AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0683570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683570 MtrunA17_Chr4g0030031 91.707 615 20 1 3 586 6 620 0.0 1111
Msa0683570 MtrunA17_Chr7g0263701 45.769 579 288 7 11 583 49 607 1.65e-132 400
Msa0683570 MtrunA17_Chr1g0181611 44.803 558 252 7 38 583 70 583 1.32e-120 369
Msa0683570 MtrunA17_Chr2g0326021 52.796 447 158 9 154 586 128 535 8.00e-118 360
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683570 AT5G60210.2 42.395 618 263 13 3 586 6 564 1.81e-129 391
Msa0683570 AT5G60210.4 42.395 618 263 13 3 586 6 564 1.81e-129 391
Msa0683570 AT5G60210.1 42.395 618 263 13 3 586 6 564 1.81e-129 391
Msa0683570 AT5G60210.6 42.395 618 263 13 3 586 6 564 1.81e-129 391
Msa0683570 AT5G60210.5 42.258 620 265 13 1 586 28 588 4.52e-129 391
Msa0683570 AT5G60210.3 42.258 620 265 13 1 586 28 588 4.52e-129 391
Msa0683570 AT2G37080.3 40.299 603 266 12 11 586 46 581 4.44e-106 331
Msa0683570 AT2G37080.1 40.232 604 267 12 11 586 46 583 1.55e-105 330
Msa0683570 AT2G37080.2 40.232 604 267 12 11 586 46 583 1.55e-105 330
Msa0683570 AT3G53350.7 30.725 345 112 11 243 586 178 396 2.33e-23 103
Msa0683570 AT3G53350.7 40.397 151 72 3 3 153 40 172 1.22e-19 91.7
Msa0683570 AT3G53350.1 30.725 345 112 11 243 586 178 396 2.33e-23 103
Msa0683570 AT3G53350.1 40.397 151 72 3 3 153 40 172 1.22e-19 91.7
Msa0683570 AT3G53350.5 30.725 345 112 11 243 586 178 396 2.33e-23 103
Msa0683570 AT3G53350.5 40.397 151 72 3 3 153 40 172 1.22e-19 91.7
Msa0683570 AT3G53350.3 30.725 345 112 11 243 586 176 394 2.52e-23 102
Msa0683570 AT3G53350.3 38.411 151 73 2 3 153 40 170 1.18e-19 92.0
Msa0683570 AT3G53350.2 30.725 345 112 11 243 586 176 394 2.52e-23 102
Msa0683570 AT3G53350.2 38.411 151 73 2 3 153 40 170 1.18e-19 92.0
Msa0683570 AT3G53350.8 30.725 345 112 11 243 586 187 405 6.05e-23 102
Msa0683570 AT3G53350.8 38.411 151 73 2 3 153 51 181 1.99e-19 91.3
Msa0683570 AT3G53350.4 30.725 345 112 11 243 586 189 407 6.41e-23 102
Msa0683570 AT3G53350.4 40.397 151 72 3 3 153 51 183 2.14e-19 91.3
Msa0683570 AT3G53350.6 30.725 345 112 11 243 586 189 407 6.41e-23 102
Msa0683570 AT3G53350.6 40.397 151 72 3 3 153 51 183 2.14e-19 91.3
Msa0683570 AT3G53350.9 30.725 345 112 11 243 586 206 424 7.17e-23 102
Msa0683570 AT3G53350.9 43.333 120 54 1 34 153 95 200 1.94e-18 88.6
Msa0683570 AT1G78430.1 37.640 178 99 5 410 583 151 320 1.41e-18 87.4
Msa0683570 AT1G17140.1 34.254 181 98 4 415 583 169 340 4.18e-14 74.3
Msa0683570 AT1G17140.2 34.254 181 98 4 415 583 169 340 4.18e-14 74.3

Find 100 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTTGTGCCTGAGTTTC+AGG 0.158972 4_4:+46180389 None:intergenic
CAGTTCCTTTCACACATAAA+TGG 0.272989 4_4:+46181645 None:intergenic
AAAGAACCGTCGAGATTCTA+AGG 0.289339 4_4:-46180331 Msa0683570:CDS
GAGCAACTCTTAGCCCTATC+TGG 0.293900 4_4:-46180752 Msa0683570:CDS
TCAACATCTTCAGCATAATT+AGG 0.312004 4_4:+46179327 None:intergenic
TACTGAGAGATCTGTGTCTT+TGG 0.319421 4_4:-46179376 Msa0683570:CDS
TCTTAGTTCGCTTTCCATTT+CGG 0.319511 4_4:+46179482 None:intergenic
TAGGGCTAAGAGTTGCTCTT+TGG 0.329098 4_4:+46180757 None:intergenic
TGCTTTGTCTTCTGCATTGA+AGG 0.331152 4_4:-46180579 Msa0683570:CDS
ATAATTAGGTGAATACTTAT+AGG 0.350218 4_4:+46179341 None:intergenic
CGGTCACCCTCGCCACTTTA+CGG 0.350515 4_4:+46179535 None:intergenic
GGTAACATGCTGAAGAAGTT+TGG 0.353831 4_4:-46179279 Msa0683570:CDS
GCACGCGGAGAAACTTTCTT+AGG 0.360740 4_4:+46181480 None:intergenic
ATCTCTTCTTCAATATGATT+AGG 0.361618 4_4:+46180104 None:intergenic
CCCGAGCAAAATATCTGAAT+TGG 0.366490 4_4:-46180882 Msa0683570:CDS
TATTGTGATTTGTAAGCATT+AGG 0.367462 4_4:-46179006 Msa0683570:three_prime_UTR
CAGCAATGCGTACGAGTTGA+TGG 0.372307 4_4:-46179985 Msa0683570:CDS
CACTCAACTTTGCATTGCAT+TGG 0.372439 4_4:-46179038 Msa0683570:three_prime_UTR
TGAAGAAGTTTGGAGTCTTA+TGG 0.383316 4_4:-46179269 Msa0683570:CDS
GTTCTTTGCTATTCTTGAGT+TGG 0.389004 4_4:+46180411 None:intergenic
CAACTCCATTGCTTTGGAGT+TGG 0.399162 4_4:-46180279 Msa0683570:CDS
GGCAGCTGCTGCTATGATTT+CGG 0.401359 4_4:-46179418 Msa0683570:CDS
TCAAAAGGAACTCAAAAGAT+TGG 0.417608 4_4:-46179769 Msa0683570:CDS
TGGCTGCAACTCCATTGCTT+TGG 0.418359 4_4:-46180285 Msa0683570:CDS
CGCGAGGCGGTTACGAAACT+CGG 0.423677 4_4:-46179588 Msa0683570:CDS
GCTGAAAGCACAACTTGAAT+TGG 0.425528 4_4:-46180546 Msa0683570:CDS
AACTGATATTGAAGAGTTGA+AGG 0.430741 4_4:-46179898 Msa0683570:CDS
TGTTCTTTGAAGTCTGAGAT+TGG 0.431751 4_4:-46180080 Msa0683570:CDS
TATCTAGAGCTATGTGCTAC+TGG 0.432289 4_4:-46180704 Msa0683570:CDS
AGAGTTGAAGGCTAATCTAA+TGG 0.435601 4_4:-46179886 Msa0683570:CDS
CTTCAGCATCTCGTTCTCTT+CGG 0.435786 4_4:+46179683 None:intergenic
CCTCCAACTCACATTGTCTC+TGG 0.446526 4_4:+46179940 None:intergenic
AAATGAACATGGACTTCAAA+AGG 0.449057 4_4:-46179784 Msa0683570:CDS
GCAAGCTCAGCAAGACTTCG+AGG 0.450128 4_4:-46180783 Msa0683570:CDS
ACTCAACTTTGCATTGCATT+GGG 0.453040 4_4:-46179037 Msa0683570:three_prime_UTR
CATTAGGTGAAATTTGTAGT+AGG 0.456956 4_4:-46178990 Msa0683570:three_prime_UTR
GTTGATGGAGCAGATAAAAT+CGG 0.470705 4_4:-46179970 Msa0683570:CDS
GAGCAGATAAAATCGGAATC+AGG 0.477930 4_4:-46179963 Msa0683570:CDS
AACCGAGTTGCAAGGTATCA+TGG 0.481196 4_4:-46179856 Msa0683570:CDS
AAGCGAACTAAGAAGGCTTA+AGG 0.481520 4_4:-46179472 Msa0683570:CDS
TCAAACTCAACAAGCTGAAT+CGG 0.486664 4_4:-46180504 Msa0683570:CDS
CAGAAGTGGTTCTTCTGAAG+TGG 0.492122 4_4:-46181505 Msa0683570:CDS
ACAAGTGGCAAGCTCCGAAA+TGG 0.492854 4_4:-46179496 Msa0683570:CDS
GTCAACTGAGAGATGCTGTT+GGG 0.495983 4_4:+46180607 None:intergenic
GAAAATCAACAAGAGTTGCT+TGG 0.499437 4_4:-46179658 Msa0683570:CDS
CCAGAGACAATGTGAGTTGG+AGG 0.499761 4_4:-46179940 Msa0683570:CDS
TCACTCTGTTCAAAATCTTG+TGG 0.500181 4_4:-46180177 Msa0683570:CDS
TGATTTCGGCAGGGAACAAT+GGG 0.505513 4_4:-46179404 Msa0683570:CDS
TGAAATATTGAGAAATAGAG+AGG 0.505982 4_4:-46180129 Msa0683570:CDS
ACTTCAAGATGATTTGAAGA+AGG 0.507940 4_4:-46180843 Msa0683570:CDS
TGAATTGAAAGCTGATATGA+TGG 0.510421 4_4:-46179733 Msa0683570:CDS
GCTGCTGCTATGATTTCGGC+AGG 0.511645 4_4:-46179414 Msa0683570:CDS
ATGATTTCGGCAGGGAACAA+TGG 0.513538 4_4:-46179405 Msa0683570:CDS
TAGCAAAGAACCTGAAACTC+AGG 0.524331 4_4:-46180399 Msa0683570:CDS
CTTTGAAGTCTGAGATTGGA+CGG 0.524621 4_4:-46180076 Msa0683570:CDS
AGTTACCATTTATGTGTGAA+AGG 0.525421 4_4:-46181650 Msa0683570:five_prime_UTR
GACGTTGCGAGAGACGTAGA+TGG 0.528471 4_4:-46180305 Msa0683570:CDS
ACGTGATAGCGCATGGAAGT+CGG 0.536408 4_4:-46180642 Msa0683570:CDS
AAATGGAAAGCGAACTAAGA+AGG 0.538764 4_4:-46179479 Msa0683570:CDS
TTCCATGATACCTTGCAACT+CGG 0.542413 4_4:+46179854 None:intergenic
AGACAGAAGCAACCGTAAAG+TGG 0.543135 4_4:-46179547 Msa0683570:CDS
ATCAGAATCACTTTCTCAGA+TGG 0.543609 4_4:-46180447 Msa0683570:CDS
GCAGTTAGAAGCAGCACAAG+TGG 0.544851 4_4:-46179511 Msa0683570:CDS
TTGTGCTGCTTCTAACTGCT+CGG 0.545994 4_4:+46179515 None:intergenic
TTGTTCTTGATATTTAGTCT+CGG 0.554617 4_4:+46180031 None:intergenic
AGATGATTTGAAGAAGGTGA+AGG 0.573247 4_4:-46180837 Msa0683570:CDS
AGGCCAGAGACAATGTGAGT+TGG 0.574082 4_4:-46179943 Msa0683570:CDS
AGTTGGAACATTCTAGAGCA+AGG 0.576110 4_4:-46180262 Msa0683570:CDS
CAGAAGAACGTGATAGCGCA+TGG 0.577018 4_4:-46180649 Msa0683570:CDS
ATGATTCAGACAAAATAAGC+TGG 0.579255 4_4:+46180813 None:intergenic
TACGAAACTCGGGATTGTGA+TGG 0.584576 4_4:-46179577 Msa0683570:CDS
GAAACTCGGGATTGTGATGG+AGG 0.585195 4_4:-46179574 Msa0683570:CDS
ATGTTCCAACTCCAAAGCAA+TGG 0.588382 4_4:+46180274 None:intergenic
TTAAGGTACAGTCTGATCAA+TGG 0.588594 4_4:-46179455 Msa0683570:CDS
AGCCGAGGCTGCAAAACGCG+AGG 0.589775 4_4:-46179604 Msa0683570:CDS
CTTGAATTGGTAGCTACTTG+TGG 0.590895 4_4:-46180533 Msa0683570:CDS
GGATGACAGTAAAGTGAGAG+AGG 0.601699 4_4:-46179637 Msa0683570:CDS
GAGTAGTCGTAGTTCTCAGT+TGG 0.604285 4_4:+46181451 None:intergenic
GGATGATTGTAAATTCGAGA+AGG 0.605294 4_4:-46180156 Msa0683570:CDS
GTTGGAACATTCTAGAGCAA+GGG 0.613738 4_4:-46180261 Msa0683570:CDS
ATGTCATCACAAAATGAACA+TGG 0.616779 4_4:-46179795 Msa0683570:CDS
CTCAGTTGGCGTACAGCACG+CGG 0.616898 4_4:+46181465 None:intergenic
GACAAGGAAACCGAGTTGCA+AGG 0.617966 4_4:-46179864 Msa0683570:CDS
GAAATTTGTAGTAGGTGTTG+TGG 0.619946 4_4:-46178982 Msa0683570:three_prime_UTR
CGAGGCTGCAAAACGCGAGG+CGG 0.620966 4_4:-46179601 Msa0683570:CDS
AAGCAACCGTAAAGTGGCGA+GGG 0.625212 4_4:-46179541 Msa0683570:CDS
ACAGTCTGATCAATGGAGGA+AGG 0.630704 4_4:-46179448 Msa0683570:CDS
GCGAGGCGGTTACGAAACTC+GGG 0.631591 4_4:-46179587 Msa0683570:CDS
AGTCAACTGAGAGATGCTGT+TGG 0.631624 4_4:+46180606 None:intergenic
CAATTTACAATGCAATGCAA+AGG 0.632590 4_4:+46179138 None:intergenic
TCAATGGAGGAAGGCTGCAG+AGG 0.637395 4_4:-46179439 Msa0683570:CDS
GAAGCAACCGTAAAGTGGCG+AGG 0.639605 4_4:-46179542 Msa0683570:CDS
GAAGGCTAATCTAATGGACA+AGG 0.644778 4_4:-46179880 Msa0683570:CDS
ATTGTTTAATAATGACAACA+AGG 0.651081 4_4:-46181615 Msa0683570:intron
TTTATGTGTGAAAGGAACTG+AGG 0.652219 4_4:-46181642 Msa0683570:five_prime_UTR
AGGTACAGTCTGATCAATGG+AGG 0.656687 4_4:-46179452 Msa0683570:CDS
GTCATCCCTTAGAATCTCGA+CGG 0.658533 4_4:+46180325 None:intergenic
CTGCTGCTATGATTTCGGCA+GGG 0.663851 4_4:-46179413 Msa0683570:CDS
AGAGGAAATAGAGAAAGCCG+AGG 0.674506 4_4:-46179619 Msa0683570:CDS
AAGAACCGTCGAGATTCTAA+GGG 0.684529 4_4:-46180330 Msa0683570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATCTTTAATTATAGAAA+CGG + chr4_4:46179422-46179441 None:intergenic 10.0%
!! ATTGTTTAATAATGACAACA+AGG - chr4_4:46179032-46179051 Msa0683570:three_prime_UTR 20.0%
!! TACAAAATCTATGTTGTAAA+TGG + chr4_4:46179092-46179111 None:intergenic 20.0%
!!! TTTTATTGAAATTTCAGAAG+TGG - chr4_4:46179128-46179147 Msa0683570:three_prime_UTR 20.0%
!! TCAAACTAGTAAAATATCAA+AGG - chr4_4:46179250-46179269 Msa0683570:exon 20.0%
!! AAAATCTTCTCAACTAAAAA+AGG + chr4_4:46179711-46179730 None:intergenic 20.0%
!!! ATTCTGATAAGTTTTGATTT+AGG + chr4_4:46180188-46180207 None:intergenic 20.0%
!! ATAATTAGGTGAATACTTAT+AGG + chr4_4:46181309-46181328 None:intergenic 20.0%
! ACAACAAGGTATAAATTGAT+TGG - chr4_4:46179046-46179065 Msa0683570:three_prime_UTR 25.0%
! CCAAACAAAGTCTATATTTA+AGG + chr4_4:46179367-46179386 None:intergenic 25.0%
! CCTTAAATATAGACTTTGTT+TGG - chr4_4:46179364-46179383 Msa0683570:CDS 25.0%
!!! ATTAAGTTGATTATCCAAAC+TGG - chr4_4:46179617-46179636 Msa0683570:CDS 25.0%
!!! TTAAGTTGATTATCCAAACT+GGG - chr4_4:46179618-46179637 Msa0683570:CDS 25.0%
! TATAATTGATGTTGCATTAG+AGG - chr4_4:46179737-46179756 Msa0683570:CDS 25.0%
! TGAAATATTGAGAAATAGAG+AGG - chr4_4:46180518-46180537 Msa0683570:CDS 25.0%
! ATCTCTTCTTCAATATGATT+AGG + chr4_4:46180546-46180565 None:intergenic 25.0%
! TTGTTCTTGATATTTAGTCT+CGG + chr4_4:46180619-46180638 None:intergenic 25.0%
!!! ACTGTTTGTTATGTTTTAGT+TGG - chr4_4:46181551-46181570 Msa0683570:intron 25.0%
!! TATTGTGATTTGTAAGCATT+AGG - chr4_4:46181641-46181660 Msa0683570:five_prime_UTR 25.0%
AGTTACCATTTATGTGTGAA+AGG - chr4_4:46178997-46179016 Msa0683570:three_prime_UTR 30.0%
! CAGAGGTAGTATTTTATTAC+TGG + chr4_4:46179343-46179362 None:intergenic 30.0%
AAGTCTATATTTAAGGACAG+AGG + chr4_4:46179360-46179379 None:intergenic 30.0%
! TCCAATTCAGATATTTTGCT+CGG + chr4_4:46179769-46179788 None:intergenic 30.0%
ACTTCAAGATGATTTGAAGA+AGG - chr4_4:46179804-46179823 Msa0683570:CDS 30.0%
ATGATTCAGACAAAATAAGC+TGG + chr4_4:46179837-46179856 None:intergenic 30.0%
AACTGATATTGAAGAGTTGA+AGG - chr4_4:46180749-46180768 Msa0683570:CDS 30.0%
ATGTCATCACAAAATGAACA+TGG - chr4_4:46180852-46180871 Msa0683570:CDS 30.0%
AAATGAACATGGACTTCAAA+AGG - chr4_4:46180863-46180882 Msa0683570:CDS 30.0%
TCAAAAGGAACTCAAAAGAT+TGG - chr4_4:46180878-46180897 Msa0683570:CDS 30.0%
TGAATTGAAAGCTGATATGA+TGG - chr4_4:46180914-46180933 Msa0683570:intron 30.0%
TCAACATCTTCAGCATAATT+AGG + chr4_4:46181323-46181342 None:intergenic 30.0%
GATTTCCAGAGAAAGAAAAA+TGG - chr4_4:46181347-46181366 Msa0683570:intron 30.0%
!! TGTTACCATTTTTCTTTCTC+TGG + chr4_4:46181355-46181374 None:intergenic 30.0%
!!! TCAATCAGTCACTATTTTTG+AGG + chr4_4:46181410-46181429 None:intergenic 30.0%
CAATTTACAATGCAATGCAA+AGG + chr4_4:46181512-46181531 None:intergenic 30.0%
CATTAGGTGAAATTTGTAGT+AGG - chr4_4:46181657-46181676 Msa0683570:five_prime_UTR 30.0%
CAGTTCCTTTCACACATAAA+TGG + chr4_4:46179005-46179024 None:intergenic 35.0%
TTTATGTGTGAAAGGAACTG+AGG - chr4_4:46179005-46179024 Msa0683570:three_prime_UTR 35.0%
!! TGGTAAAAACTTGTTACCTC+AGG + chr4_4:46179323-46179342 None:intergenic 35.0%
AAACACTTGTGAGACTGTTT+GGG + chr4_4:46179507-46179526 None:intergenic 35.0%
TAAACACTTGTGAGACTGTT+TGG + chr4_4:46179508-46179527 None:intergenic 35.0%
! CCAATTCAGATATTTTGCTC+GGG + chr4_4:46179768-46179787 None:intergenic 35.0%
AGATGATTTGAAGAAGGTGA+AGG - chr4_4:46179810-46179829 Msa0683570:CDS 35.0%
TCAAACTCAACAAGCTGAAT+CGG - chr4_4:46180143-46180162 Msa0683570:CDS 35.0%
ATCAGAATCACTTTCTCAGA+TGG - chr4_4:46180200-46180219 Msa0683570:CDS 35.0%
!! GTTCTTTGCTATTCTTGAGT+TGG + chr4_4:46180239-46180258 None:intergenic 35.0%
TCACTCTGTTCAAAATCTTG+TGG - chr4_4:46180470-46180489 Msa0683570:CDS 35.0%
GGATGATTGTAAATTCGAGA+AGG - chr4_4:46180491-46180510 Msa0683570:CDS 35.0%
!! TGTTCTTTGAAGTCTGAGAT+TGG - chr4_4:46180567-46180586 Msa0683570:CDS 35.0%
! GTTGATGGAGCAGATAAAAT+CGG - chr4_4:46180677-46180696 Msa0683570:CDS 35.0%
AGAGTTGAAGGCTAATCTAA+TGG - chr4_4:46180761-46180780 Msa0683570:CDS 35.0%
GAAAATCAACAAGAGTTGCT+TGG - chr4_4:46180989-46181008 Msa0683570:intron 35.0%
TCTTAGTTCGCTTTCCATTT+CGG + chr4_4:46181168-46181187 None:intergenic 35.0%
AAATGGAAAGCGAACTAAGA+AGG - chr4_4:46181168-46181187 Msa0683570:intron 35.0%
TTAAGGTACAGTCTGATCAA+TGG - chr4_4:46181192-46181211 Msa0683570:intron 35.0%
! TGAAGAAGTTTGGAGTCTTA+TGG - chr4_4:46181378-46181397 Msa0683570:intron 35.0%
ACTCAACTTTGCATTGCATT+GGG - chr4_4:46181610-46181629 Msa0683570:intron 35.0%
! GAAATTTGTAGTAGGTGTTG+TGG - chr4_4:46181665-46181684 Msa0683570:five_prime_UTR 35.0%
!! AACTTGTTACCTCAGGAACT+GGG + chr4_4:46179316-46179335 None:intergenic 40.0%
!! AAACTTGTTACCTCAGGAAC+TGG + chr4_4:46179317-46179336 None:intergenic 40.0%
AAGTTATGCAATGCCCAGTT+TGG + chr4_4:46179634-46179653 None:intergenic 40.0%
CACATTGCTAGCATTGCTTT+CGG - chr4_4:46179676-46179695 Msa0683570:CDS 40.0%
CCCGAGCAAAATATCTGAAT+TGG - chr4_4:46179765-46179784 Msa0683570:CDS 40.0%
!! CTCTTCGAGTTTTCCAGATA+GGG + chr4_4:46179911-46179930 None:intergenic 40.0%
!! ACTCTTCGAGTTTTCCAGAT+AGG + chr4_4:46179912-46179931 None:intergenic 40.0%
! TATCTAGAGCTATGTGCTAC+TGG - chr4_4:46179943-46179962 Msa0683570:CDS 40.0%
! CACGTTCTTCTGTGATTTTC+TGG + chr4_4:46179990-46180009 None:intergenic 40.0%
TGCTTTGTCTTCTGCATTGA+AGG - chr4_4:46180068-46180087 Msa0683570:CDS 40.0%
! GCTGAAAGCACAACTTGAAT+TGG - chr4_4:46180101-46180120 Msa0683570:CDS 40.0%
! CTTGAATTGGTAGCTACTTG+TGG - chr4_4:46180114-46180133 Msa0683570:CDS 40.0%
TAGCAAAGAACCTGAAACTC+AGG - chr4_4:46180248-46180267 Msa0683570:CDS 40.0%
AAGATTTGTGCCTGAGTTTC+AGG + chr4_4:46180261-46180280 None:intergenic 40.0%
AAAGAACCGTCGAGATTCTA+AGG - chr4_4:46180316-46180335 Msa0683570:CDS 40.0%
AAGAACCGTCGAGATTCTAA+GGG - chr4_4:46180317-46180336 Msa0683570:CDS 40.0%
ATGTTCCAACTCCAAAGCAA+TGG + chr4_4:46180376-46180395 None:intergenic 40.0%
!! AGTTGGAACATTCTAGAGCA+AGG - chr4_4:46180385-46180404 Msa0683570:CDS 40.0%
!! GTTGGAACATTCTAGAGCAA+GGG - chr4_4:46180386-46180405 Msa0683570:CDS 40.0%
!! CTTTGAAGTCTGAGATTGGA+CGG - chr4_4:46180571-46180590 Msa0683570:CDS 40.0%
GAGCAGATAAAATCGGAATC+AGG - chr4_4:46180684-46180703 Msa0683570:CDS 40.0%
! GAAGGCTAATCTAATGGACA+AGG - chr4_4:46180767-46180786 Msa0683570:CDS 40.0%
TTCCATGATACCTTGCAACT+CGG + chr4_4:46180796-46180815 None:intergenic 40.0%
AAGCGAACTAAGAAGGCTTA+AGG - chr4_4:46181175-46181194 Msa0683570:intron 40.0%
TACTGAGAGATCTGTGTCTT+TGG - chr4_4:46181271-46181290 Msa0683570:intron 40.0%
GGTAACATGCTGAAGAAGTT+TGG - chr4_4:46181368-46181387 Msa0683570:intron 40.0%
CACTCAACTTTGCATTGCAT+TGG - chr4_4:46181609-46181628 Msa0683570:intron 40.0%
! CAGAAGTGGTTCTTCTGAAG+TGG - chr4_4:46179142-46179161 Msa0683570:three_prime_UTR 45.0%
GAGTAGTCGTAGTTCTCAGT+TGG + chr4_4:46179199-46179218 None:intergenic 45.0%
TAGGGCTAAGAGTTGCTCTT+TGG + chr4_4:46179893-46179912 None:intergenic 45.0%
GTCAACTGAGAGATGCTGTT+GGG + chr4_4:46180043-46180062 None:intergenic 45.0%
AGTCAACTGAGAGATGCTGT+TGG + chr4_4:46180044-46180063 None:intergenic 45.0%
GTCATCCCTTAGAATCTCGA+CGG + chr4_4:46180325-46180344 None:intergenic 45.0%
!! CAACTCCATTGCTTTGGAGT+TGG - chr4_4:46180368-46180387 Msa0683570:CDS 45.0%
! AACCGAGTTGCAAGGTATCA+TGG - chr4_4:46180791-46180810 Msa0683570:CDS 45.0%
CTTCAGCATCTCGTTCTCTT+CGG + chr4_4:46180967-46180986 None:intergenic 45.0%
GGATGACAGTAAAGTGAGAG+AGG - chr4_4:46181010-46181029 Msa0683570:intron 45.0%
AGAGGAAATAGAGAAAGCCG+AGG - chr4_4:46181028-46181047 Msa0683570:intron 45.0%
TACGAAACTCGGGATTGTGA+TGG - chr4_4:46181070-46181089 Msa0683570:intron 45.0%
AGACAGAAGCAACCGTAAAG+TGG - chr4_4:46181100-46181119 Msa0683570:intron 45.0%
!! TTGTGCTGCTTCTAACTGCT+CGG + chr4_4:46181135-46181154 None:intergenic 45.0%
AGGTACAGTCTGATCAATGG+AGG - chr4_4:46181195-46181214 Msa0683570:intron 45.0%
ACAGTCTGATCAATGGAGGA+AGG - chr4_4:46181199-46181218 Msa0683570:intron 45.0%
ATGATTTCGGCAGGGAACAA+TGG - chr4_4:46181242-46181261 Msa0683570:intron 45.0%
TGATTTCGGCAGGGAACAAT+GGG - chr4_4:46181243-46181262 Msa0683570:intron 45.0%
!! TATAATTAAAGATAAATTAA+AGG - chr4_4:46179426-46179445 Msa0683570:CDS 5.0%
GCACGCGGAGAAACTTTCTT+AGG + chr4_4:46179170-46179189 None:intergenic 50.0%
! TGACTTGCGATCAGCGAGTT+TGG + chr4_4:46179285-46179304 None:intergenic 50.0%
GAGCAACTCTTAGCCCTATC+TGG - chr4_4:46179895-46179914 Msa0683570:CDS 50.0%
! CAGAAGAACGTGATAGCGCA+TGG - chr4_4:46179998-46180017 Msa0683570:CDS 50.0%
! ACGTGATAGCGCATGGAAGT+CGG - chr4_4:46180005-46180024 Msa0683570:CDS 50.0%
TGGCTGCAACTCCATTGCTT+TGG - chr4_4:46180362-46180381 Msa0683570:CDS 50.0%
! CAGCAATGCGTACGAGTTGA+TGG - chr4_4:46180662-46180681 Msa0683570:CDS 50.0%
AGGCCAGAGACAATGTGAGT+TGG - chr4_4:46180704-46180723 Msa0683570:CDS 50.0%
CCTCCAACTCACATTGTCTC+TGG + chr4_4:46180710-46180729 None:intergenic 50.0%
! CCAGAGACAATGTGAGTTGG+AGG - chr4_4:46180707-46180726 Msa0683570:CDS 50.0%
GACAAGGAAACCGAGTTGCA+AGG - chr4_4:46180783-46180802 Msa0683570:CDS 50.0%
GAAACTCGGGATTGTGATGG+AGG - chr4_4:46181073-46181092 Msa0683570:intron 50.0%
AAGCAACCGTAAAGTGGCGA+GGG - chr4_4:46181106-46181125 Msa0683570:intron 50.0%
GCAGTTAGAAGCAGCACAAG+TGG - chr4_4:46181136-46181155 Msa0683570:intron 50.0%
ACAAGTGGCAAGCTCCGAAA+TGG - chr4_4:46181151-46181170 Msa0683570:intron 50.0%
GGCAGCTGCTGCTATGATTT+CGG - chr4_4:46181229-46181248 Msa0683570:intron 50.0%
CTGCTGCTATGATTTCGGCA+GGG - chr4_4:46181234-46181253 Msa0683570:intron 50.0%
ACCTCAGGAACTGGGCTTCT+GGG + chr4_4:46179308-46179327 None:intergenic 55.0%
TACCTCAGGAACTGGGCTTC+TGG + chr4_4:46179309-46179328 None:intergenic 55.0%
GCAAGCTCAGCAAGACTTCG+AGG - chr4_4:46179864-46179883 Msa0683570:CDS 55.0%
GACGTTGCGAGAGACGTAGA+TGG - chr4_4:46180342-46180361 Msa0683570:CDS 55.0%
GAAGCAACCGTAAAGTGGCG+AGG - chr4_4:46181105-46181124 Msa0683570:intron 55.0%
TCAATGGAGGAAGGCTGCAG+AGG - chr4_4:46181208-46181227 Msa0683570:intron 55.0%
GCTGCTGCTATGATTTCGGC+AGG - chr4_4:46181233-46181252 Msa0683570:intron 55.0%
CTCAGTTGGCGTACAGCACG+CGG + chr4_4:46179185-46179204 None:intergenic 60.0%
ACCCAGAAGCCCAGTTCCTG+AGG - chr4_4:46179304-46179323 Msa0683570:CDS 60.0%
CGCGAGGCGGTTACGAAACT+CGG - chr4_4:46181059-46181078 Msa0683570:intron 60.0%
GCGAGGCGGTTACGAAACTC+GGG - chr4_4:46181060-46181079 Msa0683570:intron 60.0%
! CGGTCACCCTCGCCACTTTA+CGG + chr4_4:46181115-46181134 None:intergenic 60.0%
AGCCGAGGCTGCAAAACGCG+AGG - chr4_4:46181043-46181062 Msa0683570:intron 65.0%
! CGCCTCGCGTTTTGCAGCCT+CGG + chr4_4:46181048-46181067 None:intergenic 65.0%
CGAGGCTGCAAAACGCGAGG+CGG - chr4_4:46181046-46181065 Msa0683570:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 46178981 46181688 46178981 ID=Msa0683570;Name=Msa0683570
chr4_4 mRNA 46178981 46181688 46178981 ID=Msa0683570-mRNA-1;Parent=Msa0683570;Name=Msa0683570-mRNA-1;_AED=0.11;_eAED=0.11;_QI=62|0.5|0.66|1|0.5|0.66|3|270|586
chr4_4 exon 46178981 46180912 46178981 ID=Msa0683570-mRNA-1:exon:11424;Parent=Msa0683570-mRNA-1
chr4_4 exon 46181437 46181524 46181437 ID=Msa0683570-mRNA-1:exon:11423;Parent=Msa0683570-mRNA-1
chr4_4 exon 46181616 46181688 46181616 ID=Msa0683570-mRNA-1:exon:11422;Parent=Msa0683570-mRNA-1
chr4_4 five_prime_UTR 46181627 46181688 46181627 ID=Msa0683570-mRNA-1:five_prime_utr;Parent=Msa0683570-mRNA-1
chr4_4 CDS 46181616 46181626 46181616 ID=Msa0683570-mRNA-1:cds;Parent=Msa0683570-mRNA-1
chr4_4 CDS 46181437 46181524 46181437 ID=Msa0683570-mRNA-1:cds;Parent=Msa0683570-mRNA-1
chr4_4 CDS 46179251 46180912 46179251 ID=Msa0683570-mRNA-1:cds;Parent=Msa0683570-mRNA-1
chr4_4 three_prime_UTR 46178981 46179250 46178981 ID=Msa0683570-mRNA-1:three_prime_utr;Parent=Msa0683570-mRNA-1
Gene Sequence

>Msa0683570

ATGACAACAAGAAGTGGTTCTTCTGAAGTGGTGCCTAAGAAAGTTTCTCCGCGTGCTGTACGCCAACTGAGAACTACGACTACTCTAGATACTGACTCTAGGAAACGCCCGAGCAAAATATCTGAATTGGAATCTCAAATTTCTCAACTTCAAGATGATTTGAAGAAGGTGAAGGACCAGCTTATTTTGTCTGAATCATGCAAGAAGCAAGCTCAGCAAGACTTCGAGGAATCCAAAGAGCAACTCTTAGCCCTATCTGGAAAACTCGAAGAGTCTCAAAAGCAATATCTAGAGCTATGTGCTACTGGAGAAGCTCGCGATATCGAACTCCAGAAAATCACAGAAGAACGTGATAGCGCATGGAAGTCGGAGCTCGATGTCTCCCAACAGCATCTCTCAGTTGACTCTACTGCTTTGTCTTCTGCATTGAAGGAAATTCAGCTGCTGAAAGCACAACTTGAATTGGTAGCTACTTGTGGTAGTGTTCAAACTCAACAAGCTGAATCGGCAGATGAAGAGCTACTGAACCTAAATCAAAACTTATCAGAATCACTTTCTCAGATGGAGAACATAAAAAACCAACTCAAGAATAGCAAAGAACCTGAAACTCAGGCACAAATCTTTATTGATGAAACTTTGTTGCAACTCAAGTCTGCGAAAAGAACCGTCGAGATTCTAAGGGATGACGTTGCGAGAGACGTAGATGGCTGCAACTCCATTGCTTTGGAGTTGGAACATTCTAGAGCAAGGGTGAACACGCTAGCAACACTTGTTAGCAAATTTAAGACACGCATCAACGATAATGAATCAATTCACTCTGTTCAAAATCTTGTGGATGATTGTAAATTCGAGAAGGAAAGTGAAATATTGAGAAATAGAGAGGATCCTAATCATATTGAAGAAGAGATTTGTTCTTTGAAGTCTGAGATTGGACGGCTGAGATCTGCTGTAGAGACTGCCGAGACTAAATATCAAGAACAACAGATTCAAAGCACAGTGCAAATCAGCAATGCGTACGAGTTGATGGAGCAGATAAAATCGGAATCAGGCCAGAGACAATGTGAGTTGGAGGCTGAATTACAAAGAAAGAAAACTGATATTGAAGAGTTGAAGGCTAATCTAATGGACAAGGAAACCGAGTTGCAAGGTATCATGGAAGAGAATGAGAATTTAAATTCGAAGCTTGAAAAGAATATGTCATCACAAAATGAACATGGACTTCAAAAGGAACTCAAAAGATTGGAAGAACGTGTTGTTGAATTGAAAGCTGATATGATGGATAAAGAAACAACGTTGCAAAGCATATCCGAAGAGAACGAGATGCTGAAGATGAAAATCAACAAGAGTTGCTTGGATGACAGTAAAGTGAGAGAGGAAATAGAGAAAGCCGAGGCTGCAAAACGCGAGGCGGTTACGAAACTCGGGATTGTGATGGAGGAAGCAGACAGAAGCAACCGTAAAGTGGCGAGGGTGACCGAGCAGTTAGAAGCAGCACAAGTGGCAAGCTCCGAAATGGAAAGCGAACTAAGAAGGCTTAAGGTACAGTCTGATCAATGGAGGAAGGCTGCAGAGGCAGCTGCTGCTATGATTTCGGCAGGGAACAATGGGAAGCTTACTGAGAGATCTGTGTCTTTGGACAATAATAATACCTATAAGTATTCACCTAATTATGCTGAAGATGTTGATGATGATTTCCAGAGAAAGAAAAATGGTAACATGCTGAAGAAGTTTGGAGTCTTATGGAAGAAGCCTCAAAAATAG

Protein sequence

>Msa0683570

MTTRSGSSEVVPKKVSPRAVRQLRTTTTLDTDSRKRPSKISELESQISQLQDDLKKVKDQLILSESCKKQAQQDFEESKEQLLALSGKLEESQKQYLELCATGEARDIELQKITEERDSAWKSELDVSQQHLSVDSTALSSALKEIQLLKAQLELVATCGSVQTQQAESADEELLNLNQNLSESLSQMENIKNQLKNSKEPETQAQIFIDETLLQLKSAKRTVEILRDDVARDVDGCNSIALELEHSRARVNTLATLVSKFKTRINDNESIHSVQNLVDDCKFEKESEILRNREDPNHIEEEICSLKSEIGRLRSAVETAETKYQEQQIQSTVQISNAYELMEQIKSESGQRQCELEAELQRKKTDIEELKANLMDKETELQGIMEENENLNSKLEKNMSSQNEHGLQKELKRLEERVVELKADMMDKETTLQSISEENEMLKMKINKSCLDDSKVREEIEKAEAAKREAVTKLGIVMEEADRSNRKVARVTEQLEAAQVASSEMESELRRLKVQSDQWRKAAEAAAAMISAGNNGKLTERSVSLDNNNTYKYSPNYAEDVDDDFQRKKNGNMLKKFGVLWKKPQK*