Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1161680 | XP_003624821.1 | 95.252 | 337 | 16 | 0 | 1 | 337 | 1 | 337 | 0.0 | 607 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1161680 | G7L3Q5 | 95.252 | 337 | 16 | 0 | 1 | 337 | 1 | 337 | 0.0 | 607 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005890 | Msa1161680 | 0.818009 | 2.450896e-52 | -8.615850e-47 |
Msa0018160 | Msa1161680 | 0.822454 | 2.348047e-53 | -8.615850e-47 |
Msa0021500 | Msa1161680 | 0.826926 | 2.075048e-54 | -8.615850e-47 |
Msa0025580 | Msa1161680 | 0.808386 | 3.176866e-50 | -8.615850e-47 |
Msa0028420 | Msa1161680 | 0.817175 | 3.778136e-52 | -8.615850e-47 |
Msa0034210 | Msa1161680 | 0.813494 | 2.488103e-51 | -8.615850e-47 |
Msa0036870 | Msa1161680 | 0.820892 | 5.393245e-53 | -8.615850e-47 |
Msa0047030 | Msa1161680 | 0.810084 | 1.374439e-50 | -8.615850e-47 |
Msa0052260 | Msa1161680 | 0.815224 | 1.031393e-51 | -8.615850e-47 |
Msa0054690 | Msa1161680 | 0.847133 | 1.402107e-59 | -8.615850e-47 |
Msa0081520 | Msa1161680 | 0.801159 | 1.026887e-48 | -8.615850e-47 |
Msa0089630 | Msa1161680 | 0.812370 | 4.386622e-51 | -8.615850e-47 |
Msa0090400 | Msa1161680 | 0.824206 | 9.149405e-54 | -8.615850e-47 |
Msa0092790 | Msa1161680 | 0.804961 | 1.679833e-49 | -8.615850e-47 |
Msa0097260 | Msa1161680 | 0.816302 | 5.932785e-52 | -8.615850e-47 |
Msa0626450 | Msa1161680 | 0.834449 | 2.978591e-56 | -8.615850e-47 |
Msa0626490 | Msa1161680 | 0.831281 | 1.825001e-55 | -8.615850e-47 |
Msa0643300 | Msa1161680 | 0.813081 | 3.066370e-51 | -8.615850e-47 |
Msa0644410 | Msa1161680 | 0.828557 | 8.413688e-55 | -8.615850e-47 |
Msa0658640 | Msa1161680 | 0.812528 | 4.051026e-51 | -8.615850e-47 |
Msa0661150 | Msa1161680 | 0.846314 | 2.347151e-59 | -8.615850e-47 |
Msa0664600 | Msa1161680 | 0.828382 | 9.273136e-55 | -8.615850e-47 |
Msa0683290 | Msa1161680 | 0.806973 | 6.342278e-50 | -8.615850e-47 |
Msa0683570 | Msa1161680 | 0.849827 | 2.518411e-60 | -8.615850e-47 |
Msa0697160 | Msa1161680 | 0.803890 | 2.808395e-49 | -8.615850e-47 |
Msa0700460 | Msa1161680 | 0.818469 | 1.928212e-52 | -8.615850e-47 |
Msa0713700 | Msa1161680 | 0.811411 | 7.097788e-51 | -8.615850e-47 |
Msa0735780 | Msa1161680 | 0.818005 | 2.456322e-52 | -8.615850e-47 |
Msa0738700 | Msa1161680 | 0.805192 | 1.503361e-49 | -8.615850e-47 |
Msa0741220 | Msa1161680 | 0.807245 | 5.554431e-50 | -8.615850e-47 |
Msa0754520 | Msa1161680 | 0.800994 | 1.109814e-48 | -8.615850e-47 |
Msa0756490 | Msa1161680 | 0.814759 | 1.308101e-51 | -8.615850e-47 |
Msa0761670 | Msa1161680 | 0.800105 | 1.684660e-48 | -8.615850e-47 |
Msa0768990 | Msa1161680 | 0.824231 | 9.029848e-54 | -8.615850e-47 |
Msa0783530 | Msa1161680 | 0.807734 | 4.372991e-50 | -8.615850e-47 |
Msa0795870 | Msa1161680 | 0.841830 | 3.744254e-58 | -8.615850e-47 |
Msa0819170 | Msa1161680 | 0.827715 | 1.342123e-54 | -8.615850e-47 |
Msa0824450 | Msa1161680 | 0.808506 | 2.995600e-50 | -8.615850e-47 |
Msa0833650 | Msa1161680 | 0.843948 | 1.023597e-58 | -8.615850e-47 |
Msa0125550 | Msa1161680 | 0.815998 | 6.936228e-52 | -8.615850e-47 |
Msa0128310 | Msa1161680 | 0.822070 | 2.883857e-53 | -8.615850e-47 |
Msa0136650 | Msa1161680 | 0.826278 | 2.960762e-54 | -8.615850e-47 |
Msa0137880 | Msa1161680 | 0.814292 | 1.659171e-51 | -8.615850e-47 |
Msa0140280 | Msa1161680 | 0.800064 | 1.717011e-48 | -8.615850e-47 |
Msa0146040 | Msa1161680 | 0.828159 | 1.049624e-54 | -8.615850e-47 |
Msa0149350 | Msa1161680 | 0.800504 | 1.397391e-48 | -8.615850e-47 |
Msa0174440 | Msa1161680 | 0.810170 | 1.316905e-50 | -8.615850e-47 |
Msa0174450 | Msa1161680 | 0.814897 | 1.219230e-51 | -8.615850e-47 |
Msa0178560 | Msa1161680 | 0.814904 | 1.214768e-51 | -8.615850e-47 |
Msa0180650 | Msa1161680 | 0.804348 | 2.255681e-49 | -8.615850e-47 |
Msa0182190 | Msa1161680 | 0.807882 | 4.068943e-50 | -8.615850e-47 |
Msa0182240 | Msa1161680 | 0.826254 | 3.000647e-54 | -8.615850e-47 |
Msa0190570 | Msa1161680 | 0.816535 | 5.259084e-52 | -8.615850e-47 |
Msa0200050 | Msa1161680 | 0.806153 | 9.445480e-50 | -8.615850e-47 |
Msa0222560 | Msa1161680 | 0.806623 | 7.520117e-50 | -8.615850e-47 |
Msa0225100 | Msa1161680 | 0.809364 | 1.962495e-50 | -8.615850e-47 |
Msa0225860 | Msa1161680 | 0.836438 | 9.355638e-57 | -8.615850e-47 |
Msa0230740 | Msa1161680 | 0.818034 | 2.418960e-52 | -8.615850e-47 |
Msa0369790 | Msa1161680 | 0.800390 | 1.473818e-48 | -8.615850e-47 |
Msa0380620 | Msa1161680 | 0.830510 | 2.819999e-55 | -8.615850e-47 |
Msa0380670 | Msa1161680 | 0.803765 | 2.982503e-49 | -8.615850e-47 |
Msa0390970 | Msa1161680 | 0.808097 | 3.662184e-50 | -8.615850e-47 |
Msa0419700 | Msa1161680 | 0.834602 | 2.725750e-56 | -8.615850e-47 |
Msa0430260 | Msa1161680 | 0.835426 | 1.689880e-56 | -8.615850e-47 |
Msa0430300 | Msa1161680 | 0.819392 | 1.189600e-52 | -8.615850e-47 |
Msa0472950 | Msa1161680 | 0.821619 | 3.667715e-53 | -8.615850e-47 |
Msa0981320 | Msa1161680 | 0.821143 | 4.721414e-53 | -8.615850e-47 |
Msa1018690 | Msa1161680 | 0.804377 | 2.224089e-49 | -8.615850e-47 |
Msa1019430 | Msa1161680 | 0.817569 | 3.080701e-52 | -8.615850e-47 |
Msa1019470 | Msa1161680 | 0.823663 | 1.226676e-53 | -8.615850e-47 |
Msa1020480 | Msa1161680 | 0.809334 | 1.991603e-50 | -8.615850e-47 |
Msa1020510 | Msa1161680 | 0.803697 | 3.080845e-49 | -8.615850e-47 |
Msa1028100 | Msa1161680 | 0.823197 | 1.576460e-53 | -8.615850e-47 |
Msa1042160 | Msa1161680 | 0.834497 | 2.895933e-56 | -8.615850e-47 |
Msa1042190 | Msa1161680 | 0.835765 | 1.386725e-56 | -8.615850e-47 |
Msa1045140 | Msa1161680 | 0.825916 | 3.609813e-54 | -8.615850e-47 |
Msa1081390 | Msa1161680 | 0.821429 | 4.057444e-53 | -8.615850e-47 |
Msa1084960 | Msa1161680 | 0.811816 | 5.793715e-51 | -8.615850e-47 |
Msa0255090 | Msa1161680 | 0.801456 | 8.929046e-49 | -8.615850e-47 |
Msa0267110 | Msa1161680 | 0.811878 | 5.616131e-51 | -8.615850e-47 |
Msa0275820 | Msa1161680 | 0.801482 | 8.818348e-49 | -8.615850e-47 |
Msa0287740 | Msa1161680 | 0.805777 | 1.132966e-49 | -8.615850e-47 |
Msa0292330 | Msa1161680 | 0.806874 | 6.656020e-50 | -8.615850e-47 |
Msa0292400 | Msa1161680 | 0.806516 | 7.921010e-50 | -8.615850e-47 |
Msa0298470 | Msa1161680 | 0.828202 | 1.024640e-54 | -8.615850e-47 |
Msa0339500 | Msa1161680 | 0.817937 | 2.544478e-52 | -8.615850e-47 |
Msa0340500 | Msa1161680 | 0.825768 | 3.913995e-54 | -8.615850e-47 |
Msa1111090 | Msa1161680 | 0.808683 | 2.745258e-50 | -8.615850e-47 |
Msa1116220 | Msa1161680 | 0.826574 | 2.517533e-54 | -8.615850e-47 |
Msa1117920 | Msa1161680 | 0.987443 | 2.814260e-170 | -8.615850e-47 |
Msa1132840 | Msa1161680 | 0.846553 | 2.021008e-59 | -8.615850e-47 |
Msa1140210 | Msa1161680 | 0.832576 | 8.735230e-56 | -8.615850e-47 |
Msa1155830 | Msa1161680 | 0.802585 | 5.231107e-49 | -8.615850e-47 |
Msa1160920 | Msa1161680 | 0.807347 | 5.283389e-50 | -8.615850e-47 |
Msa1161680 | Msa1167470 | 0.828518 | 8.600902e-55 | -8.615850e-47 |
Msa1161680 | Msa1186020 | 0.836935 | 6.990031e-57 | -8.615850e-47 |
Msa1161680 | Msa1215870 | 0.818752 | 1.663282e-52 | -8.615850e-47 |
Msa1161680 | Msa1223470 | 0.824471 | 7.927159e-54 | -8.615850e-47 |
Msa1161680 | Msa1224930 | 0.827230 | 1.755205e-54 | -8.615850e-47 |
Msa1161680 | Msa1226520 | 0.822555 | 2.225507e-53 | -8.615850e-47 |
Msa1161680 | Msa1240770 | 0.820293 | 7.404749e-53 | -8.615850e-47 |
Msa1161680 | Msa1263490 | 0.803663 | 3.131488e-49 | -8.615850e-47 |
Msa1161680 | Msa1282260 | 0.814712 | 1.339963e-51 | -8.615850e-47 |
Msa1161680 | Msa1321340 | 0.830075 | 3.601177e-55 | -8.615850e-47 |
Msa1161680 | Msa1343180 | 0.832906 | 7.234714e-56 | -8.615850e-47 |
Msa1161680 | Msa1359690 | 0.837468 | 5.107383e-57 | -8.615850e-47 |
Msa1161680 | Msa1372230 | 0.813471 | 2.517683e-51 | -8.615850e-47 |
Msa1161680 | Msa1387620 | 0.801191 | 1.011594e-48 | -8.615850e-47 |
Msa1161680 | Msa1390440 | 0.802339 | 5.879392e-49 | -8.615850e-47 |
Msa1161680 | Msa1395190 | 0.807379 | 5.202612e-50 | -8.615850e-47 |
Msa1161680 | Msa1396030 | 0.867517 | 1.291066e-65 | -8.615850e-47 |
Msa1161680 | Msa1397400 | 0.805547 | 1.266683e-49 | -8.615850e-47 |
Msa1161680 | Msa1437930 | 0.840548 | 8.136962e-58 | -8.615850e-47 |
Msa1161680 | Msa1440960 | 0.825818 | 3.808464e-54 | -8.615850e-47 |
Msa1161680 | Msa1449480 | 0.800649 | 1.305591e-48 | -8.615850e-47 |
Msa1161680 | Msa1452140 | 0.806667 | 7.359695e-50 | -8.615850e-47 |
Msa1161680 | Msa1454140 | 0.814740 | 1.321042e-51 | -8.615850e-47 |
Msa1161680 | Msa1465440 | 0.841542 | 4.461253e-58 | -8.615850e-47 |
Msa0500380 | Msa1161680 | 0.808511 | 2.988073e-50 | -8.615850e-47 |
Msa0511750 | Msa1161680 | 0.816556 | 5.204251e-52 | -8.615850e-47 |
Msa0528570 | Msa1161680 | 0.811317 | 7.438519e-51 | -8.615850e-47 |
Msa0530780 | Msa1161680 | 0.835109 | 2.031120e-56 | -8.615850e-47 |
Msa0543660 | Msa1161680 | 0.804139 | 2.493566e-49 | -8.615850e-47 |
Msa0548470 | Msa1161680 | 0.849968 | 2.299684e-60 | -8.615850e-47 |
Msa0557460 | Msa1161680 | 0.837427 | 5.231860e-57 | -8.615850e-47 |
Msa0567170 | Msa1161680 | 0.808688 | 2.739395e-50 | -8.615850e-47 |
Msa0580370 | Msa1161680 | 0.846249 | 2.445178e-59 | -8.615850e-47 |
Msa0584420 | Msa1161680 | 0.814329 | 1.628141e-51 | -8.615850e-47 |
Msa0587620 | Msa1161680 | 0.806442 | 8.208631e-50 | -8.615850e-47 |
Msa0597790 | Msa1161680 | 0.804129 | 2.505614e-49 | -8.615850e-47 |
Msa0859290 | Msa1161680 | 0.810771 | 9.768553e-51 | -8.615850e-47 |
Msa0895000 | Msa1161680 | 0.801150 | 1.031105e-48 | -8.615850e-47 |
Msa0945110 | Msa1161680 | 0.815316 | 9.838900e-52 | -8.615850e-47 |
Msa0967870 | Msa1161680 | 0.806722 | 7.164871e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1161680 | MtrunA17_Chr7g0254901 | 95.252 | 337 | 16 | 0 | 1 | 337 | 1 | 337 | 0.0 | 607 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1161680 | AT3G56810.1 | 28.340 | 247 | 133 | 5 | 133 | 337 | 88 | 332 | 1.61e-15 | 76.6 |
Find 92 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGAGATTGTTAGAGAATT+AGG | 0.198743 | 7_4:+51852106 | Msa1161680:CDS |
GAAGCAGAGTCTTCTCTTAC+AGG | 0.271350 | 7_4:-51852155 | None:intergenic |
TGGCGACCGGAGTGACAATT+TGG | 0.295248 | 7_4:-51848534 | None:intergenic |
TAGACAAATACACAAGTATA+AGG | 0.307460 | 7_4:-51852248 | None:intergenic |
TCTCTTATGAAAGTGAGTTT+TGG | 0.316516 | 7_4:-51847782 | None:intergenic |
AATAGAGAGCTTGGAAGAAT+AGG | 0.342378 | 7_4:+51852046 | Msa1161680:CDS |
AAGAATAGGATTAGCTTTGC+AGG | 0.354347 | 7_4:+51852060 | Msa1161680:CDS |
CTGTTGATTTCTTCCTCTCC+TGG | 0.358296 | 7_4:-51851884 | None:intergenic |
GACGTCGACGGAACGAGTTC+AGG | 0.389376 | 7_4:-51848396 | None:intergenic |
AAGACAATTGGCTGCATGTC+CGG | 0.397778 | 7_4:+51847881 | Msa1161680:CDS |
CACCGCCGTTTCCTTACCTT+CGG | 0.406699 | 7_4:+51847941 | Msa1161680:CDS |
CAAATTACATTGGATTTAGC+TGG | 0.408644 | 7_4:+51852272 | Msa1161680:three_prime_UTR |
AAGGAAACGGCGGTGGCGAC+GGG | 0.421061 | 7_4:-51847933 | None:intergenic |
AAAATTCACGTCAAGACAAT+TGG | 0.426627 | 7_4:+51847869 | Msa1161680:CDS |
TCCGAGGAGTCCGACTTTAC+CGG | 0.432538 | 7_4:+51848170 | Msa1161680:CDS |
TCCGTCGACGTCGCCGGCGG+TGG | 0.446605 | 7_4:+51848407 | Msa1161680:CDS |
CGGTGTCGCCGTCGTCTTCA+CGG | 0.447900 | 7_4:+51847828 | Msa1161680:CDS |
ATATTCTCCGATGACTTCCT+TGG | 0.450568 | 7_4:-51848213 | None:intergenic |
AGTGTGTAGGGATGTTGCTT+GGG | 0.459394 | 7_4:+51852018 | Msa1161680:CDS |
CAAATTAGCGGTGGCGGTGA+CGG | 0.471037 | 7_4:-51848070 | None:intergenic |
TAAGGAAACGGCGGTGGCGA+CGG | 0.473448 | 7_4:-51847934 | None:intergenic |
CTTTGCAGGATTGTATATGC+AGG | 0.473468 | 7_4:+51852074 | Msa1161680:CDS |
AAGTGTAGATGAAGTGTGTA+GGG | 0.475361 | 7_4:+51852006 | Msa1161680:CDS |
AACGAAACGAACCGAAGGTA+AGG | 0.480610 | 7_4:-51847952 | None:intergenic |
CTCTGCTTCTGAACTATACA+TGG | 0.482592 | 7_4:+51852169 | Msa1161680:exon |
ACACAGGACTCGGCTGTTGT+TGG | 0.485477 | 7_4:-51848476 | None:intergenic |
GAAGTGTAGATGAAGTGTGT+AGG | 0.487123 | 7_4:+51852005 | Msa1161680:CDS |
GAGAAGAGACAGAAGCTGCT+TGG | 0.490693 | 7_4:+51848309 | Msa1161680:CDS |
AGACAAATACACAAGTATAA+GGG | 0.494714 | 7_4:-51852247 | None:intergenic |
AGTAGCGAGGCTGATGGGAC+TGG | 0.494740 | 7_4:+51848254 | Msa1161680:CDS |
TGGGGAGAAAATAGAGAGCT+TGG | 0.497438 | 7_4:+51852037 | Msa1161680:CDS |
ACTCGTTCCGTCGACGTCGC+CGG | 0.499621 | 7_4:+51848401 | Msa1161680:CDS |
AAGTGTGTAGGGATGTTGCT+TGG | 0.504474 | 7_4:+51852017 | Msa1161680:CDS |
GTCTTCACCGGAGTCAGTTG+TGG | 0.509279 | 7_4:+51848287 | Msa1161680:CDS |
ATGAAGATCGTTCAGTTATG+TGG | 0.515586 | 7_4:+51851963 | Msa1161680:CDS |
CTCTTCTCCACAACTGACTC+CGG | 0.518044 | 7_4:-51848294 | None:intergenic |
CTTCTCTTACAGGACTCAAA+TGG | 0.520799 | 7_4:-51852145 | None:intergenic |
GGAAATGAGGTGGAGAATGC+CGG | 0.524845 | 7_4:-51847900 | None:intergenic |
GCCGGCGGTGGTTAAGCATA+CGG | 0.526954 | 7_4:+51848419 | Msa1161680:CDS |
GCCGGTAAAGTCGGACTCCT+CGG | 0.530010 | 7_4:-51848171 | None:intergenic |
GCGTTAGTAGCGAGGCTGAT+GGG | 0.534834 | 7_4:+51848249 | Msa1161680:CDS |
TGGTGGCAAATTAGCGGTGG+CGG | 0.535065 | 7_4:-51848076 | None:intergenic |
TTCAGTTATGTGGAGTAGCA+AGG | 0.537258 | 7_4:+51851973 | Msa1161680:CDS |
AGATTCGCCGTTCGAGTCCA+AGG | 0.544649 | 7_4:+51848196 | Msa1161680:CDS |
AATTATCACGCGAGGTTCCG+AGG | 0.549305 | 7_4:+51848154 | Msa1161680:CDS |
TCGAAGACTTACAATGTGAA+TGG | 0.555380 | 7_4:-51848554 | None:intergenic |
TGATAATTTCGAATTTCGTA+CGG | 0.556195 | 7_4:-51848139 | None:intergenic |
CTCGAACGGCGAATCTCCGC+CGG | 0.556248 | 7_4:-51848189 | None:intergenic |
ACAACTGACTCCGGTGAAGA+CGG | 0.558552 | 7_4:-51848285 | None:intergenic |
GGAATCGCTTCCGTCTTCAC+CGG | 0.560395 | 7_4:+51848275 | Msa1161680:CDS |
ATTTGTCTAACAAATTACAT+TGG | 0.560698 | 7_4:+51852262 | Msa1161680:three_prime_UTR |
CAGCAGTTACTGAAGAAGCC+AGG | 0.563875 | 7_4:+51851866 | Msa1161680:CDS |
TTTGCAGGATTGTATATGCA+GGG | 0.564322 | 7_4:+51852075 | Msa1161680:CDS |
CTCAGTCCAAATTGTCACTC+CGG | 0.564508 | 7_4:+51848528 | Msa1161680:CDS |
CGAAGGTAAGGAAACGGCGG+TGG | 0.570537 | 7_4:-51847940 | None:intergenic |
GTGAAGTGTTCGGTGGTTAA+CGG | 0.571904 | 7_4:+51848450 | Msa1161680:CDS |
ACCGTATGCTTAACCACCGC+CGG | 0.573875 | 7_4:-51848420 | None:intergenic |
CGAATCTCCGCCGGTAAAGT+CGG | 0.575052 | 7_4:-51848180 | None:intergenic |
ATTAGCGGTGGCGGTGACGG+TGG | 0.575627 | 7_4:-51848067 | None:intergenic |
ACCACCGCCGGCGACGTCGA+CGG | 0.576349 | 7_4:-51848408 | None:intergenic |
CGAGAGAATGACAAACGAGT+TGG | 0.576947 | 7_4:+51851922 | Msa1161680:CDS |
TGGTGTAATAAAGAGTATAA+CGG | 0.579233 | 7_4:-51847752 | None:intergenic |
GTGGCGACGGGAATGAGAAG+TGG | 0.589471 | 7_4:-51847921 | None:intergenic |
TTCTGGTGGCAAATTAGCGG+TGG | 0.590543 | 7_4:-51848079 | None:intergenic |
GGGAATGAGAAGTGGAAATG+AGG | 0.592567 | 7_4:-51847913 | None:intergenic |
GAGATGCGACGAGGATCTCA+AGG | 0.595528 | 7_4:+51848341 | Msa1161680:CDS |
GGTTTGTGAGGTGAAGTGTT+CGG | 0.599032 | 7_4:+51848440 | Msa1161680:CDS |
AATGAGAAGTGGAAATGAGG+TGG | 0.606615 | 7_4:-51847910 | None:intergenic |
ACGAACCGAAGGTAAGGAAA+CGG | 0.606713 | 7_4:-51847946 | None:intergenic |
ATCAGCCTCGCTACTAACGC+TGG | 0.612829 | 7_4:-51848246 | None:intergenic |
TCAAGAACAGACACAGGACT+CGG | 0.613130 | 7_4:-51848486 | None:intergenic |
TCAGTTATGTGGAGTAGCAA+GGG | 0.613803 | 7_4:+51851974 | Msa1161680:CDS |
TTCGAGTCCAAGGAAGTCAT+CGG | 0.619932 | 7_4:+51848206 | Msa1161680:CDS |
CTTACAATGTGAATGGCGAC+CGG | 0.622655 | 7_4:-51848547 | None:intergenic |
AGCGTTAGTAGCGAGGCTGA+TGG | 0.630450 | 7_4:+51848248 | Msa1161680:CDS |
AAACACCAGCGTTAGTAGCG+AGG | 0.630494 | 7_4:+51848241 | Msa1161680:CDS |
GGTTAAGCATACGGTTTGTG+AGG | 0.632063 | 7_4:+51848428 | Msa1161680:CDS |
CGTTCCGTCGACGTCGCCGG+CGG | 0.638784 | 7_4:+51848404 | Msa1161680:CDS |
GTGTGTAGGGATGTTGCTTG+GGG | 0.646863 | 7_4:+51852019 | Msa1161680:CDS |
GTTACTGAAGAAGCCAGGAG+AGG | 0.659127 | 7_4:+51851871 | Msa1161680:CDS |
TTGTGAGGTGAAGTGTTCGG+TGG | 0.659789 | 7_4:+51848443 | Msa1161680:CDS |
AAATTCGAAATTATCACGCG+AGG | 0.662168 | 7_4:+51848146 | Msa1161680:CDS |
GTTTCTCGCCGTGAAGACGA+CGG | 0.662502 | 7_4:-51847836 | None:intergenic |
ATGACTTCCTTGGACTCGAA+CGG | 0.668743 | 7_4:-51848203 | None:intergenic |
AAGTCGTCAAGAACAGACAC+AGG | 0.683064 | 7_4:-51848492 | None:intergenic |
TTCACGGCGAGAAACGACGC+CGG | 0.686409 | 7_4:+51847844 | Msa1161680:CDS |
GAGTGACAATTTGGACTGAG+TGG | 0.688078 | 7_4:-51848525 | None:intergenic |
GAGGAGTCCGACTTTACCGG+CGG | 0.703444 | 7_4:+51848173 | Msa1161680:CDS |
AGAAAATCATAGATTCAGTG+AGG | 0.716140 | 7_4:+51848370 | Msa1161680:CDS |
AGCGTTGCAGAGATGCGACG+AGG | 0.722914 | 7_4:+51848332 | Msa1161680:CDS |
AACCGAAGGTAAGGAAACGG+CGG | 0.755169 | 7_4:-51847943 | None:intergenic |
AATGAAGAGACAAAGCAGCG+CGG | 0.779162 | 7_4:+51847808 | Msa1161680:exon |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAGAAAAAAGAAAAA+GGG | + | chr7_4:51850007-51850026 | Msa1161680:intron | 10.0% |
!! | AAGAAAAATGTATAAATAAA+GGG | - | chr7_4:51850201-51850220 | None:intergenic | 10.0% |
!! | TAAGAAAAATGTATAAATAA+AGG | - | chr7_4:51850202-51850221 | None:intergenic | 10.0% |
!! | TAATATAAACTAATAAATCA+TGG | + | chr7_4:51850509-51850528 | Msa1161680:intron | 10.0% |
!!! | TTTTACTTAAATAAAAGTAA+TGG | - | chr7_4:51850947-51850966 | None:intergenic | 10.0% |
!!! | TTTGTGTTTTTTTTTTTATT+TGG | + | chr7_4:51851149-51851168 | Msa1161680:intron | 10.0% |
!!! | ATTCAATCATTCAATATTTT+AGG | - | chr7_4:51848746-51848765 | None:intergenic | 15.0% |
!! | AATTCAAAAAAGAAAAATAC+TGG | - | chr7_4:51849080-51849099 | None:intergenic | 15.0% |
!! | ATTAATCCAAAACATAAAAA+GGG | - | chr7_4:51849160-51849179 | None:intergenic | 15.0% |
!! | AATTAATCCAAAACATAAAA+AGG | - | chr7_4:51849161-51849180 | None:intergenic | 15.0% |
!!! | TTGTGTATATTTTAAATGTT+GGG | - | chr7_4:51849381-51849400 | None:intergenic | 15.0% |
!!! | ATTGTGTATATTTTAAATGT+TGG | - | chr7_4:51849382-51849401 | None:intergenic | 15.0% |
!!! | AGAAGTTATGATTTAAAATT+TGG | - | chr7_4:51849581-51849600 | None:intergenic | 15.0% |
!! | AAATTAATCACTGTTAAATT+AGG | - | chr7_4:51849678-51849697 | None:intergenic | 15.0% |
!! | AAATTAATCATAGTTGAATT+AGG | - | chr7_4:51849745-51849764 | None:intergenic | 15.0% |
!!! | TTTTTGTAGTAATAATAGTT+GGG | - | chr7_4:51849774-51849793 | None:intergenic | 15.0% |
!!! | ATTTTTGTAGTAATAATAGT+TGG | - | chr7_4:51849775-51849794 | None:intergenic | 15.0% |
!! | AAATCAATTATACATTCAAT+TGG | - | chr7_4:51849860-51849879 | None:intergenic | 15.0% |
!! | TGTTAATAAAATTGAATAGA+CGG | - | chr7_4:51849960-51849979 | None:intergenic | 15.0% |
!! | CAAAAAAAGAAAAAAGAAAA+AGG | + | chr7_4:51850006-51850025 | Msa1161680:intron | 15.0% |
!!! | TTTTTTTTTAGAAAATGAGT+CGG | - | chr7_4:51850063-51850082 | None:intergenic | 15.0% |
!! | AGAAAAATGTATAAATAAAG+GGG | - | chr7_4:51850200-51850219 | None:intergenic | 15.0% |
!! | AAAATTGTGTCAATTAAATT+GGG | + | chr7_4:51850237-51850256 | Msa1161680:intron | 15.0% |
!!! | AGTTTATATTATTATCGTTT+TGG | - | chr7_4:51850500-51850519 | None:intergenic | 15.0% |
!! | GAGAAAAAATTTATAATGTA+GGG | + | chr7_4:51851096-51851115 | Msa1161680:intron | 15.0% |
!! | TTAATTATAAGAGAATCAAT+TGG | + | chr7_4:51851531-51851550 | Msa1161680:intron | 15.0% |
!! | TAATTATAAGAGAATCAATT+GGG | + | chr7_4:51851532-51851551 | Msa1161680:intron | 15.0% |
!!! | TATTTTATGTTTTACTAGCA+AGG | + | chr7_4:51848852-51848871 | Msa1161680:intron | 20.0% |
!!! | ATCGTCTTGTTTTTTTTTTT+TGG | + | chr7_4:51849033-51849052 | Msa1161680:intron | 20.0% |
!!! | ATTGCTTCCTAATTTTATTT+TGG | + | chr7_4:51849178-51849197 | Msa1161680:intron | 20.0% |
!! | ATGTACTCCAAAATAAAATT+AGG | - | chr7_4:51849188-51849207 | None:intergenic | 20.0% |
!! | ACTAAAATGCATGTAATTAT+CGG | - | chr7_4:51849294-51849313 | None:intergenic | 20.0% |
!!! | TCCATTTTTCCATTTTTTTT+AGG | + | chr7_4:51849552-51849571 | Msa1161680:intron | 20.0% |
!! | TCCTAAAAAAAATGGAAAAA+TGG | - | chr7_4:51849556-51849575 | None:intergenic | 20.0% |
!!! | CACAGACAATTATAAAATTT+TGG | + | chr7_4:51849884-51849903 | Msa1161680:intron | 20.0% |
!! | TATTAACATATCATGATTAG+TGG | + | chr7_4:51849972-51849991 | Msa1161680:intron | 20.0% |
!! | AAAGTGGAATATATTGTATT+GGG | - | chr7_4:51850177-51850196 | None:intergenic | 20.0% |
!! | CAAAATTGTGTCAATTAAAT+TGG | + | chr7_4:51850236-51850255 | Msa1161680:intron | 20.0% |
!! | TTTCTTATAGTACAAAATAG+TGG | - | chr7_4:51850558-51850577 | None:intergenic | 20.0% |
!!! | ACTATTTTGTACTATAAGAA+AGG | + | chr7_4:51850557-51850576 | Msa1161680:intron | 20.0% |
!! | TCTCTTATTGTGTTTATATA+AGG | + | chr7_4:51850862-51850881 | Msa1161680:intron | 20.0% |
!! | GGAGAAAAAATTTATAATGT+AGG | + | chr7_4:51851095-51851114 | Msa1161680:intron | 20.0% |
!! | AAAATTTATAATGTAGGGAA+AGG | + | chr7_4:51851101-51851120 | Msa1161680:intron | 20.0% |
!! | AAATTTATAATGTAGGGAAA+GGG | + | chr7_4:51851102-51851121 | Msa1161680:intron | 20.0% |
!!! | GGTAGTGTATATATATTTTT+TGG | + | chr7_4:51851170-51851189 | Msa1161680:intron | 20.0% |
!!! | GTTTTAACATTCAAATTTCT+AGG | - | chr7_4:51851647-51851666 | None:intergenic | 20.0% |
!! | AAACAAATGTCTATATAACA+TGG | + | chr7_4:51851693-51851712 | Msa1161680:intron | 20.0% |
!! | AAAATAAAACTGATGTCTAA+TGG | + | chr7_4:51851806-51851825 | Msa1161680:intron | 20.0% |
!! | ATTTGTCTAACAAATTACAT+TGG | + | chr7_4:51852262-51852281 | Msa1161680:three_prime_UTR | 20.0% |
! | TGATAATTTCGAATTTCGTA+CGG | - | chr7_4:51848142-51848161 | None:intergenic | 25.0% |
! | AGTGTTTATGTTTGATATCA+CGG | + | chr7_4:51848645-51848664 | Msa1161680:intron | 25.0% |
! | AAATCATGCAATTTACACAT+TGG | - | chr7_4:51848785-51848804 | None:intergenic | 25.0% |
!!! | TGATTTTAACATACTTTGCA+TGG | + | chr7_4:51848799-51848818 | Msa1161680:intron | 25.0% |
! | GATGATAGATCATTAGAAAA+AGG | + | chr7_4:51848946-51848965 | Msa1161680:intron | 25.0% |
! | GATGAACTGATTAACTATTT+AGG | + | chr7_4:51849002-51849021 | Msa1161680:intron | 25.0% |
! | TCAAAAAAGAAAAATACTGG+TGG | - | chr7_4:51849077-51849096 | None:intergenic | 25.0% |
!!! | TGAATTTGCTTTTAAGAGTT+AGG | + | chr7_4:51849094-51849113 | Msa1161680:intron | 25.0% |
!! | TAAACTCCCTTTTTATGTTT+TGG | + | chr7_4:51849151-51849170 | Msa1161680:intron | 25.0% |
! | GGAGTACATAATTGAATAAA+TGG | + | chr7_4:51849199-51849218 | Msa1161680:intron | 25.0% |
!!! | AGTTGTTAGATTAAGTTGAA+TGG | + | chr7_4:51849311-51849330 | Msa1161680:intron | 25.0% |
!!! | GATTGTAAATGCTTTTTCAT+AGG | - | chr7_4:51849429-51849448 | None:intergenic | 25.0% |
! | ATGTATATGAATTTCCTTAC+AGG | + | chr7_4:51849488-51849507 | Msa1161680:intron | 25.0% |
! | AAAAATGGAAAAATGGATAG+AGG | - | chr7_4:51849549-51849568 | None:intergenic | 25.0% |
! | ATTTGGCATCCTAAAAAAAA+TGG | - | chr7_4:51849564-51849583 | None:intergenic | 25.0% |
! | GTTAATCACATGTAAAATTG+TGG | + | chr7_4:51849829-51849848 | Msa1161680:intron | 25.0% |
! | CAATTCAAGGTCAAAATTTA+TGG | - | chr7_4:51849931-51849950 | None:intergenic | 25.0% |
!!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr7_4:51850089-51850108 | None:intergenic | 25.0% |
!! | TTGAAATGAGTCAGTTATTT+TGG | - | chr7_4:51850090-51850109 | None:intergenic | 25.0% |
! | GAAAGTGGAATATATTGTAT+TGG | - | chr7_4:51850178-51850197 | None:intergenic | 25.0% |
! | ACTAATAAATCATGGTACTT+TGG | + | chr7_4:51850517-51850536 | Msa1161680:intron | 25.0% |
! | AAAGATGTTTCAAAAGGAAA+AGG | + | chr7_4:51850623-51850642 | Msa1161680:intron | 25.0% |
! | GAAACAGTTTATCATTATTG+AGG | + | chr7_4:51850884-51850903 | Msa1161680:intron | 25.0% |
! | TCAATACCAAAATTAGTTGT+TGG | + | chr7_4:51850997-51851016 | Msa1161680:intron | 25.0% |
! | CAATACCAAAATTAGTTGTT+GGG | + | chr7_4:51850998-51851017 | Msa1161680:intron | 25.0% |
! | ATATTCAACCTAAGTCTATT+TGG | + | chr7_4:51851063-51851082 | Msa1161680:intron | 25.0% |
!!! | ATAGCTTTGAACCATATTTT+TGG | - | chr7_4:51851314-51851333 | None:intergenic | 25.0% |
! | AAAAATATGGTTCAAAGCTA+TGG | + | chr7_4:51851313-51851332 | Msa1161680:intron | 25.0% |
! | TTCAGTCAAAATTTGAACTT+AGG | - | chr7_4:51851562-51851581 | None:intergenic | 25.0% |
! | AATTGAGCTCTTAATTGTTA+GGG | + | chr7_4:51851610-51851629 | Msa1161680:intron | 25.0% |
!! | CATTCAAATTTCTAGGAAAA+TGG | - | chr7_4:51851640-51851659 | None:intergenic | 25.0% |
! | AGACAAATACACAAGTATAA+GGG | - | chr7_4:51852250-51852269 | None:intergenic | 25.0% |
! | TAGACAAATACACAAGTATA+AGG | - | chr7_4:51852251-51852270 | None:intergenic | 25.0% |
! | TCTCTTATGAAAGTGAGTTT+TGG | - | chr7_4:51847785-51847804 | None:intergenic | 30.0% |
AAAATTCACGTCAAGACAAT+TGG | + | chr7_4:51847869-51847888 | Msa1161680:CDS | 30.0% | |
CCTGAAAATGAGAACAAAAA+AGG | - | chr7_4:51848021-51848040 | None:intergenic | 30.0% | |
!!! | CCTTTTTTGTTCTCATTTTC+AGG | + | chr7_4:51848018-51848037 | Msa1161680:intron | 30.0% |
!!! | TTCTTCTCATTCGTTTTTTC+TGG | - | chr7_4:51848099-51848118 | None:intergenic | 30.0% |
AGAAAATCATAGATTCAGTG+AGG | + | chr7_4:51848370-51848389 | Msa1161680:CDS | 30.0% | |
! | CCGTGATTTTGCAAAAATTA+GGG | - | chr7_4:51848694-51848713 | None:intergenic | 30.0% |
! | CCCTAATTTTTGCAAAATCA+CGG | + | chr7_4:51848691-51848710 | Msa1161680:intron | 30.0% |
! | ACCGTGATTTTGCAAAAATT+AGG | - | chr7_4:51848695-51848714 | None:intergenic | 30.0% |
! | TAATTTTTGCAAAATCACGG+TGG | + | chr7_4:51848694-51848713 | Msa1161680:intron | 30.0% |
ATCATAGTTGAATTAGGTTC+TGG | - | chr7_4:51849739-51849758 | None:intergenic | 30.0% | |
TAGTAATAATAGTTGGGAAG+AGG | - | chr7_4:51849768-51849787 | None:intergenic | 30.0% | |
! | GTGATTAACCAGATGTTTTA+GGG | - | chr7_4:51849818-51849837 | None:intergenic | 30.0% |
! | TGTGATTAACCAGATGTTTT+AGG | - | chr7_4:51849819-51849838 | None:intergenic | 30.0% |
TAGACGGTTAATTCAATTCA+AGG | - | chr7_4:51849944-51849963 | None:intergenic | 30.0% | |
TGTATAAATAAAGGGGAAAG+TGG | - | chr7_4:51850193-51850212 | None:intergenic | 30.0% | |
AATTCCGGTTCTATAGTATA+GGG | - | chr7_4:51850287-51850306 | None:intergenic | 30.0% | |
TAATTCCGGTTCTATAGTAT+AGG | - | chr7_4:51850288-51850307 | None:intergenic | 30.0% | |
! | AGTTAGCTTCTCTTTAATTC+CGG | - | chr7_4:51850302-51850321 | None:intergenic | 30.0% |
AATAAATCATGGTACTTTGG+TGG | + | chr7_4:51850520-51850539 | Msa1161680:intron | 30.0% | |
CAGTCAAAAGATGTTTCAAA+AGG | + | chr7_4:51850617-51850636 | Msa1161680:intron | 30.0% | |
ATGTTTCAAAAGGAAAAGGA+GGG | + | chr7_4:51850627-51850646 | Msa1161680:intron | 30.0% | |
! | AATTTTCTGTACACCATTGT+TGG | - | chr7_4:51851037-51851056 | None:intergenic | 30.0% |
! | TTTGTGTTTAGTTCAACTAG+AGG | + | chr7_4:51851204-51851223 | Msa1161680:intron | 30.0% |
! | TTTTCACTCGAGCTAAAATT+AGG | + | chr7_4:51851268-51851287 | Msa1161680:intron | 30.0% |
!!! | CTTTGAACCATATTTTTGGT+CGG | - | chr7_4:51851310-51851329 | None:intergenic | 30.0% |
!!! | GTTCAAATTTTGACTGAAGT+TGG | + | chr7_4:51851564-51851583 | Msa1161680:intron | 30.0% |
CAATTGAGCTCTTAATTGTT+AGG | + | chr7_4:51851609-51851628 | Msa1161680:intron | 30.0% | |
! | AAAGTGTTATAAGCTAGAAG+TGG | - | chr7_4:51851771-51851790 | None:intergenic | 30.0% |
GAAGAGATTGTTAGAGAATT+AGG | + | chr7_4:51852106-51852125 | Msa1161680:CDS | 30.0% | |
CAAATTACATTGGATTTAGC+TGG | + | chr7_4:51852272-51852291 | Msa1161680:three_prime_UTR | 30.0% | |
!! | CTTATGAAAGTGAGTTTTGG+TGG | - | chr7_4:51847782-51847801 | None:intergenic | 35.0% |
!! | TTTTTCTGGTGGCAAATTAG+CGG | - | chr7_4:51848085-51848104 | None:intergenic | 35.0% |
!!! | TTCTCATTCGTTTTTTCTGG+TGG | - | chr7_4:51848096-51848115 | None:intergenic | 35.0% |
AAATTCGAAATTATCACGCG+AGG | + | chr7_4:51848146-51848165 | Msa1161680:CDS | 35.0% | |
TCGAAGACTTACAATGTGAA+TGG | - | chr7_4:51848557-51848576 | None:intergenic | 35.0% | |
ACATAAACACTGACGCTAAT+TGG | - | chr7_4:51848636-51848655 | None:intergenic | 35.0% | |
! | AGGAACAGAGTTTACGTTTT+AGG | + | chr7_4:51848872-51848891 | Msa1161680:intron | 35.0% |
! | TGCGAAATGACTAAAAGTGT+GGG | + | chr7_4:51849117-51849136 | Msa1161680:intron | 35.0% |
AAGTTGACATGTACTACTCT+TGG | + | chr7_4:51849257-51849276 | Msa1161680:intron | 35.0% | |
AGTTGACATGTACTACTCTT+GGG | + | chr7_4:51849258-51849277 | Msa1161680:intron | 35.0% | |
AAATCATTGTGTCTCCTGTA+AGG | - | chr7_4:51849505-51849524 | None:intergenic | 35.0% | |
TCTTCTATTCCACAACATCA+TGG | + | chr7_4:51849598-51849617 | Msa1161680:intron | 35.0% | |
AAGATGATTGCATAACCAAC+AGG | - | chr7_4:51849652-51849671 | None:intergenic | 35.0% | |
TTCTGGATGAATGAGCTAAA+GGG | - | chr7_4:51849722-51849741 | None:intergenic | 35.0% | |
!!! | CAGATGTTTTAGGGAAAAAC+GGG | - | chr7_4:51849809-51849828 | None:intergenic | 35.0% |
!!! | CCAGATGTTTTAGGGAAAAA+CGG | - | chr7_4:51849810-51849829 | None:intergenic | 35.0% |
AGAAAATGAGTCGGTTATTC+CGG | - | chr7_4:51850054-51850073 | None:intergenic | 35.0% | |
TGTCAATTAAATTGGGACTG+AGG | + | chr7_4:51850244-51850263 | Msa1161680:intron | 35.0% | |
GTTTCCCTATACTATAGAAC+CGG | + | chr7_4:51850280-51850299 | Msa1161680:intron | 35.0% | |
! | TAACTAATGACCGTTTTGCT+GGG | + | chr7_4:51850317-51850336 | Msa1161680:intron | 35.0% |
ATGTAATGGTATGGTGACAT+TGG | - | chr7_4:51850368-51850387 | None:intergenic | 35.0% | |
CATAATTCATAGCTAGCATG+AGG | - | chr7_4:51850589-51850608 | None:intergenic | 35.0% | |
GATGTTTCAAAAGGAAAAGG+AGG | + | chr7_4:51850626-51850645 | Msa1161680:intron | 35.0% | |
GCAGGTAATAAAGTTCCAAA+GGG | - | chr7_4:51850674-51850693 | None:intergenic | 35.0% | |
! | AAACAAGGCTCTTGTTTGTT+GGG | - | chr7_4:51850768-51850787 | None:intergenic | 35.0% |
TACCAAAATTAGTTGTTGGG+TGG | + | chr7_4:51851001-51851020 | Msa1161680:intron | 35.0% | |
ACCAAAATTAGTTGTTGGGT+GGG | + | chr7_4:51851002-51851021 | Msa1161680:intron | 35.0% | |
! | CCTAAGTCTATTTGGTTCAA+CGG | + | chr7_4:51851071-51851090 | Msa1161680:intron | 35.0% |
TAATGTAGGGAAAGGGAAAA+AGG | + | chr7_4:51851109-51851128 | Msa1161680:intron | 35.0% | |
AATGTAGGGAAAGGGAAAAA+GGG | + | chr7_4:51851110-51851129 | Msa1161680:intron | 35.0% | |
CGAGCTAAAATTAGGTTACA+TGG | + | chr7_4:51851276-51851295 | Msa1161680:intron | 35.0% | |
TTACCTTCCGACCAAAAATA+TGG | + | chr7_4:51851300-51851319 | Msa1161680:intron | 35.0% | |
ATATGGTTCAAAGCTATGGA+TGG | + | chr7_4:51851317-51851336 | Msa1161680:intron | 35.0% | |
CTATGGATGGAATACCATAA+GGG | + | chr7_4:51851330-51851349 | Msa1161680:intron | 35.0% | |
ACTAAGTGATTGAACTCAAG+TGG | + | chr7_4:51851498-51851517 | Msa1161680:intron | 35.0% | |
TGTTATAAGCTAGAAGTGGA+AGG | - | chr7_4:51851767-51851786 | None:intergenic | 35.0% | |
ATGAAGATCGTTCAGTTATG+TGG | + | chr7_4:51851963-51851982 | Msa1161680:CDS | 35.0% | |
AAGTGTAGATGAAGTGTGTA+GGG | + | chr7_4:51852006-51852025 | Msa1161680:CDS | 35.0% | |
AATAGAGAGCTTGGAAGAAT+AGG | + | chr7_4:51852046-51852065 | Msa1161680:CDS | 35.0% | |
!! | AAGAATAGGATTAGCTTTGC+AGG | + | chr7_4:51852060-51852079 | Msa1161680:CDS | 35.0% |
TTTGCAGGATTGTATATGCA+GGG | + | chr7_4:51852075-51852094 | Msa1161680:CDS | 35.0% | |
! | GTCTTGACGTGAATTTTGTC+CGG | - | chr7_4:51847866-51847885 | None:intergenic | 40.0% |
AATGAGAAGTGGAAATGAGG+TGG | - | chr7_4:51847913-51847932 | None:intergenic | 40.0% | |
ATATTCTCCGATGACTTCCT+TGG | - | chr7_4:51848216-51848235 | None:intergenic | 40.0% | |
ACGGTGAGTTTATTGAGATC+AGG | + | chr7_4:51848664-51848683 | Msa1161680:intron | 40.0% | |
TAGGTGCGTGTTTAGTGTTA+AGG | - | chr7_4:51848727-51848746 | None:intergenic | 40.0% | |
GTGCGAAATGACTAAAAGTG+TGG | + | chr7_4:51849116-51849135 | Msa1161680:intron | 40.0% | |
! | GCGAAATGACTAAAAGTGTG+GGG | + | chr7_4:51849118-51849137 | Msa1161680:intron | 40.0% |
! | CGAAATGACTAAAAGTGTGG+GGG | + | chr7_4:51849119-51849138 | Msa1161680:intron | 40.0% |
! | GAAATGACTAAAAGTGTGGG+GGG | + | chr7_4:51849120-51849139 | Msa1161680:intron | 40.0% |
! | AAATGACTAAAAGTGTGGGG+GGG | + | chr7_4:51849121-51849140 | Msa1161680:intron | 40.0% |
CATGTACTACTCTTGGGATT+TGG | + | chr7_4:51849264-51849283 | Msa1161680:intron | 40.0% | |
ATATGATGGCCATGATGTTG+TGG | - | chr7_4:51849610-51849629 | None:intergenic | 40.0% | |
ACATCATGGCCATCATATAG+TGG | + | chr7_4:51849612-51849631 | Msa1161680:intron | 40.0% | |
AGTTGTCTGCCACTATATGA+TGG | - | chr7_4:51849624-51849643 | None:intergenic | 40.0% | |
GCAGACAACTTAATTCCTGT+TGG | + | chr7_4:51849634-51849653 | Msa1161680:intron | 40.0% | |
TCTGGATGAATGAGCTAAAG+GGG | - | chr7_4:51849721-51849740 | None:intergenic | 40.0% | |
! | GTTCTGGATGAATGAGCTAA+AGG | - | chr7_4:51849723-51849742 | None:intergenic | 40.0% |
!! | CCGTTTTTCCCTAAAACATC+TGG | + | chr7_4:51849807-51849826 | Msa1161680:intron | 40.0% |
GAAAATGAGTCGGTTATTCC+GGG | - | chr7_4:51850053-51850072 | None:intergenic | 40.0% | |
! | CTAACTAATGACCGTTTTGC+TGG | + | chr7_4:51850316-51850335 | Msa1161680:intron | 40.0% |
!! | AACCACTTTGGTGCCATTAA+TGG | + | chr7_4:51850340-51850359 | Msa1161680:intron | 40.0% |
TGACTTAGCTTACGTGACAT+TGG | - | chr7_4:51850448-51850467 | None:intergenic | 40.0% | |
AATCATGGTACTTTGGTGGA+TGG | + | chr7_4:51850524-51850543 | Msa1161680:intron | 40.0% | |
AAGAAATACACACCACCCTT+TGG | + | chr7_4:51850656-51850675 | Msa1161680:intron | 40.0% | |
GGTAATAAAGTTCCAAAGGG+TGG | - | chr7_4:51850671-51850690 | None:intergenic | 40.0% | |
GGCAGGTAATAAAGTTCCAA+AGG | - | chr7_4:51850675-51850694 | None:intergenic | 40.0% | |
!!! | ATGCAGAAACGCACTTTTTC+AGG | + | chr7_4:51850702-51850721 | Msa1161680:intron | 40.0% |
!!! | TGCAGAAACGCACTTTTTCA+GGG | + | chr7_4:51850703-51850722 | Msa1161680:intron | 40.0% |
! | CAAACAAGGCTCTTGTTTGT+TGG | - | chr7_4:51850769-51850788 | None:intergenic | 40.0% |
! | ACCCACCCAACAACTAATTT+TGG | - | chr7_4:51851006-51851025 | None:intergenic | 40.0% |
CCGTTGAACCAAATAGACTT+AGG | - | chr7_4:51851074-51851093 | None:intergenic | 40.0% | |
! | AAGTCTATTTGGTTCAACGG+AGG | + | chr7_4:51851074-51851093 | Msa1161680:intron | 40.0% |
! | GTTTAGTTCAACTAGAGGAG+TGG | + | chr7_4:51851209-51851228 | Msa1161680:intron | 40.0% |
!!! | GAACCATATTTTTGGTCGGA+AGG | - | chr7_4:51851306-51851325 | None:intergenic | 40.0% |
GCTATGGATGGAATACCATA+AGG | + | chr7_4:51851329-51851348 | Msa1161680:intron | 40.0% | |
TTCAGTTATGTGGAGTAGCA+AGG | + | chr7_4:51851973-51851992 | Msa1161680:CDS | 40.0% | |
TCAGTTATGTGGAGTAGCAA+GGG | + | chr7_4:51851974-51851993 | Msa1161680:CDS | 40.0% | |
GAAGTGTAGATGAAGTGTGT+AGG | + | chr7_4:51852005-51852024 | Msa1161680:CDS | 40.0% | |
CTTTGCAGGATTGTATATGC+AGG | + | chr7_4:51852074-51852093 | Msa1161680:CDS | 40.0% | |
CTTCTCTTACAGGACTCAAA+TGG | - | chr7_4:51852148-51852167 | None:intergenic | 40.0% | |
CTCTGCTTCTGAACTATACA+TGG | + | chr7_4:51852169-51852188 | Msa1161680:exon | 40.0% | |
!!! | AAGTGAGTTTTGGTGGTGAG+TGG | - | chr7_4:51847775-51847794 | None:intergenic | 45.0% |
AATGAAGAGACAAAGCAGCG+CGG | + | chr7_4:51847808-51847827 | Msa1161680:exon | 45.0% | |
AAGACAATTGGCTGCATGTC+CGG | + | chr7_4:51847881-51847900 | Msa1161680:CDS | 45.0% | |
GGGAATGAGAAGTGGAAATG+AGG | - | chr7_4:51847916-51847935 | None:intergenic | 45.0% | |
ACGAACCGAAGGTAAGGAAA+CGG | - | chr7_4:51847949-51847968 | None:intergenic | 45.0% | |
AACGAAACGAACCGAAGGTA+AGG | - | chr7_4:51847955-51847974 | None:intergenic | 45.0% | |
AACGAAACGAAACGAACCGA+AGG | - | chr7_4:51847960-51847979 | None:intergenic | 45.0% | |
ATGACTTCCTTGGACTCGAA+CGG | - | chr7_4:51848206-51848225 | None:intergenic | 45.0% | |
TTCGAGTCCAAGGAAGTCAT+CGG | + | chr7_4:51848206-51848225 | Msa1161680:CDS | 45.0% | |
GGTTAAGCATACGGTTTGTG+AGG | + | chr7_4:51848428-51848447 | Msa1161680:CDS | 45.0% | |
! | GGTTTGTGAGGTGAAGTGTT+CGG | + | chr7_4:51848440-51848459 | Msa1161680:CDS | 45.0% |
! | GTGAAGTGTTCGGTGGTTAA+CGG | + | chr7_4:51848450-51848469 | Msa1161680:CDS | 45.0% |
TCAAGAACAGACACAGGACT+CGG | - | chr7_4:51848489-51848508 | None:intergenic | 45.0% | |
AAGTCGTCAAGAACAGACAC+AGG | - | chr7_4:51848495-51848514 | None:intergenic | 45.0% | |
GAGTGACAATTTGGACTGAG+TGG | - | chr7_4:51848528-51848547 | None:intergenic | 45.0% | |
CTCAGTCCAAATTGTCACTC+CGG | + | chr7_4:51848528-51848547 | Msa1161680:CDS | 45.0% | |
CTTACAATGTGAATGGCGAC+CGG | - | chr7_4:51848550-51848569 | None:intergenic | 45.0% | |
GCGTGTTTAGTGTTAAGGCA+CGG | - | chr7_4:51848722-51848741 | None:intergenic | 45.0% | |
! | AATGACTAAAAGTGTGGGGG+GGG | + | chr7_4:51849122-51849141 | Msa1161680:intron | 45.0% |
CAAAGTGGTTCCCAGCAAAA+CGG | - | chr7_4:51850330-51850349 | None:intergenic | 45.0% | |
TGCCATTAATGGCACCAAAG+TGG | - | chr7_4:51850345-51850364 | None:intergenic | 45.0% | |
!! | GGTGACATTGGTGCCATTAA+TGG | - | chr7_4:51850356-51850375 | None:intergenic | 45.0% |
! | GTGGTGGAGATGTAATGGTA+TGG | - | chr7_4:51850377-51850396 | None:intergenic | 45.0% |
! | TGTGTGTGGTGGAGATGTAA+TGG | - | chr7_4:51850382-51850401 | None:intergenic | 45.0% |
CACATTCCCACACACATCAA+CGG | + | chr7_4:51850402-51850421 | Msa1161680:intron | 45.0% | |
!! | TACGTGACATTGGTGCCATT+GGG | - | chr7_4:51850438-51850457 | None:intergenic | 45.0% |
!! | TTACGTGACATTGGTGCCAT+TGG | - | chr7_4:51850439-51850458 | None:intergenic | 45.0% |
! | TTTTGGACCAGAGCAAAACG+GGG | - | chr7_4:51850483-51850502 | None:intergenic | 45.0% |
!! | GTTTTGGACCAGAGCAAAAC+GGG | - | chr7_4:51850484-51850503 | None:intergenic | 45.0% |
!! | CGTTTTGGACCAGAGCAAAA+CGG | - | chr7_4:51850485-51850504 | None:intergenic | 45.0% |
! | GTACTTTGGTGGATGGATCT+TGG | + | chr7_4:51850531-51850550 | Msa1161680:intron | 45.0% |
AGTGCGTTTCTGCATGACTA+GGG | - | chr7_4:51850697-51850716 | None:intergenic | 45.0% | |
AAGTGCGTTTCTGCATGACT+AGG | - | chr7_4:51850698-51850717 | None:intergenic | 45.0% | |
GAGAAGACAACGTCTTCATC+AGG | - | chr7_4:51850846-51850865 | None:intergenic | 45.0% | |
GTACACCATTGTTGGTACCA+GGG | - | chr7_4:51851029-51851048 | None:intergenic | 45.0% | |
TGTACACCATTGTTGGTACC+AGG | - | chr7_4:51851030-51851049 | None:intergenic | 45.0% | |
ATACCATAAGGGTTCTCGCA+TGG | + | chr7_4:51851341-51851360 | Msa1161680:intron | 45.0% | |
!! | CTGTTGATTTCTTCCTCTCC+TGG | - | chr7_4:51851887-51851906 | None:intergenic | 45.0% |
CGAGAGAATGACAAACGAGT+TGG | + | chr7_4:51851922-51851941 | Msa1161680:CDS | 45.0% | |
AAGTGTGTAGGGATGTTGCT+TGG | + | chr7_4:51852017-51852036 | Msa1161680:CDS | 45.0% | |
! | AGTGTGTAGGGATGTTGCTT+GGG | + | chr7_4:51852018-51852037 | Msa1161680:CDS | 45.0% |
TGGGGAGAAAATAGAGAGCT+TGG | + | chr7_4:51852037-51852056 | Msa1161680:CDS | 45.0% | |
GAAGCAGAGTCTTCTCTTAC+AGG | - | chr7_4:51852158-51852177 | None:intergenic | 45.0% | |
!! | TATTAAAAATTAAATTAATG+TGG | + | chr7_4:51849234-51849253 | Msa1161680:intron | 5.0% |
GGAAATGAGGTGGAGAATGC+CGG | - | chr7_4:51847903-51847922 | None:intergenic | 50.0% | |
AACCGAAGGTAAGGAAACGG+CGG | - | chr7_4:51847946-51847965 | None:intergenic | 50.0% | |
TTCTGGTGGCAAATTAGCGG+TGG | - | chr7_4:51848082-51848101 | None:intergenic | 50.0% | |
AATTATCACGCGAGGTTCCG+AGG | + | chr7_4:51848154-51848173 | Msa1161680:CDS | 50.0% | |
AAACACCAGCGTTAGTAGCG+AGG | + | chr7_4:51848241-51848260 | Msa1161680:CDS | 50.0% | |
! | ACAACTGACTCCGGTGAAGA+CGG | - | chr7_4:51848288-51848307 | None:intergenic | 50.0% |
! | CTCTTCTCCACAACTGACTC+CGG | - | chr7_4:51848297-51848316 | None:intergenic | 50.0% |
GAGAAGAGACAGAAGCTGCT+TGG | + | chr7_4:51848309-51848328 | Msa1161680:CDS | 50.0% | |
! | TTGTGAGGTGAAGTGTTCGG+TGG | + | chr7_4:51848443-51848462 | Msa1161680:CDS | 50.0% |
ATATGATACTCCCTCCGTCC+CGG | + | chr7_4:51850032-51850051 | Msa1161680:intron | 50.0% | |
ATGAGTCGGTTATTCCGGGA+CGG | - | chr7_4:51850049-51850068 | None:intergenic | 50.0% | |
! | CGTTTTGCTGGGAACCACTT+TGG | + | chr7_4:51850328-51850347 | Msa1161680:intron | 50.0% |
TGTGTGGGAATGTGTGTGTG+TGG | - | chr7_4:51850396-51850415 | None:intergenic | 50.0% | |
TCTTGGCCGTTGATGTGTGT+GGG | - | chr7_4:51850411-51850430 | None:intergenic | 50.0% | |
ATCTTGGCCGTTGATGTGTG+TGG | - | chr7_4:51850412-51850431 | None:intergenic | 50.0% | |
AACGGCCAAGATTTCCCCAA+TGG | + | chr7_4:51850420-51850439 | Msa1161680:intron | 50.0% | |
!! | TGGTGCCATTGGGGAAATCT+TGG | - | chr7_4:51850428-51850447 | None:intergenic | 50.0% |
!! | ACGTGACATTGGTGCCATTG+GGG | - | chr7_4:51850437-51850456 | None:intergenic | 50.0% |
! | GTATTTCCCCCGTTTTGCTC+TGG | + | chr7_4:51850473-51850492 | Msa1161680:intron | 50.0% |
TTTGGACCAGAGCAAAACGG+GGG | - | chr7_4:51850482-51850501 | None:intergenic | 50.0% | |
GTGCGTTTCTGCATGACTAG+GGG | - | chr7_4:51850696-51850715 | None:intergenic | 50.0% | |
! | GCTCTTGTTTGTTGGGAGGA+GGG | - | chr7_4:51850761-51850780 | None:intergenic | 50.0% |
! | CAAGGCTCTTGTTTGTTGGG+AGG | - | chr7_4:51850765-51850784 | None:intergenic | 50.0% |
GCGCGAGCAAGTAACAAACA+AGG | - | chr7_4:51850783-51850802 | None:intergenic | 50.0% | |
! | TGTTTGTTACTTGCTCGCGC+AGG | + | chr7_4:51850783-51850802 | Msa1161680:intron | 50.0% |
CGCAGGTACTTCATTTCTGC+AGG | + | chr7_4:51850800-51850819 | Msa1161680:intron | 50.0% | |
TGCAGGTTAATCCATGCGTG+TGG | + | chr7_4:51850817-51850836 | Msa1161680:intron | 50.0% | |
AGGTTAATCCATGCGTGTGG+TGG | + | chr7_4:51850820-51850839 | Msa1161680:intron | 50.0% | |
CATCCATGCGAGAACCCTTA+TGG | - | chr7_4:51851347-51851366 | None:intergenic | 50.0% | |
CATAAGGGTTCTCGCATGGA+TGG | + | chr7_4:51851345-51851364 | Msa1161680:intron | 50.0% | |
CAGCAGTTACTGAAGAAGCC+AGG | + | chr7_4:51851866-51851885 | Msa1161680:CDS | 50.0% | |
GTTACTGAAGAAGCCAGGAG+AGG | + | chr7_4:51851871-51851890 | Msa1161680:CDS | 50.0% | |
! | GTGTGTAGGGATGTTGCTTG+GGG | + | chr7_4:51852019-51852038 | Msa1161680:CDS | 50.0% |
GTTTCTCGCCGTGAAGACGA+CGG | - | chr7_4:51847839-51847858 | None:intergenic | 55.0% | |
CACCGCCGTTTCCTTACCTT+CGG | + | chr7_4:51847941-51847960 | Msa1161680:CDS | 55.0% | |
! | CAAATTAGCGGTGGCGGTGA+CGG | - | chr7_4:51848073-51848092 | None:intergenic | 55.0% |
TGGTGGCAAATTAGCGGTGG+CGG | - | chr7_4:51848079-51848098 | None:intergenic | 55.0% | |
TCCGAGGAGTCCGACTTTAC+CGG | + | chr7_4:51848170-51848189 | Msa1161680:CDS | 55.0% | |
CGAATCTCCGCCGGTAAAGT+CGG | - | chr7_4:51848183-51848202 | None:intergenic | 55.0% | |
AGATTCGCCGTTCGAGTCCA+AGG | + | chr7_4:51848196-51848215 | Msa1161680:CDS | 55.0% | |
ATCAGCCTCGCTACTAACGC+TGG | - | chr7_4:51848249-51848268 | None:intergenic | 55.0% | |
AGCGTTAGTAGCGAGGCTGA+TGG | + | chr7_4:51848248-51848267 | Msa1161680:CDS | 55.0% | |
GCGTTAGTAGCGAGGCTGAT+GGG | + | chr7_4:51848249-51848268 | Msa1161680:CDS | 55.0% | |
GGAATCGCTTCCGTCTTCAC+CGG | + | chr7_4:51848275-51848294 | Msa1161680:CDS | 55.0% | |
GTCTTCACCGGAGTCAGTTG+TGG | + | chr7_4:51848287-51848306 | Msa1161680:CDS | 55.0% | |
GAGATGCGACGAGGATCTCA+AGG | + | chr7_4:51848341-51848360 | Msa1161680:CDS | 55.0% | |
ACCGTATGCTTAACCACCGC+CGG | - | chr7_4:51848423-51848442 | None:intergenic | 55.0% | |
ACACAGGACTCGGCTGTTGT+TGG | - | chr7_4:51848479-51848498 | None:intergenic | 55.0% | |
TGGCGACCGGAGTGACAATT+TGG | - | chr7_4:51848537-51848556 | None:intergenic | 55.0% | |
GTGGGAATGTGTGTGTGTGG+TGG | - | chr7_4:51850393-51850412 | None:intergenic | 55.0% | |
GTTTCTGCATGACTAGGGGC+AGG | - | chr7_4:51850692-51850711 | None:intergenic | 55.0% | |
! | TGTTTGTTGGGAGGAGGGAG+TGG | - | chr7_4:51850756-51850775 | None:intergenic | 55.0% |
! | GGCTCTTGTTTGTTGGGAGG+AGG | - | chr7_4:51850762-51850781 | None:intergenic | 55.0% |
TTAGTTGTTGGGTGGGTCCC+TGG | + | chr7_4:51851009-51851028 | Msa1161680:intron | 55.0% | |
TGGGTCCCTGGTACCAACAA+TGG | + | chr7_4:51851021-51851040 | Msa1161680:intron | 55.0% | |
AAGGGTTCTCGCATGGATGG+TGG | + | chr7_4:51851348-51851367 | Msa1161680:intron | 55.0% | |
TTCACGGCGAGAAACGACGC+CGG | + | chr7_4:51847844-51847863 | Msa1161680:CDS | 60.0% | |
GTGGCGACGGGAATGAGAAG+TGG | - | chr7_4:51847924-51847943 | None:intergenic | 60.0% | |
TAAGGAAACGGCGGTGGCGA+CGG | - | chr7_4:51847937-51847956 | None:intergenic | 60.0% | |
CGAAGGTAAGGAAACGGCGG+TGG | - | chr7_4:51847943-51847962 | None:intergenic | 60.0% | |
GCCGGTAAAGTCGGACTCCT+CGG | - | chr7_4:51848174-51848193 | None:intergenic | 60.0% | |
GAGGAGTCCGACTTTACCGG+CGG | + | chr7_4:51848173-51848192 | Msa1161680:CDS | 60.0% | |
AGTAGCGAGGCTGATGGGAC+TGG | + | chr7_4:51848254-51848273 | Msa1161680:CDS | 60.0% | |
AGCGTTGCAGAGATGCGACG+AGG | + | chr7_4:51848332-51848351 | Msa1161680:CDS | 60.0% | |
GACGTCGACGGAACGAGTTC+AGG | - | chr7_4:51848399-51848418 | None:intergenic | 60.0% | |
GCCGGCGGTGGTTAAGCATA+CGG | + | chr7_4:51848419-51848438 | Msa1161680:CDS | 60.0% | |
GTCGGTTATTCCGGGACGGA+GGG | - | chr7_4:51850045-51850064 | None:intergenic | 60.0% | |
AGTCGGTTATTCCGGGACGG+AGG | - | chr7_4:51850046-51850065 | None:intergenic | 60.0% | |
!! | GAGGAGGGAGTGGTTTGGTG+GGG | - | chr7_4:51850746-51850765 | None:intergenic | 60.0% |
!! | GGAGGAGGGAGTGGTTTGGT+GGG | - | chr7_4:51850747-51850766 | None:intergenic | 60.0% |
GTTGGGAGGAGGGAGTGGTT+TGG | - | chr7_4:51850751-51850770 | None:intergenic | 60.0% | |
TCATCAGGCCACCACACGCA+TGG | - | chr7_4:51850831-51850850 | None:intergenic | 60.0% | |
!! | CGGTGTCGCCGTCGTCTTCA+CGG | + | chr7_4:51847828-51847847 | Msa1161680:CDS | 65.0% |
AAGGAAACGGCGGTGGCGAC+GGG | - | chr7_4:51847936-51847955 | None:intergenic | 65.0% | |
! | ATTAGCGGTGGCGGTGACGG+TGG | - | chr7_4:51848070-51848089 | None:intergenic | 65.0% |
CTCGAACGGCGAATCTCCGC+CGG | - | chr7_4:51848192-51848211 | None:intergenic | 65.0% | |
ACTCGTTCCGTCGACGTCGC+CGG | + | chr7_4:51848401-51848420 | Msa1161680:CDS | 65.0% | |
! | GGGAGGAGGGAGTGGTTTGG+TGG | - | chr7_4:51850748-51850767 | None:intergenic | 65.0% |
CGTTCCGTCGACGTCGCCGG+CGG | + | chr7_4:51848404-51848423 | Msa1161680:CDS | 75.0% | |
ACCACCGCCGGCGACGTCGA+CGG | - | chr7_4:51848411-51848430 | None:intergenic | 75.0% | |
! | TCCGTCGACGTCGCCGGCGG+TGG | + | chr7_4:51848407-51848426 | Msa1161680:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 51847753 | 51852356 | 51847753 | ID=Msa1161680;Name=Msa1161680 |
chr7_4 | mRNA | 51847753 | 51852356 | 51847753 | ID=Msa1161680-mRNA-1;Parent=Msa1161680;Name=Msa1161680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=56|1|1|1|1|1|3|176|337 |
chr7_4 | exon | 51847753 | 51847962 | 51847753 | ID=Msa1161680-mRNA-1:exon:14760;Parent=Msa1161680-mRNA-1 |
chr7_4 | exon | 51848040 | 51848564 | 51848040 | ID=Msa1161680-mRNA-1:exon:14761;Parent=Msa1161680-mRNA-1 |
chr7_4 | exon | 51851846 | 51852356 | 51851846 | ID=Msa1161680-mRNA-1:exon:14762;Parent=Msa1161680-mRNA-1 |
chr7_4 | five_prime_UTR | 51847753 | 51847808 | 51847753 | ID=Msa1161680-mRNA-1:five_prime_utr;Parent=Msa1161680-mRNA-1 |
chr7_4 | CDS | 51847809 | 51847962 | 51847809 | ID=Msa1161680-mRNA-1:cds;Parent=Msa1161680-mRNA-1 |
chr7_4 | CDS | 51848040 | 51848564 | 51848040 | ID=Msa1161680-mRNA-1:cds;Parent=Msa1161680-mRNA-1 |
chr7_4 | CDS | 51851846 | 51852180 | 51851846 | ID=Msa1161680-mRNA-1:cds;Parent=Msa1161680-mRNA-1 |
chr7_4 | three_prime_UTR | 51852181 | 51852356 | 51852181 | ID=Msa1161680-mRNA-1:three_prime_utr;Parent=Msa1161680-mRNA-1 |
Gene Sequence |
Protein sequence |