0.647078 | 4_2:-21717908 | Msa0594310:CDS |
| AAAGATGCTGAAATTGAATG+TGG | 0.651183 | 4_2:-21715924 | Msa0594310:CDS |
| ACTCAACAAGAAACTTCAGA+AGG | 0.651200 | 4_2:-21716054 | Msa0594310:CDS |
| GAAGGAGAACGGTTTAAGAG+CGG | 0.672078 | 4_2:-21717863 | Msa0594310:CDS |
| AATGGAAACTCCTGATATGG+TGG | 0.681888 | 4_2:-21717911 | Msa0594310:CDS |
| AATATCACTCGAGAAAACCA+GGG | 0.694657 | 4_2:-21716027 | Msa0594310:CDS |
| TGCCAGAGAAGTTTGAAGGT+GGG | 0.696821 | 4_2:-21715197 | Msa0594310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAATTTTTTTTTTAT+TGG | - | chr4_2:21715068-21715087 | Msa0594310:CDS | 0.0% |
| !!! | TATTTTTGTATTTTCTAATT+AGG | - | chr4_2:21715118-21715137 | Msa0594310:CDS | 10.0% |
| !!! | ATTTTTGTATTTTCTAATTA+GGG | - | chr4_2:21715119-21715138 | Msa0594310:CDS | 10.0% |
| !! | CATATGAAAAATAATATATT+TGG | - | chr4_2:21715304-21715323 | Msa0594310:CDS | 10.0% |
| !! | GAAAAATAATATATTTGGAT+AGG | - | chr4_2:21715309-21715328 | Msa0594310:CDS | 15.0% |
| !! | ATACATTCATTGAAAAAATA+GGG | + | chr4_2:21715981-21716000 | None:intergenic | 15.0% |
| !!! | ATGAACATAGTTTTAAATTA+CGG | + | chr4_2:21716101-21716120 | None:intergenic | 15.0% |
| !!! | TAATTTAAAACTATGTTCAT+AGG | - | chr4_2:21716101-21716120 | Msa0594310:CDS | 15.0% |
| !!! | AAAACCTTATGTTTTTTTTT+TGG | - | chr4_2:21716128-21716147 | Msa0594310:CDS | 15.0% |
| !! | AAATCCAAAAAAAAAACATA+AGG | + | chr4_2:21716135-21716154 | None:intergenic | 15.0% |
| !! | AAGAAGACAAGAAAATAAAA+AGG | + | chr4_2:21714744-21714763 | None:intergenic | 20.0% |
| !! | CTATTATTATGATTAAGAAC+AGG | + | chr4_2:21714929-21714948 | None:intergenic | 20.0% |
| !! | AACATAAAAATAAATACCTG+AGG | + | chr4_2:21714974-21714993 | None:intergenic | 20.0% |
| !! | AATAACAAAAATGCAAACTT+TGG | + | chr4_2:21715049-21715068 | None:intergenic | 20.0% |
| !!! | TTTTTTTATTGGTAGTTGTT+TGG | - | chr4_2:21715079-21715098 | Msa0594310:CDS | 20.0% |
| !!! | TTTTTTATTGGTAGTTGTTT+GGG | - | chr4_2:21715080-21715099 | Msa0594310:CDS | 20.0% |
| !!! | AGAATTGATTTTATGATGTT+TGG | - | chr4_2:21715394-21715413 | Msa0594310:CDS | 20.0% |
| !! | CATACATTCATTGAAAAAAT+AGG | + | chr4_2:21715982-21716001 | None:intergenic | 20.0% |
| !!! | GAAAATGGATGTTTTAAAAA+GGG | - | chr4_2:21717178-21717197 | Msa0594310:intron | 20.0% |
| !!! | TAGATTCTTGTTTGTTATTT+GGG | - | chr4_2:21717835-21717854 | Msa0594310:CDS | 20.0% |
| !! | AGAATAAAACGAATTACATA+TGG | + | chr4_2:21717973-21717992 | None:intergenic | 20.0% |
| !!! | TTTTTTCACTACTCTTTCAA+TGG | - | chr4_2:21714763-21714782 | Msa0594310:three_prime_UTR | 25.0% |
| ! | TTGGATCTGGATATATATAT+AGG | - | chr4_2:21715146-21715165 | Msa0594310:CDS | 25.0% |
| !! | TGTTTGATTTCAATTCTAGA+GGG | - | chr4_2:21715347-21715366 | Msa0594310:CDS | 25.0% |
| ! | TATGATGTTTGGATGATTTA+AGG | - | chr4_2:21715405-21715424 | Msa0594310:CDS | 25.0% |
| ! | TGGATTTAGCAATGAAATTA+AGG | + | chr4_2:21715478-21715497 | None:intergenic | 25.0% |
| ! | AGATAAAAGTGAGTTATGTT+TGG | + | chr4_2:21715518-21715537 | None:intergenic | 25.0% |
| ! | TTCAACCTAGAAATCAAAAT+CGG | - | chr4_2:21715710-21715729 | Msa0594310:CDS | 25.0% |
| ! | TATGAATTATGAATGCTCTT+TGG | - | chr4_2:21715795-21715814 | Msa0594310:CDS | 25.0% |
| !! | TTTTACCATGATTATTACAG+TGG | - | chr4_2:21715953-21715972 | Msa0594310:CDS | 25.0% |
| ! | CAACAATATAAACATCTTAG+AGG | + | chr4_2:21716074-21716093 | None:intergenic | 25.0% |
| !! | TTTTGGATTTCATACGTTTT+TGG | - | chr4_2:21716145-21716164 | Msa0594310:CDS | 25.0% |
| !! | TTTGGATTTCATACGTTTTT+GGG | - | chr4_2:21716146-21716165 | Msa0594310:CDS | 25.0% |
| ! | GTTGAATTTATGTGAAGATA+AGG | - | chr4_2:21716455-21716474 | Msa0594310:intron | 25.0% |
| ! | GAAAAAAGAAGATGAAGAAA+AGG | - | chr4_2:21716485-21716504 | Msa0594310:intron | 25.0% |
| !!! | GAATCCAGGTTTAATTTTAA+GGG | - | chr4_2:21716542-21716561 | Msa0594310:intron | 25.0% |
| ! | TTCAAAAATAACTTCACTAG+AGG | - | chr4_2:21716707-21716726 | Msa0594310:intron | 25.0% |
| !! | ATAAGATAACGCTTTTATCT+CGG | + | chr4_2:21717009-21717028 | None:intergenic | 25.0% |
| !! | AAAGCGTTATCTTATTATGA+CGG | - | chr4_2:21717014-21717033 | Msa0594310:intron | 25.0% |
| !!! | CGAAAATGGATGTTTTAAAA+AGG | - | chr4_2:21717177-21717196 | Msa0594310:intron | 25.0% |
| !! | ATCCATCTTTTGAATTTGAT+AGG | - | chr4_2:21717588-21717607 | Msa0594310:intron | 25.0% |
| !!! | AAGAGAAAGAAATTTGGTTT+TGG | - | chr4_2:21717650-21717669 | Msa0594310:intron | 25.0% |
| ! | CTGATAAGATTACAAAAATG+AGG | - | chr4_2:21717779-21717798 | Msa0594310:CDS | 25.0% |
| ! | TACAAAAATGAGGATCTAAA+TGG | - | chr4_2:21717789-21717808 | Msa0594310:CDS | 25.0% |
| !!! | CTAGATTCTTGTTTGTTATT+TGG | - | chr4_2:21717834-21717853 | Msa0594310:CDS | 25.0% |
| ! | ACAATTGTATAACTCTTGTA+AGG | - | chr4_2:21717933-21717952 | Msa0594310:five_prime_UTR | 25.0% |
| !! | TATTAGCTTAATTCTTGTCA+AGG | - | chr4_2:21717998-21718017 | Msa0594310:five_prime_UTR | 25.0% |
| ! | AAGTGAAAGTGAAAGTGTAA+CGG | + | chr4_2:21714683-21714702 | None:intergenic | 30.0% |
| TATTAACCTCATTATTCCTC+AGG | - | chr4_2:21714955-21714974 | Msa0594310:three_prime_UTR | 30.0% | |
| TAAATACCTGAGGAATAATG+AGG | + | chr4_2:21714964-21714983 | None:intergenic | 30.0% | |
| ! | ATTTTCTAATTAGGGAGACT+TGG | - | chr4_2:21715127-21715146 | Msa0594310:CDS | 30.0% |
| ! | GTGTTTGATTTCAATTCTAG+AGG | - | chr4_2:21715346-21715365 | Msa0594310:CDS | 30.0% |
| GTATTGAAGCTACAATTTGT+AGG | - | chr4_2:21715427-21715446 | Msa0594310:CDS | 30.0% | |
| ! | AAGCTACAATTTGTAGGTTT+TGG | - | chr4_2:21715433-21715452 | Msa0594310:CDS | 30.0% |
| TGGATGCATTTATGTAAAAG+TGG | + | chr4_2:21715498-21715517 | None:intergenic | 30.0% | |
| TCAACCTAGAAATCAAAATC+GGG | - | chr4_2:21715711-21715730 | Msa0594310:CDS | 30.0% | |
| CTTCCAAATCATTTGTCATT+AGG | - | chr4_2:21715736-21715755 | Msa0594310:CDS | 30.0% | |
| AAATTGCAGTCAAAATGTGA+TGG | - | chr4_2:21716019-21716038 | Msa0594310:CDS | 30.0% | |
| AATTGCAGTCAAAATGTGAT+GGG | - | chr4_2:21716020-21716039 | Msa0594310:CDS | 30.0% | |
| ! | TTTTCACAAAACCAAAACTG+CGG | + | chr4_2:21716051-21716070 | None:intergenic | 30.0% |
| ! | TTGGATTTCATACGTTTTTG+GGG | - | chr4_2:21716147-21716166 | Msa0594310:CDS | 30.0% |
| !!! | TTTTGGGGGTATTTTCTTTT+TGG | - | chr4_2:21716162-21716181 | Msa0594310:CDS | 30.0% |
| AAGAGCTTATCGTTAAAGAA+AGG | - | chr4_2:21716325-21716344 | Msa0594310:CDS | 30.0% | |
| AGAGCTTATCGTTAAAGAAA+GGG | - | chr4_2:21716326-21716345 | Msa0594310:CDS | 30.0% | |
| !!! | TCTCGATGTTTTAAAAGAGT+TGG | - | chr4_2:21716353-21716372 | Msa0594310:CDS | 30.0% |
| ATGAAGAAAAGGAAAACCAT+GGG | - | chr4_2:21716496-21716515 | Msa0594310:intron | 30.0% | |
| !! | CGAATCCAGGTTTAATTTTA+AGG | - | chr4_2:21716541-21716560 | Msa0594310:intron | 30.0% |
| AGTTCCCTTAAAATTAAACC+TGG | + | chr4_2:21716549-21716568 | None:intergenic | 30.0% | |
| AAAGATGCTGAAATTGAATG+TGG | - | chr4_2:21716768-21716787 | Msa0594310:intron | 30.0% | |
| GCAGAACATTTCAAGAAAAT+GGG | - | chr4_2:21716843-21716862 | Msa0594310:intron | 30.0% | |
| AGCAGCAACTAATCTAAATT+CGG | + | chr4_2:21716940-21716959 | None:intergenic | 30.0% | |
| ! | TAGAGCATTATACTCTTCAA+AGG | + | chr4_2:21717075-21717094 | None:intergenic | 30.0% |
| !! | TTGAAGAGGCTTTAAGAAAA+TGG | - | chr4_2:21717294-21717313 | Msa0594310:intron | 30.0% |
| TCTCGGTTATTTGACATAAA+TGG | - | chr4_2:21717389-21717408 | Msa0594310:intron | 30.0% | |
| CTCGGTTATTTGACATAAAT+GGG | - | chr4_2:21717390-21717409 | Msa0594310:intron | 30.0% | |
| TGCCTATCAAATTCAAAAGA+TGG | + | chr4_2:21717593-21717612 | None:intergenic | 30.0% | |
| TCTGCTAAGAGAAAGAAATT+TGG | - | chr4_2:21717644-21717663 | Msa0594310:intron | 30.0% | |
| ! | GTATTGTGATTGAATTTGCT+AGG | - | chr4_2:21717811-21717830 | Msa0594310:CDS | 30.0% |
| ! | TTGCTGTACTATTTTGTAGA+GGG | - | chr4_2:21717899-21717918 | Msa0594310:CDS | 30.0% |
| ! | TGTTGTGTTGTGAAGTGTTT+AGG | + | chr4_2:21714714-21714733 | None:intergenic | 35.0% |
| TTCAATGGAAACTCCTGATA+TGG | - | chr4_2:21714778-21714797 | Msa0594310:three_prime_UTR | 35.0% | |
| GCTTCTTTAACAGACTCAAA+CGG | + | chr4_2:21714872-21714891 | None:intergenic | 35.0% | |
| CTGTTAAAGAAGCTGTTACT+CGG | - | chr4_2:21714879-21714898 | Msa0594310:three_prime_UTR | 35.0% | |
| !!! | CAACCTCTAGAATCACTTTT+TGG | + | chr4_2:21715373-21715392 | None:intergenic | 35.0% |
| ! | GGTTCAGCTTTTACAAGAAT+TGG | + | chr4_2:21715574-21715593 | None:intergenic | 35.0% |
| GGAAGTAGATTCTGGTAATT+TGG | - | chr4_2:21715658-21715677 | Msa0594310:CDS | 35.0% | |
| ! | GATTCTGGTAATTTGGAGTT+TGG | - | chr4_2:21715665-21715684 | Msa0594310:CDS | 35.0% |
| ! | TTTCTAGGTTGAACAACTCT+TGG | + | chr4_2:21715703-21715722 | None:intergenic | 35.0% |
| !!! | AGAACCCGATTTTGATTTCT+AGG | + | chr4_2:21715718-21715737 | None:intergenic | 35.0% |
| CCACCTAATGACAAATGATT+TGG | + | chr4_2:21715742-21715761 | None:intergenic | 35.0% | |
| CCAAATCATTTGTCATTAGG+TGG | - | chr4_2:21715739-21715758 | Msa0594310:CDS | 35.0% | |
| ! | ACATCAAAGGAGTTCTAACT+AGG | + | chr4_2:21715825-21715844 | None:intergenic | 35.0% |
| TTGACTGCAATTTCGAATCA+CGG | + | chr4_2:21716012-21716031 | None:intergenic | 35.0% | |
| !! | TGGATTTCATACGTTTTTGG+GGG | - | chr4_2:21716148-21716167 | Msa0594310:CDS | 35.0% |
| !! | AAGAGTTGGAAAGTACCAAA+AGG | - | chr4_2:21716367-21716386 | Msa0594310:CDS | 35.0% |
| ! | CAGATTTTCAACAAGCCTTT+TGG | + | chr4_2:21716385-21716404 | None:intergenic | 35.0% |
| GATGAAGAAAAGGAAAACCA+TGG | - | chr4_2:21716495-21716514 | Msa0594310:intron | 35.0% | |
| TTTCTTGTTGAGTGATTCCA+CGG | + | chr4_2:21716631-21716650 | None:intergenic | 35.0% | |
| ACTCAACAAGAAACTTCAGA+AGG | - | chr4_2:21716638-21716657 | Msa0594310:intron | 35.0% | |
| AATATCACTCGAGAAAACCA+GGG | - | chr4_2:21716665-21716684 | Msa0594310:intron | 35.0% | |
| TGCTGAAATTGAATGTGGTT+CGG | - | chr4_2:21716773-21716792 | Msa0594310:intron | 35.0% | |
| CTGAAGCTCTTTCGTAATAT+CGG | + | chr4_2:21716808-21716827 | None:intergenic | 35.0% | |
| TTTCTTGAAATGTTCTGCCT+CGG | + | chr4_2:21716841-21716860 | None:intergenic | 35.0% | |
| GGCAGAACATTTCAAGAAAA+TGG | - | chr4_2:21716842-21716861 | Msa0594310:intron | 35.0% | |
| TAAAATGAAGGAAGCTGCTA+GGG | - | chr4_2:21716962-21716981 | Msa0594310:intron | 35.0% | |
| CGAAGCAAATGTATCGAAAA+TGG | - | chr4_2:21717163-21717182 | Msa0594310:intron | 35.0% | |
| !!! | GGATGTTTTAAAAAGGGTTG+AGG | - | chr4_2:21717184-21717203 | Msa0594310:intron | 35.0% |
| CGAAGTTAAAACAAGCAAGA+AGG | - | chr4_2:21717217-21717236 | Msa0594310:intron | 35.0% | |
| ATTTGACCTATCGATAGAGT+CGG | + | chr4_2:21717455-21717474 | None:intergenic | 35.0% | |
| ACGAAAGAATCTCGATGAAA+AGG | - | chr4_2:21717525-21717544 | Msa0594310:intron | 35.0% | |
| !! | ATGAAAAGGAAAGTGTCGTT+GGG | - | chr4_2:21717539-21717558 | Msa0594310:intron | 35.0% |
| !! | CTTGCTGTACTATTTTGTAG+AGG | - | chr4_2:21717898-21717917 | Msa0594310:CDS | 35.0% |
| AATGGAAACTCCTGATATGG+TGG | - | chr4_2:21714781-21714800 | Msa0594310:three_prime_UTR | 40.0% | |
| AAAGAAGCTGTTACTCGGTT+CGG | - | chr4_2:21714884-21714903 | Msa0594310:three_prime_UTR | 40.0% | |
| TAATTAGGGAGACTTGGATC+TGG | - | chr4_2:21715133-21715152 | Msa0594310:CDS | 40.0% | |
| AAGCTGAACCAAACATACAC+TGG | - | chr4_2:21715584-21715603 | Msa0594310:CDS | 40.0% | |
| CAAACATACACTGGTGGTTT+CGG | - | chr4_2:21715593-21715612 | Msa0594310:CDS | 40.0% | |
| TCTTCTAACTAAGACACGAG+CGG | + | chr4_2:21715775-21715794 | None:intergenic | 40.0% | |
| ! | TCAAAGGAGTTCTAACTAGG+AGG | + | chr4_2:21715822-21715841 | None:intergenic | 40.0% |
| ACCAACCAAGTTGTCAGTTT+GGG | - | chr4_2:21715855-21715874 | Msa0594310:CDS | 40.0% | |
| TTCATCCCAAACTGACAACT+TGG | + | chr4_2:21715863-21715882 | None:intergenic | 40.0% | |
| AGAGCTTGATGCTGGAAAAT+TGG | - | chr4_2:21716278-21716297 | Msa0594310:CDS | 40.0% | |
| AAAATTGGAGGAACAAGCAG+TGG | - | chr4_2:21716293-21716312 | Msa0594310:CDS | 40.0% | |
| TAAACCTGGATTCGCTGAAT+TGG | + | chr4_2:21716535-21716554 | None:intergenic | 40.0% | |
| CAGCGATATCGTTTGTAGTT+CGG | + | chr4_2:21716596-21716615 | None:intergenic | 40.0% | |
| GAATATCACTCGAGAAAACC+AGG | - | chr4_2:21716664-21716683 | Msa0594310:intron | 40.0% | |
| ATTCTGAGTTAAACTCTCCC+TGG | + | chr4_2:21716685-21716704 | None:intergenic | 40.0% | |
| !! | CCTGCAGTTTAAGTCTTGTT+TGG | + | chr4_2:21716743-21716762 | None:intergenic | 40.0% |
| CCAAACAAGACTTAAACTGC+AGG | - | chr4_2:21716740-21716759 | Msa0594310:intron | 40.0% | |
| AACAAGACTTAAACTGCAGG+TGG | - | chr4_2:21716743-21716762 | Msa0594310:intron | 40.0% | |
| AGCTCTTTCGTAATATCGGA+AGG | + | chr4_2:21716804-21716823 | None:intergenic | 40.0% | |
| AGTTGCTGCTCGTAAAATGA+AGG | - | chr4_2:21716950-21716969 | Msa0594310:intron | 40.0% | |
| GTAAAATGAAGGAAGCTGCT+AGG | - | chr4_2:21716961-21716980 | Msa0594310:intron | 40.0% | |
| !! | AGAAGCTTTGGAAAGAGTAG+AGG | - | chr4_2:21717247-21717266 | Msa0594310:intron | 40.0% |
| AGGGAAGTTAGTAGTTGAAG+AGG | - | chr4_2:21717280-21717299 | Msa0594310:intron | 40.0% | |
| TTTAAGAAAATGGCGATCCG+AGG | - | chr4_2:21717304-21717323 | Msa0594310:intron | 40.0% | |
| TTAAGAAAATGGCGATCCGA+GGG | - | chr4_2:21717305-21717324 | Msa0594310:intron | 40.0% | |
| AGCTTCTTCGATAGTGAGAA+GGG | + | chr4_2:21717370-21717389 | None:intergenic | 40.0% | |
| CGATAGGTCAAATATTGAGC+CGG | - | chr4_2:21717462-21717481 | Msa0594310:intron | 40.0% | |
| ATGATGCCAGAGAAGTTTGA+AGG | - | chr4_2:21717491-21717510 | Msa0594310:intron | 40.0% | |
| !! | GATGAAAAGGAAAGTGTCGT+TGG | - | chr4_2:21717538-21717557 | Msa0594310:intron | 40.0% |
| AGAAGCCAACTTTGAACTTG+AGG | - | chr4_2:21717711-21717730 | Msa0594310:intron | 40.0% | |
| CATCACCTCAAGTTCAAAGT+TGG | + | chr4_2:21717719-21717738 | None:intergenic | 40.0% | |
| AAACCGTTCTCCTTCGAATC+CGG | + | chr4_2:21714824-21714843 | None:intergenic | 45.0% | |
| GAAGGAGAACGGTTTAAGAG+CGG | - | chr4_2:21714829-21714848 | Msa0594310:three_prime_UTR | 45.0% | |
| GGGCCAAAAAGTGATTCTAG+AGG | - | chr4_2:21715367-21715386 | Msa0594310:CDS | 45.0% | |
| CTGAACCAAACATACACTGG+TGG | - | chr4_2:21715587-21715606 | Msa0594310:CDS | 45.0% | |
| CGAAACCACCAGTGTATGTT+TGG | + | chr4_2:21715595-21715614 | None:intergenic | 45.0% | |
| ! | TGCTTACCCTCTAGTTCCTA+GGG | - | chr4_2:21715636-21715655 | Msa0594310:CDS | 45.0% |
| TACTTCCCCTAGGAACTAGA+GGG | + | chr4_2:21715645-21715664 | None:intergenic | 45.0% | |
| TTCCTAGGGGAAGTAGATTC+TGG | - | chr4_2:21715650-21715669 | Msa0594310:CDS | 45.0% | |
| TACCAGAATCTACTTCCCCT+AGG | + | chr4_2:21715655-21715674 | None:intergenic | 45.0% | |
| ! | CTGGTAATTTGGAGTTTGGC+CGG | - | chr4_2:21715669-21715688 | Msa0594310:CDS | 45.0% |
| CACCAACCAAGTTGTCAGTT+TGG | - | chr4_2:21715854-21715873 | Msa0594310:CDS | 45.0% | |
| TCCCAAACTGACAACTTGGT+TGG | + | chr4_2:21715859-21715878 | None:intergenic | 45.0% | |
| GGGAGCCACTGTAATAATCA+TGG | + | chr4_2:21715961-21715980 | None:intergenic | 45.0% | |
| CACAAAACCAAAACTGCGGT+TGG | + | chr4_2:21716047-21716066 | None:intergenic | 45.0% | |
| AACACAGAAGAGCTTGATGC+TGG | - | chr4_2:21716270-21716289 | Msa0594310:CDS | 45.0% | |
| GCTTGATGCTGGAAAATTGG+AGG | - | chr4_2:21716281-21716300 | Msa0594310:CDS | 45.0% | |
| GACTGTGTGCAAAACTGTGA+TGG | - | chr4_2:21717038-21717057 | Msa0594310:intron | 45.0% | |
| TCTAACATGCAAAGCTCGAG+AGG | - | chr4_2:21717091-21717110 | Msa0594310:intron | 45.0% | |
| GAAGGCTCTTGAAGAAGCTT+TGG | - | chr4_2:21717235-21717254 | Msa0594310:intron | 45.0% | |
| AGAGTAGAGGCTGCAAATAG+AGG | - | chr4_2:21717260-21717279 | Msa0594310:intron | 45.0% | |
| GAGTAGAGGCTGCAAATAGA+GGG | - | chr4_2:21717261-21717280 | Msa0594310:intron | 45.0% | |
| ! | TGATCGCCTTTTGTTACCCT+CGG | + | chr4_2:21717324-21717343 | None:intergenic | 45.0% |
| GAGCTTCTTCGATAGTGAGA+AGG | + | chr4_2:21717371-21717390 | None:intergenic | 45.0% | |
| CTCACTATCGAAGAAGCTCT+CGG | - | chr4_2:21717372-21717391 | Msa0594310:intron | 45.0% | |
| !! | AGTCGGCTTTAGAACTGGTT+TGG | + | chr4_2:21717438-21717457 | None:intergenic | 45.0% |
| !! | GATAGAGTCGGCTTTAGAAC+TGG | + | chr4_2:21717443-21717462 | None:intergenic | 45.0% |
| ! | CTAAAGCCGACTCTATCGAT+AGG | - | chr4_2:21717446-21717465 | Msa0594310:intron | 45.0% |
| TCTCTGGCATCATCAGTTTC+CGG | + | chr4_2:21717484-21717503 | None:intergenic | 45.0% | |
| ATGCCAGAGAAGTTTGAAGG+TGG | - | chr4_2:21717494-21717513 | Msa0594310:intron | 45.0% | |
| TGCCAGAGAAGTTTGAAGGT+GGG | - | chr4_2:21717495-21717514 | Msa0594310:intron | 45.0% | |
| ATCCCACCTTCAAACTTCTC+TGG | + | chr4_2:21717500-21717519 | None:intergenic | 45.0% | |
| GGAAACTCCTGATATGGTGG+TGG | - | chr4_2:21714784-21714803 | Msa0594310:three_prime_UTR | 50.0% | |
| !! | CTGATATGGTGGTGGTGAAC+CGG | - | chr4_2:21714792-21714811 | Msa0594310:three_prime_UTR | 50.0% |
| CCTTCGAATCCGGTTCAATC+CGG | + | chr4_2:21714814-21714833 | None:intergenic | 50.0% | |
| GAACCGGATTCGAAGGAGAA+CGG | - | chr4_2:21714818-21714837 | Msa0594310:three_prime_UTR | 50.0% | |
| !! | GGTTCGGTGGTGTTGGTTAT+TGG | - | chr4_2:21714900-21714919 | Msa0594310:three_prime_UTR | 50.0% |
| ! | GTGCTTACCCTCTAGTTCCT+AGG | - | chr4_2:21715635-21715654 | Msa0594310:CDS | 50.0% |
| ! | GCTTACCCTCTAGTTCCTAG+GGG | - | chr4_2:21715637-21715656 | Msa0594310:CDS | 50.0% |
| CTACTTCCCCTAGGAACTAG+AGG | + | chr4_2:21715646-21715665 | None:intergenic | 50.0% | |
| ACAACTCTTGGCCAGACTTC+CGG | + | chr4_2:21715691-21715710 | None:intergenic | 50.0% | |
| GGTGAGCTGAGGAACATCAA+AGG | + | chr4_2:21715838-21715857 | None:intergenic | 50.0% | |
| !! | ACAACTTGGTTGGTGAGCTG+AGG | + | chr4_2:21715849-21715868 | None:intergenic | 50.0% |
| GGAGGAACAAGCAGTGGAAT+TGG | - | chr4_2:21716299-21716318 | Msa0594310:CDS | 50.0% | |
| CCTGGATTCGCTGAATTGGA+AGG | + | chr4_2:21716531-21716550 | None:intergenic | 50.0% | |
| CCTTCCAATTCAGCGAATCC+AGG | - | chr4_2:21716528-21716547 | Msa0594310:intron | 50.0% | |
| CGGTTCACCACCACCATATC+AGG | + | chr4_2:21714794-21714813 | None:intergenic | 55.0% | |
| GGTGGTGAACCGGATTGAAC+CGG | - | chr4_2:21714802-21714821 | Msa0594310:three_prime_UTR | 55.0% | |
| CCGGATTGAACCGGATTCGA+AGG | - | chr4_2:21714811-21714830 | Msa0594310:three_prime_UTR | 55.0% | |
| !! | GAAGCTGTTACTCGGTTCGG+TGG | - | chr4_2:21714887-21714906 | Msa0594310:three_prime_UTR | 55.0% |
| !! | GTTACTCGGTTCGGTGGTGT+TGG | - | chr4_2:21714893-21714912 | Msa0594310:three_prime_UTR | 55.0% |
| TTGGAGTTTGGCCGGAAGTC+TGG | - | chr4_2:21715677-21715696 | Msa0594310:CDS | 55.0% | |
| ! | GATGGGTCCAACCGCAGTTT+TGG | - | chr4_2:21716037-21716056 | Msa0594310:CDS | 55.0% |
| TGGAAGGAACACGACTCCCA+TGG | + | chr4_2:21716515-21716534 | None:intergenic | 55.0% | |
| ! | CGCTGATGTTCGAGTTTCCG+TGG | - | chr4_2:21716611-21716630 | Msa0594310:intron | 55.0% |
| GCTTCAGCGATTGAGTTCCG+AGG | - | chr4_2:21716821-21716840 | Msa0594310:intron | 55.0% | |
| GGCGATCCGAGGGTAACAAA+AGG | - | chr4_2:21717315-21717334 | Msa0594310:intron | 55.0% | |
| ! | GTGTCGTTGGGTCAGATGCT+TGG | - | chr4_2:21717551-21717570 | Msa0594310:intron | 55.0% |
| CTCGGCAAGTGCAGCTGCTT+CGG | + | chr4_2:21716991-21717010 | None:intergenic | 60.0% | |
| GGCAAGTGCAGCTGCTTCGG+CGG | + | chr4_2:21716988-21717007 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 21714675 | 21718039 | 21714675 | ID=Msa0594310;Name=Msa0594310 |
| chr4_2 | mRNA | 21714675 | 21718039 | 21714675 | ID=Msa0594310-mRNA-1;Parent=Msa0594310;Name=Msa0594310-mRNA-1;_AED=0.06;_eAED=0.06;_QI=107|1|1|1|1|1|2|303|555 |
| chr4_2 | exon | 21714675 | 21716450 | 21714675 | ID=Msa0594310-mRNA-1:exon:6004;Parent=Msa0594310-mRNA-1 |
| chr4_2 | exon | 21717738 | 21718039 | 21717738 | ID=Msa0594310-mRNA-1:exon:6003;Parent=Msa0594310-mRNA-1 |
| chr4_2 | five_prime_UTR | 21717933 | 21718039 | 21717933 | ID=Msa0594310-mRNA-1:five_prime_utr;Parent=Msa0594310-mRNA-1 |
| chr4_2 | CDS | 21717738 | 21717932 | 21717738 | ID=Msa0594310-mRNA-1:cds;Parent=Msa0594310-mRNA-1 |
| chr4_2 | CDS | 21714978 | 21716450 | 21714978 | ID=Msa0594310-mRNA-1:cds;Parent=Msa0594310-mRNA-1 |
| chr4_2 | three_prime_UTR | 21714675 | 21714977 | 21714675 | ID=Msa0594310-mRNA-1:three_prime_utr;Parent=Msa0594310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
