AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1161680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161680 MtrunA17_Chr7g0254901 95.252 337 16 0 1 337 1 337 0.0 607
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161680 AT3G56810.1 28.340 247 133 5 133 337 88 332 1.61e-15 76.6

Find 92 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAGATTGTTAGAGAATT+AGG 0.198743 7_4:+51852106 Msa1161680:CDS
GAAGCAGAGTCTTCTCTTAC+AGG 0.271350 7_4:-51852155 None:intergenic
TGGCGACCGGAGTGACAATT+TGG 0.295248 7_4:-51848534 None:intergenic
TAGACAAATACACAAGTATA+AGG 0.307460 7_4:-51852248 None:intergenic
TCTCTTATGAAAGTGAGTTT+TGG 0.316516 7_4:-51847782 None:intergenic
AATAGAGAGCTTGGAAGAAT+AGG 0.342378 7_4:+51852046 Msa1161680:CDS
AAGAATAGGATTAGCTTTGC+AGG 0.354347 7_4:+51852060 Msa1161680:CDS
CTGTTGATTTCTTCCTCTCC+TGG 0.358296 7_4:-51851884 None:intergenic
GACGTCGACGGAACGAGTTC+AGG 0.389376 7_4:-51848396 None:intergenic
AAGACAATTGGCTGCATGTC+CGG 0.397778 7_4:+51847881 Msa1161680:CDS
CACCGCCGTTTCCTTACCTT+CGG 0.406699 7_4:+51847941 Msa1161680:CDS
CAAATTACATTGGATTTAGC+TGG 0.408644 7_4:+51852272 Msa1161680:three_prime_UTR
AAGGAAACGGCGGTGGCGAC+GGG 0.421061 7_4:-51847933 None:intergenic
AAAATTCACGTCAAGACAAT+TGG 0.426627 7_4:+51847869 Msa1161680:CDS
TCCGAGGAGTCCGACTTTAC+CGG 0.432538 7_4:+51848170 Msa1161680:CDS
TCCGTCGACGTCGCCGGCGG+TGG 0.446605 7_4:+51848407 Msa1161680:CDS
CGGTGTCGCCGTCGTCTTCA+CGG 0.447900 7_4:+51847828 Msa1161680:CDS
ATATTCTCCGATGACTTCCT+TGG 0.450568 7_4:-51848213 None:intergenic
AGTGTGTAGGGATGTTGCTT+GGG 0.459394 7_4:+51852018 Msa1161680:CDS
CAAATTAGCGGTGGCGGTGA+CGG 0.471037 7_4:-51848070 None:intergenic
TAAGGAAACGGCGGTGGCGA+CGG 0.473448 7_4:-51847934 None:intergenic
CTTTGCAGGATTGTATATGC+AGG 0.473468 7_4:+51852074 Msa1161680:CDS
AAGTGTAGATGAAGTGTGTA+GGG 0.475361 7_4:+51852006 Msa1161680:CDS
AACGAAACGAACCGAAGGTA+AGG 0.480610 7_4:-51847952 None:intergenic
CTCTGCTTCTGAACTATACA+TGG 0.482592 7_4:+51852169 Msa1161680:exon
ACACAGGACTCGGCTGTTGT+TGG 0.485477 7_4:-51848476 None:intergenic
GAAGTGTAGATGAAGTGTGT+AGG 0.487123 7_4:+51852005 Msa1161680:CDS
GAGAAGAGACAGAAGCTGCT+TGG 0.490693 7_4:+51848309 Msa1161680:CDS
AGACAAATACACAAGTATAA+GGG 0.494714 7_4:-51852247 None:intergenic
AGTAGCGAGGCTGATGGGAC+TGG 0.494740 7_4:+51848254 Msa1161680:CDS
TGGGGAGAAAATAGAGAGCT+TGG 0.497438 7_4:+51852037 Msa1161680:CDS
ACTCGTTCCGTCGACGTCGC+CGG 0.499621 7_4:+51848401 Msa1161680:CDS
AAGTGTGTAGGGATGTTGCT+TGG 0.504474 7_4:+51852017 Msa1161680:CDS
GTCTTCACCGGAGTCAGTTG+TGG 0.509279 7_4:+51848287 Msa1161680:CDS
ATGAAGATCGTTCAGTTATG+TGG 0.515586 7_4:+51851963 Msa1161680:CDS
CTCTTCTCCACAACTGACTC+CGG 0.518044 7_4:-51848294 None:intergenic
CTTCTCTTACAGGACTCAAA+TGG 0.520799 7_4:-51852145 None:intergenic
GGAAATGAGGTGGAGAATGC+CGG 0.524845 7_4:-51847900 None:intergenic
GCCGGCGGTGGTTAAGCATA+CGG 0.526954 7_4:+51848419 Msa1161680:CDS
GCCGGTAAAGTCGGACTCCT+CGG 0.530010 7_4:-51848171 None:intergenic
GCGTTAGTAGCGAGGCTGAT+GGG 0.534834 7_4:+51848249 Msa1161680:CDS
TGGTGGCAAATTAGCGGTGG+CGG 0.535065 7_4:-51848076 None:intergenic
TTCAGTTATGTGGAGTAGCA+AGG 0.537258 7_4:+51851973 Msa1161680:CDS
AGATTCGCCGTTCGAGTCCA+AGG 0.544649 7_4:+51848196 Msa1161680:CDS
AATTATCACGCGAGGTTCCG+AGG 0.549305 7_4:+51848154 Msa1161680:CDS
TCGAAGACTTACAATGTGAA+TGG 0.555380 7_4:-51848554 None:intergenic
TGATAATTTCGAATTTCGTA+CGG 0.556195 7_4:-51848139 None:intergenic
CTCGAACGGCGAATCTCCGC+CGG 0.556248 7_4:-51848189 None:intergenic
ACAACTGACTCCGGTGAAGA+CGG 0.558552 7_4:-51848285 None:intergenic
GGAATCGCTTCCGTCTTCAC+CGG 0.560395 7_4:+51848275 Msa1161680:CDS
ATTTGTCTAACAAATTACAT+TGG 0.560698 7_4:+51852262 Msa1161680:three_prime_UTR
CAGCAGTTACTGAAGAAGCC+AGG 0.563875 7_4:+51851866 Msa1161680:CDS
TTTGCAGGATTGTATATGCA+GGG 0.564322 7_4:+51852075 Msa1161680:CDS
CTCAGTCCAAATTGTCACTC+CGG 0.564508 7_4:+51848528 Msa1161680:CDS
CGAAGGTAAGGAAACGGCGG+TGG 0.570537 7_4:-51847940 None:intergenic
GTGAAGTGTTCGGTGGTTAA+CGG 0.571904 7_4:+51848450 Msa1161680:CDS
ACCGTATGCTTAACCACCGC+CGG 0.573875 7_4:-51848420 None:intergenic
CGAATCTCCGCCGGTAAAGT+CGG 0.575052 7_4:-51848180 None:intergenic
ATTAGCGGTGGCGGTGACGG+TGG 0.575627 7_4:-51848067 None:intergenic
ACCACCGCCGGCGACGTCGA+CGG 0.576349 7_4:-51848408 None:intergenic
CGAGAGAATGACAAACGAGT+TGG 0.576947 7_4:+51851922 Msa1161680:CDS
TGGTGTAATAAAGAGTATAA+CGG 0.579233 7_4:-51847752 None:intergenic
GTGGCGACGGGAATGAGAAG+TGG 0.589471 7_4:-51847921 None:intergenic
TTCTGGTGGCAAATTAGCGG+TGG 0.590543 7_4:-51848079 None:intergenic
GGGAATGAGAAGTGGAAATG+AGG 0.592567 7_4:-51847913 None:intergenic
GAGATGCGACGAGGATCTCA+AGG 0.595528 7_4:+51848341 Msa1161680:CDS
GGTTTGTGAGGTGAAGTGTT+CGG 0.599032 7_4:+51848440 Msa1161680:CDS
AATGAGAAGTGGAAATGAGG+TGG 0.606615 7_4:-51847910 None:intergenic
ACGAACCGAAGGTAAGGAAA+CGG 0.606713 7_4:-51847946 None:intergenic
ATCAGCCTCGCTACTAACGC+TGG 0.612829 7_4:-51848246 None:intergenic
TCAAGAACAGACACAGGACT+CGG 0.613130 7_4:-51848486 None:intergenic
TCAGTTATGTGGAGTAGCAA+GGG 0.613803 7_4:+51851974 Msa1161680:CDS
TTCGAGTCCAAGGAAGTCAT+CGG 0.619932 7_4:+51848206 Msa1161680:CDS
CTTACAATGTGAATGGCGAC+CGG 0.622655 7_4:-51848547 None:intergenic
AGCGTTAGTAGCGAGGCTGA+TGG 0.630450 7_4:+51848248 Msa1161680:CDS
AAACACCAGCGTTAGTAGCG+AGG 0.630494 7_4:+51848241 Msa1161680:CDS
GGTTAAGCATACGGTTTGTG+AGG 0.632063 7_4:+51848428 Msa1161680:CDS
CGTTCCGTCGACGTCGCCGG+CGG 0.638784 7_4:+51848404 Msa1161680:CDS
GTGTGTAGGGATGTTGCTTG+GGG 0.646863 7_4:+51852019 Msa1161680:CDS
GTTACTGAAGAAGCCAGGAG+AGG 0.659127 7_4:+51851871 Msa1161680:CDS
TTGTGAGGTGAAGTGTTCGG+TGG 0.659789 7_4:+51848443 Msa1161680:CDS
AAATTCGAAATTATCACGCG+AGG 0.662168 7_4:+51848146 Msa1161680:CDS
GTTTCTCGCCGTGAAGACGA+CGG 0.662502 7_4:-51847836 None:intergenic
ATGACTTCCTTGGACTCGAA+CGG 0.668743 7_4:-51848203 None:intergenic
AAGTCGTCAAGAACAGACAC+AGG 0.683064 7_4:-51848492 None:intergenic
TTCACGGCGAGAAACGACGC+CGG 0.686409 7_4:+51847844 Msa1161680:CDS
GAGTGACAATTTGGACTGAG+TGG 0.688078 7_4:-51848525 None:intergenic
GAGGAGTCCGACTTTACCGG+CGG 0.703444 7_4:+51848173 Msa1161680:CDS
AGAAAATCATAGATTCAGTG+AGG 0.716140 7_4:+51848370 Msa1161680:CDS
AGCGTTGCAGAGATGCGACG+AGG 0.722914 7_4:+51848332 Msa1161680:CDS
AACCGAAGGTAAGGAAACGG+CGG 0.755169 7_4:-51847943 None:intergenic
AATGAAGAGACAAAGCAGCG+CGG 0.779162 7_4:+51847808 Msa1161680:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGAAAAAAGAAAAA+GGG + chr7_4:51850007-51850026 Msa1161680:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr7_4:51850201-51850220 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr7_4:51850202-51850221 None:intergenic 10.0%
!! TAATATAAACTAATAAATCA+TGG + chr7_4:51850509-51850528 Msa1161680:intron 10.0%
!!! TTTTACTTAAATAAAAGTAA+TGG - chr7_4:51850947-51850966 None:intergenic 10.0%
!!! TTTGTGTTTTTTTTTTTATT+TGG + chr7_4:51851149-51851168 Msa1161680:intron 10.0%
!!! ATTCAATCATTCAATATTTT+AGG - chr7_4:51848746-51848765 None:intergenic 15.0%
!! AATTCAAAAAAGAAAAATAC+TGG - chr7_4:51849080-51849099 None:intergenic 15.0%
!! ATTAATCCAAAACATAAAAA+GGG - chr7_4:51849160-51849179 None:intergenic 15.0%
!! AATTAATCCAAAACATAAAA+AGG - chr7_4:51849161-51849180 None:intergenic 15.0%
!!! TTGTGTATATTTTAAATGTT+GGG - chr7_4:51849381-51849400 None:intergenic 15.0%
!!! ATTGTGTATATTTTAAATGT+TGG - chr7_4:51849382-51849401 None:intergenic 15.0%
!!! AGAAGTTATGATTTAAAATT+TGG - chr7_4:51849581-51849600 None:intergenic 15.0%
!! AAATTAATCACTGTTAAATT+AGG - chr7_4:51849678-51849697 None:intergenic 15.0%
!! AAATTAATCATAGTTGAATT+AGG - chr7_4:51849745-51849764 None:intergenic 15.0%
!!! TTTTTGTAGTAATAATAGTT+GGG - chr7_4:51849774-51849793 None:intergenic 15.0%
!!! ATTTTTGTAGTAATAATAGT+TGG - chr7_4:51849775-51849794 None:intergenic 15.0%
!! AAATCAATTATACATTCAAT+TGG - chr7_4:51849860-51849879 None:intergenic 15.0%
!! TGTTAATAAAATTGAATAGA+CGG - chr7_4:51849960-51849979 None:intergenic 15.0%
!! CAAAAAAAGAAAAAAGAAAA+AGG + chr7_4:51850006-51850025 Msa1161680:intron 15.0%
!!! TTTTTTTTTAGAAAATGAGT+CGG - chr7_4:51850063-51850082 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr7_4:51850200-51850219 None:intergenic 15.0%
!! AAAATTGTGTCAATTAAATT+GGG + chr7_4:51850237-51850256 Msa1161680:intron 15.0%
!!! AGTTTATATTATTATCGTTT+TGG - chr7_4:51850500-51850519 None:intergenic 15.0%
!! GAGAAAAAATTTATAATGTA+GGG + chr7_4:51851096-51851115 Msa1161680:intron 15.0%
!! TTAATTATAAGAGAATCAAT+TGG + chr7_4:51851531-51851550 Msa1161680:intron 15.0%
!! TAATTATAAGAGAATCAATT+GGG + chr7_4:51851532-51851551 Msa1161680:intron 15.0%
!!! TATTTTATGTTTTACTAGCA+AGG + chr7_4:51848852-51848871 Msa1161680:intron 20.0%
!!! ATCGTCTTGTTTTTTTTTTT+TGG + chr7_4:51849033-51849052 Msa1161680:intron 20.0%
!!! ATTGCTTCCTAATTTTATTT+TGG + chr7_4:51849178-51849197 Msa1161680:intron 20.0%
!! ATGTACTCCAAAATAAAATT+AGG - chr7_4:51849188-51849207 None:intergenic 20.0%
!! ACTAAAATGCATGTAATTAT+CGG - chr7_4:51849294-51849313 None:intergenic 20.0%
!!! TCCATTTTTCCATTTTTTTT+AGG + chr7_4:51849552-51849571 Msa1161680:intron 20.0%
!! TCCTAAAAAAAATGGAAAAA+TGG - chr7_4:51849556-51849575 None:intergenic 20.0%
!!! CACAGACAATTATAAAATTT+TGG + chr7_4:51849884-51849903 Msa1161680:intron 20.0%
!! TATTAACATATCATGATTAG+TGG + chr7_4:51849972-51849991 Msa1161680:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr7_4:51850177-51850196 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG + chr7_4:51850236-51850255 Msa1161680:intron 20.0%
!! TTTCTTATAGTACAAAATAG+TGG - chr7_4:51850558-51850577 None:intergenic 20.0%
!!! ACTATTTTGTACTATAAGAA+AGG + chr7_4:51850557-51850576 Msa1161680:intron 20.0%
!! TCTCTTATTGTGTTTATATA+AGG + chr7_4:51850862-51850881 Msa1161680:intron 20.0%
!! GGAGAAAAAATTTATAATGT+AGG + chr7_4:51851095-51851114 Msa1161680:intron 20.0%
!! AAAATTTATAATGTAGGGAA+AGG + chr7_4:51851101-51851120 Msa1161680:intron 20.0%
!! AAATTTATAATGTAGGGAAA+GGG + chr7_4:51851102-51851121 Msa1161680:intron 20.0%
!!! GGTAGTGTATATATATTTTT+TGG + chr7_4:51851170-51851189 Msa1161680:intron 20.0%
!!! GTTTTAACATTCAAATTTCT+AGG - chr7_4:51851647-51851666 None:intergenic 20.0%
!! AAACAAATGTCTATATAACA+TGG + chr7_4:51851693-51851712 Msa1161680:intron 20.0%
!! AAAATAAAACTGATGTCTAA+TGG + chr7_4:51851806-51851825 Msa1161680:intron 20.0%
!! ATTTGTCTAACAAATTACAT+TGG + chr7_4:51852262-51852281 Msa1161680:three_prime_UTR 20.0%
! TGATAATTTCGAATTTCGTA+CGG - chr7_4:51848142-51848161 None:intergenic 25.0%
! AGTGTTTATGTTTGATATCA+CGG + chr7_4:51848645-51848664 Msa1161680:intron 25.0%
! AAATCATGCAATTTACACAT+TGG - chr7_4:51848785-51848804 None:intergenic 25.0%
!!! TGATTTTAACATACTTTGCA+TGG + chr7_4:51848799-51848818 Msa1161680:intron 25.0%
! GATGATAGATCATTAGAAAA+AGG + chr7_4:51848946-51848965 Msa1161680:intron 25.0%
! GATGAACTGATTAACTATTT+AGG + chr7_4:51849002-51849021 Msa1161680:intron 25.0%
! TCAAAAAAGAAAAATACTGG+TGG - chr7_4:51849077-51849096 None:intergenic 25.0%
!!! TGAATTTGCTTTTAAGAGTT+AGG + chr7_4:51849094-51849113 Msa1161680:intron 25.0%
!! TAAACTCCCTTTTTATGTTT+TGG + chr7_4:51849151-51849170 Msa1161680:intron 25.0%
! GGAGTACATAATTGAATAAA+TGG + chr7_4:51849199-51849218 Msa1161680:intron 25.0%
!!! AGTTGTTAGATTAAGTTGAA+TGG + chr7_4:51849311-51849330 Msa1161680:intron 25.0%
!!! GATTGTAAATGCTTTTTCAT+AGG - chr7_4:51849429-51849448 None:intergenic 25.0%
! ATGTATATGAATTTCCTTAC+AGG + chr7_4:51849488-51849507 Msa1161680:intron 25.0%
! AAAAATGGAAAAATGGATAG+AGG - chr7_4:51849549-51849568 None:intergenic 25.0%
! ATTTGGCATCCTAAAAAAAA+TGG - chr7_4:51849564-51849583 None:intergenic 25.0%
! GTTAATCACATGTAAAATTG+TGG + chr7_4:51849829-51849848 Msa1161680:intron 25.0%
! CAATTCAAGGTCAAAATTTA+TGG - chr7_4:51849931-51849950 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr7_4:51850089-51850108 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr7_4:51850090-51850109 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr7_4:51850178-51850197 None:intergenic 25.0%
! ACTAATAAATCATGGTACTT+TGG + chr7_4:51850517-51850536 Msa1161680:intron 25.0%
! AAAGATGTTTCAAAAGGAAA+AGG + chr7_4:51850623-51850642 Msa1161680:intron 25.0%
! GAAACAGTTTATCATTATTG+AGG + chr7_4:51850884-51850903 Msa1161680:intron 25.0%
! TCAATACCAAAATTAGTTGT+TGG + chr7_4:51850997-51851016 Msa1161680:intron 25.0%
! CAATACCAAAATTAGTTGTT+GGG + chr7_4:51850998-51851017 Msa1161680:intron 25.0%
! ATATTCAACCTAAGTCTATT+TGG + chr7_4:51851063-51851082 Msa1161680:intron 25.0%
!!! ATAGCTTTGAACCATATTTT+TGG - chr7_4:51851314-51851333 None:intergenic 25.0%
! AAAAATATGGTTCAAAGCTA+TGG + chr7_4:51851313-51851332 Msa1161680:intron 25.0%
! TTCAGTCAAAATTTGAACTT+AGG - chr7_4:51851562-51851581 None:intergenic 25.0%
! AATTGAGCTCTTAATTGTTA+GGG + chr7_4:51851610-51851629 Msa1161680:intron 25.0%
!! CATTCAAATTTCTAGGAAAA+TGG - chr7_4:51851640-51851659 None:intergenic 25.0%
! AGACAAATACACAAGTATAA+GGG - chr7_4:51852250-51852269 None:intergenic 25.0%
! TAGACAAATACACAAGTATA+AGG - chr7_4:51852251-51852270 None:intergenic 25.0%
! TCTCTTATGAAAGTGAGTTT+TGG - chr7_4:51847785-51847804 None:intergenic 30.0%
AAAATTCACGTCAAGACAAT+TGG + chr7_4:51847869-51847888 Msa1161680:CDS 30.0%
CCTGAAAATGAGAACAAAAA+AGG - chr7_4:51848021-51848040 None:intergenic 30.0%
!!! CCTTTTTTGTTCTCATTTTC+AGG + chr7_4:51848018-51848037 Msa1161680:intron 30.0%
!!! TTCTTCTCATTCGTTTTTTC+TGG - chr7_4:51848099-51848118 None:intergenic 30.0%
AGAAAATCATAGATTCAGTG+AGG + chr7_4:51848370-51848389 Msa1161680:CDS 30.0%
! CCGTGATTTTGCAAAAATTA+GGG - chr7_4:51848694-51848713 None:intergenic 30.0%
! CCCTAATTTTTGCAAAATCA+CGG + chr7_4:51848691-51848710 Msa1161680:intron 30.0%
! ACCGTGATTTTGCAAAAATT+AGG - chr7_4:51848695-51848714 None:intergenic 30.0%
! TAATTTTTGCAAAATCACGG+TGG + chr7_4:51848694-51848713 Msa1161680:intron 30.0%
ATCATAGTTGAATTAGGTTC+TGG - chr7_4:51849739-51849758 None:intergenic 30.0%
TAGTAATAATAGTTGGGAAG+AGG - chr7_4:51849768-51849787 None:intergenic 30.0%
! GTGATTAACCAGATGTTTTA+GGG - chr7_4:51849818-51849837 None:intergenic 30.0%
! TGTGATTAACCAGATGTTTT+AGG - chr7_4:51849819-51849838 None:intergenic 30.0%
TAGACGGTTAATTCAATTCA+AGG - chr7_4:51849944-51849963 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr7_4:51850193-51850212 None:intergenic 30.0%
AATTCCGGTTCTATAGTATA+GGG - chr7_4:51850287-51850306 None:intergenic 30.0%
TAATTCCGGTTCTATAGTAT+AGG - chr7_4:51850288-51850307 None:intergenic 30.0%
! AGTTAGCTTCTCTTTAATTC+CGG - chr7_4:51850302-51850321 None:intergenic 30.0%
AATAAATCATGGTACTTTGG+TGG + chr7_4:51850520-51850539 Msa1161680:intron 30.0%
CAGTCAAAAGATGTTTCAAA+AGG + chr7_4:51850617-51850636 Msa1161680:intron 30.0%
ATGTTTCAAAAGGAAAAGGA+GGG + chr7_4:51850627-51850646 Msa1161680:intron 30.0%
! AATTTTCTGTACACCATTGT+TGG - chr7_4:51851037-51851056 None:intergenic 30.0%
! TTTGTGTTTAGTTCAACTAG+AGG + chr7_4:51851204-51851223 Msa1161680:intron 30.0%
! TTTTCACTCGAGCTAAAATT+AGG + chr7_4:51851268-51851287 Msa1161680:intron 30.0%
!!! CTTTGAACCATATTTTTGGT+CGG - chr7_4:51851310-51851329 None:intergenic 30.0%
!!! GTTCAAATTTTGACTGAAGT+TGG + chr7_4:51851564-51851583 Msa1161680:intron 30.0%
CAATTGAGCTCTTAATTGTT+AGG + chr7_4:51851609-51851628 Msa1161680:intron 30.0%
! AAAGTGTTATAAGCTAGAAG+TGG - chr7_4:51851771-51851790 None:intergenic 30.0%
GAAGAGATTGTTAGAGAATT+AGG + chr7_4:51852106-51852125 Msa1161680:CDS 30.0%
CAAATTACATTGGATTTAGC+TGG + chr7_4:51852272-51852291 Msa1161680:three_prime_UTR 30.0%
!! CTTATGAAAGTGAGTTTTGG+TGG - chr7_4:51847782-51847801 None:intergenic 35.0%
!! TTTTTCTGGTGGCAAATTAG+CGG - chr7_4:51848085-51848104 None:intergenic 35.0%
!!! TTCTCATTCGTTTTTTCTGG+TGG - chr7_4:51848096-51848115 None:intergenic 35.0%
AAATTCGAAATTATCACGCG+AGG + chr7_4:51848146-51848165 Msa1161680:CDS 35.0%
TCGAAGACTTACAATGTGAA+TGG - chr7_4:51848557-51848576 None:intergenic 35.0%
ACATAAACACTGACGCTAAT+TGG - chr7_4:51848636-51848655 None:intergenic 35.0%
! AGGAACAGAGTTTACGTTTT+AGG + chr7_4:51848872-51848891 Msa1161680:intron 35.0%
! TGCGAAATGACTAAAAGTGT+GGG + chr7_4:51849117-51849136 Msa1161680:intron 35.0%
AAGTTGACATGTACTACTCT+TGG + chr7_4:51849257-51849276 Msa1161680:intron 35.0%
AGTTGACATGTACTACTCTT+GGG + chr7_4:51849258-51849277 Msa1161680:intron 35.0%
AAATCATTGTGTCTCCTGTA+AGG - chr7_4:51849505-51849524 None:intergenic 35.0%
TCTTCTATTCCACAACATCA+TGG + chr7_4:51849598-51849617 Msa1161680:intron 35.0%
AAGATGATTGCATAACCAAC+AGG - chr7_4:51849652-51849671 None:intergenic 35.0%
TTCTGGATGAATGAGCTAAA+GGG - chr7_4:51849722-51849741 None:intergenic 35.0%
!!! CAGATGTTTTAGGGAAAAAC+GGG - chr7_4:51849809-51849828 None:intergenic 35.0%
!!! CCAGATGTTTTAGGGAAAAA+CGG - chr7_4:51849810-51849829 None:intergenic 35.0%
AGAAAATGAGTCGGTTATTC+CGG - chr7_4:51850054-51850073 None:intergenic 35.0%
TGTCAATTAAATTGGGACTG+AGG + chr7_4:51850244-51850263 Msa1161680:intron 35.0%
GTTTCCCTATACTATAGAAC+CGG + chr7_4:51850280-51850299 Msa1161680:intron 35.0%
! TAACTAATGACCGTTTTGCT+GGG + chr7_4:51850317-51850336 Msa1161680:intron 35.0%
ATGTAATGGTATGGTGACAT+TGG - chr7_4:51850368-51850387 None:intergenic 35.0%
CATAATTCATAGCTAGCATG+AGG - chr7_4:51850589-51850608 None:intergenic 35.0%
GATGTTTCAAAAGGAAAAGG+AGG + chr7_4:51850626-51850645 Msa1161680:intron 35.0%
GCAGGTAATAAAGTTCCAAA+GGG - chr7_4:51850674-51850693 None:intergenic 35.0%
! AAACAAGGCTCTTGTTTGTT+GGG - chr7_4:51850768-51850787 None:intergenic 35.0%
TACCAAAATTAGTTGTTGGG+TGG + chr7_4:51851001-51851020 Msa1161680:intron 35.0%
ACCAAAATTAGTTGTTGGGT+GGG + chr7_4:51851002-51851021 Msa1161680:intron 35.0%
! CCTAAGTCTATTTGGTTCAA+CGG + chr7_4:51851071-51851090 Msa1161680:intron 35.0%
TAATGTAGGGAAAGGGAAAA+AGG + chr7_4:51851109-51851128 Msa1161680:intron 35.0%
AATGTAGGGAAAGGGAAAAA+GGG + chr7_4:51851110-51851129 Msa1161680:intron 35.0%
CGAGCTAAAATTAGGTTACA+TGG + chr7_4:51851276-51851295 Msa1161680:intron 35.0%
TTACCTTCCGACCAAAAATA+TGG + chr7_4:51851300-51851319 Msa1161680:intron 35.0%
ATATGGTTCAAAGCTATGGA+TGG + chr7_4:51851317-51851336 Msa1161680:intron 35.0%
CTATGGATGGAATACCATAA+GGG + chr7_4:51851330-51851349 Msa1161680:intron 35.0%
ACTAAGTGATTGAACTCAAG+TGG + chr7_4:51851498-51851517 Msa1161680:intron 35.0%
TGTTATAAGCTAGAAGTGGA+AGG - chr7_4:51851767-51851786 None:intergenic 35.0%
ATGAAGATCGTTCAGTTATG+TGG + chr7_4:51851963-51851982 Msa1161680:CDS 35.0%
AAGTGTAGATGAAGTGTGTA+GGG + chr7_4:51852006-51852025 Msa1161680:CDS 35.0%
AATAGAGAGCTTGGAAGAAT+AGG + chr7_4:51852046-51852065 Msa1161680:CDS 35.0%
!! AAGAATAGGATTAGCTTTGC+AGG + chr7_4:51852060-51852079 Msa1161680:CDS 35.0%
TTTGCAGGATTGTATATGCA+GGG + chr7_4:51852075-51852094 Msa1161680:CDS 35.0%
! GTCTTGACGTGAATTTTGTC+CGG - chr7_4:51847866-51847885 None:intergenic 40.0%
AATGAGAAGTGGAAATGAGG+TGG - chr7_4:51847913-51847932 None:intergenic 40.0%
ATATTCTCCGATGACTTCCT+TGG - chr7_4:51848216-51848235 None:intergenic 40.0%
ACGGTGAGTTTATTGAGATC+AGG + chr7_4:51848664-51848683 Msa1161680:intron 40.0%
TAGGTGCGTGTTTAGTGTTA+AGG - chr7_4:51848727-51848746 None:intergenic 40.0%
GTGCGAAATGACTAAAAGTG+TGG + chr7_4:51849116-51849135 Msa1161680:intron 40.0%
! GCGAAATGACTAAAAGTGTG+GGG + chr7_4:51849118-51849137 Msa1161680:intron 40.0%
! CGAAATGACTAAAAGTGTGG+GGG + chr7_4:51849119-51849138 Msa1161680:intron 40.0%
! GAAATGACTAAAAGTGTGGG+GGG + chr7_4:51849120-51849139 Msa1161680:intron 40.0%
! AAATGACTAAAAGTGTGGGG+GGG + chr7_4:51849121-51849140 Msa1161680:intron 40.0%
CATGTACTACTCTTGGGATT+TGG + chr7_4:51849264-51849283 Msa1161680:intron 40.0%
ATATGATGGCCATGATGTTG+TGG - chr7_4:51849610-51849629 None:intergenic 40.0%
ACATCATGGCCATCATATAG+TGG + chr7_4:51849612-51849631 Msa1161680:intron 40.0%
AGTTGTCTGCCACTATATGA+TGG - chr7_4:51849624-51849643 None:intergenic 40.0%
GCAGACAACTTAATTCCTGT+TGG + chr7_4:51849634-51849653 Msa1161680:intron 40.0%
TCTGGATGAATGAGCTAAAG+GGG - chr7_4:51849721-51849740 None:intergenic 40.0%
! GTTCTGGATGAATGAGCTAA+AGG - chr7_4:51849723-51849742 None:intergenic 40.0%
!! CCGTTTTTCCCTAAAACATC+TGG + chr7_4:51849807-51849826 Msa1161680:intron 40.0%
GAAAATGAGTCGGTTATTCC+GGG - chr7_4:51850053-51850072 None:intergenic 40.0%
! CTAACTAATGACCGTTTTGC+TGG + chr7_4:51850316-51850335 Msa1161680:intron 40.0%
!! AACCACTTTGGTGCCATTAA+TGG + chr7_4:51850340-51850359 Msa1161680:intron 40.0%
TGACTTAGCTTACGTGACAT+TGG - chr7_4:51850448-51850467 None:intergenic 40.0%
AATCATGGTACTTTGGTGGA+TGG + chr7_4:51850524-51850543 Msa1161680:intron 40.0%
AAGAAATACACACCACCCTT+TGG + chr7_4:51850656-51850675 Msa1161680:intron 40.0%
GGTAATAAAGTTCCAAAGGG+TGG - chr7_4:51850671-51850690 None:intergenic 40.0%
GGCAGGTAATAAAGTTCCAA+AGG - chr7_4:51850675-51850694 None:intergenic 40.0%
!!! ATGCAGAAACGCACTTTTTC+AGG + chr7_4:51850702-51850721 Msa1161680:intron 40.0%
!!! TGCAGAAACGCACTTTTTCA+GGG + chr7_4:51850703-51850722 Msa1161680:intron 40.0%
! CAAACAAGGCTCTTGTTTGT+TGG - chr7_4:51850769-51850788 None:intergenic 40.0%
! ACCCACCCAACAACTAATTT+TGG - chr7_4:51851006-51851025 None:intergenic 40.0%
CCGTTGAACCAAATAGACTT+AGG - chr7_4:51851074-51851093 None:intergenic 40.0%
! AAGTCTATTTGGTTCAACGG+AGG + chr7_4:51851074-51851093 Msa1161680:intron 40.0%
! GTTTAGTTCAACTAGAGGAG+TGG + chr7_4:51851209-51851228 Msa1161680:intron 40.0%
!!! GAACCATATTTTTGGTCGGA+AGG - chr7_4:51851306-51851325 None:intergenic 40.0%
GCTATGGATGGAATACCATA+AGG + chr7_4:51851329-51851348 Msa1161680:intron 40.0%
TTCAGTTATGTGGAGTAGCA+AGG + chr7_4:51851973-51851992 Msa1161680:CDS 40.0%
TCAGTTATGTGGAGTAGCAA+GGG + chr7_4:51851974-51851993 Msa1161680:CDS 40.0%
GAAGTGTAGATGAAGTGTGT+AGG + chr7_4:51852005-51852024 Msa1161680:CDS 40.0%
CTTTGCAGGATTGTATATGC+AGG + chr7_4:51852074-51852093 Msa1161680:CDS 40.0%
CTTCTCTTACAGGACTCAAA+TGG - chr7_4:51852148-51852167 None:intergenic 40.0%
CTCTGCTTCTGAACTATACA+TGG + chr7_4:51852169-51852188 Msa1161680:exon 40.0%
!!! AAGTGAGTTTTGGTGGTGAG+TGG - chr7_4:51847775-51847794 None:intergenic 45.0%
AATGAAGAGACAAAGCAGCG+CGG + chr7_4:51847808-51847827 Msa1161680:exon 45.0%
AAGACAATTGGCTGCATGTC+CGG + chr7_4:51847881-51847900 Msa1161680:CDS 45.0%
GGGAATGAGAAGTGGAAATG+AGG - chr7_4:51847916-51847935 None:intergenic 45.0%
ACGAACCGAAGGTAAGGAAA+CGG - chr7_4:51847949-51847968 None:intergenic 45.0%
AACGAAACGAACCGAAGGTA+AGG - chr7_4:51847955-51847974 None:intergenic 45.0%
AACGAAACGAAACGAACCGA+AGG - chr7_4:51847960-51847979 None:intergenic 45.0%
ATGACTTCCTTGGACTCGAA+CGG - chr7_4:51848206-51848225 None:intergenic 45.0%
TTCGAGTCCAAGGAAGTCAT+CGG + chr7_4:51848206-51848225 Msa1161680:CDS 45.0%
GGTTAAGCATACGGTTTGTG+AGG + chr7_4:51848428-51848447 Msa1161680:CDS 45.0%
! GGTTTGTGAGGTGAAGTGTT+CGG + chr7_4:51848440-51848459 Msa1161680:CDS 45.0%
! GTGAAGTGTTCGGTGGTTAA+CGG + chr7_4:51848450-51848469 Msa1161680:CDS 45.0%
TCAAGAACAGACACAGGACT+CGG - chr7_4:51848489-51848508 None:intergenic 45.0%
AAGTCGTCAAGAACAGACAC+AGG - chr7_4:51848495-51848514 None:intergenic 45.0%
GAGTGACAATTTGGACTGAG+TGG - chr7_4:51848528-51848547 None:intergenic 45.0%
CTCAGTCCAAATTGTCACTC+CGG + chr7_4:51848528-51848547 Msa1161680:CDS 45.0%
CTTACAATGTGAATGGCGAC+CGG - chr7_4:51848550-51848569 None:intergenic 45.0%
GCGTGTTTAGTGTTAAGGCA+CGG - chr7_4:51848722-51848741 None:intergenic 45.0%
! AATGACTAAAAGTGTGGGGG+GGG + chr7_4:51849122-51849141 Msa1161680:intron 45.0%
CAAAGTGGTTCCCAGCAAAA+CGG - chr7_4:51850330-51850349 None:intergenic 45.0%
TGCCATTAATGGCACCAAAG+TGG - chr7_4:51850345-51850364 None:intergenic 45.0%
!! GGTGACATTGGTGCCATTAA+TGG - chr7_4:51850356-51850375 None:intergenic 45.0%
! GTGGTGGAGATGTAATGGTA+TGG - chr7_4:51850377-51850396 None:intergenic 45.0%
! TGTGTGTGGTGGAGATGTAA+TGG - chr7_4:51850382-51850401 None:intergenic 45.0%
CACATTCCCACACACATCAA+CGG + chr7_4:51850402-51850421 Msa1161680:intron 45.0%
!! TACGTGACATTGGTGCCATT+GGG - chr7_4:51850438-51850457 None:intergenic 45.0%
!! TTACGTGACATTGGTGCCAT+TGG - chr7_4:51850439-51850458 None:intergenic 45.0%
! TTTTGGACCAGAGCAAAACG+GGG - chr7_4:51850483-51850502 None:intergenic 45.0%
!! GTTTTGGACCAGAGCAAAAC+GGG - chr7_4:51850484-51850503 None:intergenic 45.0%
!! CGTTTTGGACCAGAGCAAAA+CGG - chr7_4:51850485-51850504 None:intergenic 45.0%
! GTACTTTGGTGGATGGATCT+TGG + chr7_4:51850531-51850550 Msa1161680:intron 45.0%
AGTGCGTTTCTGCATGACTA+GGG - chr7_4:51850697-51850716 None:intergenic 45.0%
AAGTGCGTTTCTGCATGACT+AGG - chr7_4:51850698-51850717 None:intergenic 45.0%
GAGAAGACAACGTCTTCATC+AGG - chr7_4:51850846-51850865 None:intergenic 45.0%
GTACACCATTGTTGGTACCA+GGG - chr7_4:51851029-51851048 None:intergenic 45.0%
TGTACACCATTGTTGGTACC+AGG - chr7_4:51851030-51851049 None:intergenic 45.0%
ATACCATAAGGGTTCTCGCA+TGG + chr7_4:51851341-51851360 Msa1161680:intron 45.0%
!! CTGTTGATTTCTTCCTCTCC+TGG - chr7_4:51851887-51851906 None:intergenic 45.0%
CGAGAGAATGACAAACGAGT+TGG + chr7_4:51851922-51851941 Msa1161680:CDS 45.0%
AAGTGTGTAGGGATGTTGCT+TGG + chr7_4:51852017-51852036 Msa1161680:CDS 45.0%
! AGTGTGTAGGGATGTTGCTT+GGG + chr7_4:51852018-51852037 Msa1161680:CDS 45.0%
TGGGGAGAAAATAGAGAGCT+TGG + chr7_4:51852037-51852056 Msa1161680:CDS 45.0%
GAAGCAGAGTCTTCTCTTAC+AGG - chr7_4:51852158-51852177 None:intergenic 45.0%
!! TATTAAAAATTAAATTAATG+TGG + chr7_4:51849234-51849253 Msa1161680:intron 5.0%
GGAAATGAGGTGGAGAATGC+CGG - chr7_4:51847903-51847922 None:intergenic 50.0%
AACCGAAGGTAAGGAAACGG+CGG - chr7_4:51847946-51847965 None:intergenic 50.0%
TTCTGGTGGCAAATTAGCGG+TGG - chr7_4:51848082-51848101 None:intergenic 50.0%
AATTATCACGCGAGGTTCCG+AGG + chr7_4:51848154-51848173 Msa1161680:CDS 50.0%
AAACACCAGCGTTAGTAGCG+AGG + chr7_4:51848241-51848260 Msa1161680:CDS 50.0%
! ACAACTGACTCCGGTGAAGA+CGG - chr7_4:51848288-51848307 None:intergenic 50.0%
! CTCTTCTCCACAACTGACTC+CGG - chr7_4:51848297-51848316 None:intergenic 50.0%
GAGAAGAGACAGAAGCTGCT+TGG + chr7_4:51848309-51848328 Msa1161680:CDS 50.0%
! TTGTGAGGTGAAGTGTTCGG+TGG + chr7_4:51848443-51848462 Msa1161680:CDS 50.0%
ATATGATACTCCCTCCGTCC+CGG + chr7_4:51850032-51850051 Msa1161680:intron 50.0%
ATGAGTCGGTTATTCCGGGA+CGG - chr7_4:51850049-51850068 None:intergenic 50.0%
! CGTTTTGCTGGGAACCACTT+TGG + chr7_4:51850328-51850347 Msa1161680:intron 50.0%
TGTGTGGGAATGTGTGTGTG+TGG - chr7_4:51850396-51850415 None:intergenic 50.0%
TCTTGGCCGTTGATGTGTGT+GGG - chr7_4:51850411-51850430 None:intergenic 50.0%
ATCTTGGCCGTTGATGTGTG+TGG - chr7_4:51850412-51850431 None:intergenic 50.0%
AACGGCCAAGATTTCCCCAA+TGG + chr7_4:51850420-51850439 Msa1161680:intron 50.0%
!! TGGTGCCATTGGGGAAATCT+TGG - chr7_4:51850428-51850447 None:intergenic 50.0%
!! ACGTGACATTGGTGCCATTG+GGG - chr7_4:51850437-51850456 None:intergenic 50.0%
! GTATTTCCCCCGTTTTGCTC+TGG + chr7_4:51850473-51850492 Msa1161680:intron 50.0%
TTTGGACCAGAGCAAAACGG+GGG - chr7_4:51850482-51850501 None:intergenic 50.0%
GTGCGTTTCTGCATGACTAG+GGG - chr7_4:51850696-51850715 None:intergenic 50.0%
! GCTCTTGTTTGTTGGGAGGA+GGG - chr7_4:51850761-51850780 None:intergenic 50.0%
! CAAGGCTCTTGTTTGTTGGG+AGG - chr7_4:51850765-51850784 None:intergenic 50.0%
GCGCGAGCAAGTAACAAACA+AGG - chr7_4:51850783-51850802 None:intergenic 50.0%
! TGTTTGTTACTTGCTCGCGC+AGG + chr7_4:51850783-51850802 Msa1161680:intron 50.0%
CGCAGGTACTTCATTTCTGC+AGG + chr7_4:51850800-51850819 Msa1161680:intron 50.0%
TGCAGGTTAATCCATGCGTG+TGG + chr7_4:51850817-51850836 Msa1161680:intron 50.0%
AGGTTAATCCATGCGTGTGG+TGG + chr7_4:51850820-51850839 Msa1161680:intron 50.0%
CATCCATGCGAGAACCCTTA+TGG - chr7_4:51851347-51851366 None:intergenic 50.0%
CATAAGGGTTCTCGCATGGA+TGG + chr7_4:51851345-51851364 Msa1161680:intron 50.0%
CAGCAGTTACTGAAGAAGCC+AGG + chr7_4:51851866-51851885 Msa1161680:CDS 50.0%
GTTACTGAAGAAGCCAGGAG+AGG + chr7_4:51851871-51851890 Msa1161680:CDS 50.0%
! GTGTGTAGGGATGTTGCTTG+GGG + chr7_4:51852019-51852038 Msa1161680:CDS 50.0%
GTTTCTCGCCGTGAAGACGA+CGG - chr7_4:51847839-51847858 None:intergenic 55.0%
CACCGCCGTTTCCTTACCTT+CGG + chr7_4:51847941-51847960 Msa1161680:CDS 55.0%
! CAAATTAGCGGTGGCGGTGA+CGG - chr7_4:51848073-51848092 None:intergenic 55.0%
TGGTGGCAAATTAGCGGTGG+CGG - chr7_4:51848079-51848098 None:intergenic 55.0%
TCCGAGGAGTCCGACTTTAC+CGG + chr7_4:51848170-51848189 Msa1161680:CDS 55.0%
CGAATCTCCGCCGGTAAAGT+CGG - chr7_4:51848183-51848202 None:intergenic 55.0%
AGATTCGCCGTTCGAGTCCA+AGG + chr7_4:51848196-51848215 Msa1161680:CDS 55.0%
ATCAGCCTCGCTACTAACGC+TGG - chr7_4:51848249-51848268 None:intergenic 55.0%
AGCGTTAGTAGCGAGGCTGA+TGG + chr7_4:51848248-51848267 Msa1161680:CDS 55.0%
GCGTTAGTAGCGAGGCTGAT+GGG + chr7_4:51848249-51848268 Msa1161680:CDS 55.0%
GGAATCGCTTCCGTCTTCAC+CGG + chr7_4:51848275-51848294 Msa1161680:CDS 55.0%
GTCTTCACCGGAGTCAGTTG+TGG + chr7_4:51848287-51848306 Msa1161680:CDS 55.0%
GAGATGCGACGAGGATCTCA+AGG + chr7_4:51848341-51848360 Msa1161680:CDS 55.0%
ACCGTATGCTTAACCACCGC+CGG - chr7_4:51848423-51848442 None:intergenic 55.0%
ACACAGGACTCGGCTGTTGT+TGG - chr7_4:51848479-51848498 None:intergenic 55.0%
TGGCGACCGGAGTGACAATT+TGG - chr7_4:51848537-51848556 None:intergenic 55.0%
GTGGGAATGTGTGTGTGTGG+TGG - chr7_4:51850393-51850412 None:intergenic 55.0%
GTTTCTGCATGACTAGGGGC+AGG - chr7_4:51850692-51850711 None:intergenic 55.0%
! TGTTTGTTGGGAGGAGGGAG+TGG - chr7_4:51850756-51850775 None:intergenic 55.0%
! GGCTCTTGTTTGTTGGGAGG+AGG - chr7_4:51850762-51850781 None:intergenic 55.0%
TTAGTTGTTGGGTGGGTCCC+TGG + chr7_4:51851009-51851028 Msa1161680:intron 55.0%
TGGGTCCCTGGTACCAACAA+TGG + chr7_4:51851021-51851040 Msa1161680:intron 55.0%
AAGGGTTCTCGCATGGATGG+TGG + chr7_4:51851348-51851367 Msa1161680:intron 55.0%
TTCACGGCGAGAAACGACGC+CGG + chr7_4:51847844-51847863 Msa1161680:CDS 60.0%
GTGGCGACGGGAATGAGAAG+TGG - chr7_4:51847924-51847943 None:intergenic 60.0%
TAAGGAAACGGCGGTGGCGA+CGG - chr7_4:51847937-51847956 None:intergenic 60.0%
CGAAGGTAAGGAAACGGCGG+TGG - chr7_4:51847943-51847962 None:intergenic 60.0%
GCCGGTAAAGTCGGACTCCT+CGG - chr7_4:51848174-51848193 None:intergenic 60.0%
GAGGAGTCCGACTTTACCGG+CGG + chr7_4:51848173-51848192 Msa1161680:CDS 60.0%
AGTAGCGAGGCTGATGGGAC+TGG + chr7_4:51848254-51848273 Msa1161680:CDS 60.0%
AGCGTTGCAGAGATGCGACG+AGG + chr7_4:51848332-51848351 Msa1161680:CDS 60.0%
GACGTCGACGGAACGAGTTC+AGG - chr7_4:51848399-51848418 None:intergenic 60.0%
GCCGGCGGTGGTTAAGCATA+CGG + chr7_4:51848419-51848438 Msa1161680:CDS 60.0%
GTCGGTTATTCCGGGACGGA+GGG - chr7_4:51850045-51850064 None:intergenic 60.0%
AGTCGGTTATTCCGGGACGG+AGG - chr7_4:51850046-51850065 None:intergenic 60.0%
!! GAGGAGGGAGTGGTTTGGTG+GGG - chr7_4:51850746-51850765 None:intergenic 60.0%
!! GGAGGAGGGAGTGGTTTGGT+GGG - chr7_4:51850747-51850766 None:intergenic 60.0%
GTTGGGAGGAGGGAGTGGTT+TGG - chr7_4:51850751-51850770 None:intergenic 60.0%
TCATCAGGCCACCACACGCA+TGG - chr7_4:51850831-51850850 None:intergenic 60.0%
!! CGGTGTCGCCGTCGTCTTCA+CGG + chr7_4:51847828-51847847 Msa1161680:CDS 65.0%
AAGGAAACGGCGGTGGCGAC+GGG - chr7_4:51847936-51847955 None:intergenic 65.0%
! ATTAGCGGTGGCGGTGACGG+TGG - chr7_4:51848070-51848089 None:intergenic 65.0%
CTCGAACGGCGAATCTCCGC+CGG - chr7_4:51848192-51848211 None:intergenic 65.0%
ACTCGTTCCGTCGACGTCGC+CGG + chr7_4:51848401-51848420 Msa1161680:CDS 65.0%
! GGGAGGAGGGAGTGGTTTGG+TGG - chr7_4:51850748-51850767 None:intergenic 65.0%
CGTTCCGTCGACGTCGCCGG+CGG + chr7_4:51848404-51848423 Msa1161680:CDS 75.0%
ACCACCGCCGGCGACGTCGA+CGG - chr7_4:51848411-51848430 None:intergenic 75.0%
! TCCGTCGACGTCGCCGGCGG+TGG + chr7_4:51848407-51848426 Msa1161680:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 51847753 51852356 51847753 ID=Msa1161680;Name=Msa1161680
chr7_4 mRNA 51847753 51852356 51847753 ID=Msa1161680-mRNA-1;Parent=Msa1161680;Name=Msa1161680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=56|1|1|1|1|1|3|176|337
chr7_4 exon 51847753 51847962 51847753 ID=Msa1161680-mRNA-1:exon:14760;Parent=Msa1161680-mRNA-1
chr7_4 exon 51848040 51848564 51848040 ID=Msa1161680-mRNA-1:exon:14761;Parent=Msa1161680-mRNA-1
chr7_4 exon 51851846 51852356 51851846 ID=Msa1161680-mRNA-1:exon:14762;Parent=Msa1161680-mRNA-1
chr7_4 five_prime_UTR 51847753 51847808 51847753 ID=Msa1161680-mRNA-1:five_prime_utr;Parent=Msa1161680-mRNA-1
chr7_4 CDS 51847809 51847962 51847809 ID=Msa1161680-mRNA-1:cds;Parent=Msa1161680-mRNA-1
chr7_4 CDS 51848040 51848564 51848040 ID=Msa1161680-mRNA-1:cds;Parent=Msa1161680-mRNA-1
chr7_4 CDS 51851846 51852180 51851846 ID=Msa1161680-mRNA-1:cds;Parent=Msa1161680-mRNA-1
chr7_4 three_prime_UTR 51852181 51852356 51852181 ID=Msa1161680-mRNA-1:three_prime_utr;Parent=Msa1161680-mRNA-1
Gene Sequence

>Msa1161680

ATGAAGAGACAAAGCAGCGCGGTGTCGCCGTCGTCTTCACGGCGAGAAACGACGCCGGACAAAATTCACGTCAAGACAATTGGCTGCATGTCCGGCATTCTCCACCTCATTTCCACTTCTCATTCCCGTCGCCACCGCCGTTTCCTTACCTTCGGTAAGAAACAGTCTAAGAATCAAGTTTCCACCGTCACCGCCACCGCTAATTTGCCACCAGAAAAAACGAATGAGAAGAAGAGTAGTGATGAAGTTTCAACCGTACGAAATTCGAAATTATCACGCGAGGTTCCGAGGAGTCCGACTTTACCGGCGGAGATTCGCCGTTCGAGTCCAAGGAAGTCATCGGAGAATATTCGTGAAACACCAGCGTTAGTAGCGAGGCTGATGGGACTGGAATCGCTTCCGTCTTCACCGGAGTCAGTTGTGGAGAAGAGACAGAAGCTGCTTGGAGCGTTGCAGAGATGCGACGAGGATCTCAAGGTGCTGAAGAAAATCATAGATTCAGTGAGGACTCCTGAACTCGTTCCGTCGACGTCGCCGGCGGTGGTTAAGCATACGGTTTGTGAGGTGAAGTGTTCGGTGGTTAACGGTGACCAACAACAGCCGAGTCCTGTGTCTGTTCTTGACGACTTCACTCGTTCGCCACTCAGTCCAAATTGTCACTCCGGTCGCCATTCACATTCACGAATGCAACAACAGAAGCAGCAGTTACTGAAGAAGCCAGGAGAGGAAGAAATCAACAGCACATTATATATGCACGAGAGAATGACAAACGAGTTGGTTAGTAAGAAAGTCAACGATGAAGATCGTTCAGTTATGTGGAGTAGCAAGGGCATGAAGAGAAGTGTAGATGAAGTGTGTAGGGATGTTGCTTGGGGAGAAAATAGAGAGCTTGGAAGAATAGGATTAGCTTTGCAGGATTGTATATGCAGGGATTTAATTGAAGAGATTGTTAGAGAATTAGGATGCTTGAATACTTTGCCATTTGAGTCCTGTAAGAGAAGACTCTGCTTCTGA

Protein sequence

>Msa1161680

MKRQSSAVSPSSSRRETTPDKIHVKTIGCMSGILHLISTSHSRRHRRFLTFGKKQSKNQVSTVTATANLPPEKTNEKKSSDEVSTVRNSKLSREVPRSPTLPAEIRRSSPRKSSENIRETPALVARLMGLESLPSSPESVVEKRQKLLGALQRCDEDLKVLKKIIDSVRTPELVPSTSPAVVKHTVCEVKCSVVNGDQQQPSPVSVLDDFTRSPLSPNCHSGRHSHSRMQQQKQQLLKKPGEEEINSTLYMHERMTNELVSKKVNDEDRSVMWSSKGMKRSVDEVCRDVAWGENRELGRIGLALQDCICRDLIEEIVRELGCLNTLPFESCKRRLCF*