Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090280 | XP_013470195.1 | 99.244 | 397 | 3 | 0 | 1 | 397 | 1 | 397 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090280 | sp|Q84L31|RD23C_ARATH | 69.930 | 429 | 86 | 8 | 1 | 396 | 1 | 419 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090280 | A0A072VS14 | 99.244 | 397 | 3 | 0 | 1 | 397 | 1 | 397 | 0.0 | 796 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa0090280 | 0.801860 | 7.377847e-49 | -8.615850e-47 |
| Msa0058340 | Msa0090280 | -0.818085 | 2.355593e-52 | -8.615850e-47 |
| Msa0089150 | Msa0090280 | 0.829531 | 4.885879e-55 | -8.615850e-47 |
| Msa0090280 | Msa0101810 | 0.860039 | 2.726533e-63 | -8.615850e-47 |
| Msa0090280 | Msa0102750 | -0.812794 | 3.543071e-51 | -8.615850e-47 |
| Msa0090280 | Msa0133980 | 0.811086 | 8.344836e-51 | -8.615850e-47 |
| Msa0090280 | Msa0137660 | 0.871955 | 4.606154e-67 | -8.615850e-47 |
| Msa0090280 | Msa0151950 | -0.801933 | 7.127291e-49 | -8.615850e-47 |
| Msa0090280 | Msa0182750 | 0.878441 | 2.801496e-69 | -8.615850e-47 |
| Msa0090280 | Msa0216880 | -0.858124 | 1.021885e-62 | -8.615850e-47 |
| Msa0090280 | Msa0242700 | 0.804515 | 2.082093e-49 | -8.615850e-47 |
| Msa0090280 | Msa0243930 | -0.800708 | 1.269904e-48 | -8.615850e-47 |
| Msa0090280 | Msa0260820 | 0.811701 | 6.137130e-51 | -8.615850e-47 |
| Msa0090280 | Msa0266000 | 0.844264 | 8.417538e-59 | -8.615850e-47 |
| Msa0090280 | Msa0282590 | -0.825505 | 4.520421e-54 | -8.615850e-47 |
| Msa0090280 | Msa0299200 | -0.802412 | 5.679706e-49 | -8.615850e-47 |
| Msa0090280 | Msa0308420 | -0.800896 | 1.162138e-48 | -8.615850e-47 |
| Msa0090280 | Msa0313990 | -0.801318 | 9.526628e-49 | -8.615850e-47 |
| Msa0090280 | Msa0356890 | 0.805074 | 1.591132e-49 | -8.615850e-47 |
| Msa0090280 | Msa0371420 | 0.800530 | 1.380497e-48 | -8.615850e-47 |
| Msa0090280 | Msa0436370 | -0.801385 | 9.232314e-49 | -8.615850e-47 |
| Msa0090280 | Msa0436900 | -0.803697 | 3.079768e-49 | -8.615850e-47 |
| Msa0090280 | Msa0448550 | 0.831510 | 1.602629e-55 | -8.615850e-47 |
| Msa0090280 | Msa0465680 | 0.816364 | 5.746054e-52 | -8.615850e-47 |
| Msa0090280 | Msa0492880 | -0.802015 | 6.855059e-49 | -8.615850e-47 |
| Msa0090280 | Msa0548280 | 0.807775 | 4.286008e-50 | -8.615850e-47 |
| Msa0090280 | Msa0566500 | 0.802021 | 6.836070e-49 | -8.615850e-47 |
| Msa0090280 | Msa0569020 | -0.800603 | 1.333937e-48 | -8.615850e-47 |
| Msa0090280 | Msa0569370 | -0.804731 | 1.876308e-49 | -8.615850e-47 |
| Msa0090280 | Msa0572480 | -0.802353 | 5.839737e-49 | -8.615850e-47 |
| Msa0090280 | Msa0602530 | 0.811895 | 5.568644e-51 | -8.615850e-47 |
| Msa0090280 | Msa0621890 | -0.811893 | 5.575578e-51 | -8.615850e-47 |
| Msa0090280 | Msa0658570 | -0.805822 | 1.108800e-49 | -8.615850e-47 |
| Msa0090280 | Msa0659510 | -0.815069 | 1.116638e-51 | -8.615850e-47 |
| Msa0090280 | Msa0683350 | 0.830284 | 3.201877e-55 | -8.615850e-47 |
| Msa0090280 | Msa0703490 | -0.803250 | 3.812703e-49 | -8.615850e-47 |
| Msa0090280 | Msa0715720 | -0.801424 | 9.062459e-49 | -8.615850e-47 |
| Msa0090280 | Msa0719490 | 0.857528 | 1.535429e-62 | -8.615850e-47 |
| Msa0090280 | Msa0756630 | 0.816235 | 6.139050e-52 | -8.615850e-47 |
| Msa0090280 | Msa0802470 | 0.831356 | 1.748449e-55 | -8.615850e-47 |
| Msa0090280 | Msa0802860 | -0.803683 | 3.100493e-49 | -8.615850e-47 |
| Msa0090280 | Msa0843780 | 0.805487 | 1.303701e-49 | -8.615850e-47 |
| Msa0090280 | Msa0867890 | -0.802931 | 4.439607e-49 | -8.615850e-47 |
| Msa0090280 | Msa0870530 | -0.804885 | 1.742807e-49 | -8.615850e-47 |
| Msa0090280 | Msa0876850 | 0.812787 | 3.556595e-51 | -8.615850e-47 |
| Msa0090280 | Msa0891040 | -0.817629 | 2.986220e-52 | -8.615850e-47 |
| Msa0090280 | Msa0900200 | -0.845938 | 2.972162e-59 | -8.615850e-47 |
| Msa0090280 | Msa0921630 | -0.814951 | 1.186252e-51 | -8.615850e-47 |
| Msa0090280 | Msa0965520 | -0.847504 | 1.109326e-59 | -8.615850e-47 |
| Msa0090280 | Msa0977180 | 0.816769 | 4.661442e-52 | -8.615850e-47 |
| Msa0090280 | Msa0981010 | -0.806388 | 8.429114e-50 | -8.615850e-47 |
| Msa0090280 | Msa1000020 | -0.811063 | 8.445081e-51 | -8.615850e-47 |
| Msa0090280 | Msa1008490 | -0.815906 | 7.269720e-52 | -8.615850e-47 |
| Msa0090280 | Msa1009000 | -0.811672 | 6.226439e-51 | -8.615850e-47 |
| Msa0090280 | Msa1035310 | -0.814699 | 1.348893e-51 | -8.615850e-47 |
| Msa0090280 | Msa1037700 | 0.802293 | 6.009547e-49 | -8.615850e-47 |
| Msa0090280 | Msa1038180 | -0.801292 | 9.646626e-49 | -8.615850e-47 |
| Msa0090280 | Msa1041730 | -0.828167 | 1.044859e-54 | -8.615850e-47 |
| Msa0090280 | Msa1068200 | 0.835830 | 1.335449e-56 | -8.615850e-47 |
| Msa0090280 | Msa1075220 | 0.807503 | 4.895812e-50 | -8.615850e-47 |
| Msa0090280 | Msa1080160 | -0.813728 | 2.210347e-51 | -8.615850e-47 |
| Msa0090280 | Msa1083410 | -0.828938 | 6.805652e-55 | -8.615850e-47 |
| Msa0090280 | Msa1098560 | -0.843755 | 1.152442e-58 | -8.615850e-47 |
| Msa0090280 | Msa1116440 | -0.810457 | 1.141626e-50 | -8.615850e-47 |
| Msa0090280 | Msa1125080 | -0.800647 | 1.306635e-48 | -8.615850e-47 |
| Msa0090280 | Msa1130270 | 0.804923 | 1.711241e-49 | -8.615850e-47 |
| Msa0090280 | Msa1156340 | 0.825388 | 4.817968e-54 | -8.615850e-47 |
| Msa0090280 | Msa1167220 | -0.826890 | 2.115986e-54 | -8.615850e-47 |
| Msa0090280 | Msa1209560 | -0.821002 | 5.088421e-53 | -8.615850e-47 |
| Msa0090280 | Msa1214880 | -0.825315 | 5.013603e-54 | -8.615850e-47 |
| Msa0090280 | Msa1217900 | 0.826715 | 2.329840e-54 | -8.615850e-47 |
| Msa0090280 | Msa1246040 | -0.831662 | 1.469801e-55 | -8.615850e-47 |
| Msa0090280 | Msa1298910 | -0.808759 | 2.644414e-50 | -8.615850e-47 |
| Msa0090280 | Msa1330530 | -0.801112 | 1.050101e-48 | -8.615850e-47 |
| Msa0090280 | Msa1331920 | -0.811131 | 8.163243e-51 | -8.615850e-47 |
| Msa0090280 | Msa1365040 | 0.809729 | 1.638674e-50 | -8.615850e-47 |
| Msa0090280 | Msa1376890 | -0.802386 | 5.749745e-49 | -8.615850e-47 |
| Msa0090280 | Msa1379850 | -0.802039 | 6.779252e-49 | -8.615850e-47 |
| Msa0090280 | Msa1416040 | 0.808015 | 3.812053e-50 | -8.615850e-47 |
| Msa0090280 | Msa1437310 | -0.800920 | 1.149131e-48 | -8.615850e-47 |
| Msa0090280 | Msa1457670 | 0.826536 | 2.570356e-54 | -8.615850e-47 |
| Msa0090280 | Msa1458390 | 0.902720 | 7.266670e-79 | -8.615850e-47 |
| Msa0090280 | Msa1461810 | 0.800401 | 1.466254e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090280 | MtrunA17_Chr1g0209971 | 99.244 | 397 | 3 | 0 | 1 | 397 | 1 | 397 | 0.0 | 796 |
| Msa0090280 | MtrunA17_Chr7g0214981 | 65.152 | 396 | 112 | 8 | 1 | 396 | 1 | 370 | 6.85e-162 | 459 |
| Msa0090280 | MtrunA17_Chr2g0334051 | 55.416 | 397 | 145 | 8 | 1 | 396 | 1 | 366 | 1.62e-142 | 410 |
| Msa0090280 | MtrunA17_Chr1g0146801 | 63.529 | 85 | 29 | 1 | 1 | 83 | 1 | 85 | 3.90e-29 | 109 |
| Msa0090280 | MtrunA17_Chr7g0226581 | 65.789 | 76 | 26 | 0 | 1 | 76 | 205 | 280 | 5.35e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090280 | AT3G02540.1 | 69.930 | 429 | 86 | 8 | 1 | 396 | 1 | 419 | 0.0 | 554 |
| Msa0090280 | AT3G02540.3 | 70.093 | 428 | 86 | 8 | 1 | 396 | 1 | 418 | 0.0 | 554 |
| Msa0090280 | AT5G38470.1 | 68.421 | 399 | 103 | 9 | 1 | 397 | 1 | 378 | 1.19e-177 | 499 |
| Msa0090280 | AT1G79650.1 | 56.281 | 398 | 145 | 9 | 1 | 396 | 1 | 371 | 2.51e-143 | 412 |
| Msa0090280 | AT1G79650.2 | 56.030 | 398 | 140 | 9 | 1 | 396 | 1 | 365 | 9.74e-143 | 410 |
| Msa0090280 | AT1G79650.4 | 54.087 | 416 | 150 | 10 | 1 | 396 | 1 | 395 | 8.52e-140 | 404 |
| Msa0090280 | AT1G16190.1 | 53.401 | 397 | 155 | 5 | 1 | 396 | 1 | 368 | 5.84e-139 | 401 |
| Msa0090280 | AT5G38470.2 | 66.265 | 332 | 91 | 8 | 1 | 330 | 1 | 313 | 9.45e-134 | 386 |
| Msa0090280 | AT1G16190.2 | 52.547 | 373 | 147 | 5 | 25 | 396 | 2 | 345 | 6.27e-126 | 367 |
| Msa0090280 | AT1G79650.3 | 52.261 | 398 | 141 | 10 | 1 | 396 | 1 | 351 | 1.65e-125 | 366 |
| Msa0090280 | AT3G02540.2 | 63.430 | 309 | 73 | 6 | 1 | 279 | 1 | 299 | 2.70e-115 | 338 |
| Msa0090280 | AT5G16090.1 | 60.526 | 76 | 30 | 0 | 1 | 76 | 1 | 76 | 1.04e-23 | 97.1 |
| Msa0090280 | AT5G16090.1 | 50.495 | 101 | 47 | 2 | 292 | 392 | 74 | 171 | 7.99e-23 | 94.7 |
Find 160 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAACTAGTAGCATATTT+TGG | 0.123261 | 1_2:-72160867 | Msa0090280:five_prime_UTR |
| CCTCCATAGGTTCGTTTATC+AGG | 0.249506 | 1_2:+72157715 | None:intergenic |
| TGCTGGAGCTTCAGCTTGTT+CGG | 0.259679 | 1_2:+72158312 | None:intergenic |
| GCAGCACCAGCACCAATATT+TGG | 0.271370 | 1_2:+72158078 | None:intergenic |
| CACGCGTTACTTGCGGGATT+GGG | 0.318808 | 1_2:+72160911 | None:intergenic |
| ACTCATGCATGTGGTCTAAA+AGG | 0.325713 | 1_2:+72156985 | None:intergenic |
| TCACGCGTTACTTGCGGGAT+TGG | 0.326224 | 1_2:+72160910 | None:intergenic |
| AGGGAAGGTTCTGATGTCTA+TGG | 0.340684 | 1_2:-72158687 | Msa0090280:CDS |
| ATGCTTTAGGAACAACCTAT+TGG | 0.341168 | 1_2:-72157555 | Msa0090280:intron |
| AGTTCAACAAATCCTAGATA+TGG | 0.341539 | 1_2:-72158619 | Msa0090280:CDS |
| GATCTTCACGCGTTACTTGC+GGG | 0.343331 | 1_2:+72160905 | None:intergenic |
| TGCTGCTGGTGCCGGTTCTC+TGG | 0.344680 | 1_2:-72158061 | Msa0090280:CDS |
| TTCACAGGTTGTGCACTTGC+AGG | 0.353383 | 1_2:+72158277 | None:intergenic |
| TGCTTTAGGAACAACCTATT+GGG | 0.371188 | 1_2:-72157554 | Msa0090280:intron |
| AATATTGGTGCTGGTGCTGC+TGG | 0.379034 | 1_2:-72158075 | Msa0090280:CDS |
| GGAGCTGCAGCTGCAGCCTC+AGG | 0.380645 | 1_2:+72158253 | None:intergenic |
| CTCATCTTATGAGATTGATT+CGG | 0.386341 | 1_2:-72157761 | Msa0090280:CDS |
| TCATCTTATGAGATTGATTC+GGG | 0.386880 | 1_2:-72157760 | Msa0090280:CDS |
| TTCAATAGCTTGGCGCTCCT+CGG | 0.390524 | 1_2:+72157490 | None:intergenic |
| TTACAGGGCCTGCCAAATAT+TGG | 0.393136 | 1_2:-72158090 | Msa0090280:intron |
| GAGATTGATTCGGGATCATC+AGG | 0.398560 | 1_2:-72157751 | Msa0090280:CDS |
| AAATATTCAACCGCCCTCTC+AGG | 0.399566 | 1_2:+72158537 | None:intergenic |
| TGGGCAGGCTGCATCTAATC+TGG | 0.400887 | 1_2:-72158667 | Msa0090280:CDS |
| GCTGGAGCTTCAGCTTGTTC+GGG | 0.405755 | 1_2:+72158313 | None:intergenic |
| GGCAAATCCACAAATATTGC+AGG | 0.411244 | 1_2:-72157888 | Msa0090280:intron |
| AAGAAAACCTGCAATATTTG+TGG | 0.413342 | 1_2:+72157881 | None:intergenic |
| GTAGCAGTTGCCGAGGATAT+AGG | 0.416272 | 1_2:+72158846 | None:intergenic |
| TGGGAGGAGGAAGCTGGGAT+AGG | 0.427311 | 1_2:-72158599 | Msa0090280:CDS |
| CTTATACTTGGTGTTAAATG+AGG | 0.430469 | 1_2:-72156883 | Msa0090280:three_prime_UTR |
| AGGTCTAGAGGATTAGCATT+AGG | 0.432634 | 1_2:+72158193 | None:intergenic |
| TTAGGTCCACTTGAGGTAAC+AGG | 0.432965 | 1_2:+72158211 | None:intergenic |
| CCAAGTATAAGAAATTTAAA+AGG | 0.434631 | 1_2:+72156895 | None:intergenic |
| ATAGGAGCAGGAGCTGGAGC+TGG | 0.438364 | 1_2:+72158864 | None:intergenic |
| TAGCCTCGAAATTCGAAACT+AGG | 0.438524 | 1_2:+72160746 | None:intergenic |
| CAGCAGCCATCTGTCCCAAT+AGG | 0.439096 | 1_2:+72157540 | None:intergenic |
| GGTGCTGGTGCTGCTGGTGC+CGG | 0.439464 | 1_2:-72158069 | Msa0090280:CDS |
| TAGATATGGGAGGAGGAAGC+TGG | 0.440681 | 1_2:-72158605 | Msa0090280:CDS |
| ATCCCTAGTTTCGAATTTCG+AGG | 0.442894 | 1_2:-72160749 | Msa0090280:five_prime_UTR |
| CACGGTGCCGCAGTTGCAGC+AGG | 0.444802 | 1_2:+72159026 | None:intergenic |
| GCACCATAGCTCGCAATGCT+TGG | 0.445098 | 1_2:+72157912 | None:intergenic |
| TTTGCCAAGCTCTTGTAGCA+TGG | 0.451224 | 1_2:+72157791 | None:intergenic |
| GCTGCATCTAATCTGGTTGC+CGG | 0.462863 | 1_2:-72158660 | Msa0090280:CDS |
| CATTGTGATCATGCTTTCAA+AGG | 0.464553 | 1_2:-72159681 | Msa0090280:intron |
| AACTTACACGTTCAATAGCT+TGG | 0.465361 | 1_2:+72157480 | None:intergenic |
| CTTATTGCAGCTTGAAGCAA+TGG | 0.466176 | 1_2:-72157078 | Msa0090280:intron |
| GCAGGCGCTCGGGACACTGC+TGG | 0.466866 | 1_2:+72158295 | None:intergenic |
| TCAATAGCTTGGCGCTCCTC+GGG | 0.468475 | 1_2:+72157491 | None:intergenic |
| CAGCCCATGCTACAAGAGCT+TGG | 0.469143 | 1_2:-72157795 | Msa0090280:CDS |
| AATTTCGAGGCTATTCTTTG+CGG | 0.469392 | 1_2:-72160736 | Msa0090280:five_prime_UTR |
| AGCTTCCTCCTCCCATATCT+AGG | 0.469763 | 1_2:+72158607 | None:intergenic |
| CGCCCTCTCAGGGTTATTGA+AGG | 0.470824 | 1_2:+72158548 | None:intergenic |
| GAAGGTGCAGCAACAGATGC+AGG | 0.472270 | 1_2:+72158888 | None:intergenic |
| GTTCAACAAATCCTAGATAT+GGG | 0.475757 | 1_2:-72158618 | Msa0090280:CDS |
| GAACCTATGGAGGGCGGAGA+AGG | 0.477244 | 1_2:-72157705 | Msa0090280:CDS |
| CCTGCTCCTGTTACCTCAAG+TGG | 0.477887 | 1_2:-72158217 | Msa0090280:CDS |
| CGAAGTCACGCCACAAGACT+CGG | 0.479179 | 1_2:-72160660 | Msa0090280:intron |
| TTGTGCACTTGCAGGCGCTC+GGG | 0.479546 | 1_2:+72158285 | None:intergenic |
| GGAAATGAGAAGGTCATGTA+AGG | 0.481331 | 1_2:+72156790 | None:intergenic |
| GTTGTGCACTTGCAGGCGCT+CGG | 0.483214 | 1_2:+72158284 | None:intergenic |
| AGTAAGCCCGCGTCTGGTGA+AGG | 0.483949 | 1_2:-72159281 | Msa0090280:CDS |
| CAGCAAATGCTTATTCATCA+AGG | 0.483953 | 1_2:-72159761 | Msa0090280:CDS |
| TTGCCAAGCTCTTGTAGCAT+GGG | 0.484703 | 1_2:+72157792 | None:intergenic |
| TGATCTTCACGCGTTACTTG+CGG | 0.487918 | 1_2:+72160904 | None:intergenic |
| GGGAGGAGGAAGCTGGGATA+GGG | 0.488129 | 1_2:-72158598 | Msa0090280:CDS |
| GCAGGAGCTGGAGCTGGGGA+AGG | 0.489970 | 1_2:+72158870 | None:intergenic |
| TGATCGTGCTATAGTATTGG+AGG | 0.491124 | 1_2:-72157051 | Msa0090280:CDS |
| CACCAGCACCAATATTTGGC+AGG | 0.492935 | 1_2:+72158082 | None:intergenic |
| CACCCTTCTCCGCCCTCCAT+AGG | 0.495258 | 1_2:+72157702 | None:intergenic |
| AGGTTCTGATGTCTATGGGC+AGG | 0.496402 | 1_2:-72158682 | Msa0090280:CDS |
| AGGTAGGCTATATATAAACT+TGG | 0.498863 | 1_2:+72156667 | None:intergenic |
| TAGGAGCAGGAGCTGGAGCT+GGG | 0.499444 | 1_2:+72158865 | None:intergenic |
| GCGTAGAAAATCCAGAGAAC+CGG | 0.500402 | 1_2:+72158050 | None:intergenic |
| GCAAATGACTATGTATATGA+AGG | 0.502025 | 1_2:+72156752 | None:intergenic |
| ATAAGCATTTGCTGTGCAGC+AGG | 0.503524 | 1_2:+72159770 | None:intergenic |
| TCGCCTGATAAACGAACCTA+TGG | 0.506239 | 1_2:-72157718 | Msa0090280:CDS |
| CCACTTGAGGTAACAGGAGC+AGG | 0.508160 | 1_2:+72158217 | None:intergenic |
| TGGCAGAGTAAGCCCGCGTC+TGG | 0.509702 | 1_2:-72159287 | Msa0090280:intron |
| AGCTCCTGCTCCTATATCCT+CGG | 0.510256 | 1_2:-72158856 | Msa0090280:CDS |
| TCTCAAGTTGACTGTGGACA+AGG | 0.521567 | 1_2:-72156839 | Msa0090280:three_prime_UTR |
| AGCCTCGAAATTCGAAACTA+GGG | 0.521769 | 1_2:+72160747 | None:intergenic |
| TCTGGTTGCCGGTAGCAACT+TGG | 0.522344 | 1_2:-72158649 | Msa0090280:CDS |
| GGTTGCCGGTAGCAACTTGG+AGG | 0.526533 | 1_2:-72158646 | Msa0090280:CDS |
| TCCTCTAGACCTCTTTCCCC+AGG | 0.527390 | 1_2:-72158182 | Msa0090280:intron |
| CGACTGTTACCTGGGGAAAG+AGG | 0.528080 | 1_2:+72158173 | None:intergenic |
| GAAGGATGGTACCACCTTGG+AGG | 0.528142 | 1_2:-72159729 | Msa0090280:CDS |
| CCTGATAAACGAACCTATGG+AGG | 0.530397 | 1_2:-72157715 | Msa0090280:CDS |
| CAAACTTCTCTCACCTTCGC+TGG | 0.531589 | 1_2:+72159236 | None:intergenic |
| TGTTCCCTCCAAGTTGCTAC+CGG | 0.534141 | 1_2:+72158641 | None:intergenic |
| TTATTGCAGCTTGAAGCAAT+GGG | 0.537260 | 1_2:-72157077 | Msa0090280:intron |
| TCTCATTTCCTCCCCATCGA+GGG | 0.537788 | 1_2:-72156777 | Msa0090280:three_prime_UTR |
| CATGTGGTCTAAAAGGTAGT+TGG | 0.538667 | 1_2:+72156992 | None:intergenic |
| ATAGACATCTACACCTTGAA+CGG | 0.540608 | 1_2:+72159793 | None:intergenic |
| GTTCCAAGCATTGCGAGCTA+TGG | 0.544462 | 1_2:-72157915 | Msa0090280:CDS |
| GGAGCAGGCTGAGCTGCTTG+TGG | 0.545404 | 1_2:+72158232 | None:intergenic |
| TATATGAAGGAGCCCTCGAT+GGG | 0.547845 | 1_2:+72156765 | None:intergenic |
| TTTGCGGCGATCGAAGATGA+AGG | 0.550057 | 1_2:-72160720 | Msa0090280:exon |
| GGGAAGGTTCTGATGTCTAT+GGG | 0.550980 | 1_2:-72158686 | Msa0090280:CDS |
| TAGGAGCAGCACTTGTCTGT+GGG | 0.552599 | 1_2:+72159084 | None:intergenic |
| GCTGCAGCCTCAGGATTCAC+AGG | 0.553492 | 1_2:+72158262 | None:intergenic |
| AGCATTGCGAGCTATGGTGC+AGG | 0.553590 | 1_2:-72157909 | Msa0090280:CDS |
| CTATTGGGACAGATGGCTGC+TGG | 0.554126 | 1_2:-72157539 | Msa0090280:CDS |
| AATATTCAACCGCCCTCTCA+GGG | 0.556278 | 1_2:+72158538 | None:intergenic |
| TCAAGCTCCTGCTGCAACTG+CGG | 0.558262 | 1_2:-72159033 | Msa0090280:CDS |
| GAGGATATAGGAGCAGGAGC+TGG | 0.559984 | 1_2:+72158858 | None:intergenic |
| GTTGCCGAGGATATAGGAGC+AGG | 0.561804 | 1_2:+72158852 | None:intergenic |
| GGCCTGCCAAATATTGGTGC+TGG | 0.565166 | 1_2:-72158084 | Msa0090280:CDS |
| TAATTTGGAAATCATTGGAA+AGG | 0.565168 | 1_2:+72156945 | None:intergenic |
| TTTGAAGGATGGTACCACCT+TGG | 0.566393 | 1_2:-72159732 | Msa0090280:CDS |
| GTAGGAGCAGCACTTGTCTG+TGG | 0.567111 | 1_2:+72159083 | None:intergenic |
| AGATATGGGAGGAGGAAGCT+GGG | 0.572319 | 1_2:-72158604 | Msa0090280:CDS |
| ATGTAAGGGCGGCAATGAGA+AGG | 0.572922 | 1_2:+72156805 | None:intergenic |
| TTCTCATTTCCTCCCCATCG+AGG | 0.575254 | 1_2:-72156778 | Msa0090280:three_prime_UTR |
| GTAAGCCCGCGTCTGGTGAA+GGG | 0.575627 | 1_2:-72159280 | Msa0090280:CDS |
| GGTAGGCTATATATAAACTT+GGG | 0.576843 | 1_2:+72156668 | None:intergenic |
| GGATAAAAGAAAGAGTGAAA+AGG | 0.577620 | 1_2:+72160792 | None:intergenic |
| TAGGTTCGTTTATCAGGCGA+AGG | 0.578774 | 1_2:+72157721 | None:intergenic |
| GAACAACCTATTGGGACAGA+TGG | 0.579220 | 1_2:-72157546 | Msa0090280:CDS |
| GTGGTCTAAAAGGTAGTTGG+CGG | 0.579276 | 1_2:+72156995 | None:intergenic |
| TTCAAATGCTCCTCCAGCGA+AGG | 0.580319 | 1_2:-72159249 | Msa0090280:intron |
| CAAATCCTAGATATGGGAGG+AGG | 0.580761 | 1_2:-72158612 | Msa0090280:CDS |
| AACCTATGGAGGGCGGAGAA+GGG | 0.586771 | 1_2:-72157704 | Msa0090280:intron |
| AGGAGCAGGAGCTGGAGCTG+GGG | 0.587268 | 1_2:+72158866 | None:intergenic |
| ACCTGGGGAAAGAGGTCTAG+AGG | 0.592015 | 1_2:+72158181 | None:intergenic |
| GTATATGAAGGAGCCCTCGA+TGG | 0.597147 | 1_2:+72156764 | None:intergenic |
| GTCAAATTACGCTTGTCAGA+AGG | 0.597629 | 1_2:+72156704 | None:intergenic |
| CTTGAGGTGAAACAGACACT+GGG | 0.598069 | 1_2:+72159051 | None:intergenic |
| AGTAGACCCTTCACCAGACG+CGG | 0.598769 | 1_2:+72159274 | None:intergenic |
| AGCAAATGCTTATTCATCAA+GGG | 0.601247 | 1_2:-72159760 | Msa0090280:CDS |
| TGAAGGAGCCCTCGATGGGG+AGG | 0.605340 | 1_2:+72156769 | None:intergenic |
| CGAATCAATCTCATAAGATG+AGG | 0.606271 | 1_2:+72157762 | None:intergenic |
| GCTTGAGGTGAAACAGACAC+TGG | 0.613953 | 1_2:+72159050 | None:intergenic |
| TGCCTTCAATAACCCTGAGA+GGG | 0.615258 | 1_2:-72158550 | Msa0090280:CDS |
| GCAGTTGCAGCAGGAGCTTG+AGG | 0.616444 | 1_2:+72159035 | None:intergenic |
| CTCAAGTTGACTGTGGACAA+GGG | 0.617111 | 1_2:-72156838 | Msa0090280:three_prime_UTR |
| TTCGAAGACCAAAACGACGA+CGG | 0.618865 | 1_2:+72160771 | None:intergenic |
| ACTTCTCTCACCTTCGCTGG+AGG | 0.619890 | 1_2:+72159239 | None:intergenic |
| CTGATAAACGAACCTATGGA+GGG | 0.626493 | 1_2:-72157714 | Msa0090280:CDS |
| ATTAGCATTAGGTCCACTTG+AGG | 0.629093 | 1_2:+72158204 | None:intergenic |
| TATTTACGTAGCAGTTGCCG+AGG | 0.633237 | 1_2:+72158839 | None:intergenic |
| CTTCAATAACCCTGAGAGGG+CGG | 0.633530 | 1_2:-72158547 | Msa0090280:CDS |
| GAGGTGAAACAGACACTGGG+GGG | 0.636174 | 1_2:+72159054 | None:intergenic |
| TGAGGGTAAACCGAGTCTTG+TGG | 0.637133 | 1_2:+72160650 | None:intergenic |
| AGGAGCAGCACTTGTCTGTG+GGG | 0.638148 | 1_2:+72159085 | None:intergenic |
| GTTCGTCGAACTCATGCATG+TGG | 0.641221 | 1_2:+72156976 | None:intergenic |
| ACAATCTCTCAAGTTGACTG+TGG | 0.650014 | 1_2:-72156845 | Msa0090280:three_prime_UTR |
| CTGCCTTCAATAACCCTGAG+AGG | 0.652037 | 1_2:-72158551 | Msa0090280:CDS |
| GAAATGAGAAGGTCATGTAA+GGG | 0.654393 | 1_2:+72156791 | None:intergenic |
| ATCAGTAACTGTCACACCCG+AGG | 0.657070 | 1_2:-72157507 | Msa0090280:CDS |
| TGAGGTGAAACAGACACTGG+GGG | 0.659088 | 1_2:+72159053 | None:intergenic |
| GTAGACCCTTCACCAGACGC+GGG | 0.666940 | 1_2:+72159275 | None:intergenic |
| GGTGTGACAGTTACTGATTG+TGG | 0.672986 | 1_2:+72157512 | None:intergenic |
| GTTGCCGGTAGCAACTTGGA+GGG | 0.675122 | 1_2:-72158645 | Msa0090280:CDS |
| ATGAGAAGGTCATGTAAGGG+CGG | 0.678661 | 1_2:+72156794 | None:intergenic |
| TCGATGGGGAGGAAATGAGA+AGG | 0.679006 | 1_2:+72156780 | None:intergenic |
| CAACAAATCCTAGATATGGG+AGG | 0.680457 | 1_2:-72158615 | Msa0090280:CDS |
| AGGTGAAACAGACACTGGGG+GGG | 0.685526 | 1_2:+72159055 | None:intergenic |
| ATAAACGAACCTATGGAGGG+CGG | 0.697015 | 1_2:-72157711 | Msa0090280:CDS |
| TGCACAACCTGTGAATCCTG+AGG | 0.701039 | 1_2:-72158269 | Msa0090280:CDS |
| TTGAGGTGAAACAGACACTG+GGG | 0.743648 | 1_2:+72159052 | None:intergenic |
| ATATGAAGGAGCCCTCGATG+GGG | 0.744643 | 1_2:+72156766 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTATTTTTGAGTTT+TGG | - | chr1_2:72158065-72158084 | Msa0090280:CDS | 10.0% |
| !!! | AGAACTTTTTTTTTAATATA+TGG | - | chr1_2:72158292-72158311 | Msa0090280:CDS | 10.0% |
| !! | ATTTAAATAAAAAATTAACC+AGG | + | chr1_2:72159236-72159255 | None:intergenic | 10.0% |
| !! | AAATAAAAAAAAAATTCTTC+TGG | - | chr1_2:72159466-72159485 | Msa0090280:intron | 10.0% |
| !! | AATAAAAAAAAAATTCTTCT+GGG | - | chr1_2:72159467-72159486 | Msa0090280:intron | 10.0% |
| !!! | TTATAATTGTTTTTGTATAT+TGG | - | chr1_2:72159953-72159972 | Msa0090280:intron | 10.0% |
| !!! | ATAATTTTGTACATTGAAAA+TGG | - | chr1_2:72158826-72158845 | Msa0090280:intron | 15.0% |
| !!! | AAGATTAAATTTTTTGAAAC+AGG | - | chr1_2:72158892-72158911 | Msa0090280:CDS | 15.0% |
| !!! | AGATTAAATTTTTTGAAACA+GGG | - | chr1_2:72158893-72158912 | Msa0090280:intron | 15.0% |
| !! | AAAATACAATAAATAGGTAA+CGG | + | chr1_2:72160247-72160266 | None:intergenic | 15.0% |
| !!! | ACATTATACATTTGTTAATT+AGG | - | chr1_2:72160320-72160339 | Msa0090280:intron | 15.0% |
| !! | AAAAATAATTTGGAAATCAT+TGG | + | chr1_2:72160662-72160681 | None:intergenic | 15.0% |
| !! | AAAGATAACGAAAAATAATT+TGG | + | chr1_2:72160672-72160691 | None:intergenic | 15.0% |
| !!! | AATAAACTAGTAGCATATTT+TGG | - | chr1_2:72156732-72156751 | Msa0090280:three_prime_UTR | 20.0% |
| !!! | ATAAACTAGTAGCATATTTT+GGG | - | chr1_2:72156733-72156752 | Msa0090280:three_prime_UTR | 20.0% |
| !! | ATTTGATTGTTAGTTAAGTT+AGG | - | chr1_2:72157080-72157099 | Msa0090280:intron | 20.0% |
| !! | TTTGATTGTTAGTTAAGTTA+GGG | - | chr1_2:72157081-72157100 | Msa0090280:intron | 20.0% |
| !!! | TTCTGAATTATGATTTTTAG+TGG | - | chr1_2:72157250-72157269 | Msa0090280:intron | 20.0% |
| !!! | TCTGAATTATGATTTTTAGT+GGG | - | chr1_2:72157251-72157270 | Msa0090280:intron | 20.0% |
| !!! | GAATTTTGTTGTTAAGTTTT+TGG | - | chr1_2:72157273-72157292 | Msa0090280:intron | 20.0% |
| !! | ATATAGCAGAAAAACAATTA+TGG | + | chr1_2:72157727-72157746 | None:intergenic | 20.0% |
| !!! | TATTATTTTTGAGTTTTGGT+TGG | - | chr1_2:72158069-72158088 | Msa0090280:CDS | 20.0% |
| !! | ATAGAATATAACAAGCATTA+AGG | + | chr1_2:72158257-72158276 | None:intergenic | 20.0% |
| !!! | AATGCTTGTTATATTCTATT+CGG | - | chr1_2:72158258-72158277 | Msa0090280:CDS | 20.0% |
| !!! | TTTTTTGTTGTTATATTTGC+TGG | - | chr1_2:72158417-72158436 | Msa0090280:intron | 20.0% |
| !!! | TTTTTGTTGTTATATTTGCT+GGG | - | chr1_2:72158418-72158437 | Msa0090280:intron | 20.0% |
| !!! | TTGAGTTGTTTAGATATATT+TGG | - | chr1_2:72158622-72158641 | Msa0090280:CDS | 20.0% |
| !! | ATTCTGTTTACTTTAATGTT+TGG | - | chr1_2:72158782-72158801 | Msa0090280:intron | 20.0% |
| !!! | TTACTTTAATGTTTGGAATT+TGG | - | chr1_2:72158789-72158808 | Msa0090280:intron | 20.0% |
| !! | AATATAAGACATAACTACTA+AGG | + | chr1_2:72159748-72159767 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTGTATATTGGAA+TGG | - | chr1_2:72159958-72159977 | Msa0090280:intron | 20.0% |
| !!! | TTGTTTTTGTATATTGGAAT+GGG | - | chr1_2:72159959-72159978 | Msa0090280:intron | 20.0% |
| !!! | ACCTATTTATTGTATTTTCT+CGG | - | chr1_2:72160249-72160268 | Msa0090280:intron | 20.0% |
| !! | TTGTTATATATTTGAGTCTT+AGG | - | chr1_2:72160403-72160422 | Msa0090280:intron | 20.0% |
| !! | AAATTACAAAATACAGAGAA+AGG | + | chr1_2:72160478-72160497 | None:intergenic | 20.0% |
| !!! | TCTGTATTTTGTAATTTATG+TGG | - | chr1_2:72160481-72160500 | Msa0090280:intron | 20.0% |
| !!! | CTGTATTTTGTAATTTATGT+GGG | - | chr1_2:72160482-72160501 | Msa0090280:intron | 20.0% |
| !! | CCAAGTATAAGAAATTTAAA+AGG | + | chr1_2:72160707-72160726 | None:intergenic | 20.0% |
| !!! | CCTTTTAAATTTCTTATACT+TGG | - | chr1_2:72160704-72160723 | Msa0090280:CDS | 20.0% |
| !! | TAAACTAGTAGCATATTTTG+GGG | - | chr1_2:72156734-72156753 | Msa0090280:three_prime_UTR | 25.0% |
| !!! | GTTGTTGATTTGAATTTTCT+TGG | - | chr1_2:72157147-72157166 | Msa0090280:intron | 25.0% |
| !!! | GTTGTTAAGTTTTTGGTTAT+TGG | - | chr1_2:72157280-72157299 | Msa0090280:intron | 25.0% |
| ! | AAAATCTCTTCATAAGTACT+AGG | - | chr1_2:72157392-72157411 | Msa0090280:intron | 25.0% |
| ! | GAGGTTAAATTCACTAAATA+AGG | + | chr1_2:72157622-72157641 | None:intergenic | 25.0% |
| !! | TTCTATATTTTTCTTGACTG+CGG | + | chr1_2:72157785-72157804 | None:intergenic | 25.0% |
| ! | AAAAATATAGAAACCGTTCA+AGG | - | chr1_2:72157793-72157812 | Msa0090280:CDS | 25.0% |
| !!! | TTTTGTTGTTATATTTGCTG+GGG | - | chr1_2:72158419-72158438 | Msa0090280:intron | 25.0% |
| ! | AACAATTATGTATTCTTTGC+AGG | - | chr1_2:72158491-72158510 | Msa0090280:intron | 25.0% |
| ! | AATCTTCATTTCAATTTGAC+AGG | - | chr1_2:72158688-72158707 | Msa0090280:CDS | 25.0% |
| ! | TAATGGAACAATCAAGATAA+TGG | + | chr1_2:72158860-72158879 | None:intergenic | 25.0% |
| !! | ATCTTTTAGCAACATAGTAA+TGG | + | chr1_2:72158877-72158896 | None:intergenic | 25.0% |
| !!! | TAAATTTTTTGAAACAGGGA+AGG | - | chr1_2:72158897-72158916 | Msa0090280:intron | 25.0% |
| ! | TTCCTATATATTACAGTTAC+CGG | - | chr1_2:72159133-72159152 | Msa0090280:intron | 25.0% |
| ! | AAGAATCATCAAGAAATAAC+AGG | + | chr1_2:72159168-72159187 | None:intergenic | 25.0% |
| !! | GATTCTTACATATCTTGTTT+CGG | - | chr1_2:72159181-72159200 | Msa0090280:intron | 25.0% |
| !!! | GTTTGAGTCTTATATGATTT+TGG | - | chr1_2:72159206-72159225 | Msa0090280:intron | 25.0% |
| ! | AAAAAAAAAATTCTTCTGGG+TGG | - | chr1_2:72159470-72159489 | Msa0090280:intron | 25.0% |
| ! | TATACTTAACTGTATGTTAC+AGG | - | chr1_2:72159493-72159512 | Msa0090280:intron | 25.0% |
| ! | ATACTTAACTGTATGTTACA+GGG | - | chr1_2:72159494-72159513 | Msa0090280:intron | 25.0% |
| ! | GCACTGAATTTATTACTTAT+AGG | - | chr1_2:72159614-72159633 | Msa0090280:intron | 25.0% |
| ! | CAAAACCTATTAAGACTATA+AGG | - | chr1_2:72160189-72160208 | Msa0090280:intron | 25.0% |
| !! | TTAGTCCTTATAGTCTTAAT+AGG | + | chr1_2:72160197-72160216 | None:intergenic | 25.0% |
| ! | TATTAAGACTATAAGGACTA+AGG | - | chr1_2:72160196-72160215 | Msa0090280:intron | 25.0% |
| ! | GTGCATAAATAGTTCAAATT+TGG | - | chr1_2:72160347-72160366 | Msa0090280:intron | 25.0% |
| ! | TTATATATTTGAGTCTTAGG+CGG | - | chr1_2:72160406-72160425 | Msa0090280:intron | 25.0% |
| !! | TATTTTGTAATTTATGTGGG+TGG | - | chr1_2:72160485-72160504 | Msa0090280:intron | 25.0% |
| ! | TAATTTGGAAATCATTGGAA+AGG | + | chr1_2:72160657-72160676 | None:intergenic | 25.0% |
| !! | TTTTTCGTTATCTTTTCTCT+CGG | - | chr1_2:72160677-72160696 | Msa0090280:CDS | 25.0% |
| GGATAAAAGAAAGAGTGAAA+AGG | + | chr1_2:72156810-72156829 | None:intergenic | 30.0% | |
| !!! | GTGTTTTTTTTTTCCCTGTT+CGG | - | chr1_2:72157108-72157127 | Msa0090280:intron | 30.0% |
| AGTCAATAATTAACCGAACA+GGG | + | chr1_2:72157124-72157143 | None:intergenic | 30.0% | |
| AAGTCAATAATTAACCGAAC+AGG | + | chr1_2:72157125-72157144 | None:intergenic | 30.0% | |
| ! | TTTAAGTTATGATTTCGACG+TGG | - | chr1_2:72157194-72157213 | Msa0090280:intron | 30.0% |
| TGTTTGGATCATTACTTTCT+AGG | - | chr1_2:72157342-72157361 | Msa0090280:intron | 30.0% | |
| CTCAATTATTGAAATTCTCG+TGG | + | chr1_2:72157493-72157512 | None:intergenic | 30.0% | |
| GGTTCAGAATAAAAACAACA+CGG | + | chr1_2:72157706-72157725 | None:intergenic | 30.0% | |
| AGCAAATGCTTATTCATCAA+GGG | - | chr1_2:72157839-72157858 | Msa0090280:intron | 30.0% | |
| !! | AATCAATGTAGTTTTCGAGA+CGG | + | chr1_2:72157968-72157987 | None:intergenic | 30.0% |
| !!! | ATTTTTGAGTTTTGGTTGGT+TGG | - | chr1_2:72158073-72158092 | Msa0090280:CDS | 30.0% |
| TTTGTCTATTTAGCCATAAC+TGG | - | chr1_2:72158180-72158199 | Msa0090280:intron | 30.0% | |
| AACATAATCAACTCCAGTTA+TGG | + | chr1_2:72158196-72158215 | None:intergenic | 30.0% | |
| ACAAGCATTAAGGAATGAAA+AGG | + | chr1_2:72158247-72158266 | None:intergenic | 30.0% | |
| ! | TGTTTTCAGTTCCTGTAAAT+GGG | + | chr1_2:72158465-72158484 | None:intergenic | 30.0% |
| AGATTCAGAGTTCATTTGAA+TGG | + | chr1_2:72158673-72158692 | None:intergenic | 30.0% | |
| AGTTCAACAAATCCTAGATA+TGG | - | chr1_2:72158980-72158999 | Msa0090280:intron | 30.0% | |
| GTTCAACAAATCCTAGATAT+GGG | - | chr1_2:72158981-72159000 | Msa0090280:intron | 30.0% | |
| AACCGGTAACTGTAATATAT+AGG | + | chr1_2:72159138-72159157 | None:intergenic | 30.0% | |
| ! | ATATATTACAGTTACCGGTT+TGG | - | chr1_2:72159138-72159157 | Msa0090280:intron | 30.0% |
| AAATAACAGGAATTCCAAAC+CGG | + | chr1_2:72159155-72159174 | None:intergenic | 30.0% | |
| AAGAAAACCTGCAATATTTG+TGG | + | chr1_2:72159721-72159740 | None:intergenic | 30.0% | |
| TGTCTTATATTCTCTTCTTG+TGG | - | chr1_2:72159757-72159776 | Msa0090280:CDS | 30.0% | |
| CTCATCTTATGAGATTGATT+CGG | - | chr1_2:72159838-72159857 | Msa0090280:intron | 30.0% | |
| ! | TCATCTTATGAGATTGATTC+GGG | - | chr1_2:72159839-72159858 | Msa0090280:intron | 30.0% |
| AGAAAATGACAGATCGATTA+AGG | + | chr1_2:72160166-72160185 | None:intergenic | 30.0% | |
| GCCGAGAAAATACAATAAAT+AGG | + | chr1_2:72160253-72160272 | None:intergenic | 30.0% | |
| AAACTCGATCAACATATGTA+GGG | + | chr1_2:72160282-72160301 | None:intergenic | 30.0% | |
| AAAACTCGATCAACATATGT+AGG | + | chr1_2:72160283-72160302 | None:intergenic | 30.0% | |
| ! | CCATATTTCTGAGAAACAAT+AGG | + | chr1_2:72160377-72160396 | None:intergenic | 30.0% |
| ! | CCTATTGTTTCTCAGAAATA+TGG | - | chr1_2:72160374-72160393 | Msa0090280:intron | 30.0% |
| ! | ATTGTTTCTCAGAAATATGG+AGG | - | chr1_2:72160377-72160396 | Msa0090280:intron | 30.0% |
| TATATATTTGAGTCTTAGGC+GGG | - | chr1_2:72160407-72160426 | Msa0090280:intron | 30.0% | |
| ! | TTTTGATCGTGCTATAGTAT+TGG | - | chr1_2:72160545-72160564 | Msa0090280:intron | 30.0% |
| TTGCAACAAAAATGAGGAAT+TGG | - | chr1_2:72160581-72160600 | Msa0090280:intron | 30.0% | |
| !! | CTTATACTTGGTGTTAAATG+AGG | - | chr1_2:72160716-72160735 | Msa0090280:exon | 30.0% |
| GCAAATGACTATGTATATGA+AGG | + | chr1_2:72160850-72160869 | None:intergenic | 30.0% | |
| AATTTCGAGGCTATTCTTTG+CGG | - | chr1_2:72156863-72156882 | Msa0090280:three_prime_UTR | 35.0% | |
| ! | GTTTTCGTCAAGACTCTTAA+AGG | - | chr1_2:72156901-72156920 | Msa0090280:three_prime_UTR | 35.0% |
| GAGTCGAAATAAGAGTTTGA+GGG | + | chr1_2:72156969-72156988 | None:intergenic | 35.0% | |
| TGAGTCGAAATAAGAGTTTG+AGG | + | chr1_2:72156970-72156989 | None:intergenic | 35.0% | |
| GTGGTATGTAGAATATGATG+TGG | - | chr1_2:72157213-72157232 | Msa0090280:intron | 35.0% | |
| GCAATGAAACTTCTGATCAA+AGG | + | chr1_2:72157453-72157472 | None:intergenic | 35.0% | |
| ! | GTGGTGTTTGATAGTTATAC+TGG | - | chr1_2:72157661-72157680 | Msa0090280:intron | 35.0% |
| ATAGACATCTACACCTTGAA+CGG | + | chr1_2:72157809-72157828 | None:intergenic | 35.0% | |
| CAGCAAATGCTTATTCATCA+AGG | - | chr1_2:72157838-72157857 | Msa0090280:intron | 35.0% | |
| !! | TCATCAAGGGAAAGTTTTGA+AGG | - | chr1_2:72157852-72157871 | Msa0090280:intron | 35.0% |
| !!! | TACTTTATTTTCCTCCAAGG+TGG | + | chr1_2:72157884-72157903 | None:intergenic | 35.0% |
| !!! | AGCTACTTTATTTTCCTCCA+AGG | + | chr1_2:72157887-72157906 | None:intergenic | 35.0% |
| CATTGTGATCATGCTTTCAA+AGG | - | chr1_2:72157918-72157937 | Msa0090280:intron | 35.0% | |
| CTGTGTTTGCGACAAAATAA+CGG | + | chr1_2:72158011-72158030 | None:intergenic | 35.0% | |
| AGATCTTAACCACTCCAAAT+TGG | + | chr1_2:72158117-72158136 | None:intergenic | 35.0% | |
| AGTTTATCCCAGCTATCTAA+GGG | - | chr1_2:72158149-72158168 | Msa0090280:intron | 35.0% | |
| GAAGGATATTACCCATTTAC+AGG | - | chr1_2:72158451-72158470 | Msa0090280:intron | 35.0% | |
| ! | CTGTTTTCAGTTCCTGTAAA+TGG | + | chr1_2:72158466-72158485 | None:intergenic | 35.0% |
| CATGTAAAACAAGTCACTCA+CGG | + | chr1_2:72158594-72158613 | None:intergenic | 35.0% | |
| !!! | TTATATGATTTTGGCTTGCC+TGG | - | chr1_2:72159215-72159234 | Msa0090280:intron | 35.0% |
| TGCAGCAATAACAAGAATCA+GGG | + | chr1_2:72159786-72159805 | None:intergenic | 35.0% | |
| CGAATCAATCTCATAAGATG+AGG | + | chr1_2:72159840-72159859 | None:intergenic | 35.0% | |
| ACTTGAAAATACCTGTCCAT+TGG | - | chr1_2:72160001-72160020 | Msa0090280:intron | 35.0% | |
| AAAGCCAAAAAGTAAGCCAA+TGG | + | chr1_2:72160020-72160039 | None:intergenic | 35.0% | |
| !! | TTTGGCTTTCAACATGCTTT+AGG | - | chr1_2:72160031-72160050 | Msa0090280:intron | 35.0% |
| !! | ATGCTTTAGGAACAACCTAT+TGG | - | chr1_2:72160044-72160063 | Msa0090280:intron | 35.0% |
| !! | TGCTTTAGGAACAACCTATT+GGG | - | chr1_2:72160045-72160064 | Msa0090280:intron | 35.0% |
| AACTTACACGTTCAATAGCT+TGG | + | chr1_2:72160122-72160141 | None:intergenic | 35.0% | |
| !! | ATGTTGATCGAGTTTTGTCT+AGG | - | chr1_2:72160287-72160306 | Msa0090280:intron | 35.0% |
| ATATATTTGAGTCTTAGGCG+GGG | - | chr1_2:72160408-72160427 | Msa0090280:intron | 35.0% | |
| AAAAATGTCCTAGAAACACC+AGG | - | chr1_2:72160443-72160462 | Msa0090280:intron | 35.0% | |
| AAAATGTCCTAGAAACACCA+GGG | - | chr1_2:72160444-72160463 | Msa0090280:intron | 35.0% | |
| TTATTGCAGCTTGAAGCAAT+GGG | - | chr1_2:72160522-72160541 | Msa0090280:intron | 35.0% | |
| CTTTGCTTGCAACAAAAATG+AGG | - | chr1_2:72160575-72160594 | Msa0090280:intron | 35.0% | |
| GAAATGAGAAGGTCATGTAA+GGG | + | chr1_2:72160811-72160830 | None:intergenic | 35.0% | |
| ! | TCTTTTATCCGTCGTCGTTT+TGG | - | chr1_2:72156820-72156839 | Msa0090280:three_prime_UTR | 40.0% |
| ATCCCTAGTTTCGAATTTCG+AGG | - | chr1_2:72156850-72156869 | Msa0090280:three_prime_UTR | 40.0% | |
| AGCCTCGAAATTCGAAACTA+GGG | + | chr1_2:72156855-72156874 | None:intergenic | 40.0% | |
| TAGCCTCGAAATTCGAAACT+AGG | + | chr1_2:72156856-72156875 | None:intergenic | 40.0% | |
| AGTTCCACATTGTCTCTGTT+TGG | - | chr1_2:72157326-72157345 | Msa0090280:intron | 40.0% | |
| TGATCCAAACAGAGACAATG+TGG | + | chr1_2:72157333-72157352 | None:intergenic | 40.0% | |
| TGGACTGTCAAAAGTGATAC+CGG | - | chr1_2:72157576-72157595 | Msa0090280:intron | 40.0% | |
| !!! | CAAGGGAAAGTTTTGAAGGA+TGG | - | chr1_2:72157856-72157875 | Msa0090280:intron | 40.0% |
| ATTGTGAAGCAGAAGTAGTC+TGG | + | chr1_2:72158046-72158065 | None:intergenic | 40.0% | |
| TGGAATCTCACATGCCAATT+TGG | - | chr1_2:72158100-72158119 | Msa0090280:intron | 40.0% | |
| CAGTTTATCCCAGCTATCTA+AGG | - | chr1_2:72158148-72158167 | Msa0090280:intron | 40.0% | |
| TTGCTGGGGTATAGTAAAGA+AGG | - | chr1_2:72158433-72158452 | Msa0090280:intron | 40.0% | |
| CAACAAATCCTAGATATGGG+AGG | - | chr1_2:72158984-72159003 | Msa0090280:intron | 40.0% | |
| ATTAGCATTAGGTCCACTTG+AGG | + | chr1_2:72159398-72159417 | None:intergenic | 40.0% | |
| ! | AGGTCTAGAGGATTAGCATT+AGG | + | chr1_2:72159409-72159428 | None:intergenic | 40.0% |
| TAAAACAGCGACTGTTACCT+GGG | + | chr1_2:72159437-72159456 | None:intergenic | 40.0% | |
| ATAAAACAGCGACTGTTACC+TGG | + | chr1_2:72159438-72159457 | None:intergenic | 40.0% | |
| GCTTGGAACTGGAATGAAAA+TGG | + | chr1_2:72159673-72159692 | None:intergenic | 40.0% | |
| GGCAAATCCACAAATATTGC+AGG | - | chr1_2:72159711-72159730 | Msa0090280:CDS | 40.0% | |
| CTGCAGCAATAACAAGAATC+AGG | + | chr1_2:72159787-72159806 | None:intergenic | 40.0% | |
| CTGATAAACGAACCTATGGA+GGG | - | chr1_2:72159885-72159904 | Msa0090280:intron | 40.0% | |
| CAAAAAGTAAGCCAATGGAC+AGG | + | chr1_2:72160015-72160034 | None:intergenic | 40.0% | |
| !!! | CTGTCCATTGGCTTACTTTT+TGG | - | chr1_2:72160013-72160032 | Msa0090280:intron | 40.0% |
| TAATTGACCCTGGTGTTTCT+AGG | + | chr1_2:72160454-72160473 | None:intergenic | 40.0% | |
| GCTTCAAGCTGCAATAAGAA+AGG | + | chr1_2:72160519-72160538 | None:intergenic | 40.0% | |
| CTTATTGCAGCTTGAAGCAA+TGG | - | chr1_2:72160521-72160540 | Msa0090280:intron | 40.0% | |
| ! | TGATCGTGCTATAGTATTGG+AGG | - | chr1_2:72160548-72160567 | Msa0090280:intron | 40.0% |
| CATGTGGTCTAAAAGGTAGT+TGG | + | chr1_2:72160610-72160629 | None:intergenic | 40.0% | |
| ACTCATGCATGTGGTCTAAA+AGG | + | chr1_2:72160617-72160636 | None:intergenic | 40.0% | |
| ! | TTCGTTATCTTTTCTCTCGG+TGG | - | chr1_2:72160680-72160699 | Msa0090280:CDS | 40.0% |
| !! | ACAATCTCTCAAGTTGACTG+TGG | - | chr1_2:72160754-72160773 | Msa0090280:five_prime_UTR | 40.0% |
| GGAAATGAGAAGGTCATGTA+AGG | + | chr1_2:72160812-72160831 | None:intergenic | 40.0% | |
| GTCAAATTACGCTTGTCAGA+AGG | + | chr1_2:72160898-72160917 | None:intergenic | 40.0% | |
| TGATCTTCACGCGTTACTTG+CGG | + | chr1_2:72156698-72156717 | None:intergenic | 45.0% | |
| TTCGAAGACCAAAACGACGA+CGG | + | chr1_2:72156831-72156850 | None:intergenic | 45.0% | |
| ! | ATCAAAGGTGTGTCTGTGTC+CGG | + | chr1_2:72157438-72157457 | None:intergenic | 45.0% |
| TGATACCGGCCTTACAACTT+AGG | - | chr1_2:72157590-72157609 | Msa0090280:intron | 45.0% | |
| GATACCGGCCTTACAACTTA+GGG | - | chr1_2:72157591-72157610 | Msa0090280:intron | 45.0% | |
| AATTTGCAGTGTGCAAAGCG+AGG | + | chr1_2:72157641-72157660 | None:intergenic | 45.0% | |
| GCTTTGCACACTGCAAATTG+TGG | - | chr1_2:72157642-72157661 | Msa0090280:intron | 45.0% | |
| !! | ATAAGCATTTGCTGTGCAGC+AGG | + | chr1_2:72157832-72157851 | None:intergenic | 45.0% |
| TTTGAAGGATGGTACCACCT+TGG | - | chr1_2:72157867-72157886 | Msa0090280:intron | 45.0% | |
| !!! | AGTTTTGGTTGGTTGGTGTG+TGG | - | chr1_2:72158080-72158099 | Msa0090280:CDS | 45.0% |
| TCTCACATGCCAATTTGGAG+TGG | - | chr1_2:72158105-72158124 | Msa0090280:intron | 45.0% | |
| TTGAGGTGAAACAGACACTG+GGG | + | chr1_2:72158550-72158569 | None:intergenic | 45.0% | |
| CTTGAGGTGAAACAGACACT+GGG | + | chr1_2:72158551-72158570 | None:intergenic | 45.0% | |
| TATTTACGTAGCAGTTGCCG+AGG | + | chr1_2:72158763-72158782 | None:intergenic | 45.0% | |
| ! | AGGGAAGGTTCTGATGTCTA+TGG | - | chr1_2:72158912-72158931 | Msa0090280:intron | 45.0% |
| ! | GGGAAGGTTCTGATGTCTAT+GGG | - | chr1_2:72158913-72158932 | Msa0090280:intron | 45.0% |
| CAAATCCTAGATATGGGAGG+AGG | - | chr1_2:72158987-72159006 | Msa0090280:intron | 45.0% | |
| TGCCTTCAATAACCCTGAGA+GGG | - | chr1_2:72159049-72159068 | Msa0090280:CDS | 45.0% | |
| AATATTCAACCGCCCTCTCA+GGG | + | chr1_2:72159064-72159083 | None:intergenic | 45.0% | |
| AAATATTCAACCGCCCTCTC+AGG | + | chr1_2:72159065-72159084 | None:intergenic | 45.0% | |
| TTAGGTCCACTTGAGGTAAC+AGG | + | chr1_2:72159391-72159410 | None:intergenic | 45.0% | |
| AAAACAGCGACTGTTACCTG+GGG | + | chr1_2:72159436-72159455 | None:intergenic | 45.0% | |
| TTACAGGGCCTGCCAAATAT+TGG | - | chr1_2:72159509-72159528 | Msa0090280:intron | 45.0% | |
| GCGTAGAAAATCCAGAGAAC+CGG | + | chr1_2:72159552-72159571 | None:intergenic | 45.0% | |
| TTCAGTGCAAATGCAGCACA+GGG | + | chr1_2:72159602-72159621 | None:intergenic | 45.0% | |
| ATTCAGTGCAAATGCAGCAC+AGG | + | chr1_2:72159603-72159622 | None:intergenic | 45.0% | |
| TTGCCAAGCTCTTGTAGCAT+GGG | + | chr1_2:72159810-72159829 | None:intergenic | 45.0% | |
| TTTGCCAAGCTCTTGTAGCA+TGG | + | chr1_2:72159811-72159830 | None:intergenic | 45.0% | |
| !! | GAGATTGATTCGGGATCATC+AGG | - | chr1_2:72159848-72159867 | Msa0090280:intron | 45.0% |
| TAGGTTCGTTTATCAGGCGA+AGG | + | chr1_2:72159881-72159900 | None:intergenic | 45.0% | |
| TCGCCTGATAAACGAACCTA+TGG | - | chr1_2:72159881-72159900 | Msa0090280:intron | 45.0% | |
| CCTCCATAGGTTCGTTTATC+AGG | + | chr1_2:72159887-72159906 | None:intergenic | 45.0% | |
| CCTGATAAACGAACCTATGG+AGG | - | chr1_2:72159884-72159903 | Msa0090280:intron | 45.0% | |
| ATAAACGAACCTATGGAGGG+CGG | - | chr1_2:72159888-72159907 | Msa0090280:intron | 45.0% | |
| GAACAACCTATTGGGACAGA+TGG | - | chr1_2:72160053-72160072 | Msa0090280:intron | 45.0% | |
| ! | GGTGTGACAGTTACTGATTG+TGG | + | chr1_2:72160090-72160109 | None:intergenic | 45.0% |
| AGAGAAAGGCTAATTGACCC+TGG | + | chr1_2:72160464-72160483 | None:intergenic | 45.0% | |
| GTGGTCTAAAAGGTAGTTGG+CGG | + | chr1_2:72160607-72160626 | None:intergenic | 45.0% | |
| !! | TCTCAAGTTGACTGTGGACA+AGG | - | chr1_2:72160760-72160779 | Msa0090280:five_prime_UTR | 45.0% |
| !! | CTCAAGTTGACTGTGGACAA+GGG | - | chr1_2:72160761-72160780 | Msa0090280:five_prime_UTR | 45.0% |
| ATGAGAAGGTCATGTAAGGG+CGG | + | chr1_2:72160808-72160827 | None:intergenic | 45.0% | |
| TATATGAAGGAGCCCTCGAT+GGG | + | chr1_2:72160837-72160856 | None:intergenic | 45.0% | |
| !! | ATTAAATAATAACTTATTTA+TGG | + | chr1_2:72157557-72157576 | None:intergenic | 5.0% |
| !! | ATAAATAAGTTATTATTTAA+TGG | - | chr1_2:72157556-72157575 | Msa0090280:intron | 5.0% |
| !! | AAAATATTATTCATAAATTT+AGG | - | chr1_2:72159258-72159277 | Msa0090280:CDS | 5.0% |
| !! | AAATATTATTCATAAATTTA+GGG | - | chr1_2:72159259-72159278 | Msa0090280:CDS | 5.0% |
| GATCTTCACGCGTTACTTGC+GGG | + | chr1_2:72156697-72156716 | None:intergenic | 50.0% | |
| TTTGCGGCGATCGAAGATGA+AGG | - | chr1_2:72156879-72156898 | Msa0090280:three_prime_UTR | 50.0% | |
| TGAGGGTAAACCGAGTCTTG+TGG | + | chr1_2:72156952-72156971 | None:intergenic | 50.0% | |
| CACTGACACACGTCAAACAC+CGG | - | chr1_2:72157416-72157435 | Msa0090280:intron | 50.0% | |
| CCACAGACCCTTAGATAGCT+GGG | + | chr1_2:72158159-72158178 | None:intergenic | 50.0% | |
| ACCACAGACCCTTAGATAGC+TGG | + | chr1_2:72158160-72158179 | None:intergenic | 50.0% | |
| TTCAAATGCTCCTCCAGCGA+AGG | - | chr1_2:72158350-72158369 | Msa0090280:intron | 50.0% | |
| CAAACTTCTCTCACCTTCGC+TGG | + | chr1_2:72158366-72158385 | None:intergenic | 50.0% | |
| TAGGAGCAGCACTTGTCTGT+GGG | + | chr1_2:72158518-72158537 | None:intergenic | 50.0% | |
| TGAGGTGAAACAGACACTGG+GGG | + | chr1_2:72158549-72158568 | None:intergenic | 50.0% | |
| GCTTGAGGTGAAACAGACAC+TGG | + | chr1_2:72158552-72158571 | None:intergenic | 50.0% | |
| AGCTCCTGCTCCTATATCCT+CGG | - | chr1_2:72158743-72158762 | Msa0090280:intron | 50.0% | |
| GTAGCAGTTGCCGAGGATAT+AGG | + | chr1_2:72158756-72158775 | None:intergenic | 50.0% | |
| ! | AGGTTCTGATGTCTATGGGC+AGG | - | chr1_2:72158917-72158936 | Msa0090280:intron | 50.0% |
| GCTGCATCTAATCTGGTTGC+CGG | - | chr1_2:72158939-72158958 | Msa0090280:intron | 50.0% | |
| TGTTCCCTCCAAGTTGCTAC+CGG | + | chr1_2:72158961-72158980 | None:intergenic | 50.0% | |
| AGCTTCCTCCTCCCATATCT+AGG | + | chr1_2:72158995-72159014 | None:intergenic | 50.0% | |
| TAGATATGGGAGGAGGAAGC+TGG | - | chr1_2:72158994-72159013 | Msa0090280:intron | 50.0% | |
| AGATATGGGAGGAGGAAGCT+GGG | - | chr1_2:72158995-72159014 | Msa0090280:intron | 50.0% | |
| CTGCCTTCAATAACCCTGAG+AGG | - | chr1_2:72159048-72159067 | Msa0090280:CDS | 50.0% | |
| CTTCAATAACCCTGAGAGGG+CGG | - | chr1_2:72159052-72159071 | Msa0090280:CDS | 50.0% | |
| ! | TGCTGGAGCTTCAGCTTGTT+CGG | + | chr1_2:72159290-72159309 | None:intergenic | 50.0% |
| TTCACAGGTTGTGCACTTGC+AGG | + | chr1_2:72159325-72159344 | None:intergenic | 50.0% | |
| TGCACAACCTGTGAATCCTG+AGG | - | chr1_2:72159330-72159349 | Msa0090280:intron | 50.0% | |
| CACCAGCACCAATATTTGGC+AGG | + | chr1_2:72159520-72159539 | None:intergenic | 50.0% | |
| GCAGCACCAGCACCAATATT+TGG | + | chr1_2:72159524-72159543 | None:intergenic | 50.0% | |
| !! | AATATTGGTGCTGGTGCTGC+TGG | - | chr1_2:72159524-72159543 | Msa0090280:intron | 50.0% |
| TAGCTCGCAATGCTTGGAAC+TGG | + | chr1_2:72159684-72159703 | None:intergenic | 50.0% | |
| ! | GTTCCAAGCATTGCGAGCTA+TGG | - | chr1_2:72159684-72159703 | Msa0090280:CDS | 50.0% |
| ATCAGTAACTGTCACACCCG+AGG | - | chr1_2:72160092-72160111 | Msa0090280:intron | 50.0% | |
| TTCAATAGCTTGGCGCTCCT+CGG | + | chr1_2:72160112-72160131 | None:intergenic | 50.0% | |
| GTTCGTCGAACTCATGCATG+TGG | + | chr1_2:72160626-72160645 | None:intergenic | 50.0% | |
| ATGTAAGGGCGGCAATGAGA+AGG | + | chr1_2:72160797-72160816 | None:intergenic | 50.0% | |
| TCGATGGGGAGGAAATGAGA+AGG | + | chr1_2:72160822-72160841 | None:intergenic | 50.0% | |
| TTCTCATTTCCTCCCCATCG+AGG | - | chr1_2:72160821-72160840 | Msa0090280:five_prime_UTR | 50.0% | |
| TCTCATTTCCTCCCCATCGA+GGG | - | chr1_2:72160822-72160841 | Msa0090280:five_prime_UTR | 50.0% | |
| ATATGAAGGAGCCCTCGATG+GGG | + | chr1_2:72160836-72160855 | None:intergenic | 50.0% | |
| GTATATGAAGGAGCCCTCGA+TGG | + | chr1_2:72160838-72160857 | None:intergenic | 50.0% | |
| CACGCGTTACTTGCGGGATT+GGG | + | chr1_2:72156691-72156710 | None:intergenic | 55.0% | |
| TCACGCGTTACTTGCGGGAT+TGG | + | chr1_2:72156692-72156711 | None:intergenic | 55.0% | |
| CGAAGTCACGCCACAAGACT+CGG | - | chr1_2:72156939-72156958 | Msa0090280:three_prime_UTR | 55.0% | |
| GCAGCCCTAAGTTGTAAGGC+CGG | + | chr1_2:72157598-72157617 | None:intergenic | 55.0% | |
| AGGCGCAGCCCTAAGTTGTA+AGG | + | chr1_2:72157602-72157621 | None:intergenic | 55.0% | |
| GAAGGATGGTACCACCTTGG+AGG | - | chr1_2:72157870-72157889 | Msa0090280:intron | 55.0% | |
| CCCAGCTATCTAAGGGTCTG+TGG | - | chr1_2:72158156-72158175 | Msa0090280:intron | 55.0% | |
| AGTAGACCCTTCACCAGACG+CGG | + | chr1_2:72158328-72158347 | None:intergenic | 55.0% | |
| ACTTCTCTCACCTTCGCTGG+AGG | + | chr1_2:72158363-72158382 | None:intergenic | 55.0% | |
| AGGAGCAGCACTTGTCTGTG+GGG | + | chr1_2:72158517-72158536 | None:intergenic | 55.0% | |
| GTAGGAGCAGCACTTGTCTG+TGG | + | chr1_2:72158519-72158538 | None:intergenic | 55.0% | |
| AGGTGAAACAGACACTGGGG+GGG | + | chr1_2:72158547-72158566 | None:intergenic | 55.0% | |
| GAGGTGAAACAGACACTGGG+GGG | + | chr1_2:72158548-72158567 | None:intergenic | 55.0% | |
| TCAAGCTCCTGCTGCAACTG+CGG | - | chr1_2:72158566-72158585 | Msa0090280:CDS | 55.0% | |
| ! | GAAGGTGCAGCAACAGATGC+AGG | + | chr1_2:72158714-72158733 | None:intergenic | 55.0% |
| GAGGATATAGGAGCAGGAGC+TGG | + | chr1_2:72158744-72158763 | None:intergenic | 55.0% | |
| GTTGCCGAGGATATAGGAGC+AGG | + | chr1_2:72158750-72158769 | None:intergenic | 55.0% | |
| TGGGCAGGCTGCATCTAATC+TGG | - | chr1_2:72158932-72158951 | Msa0090280:intron | 55.0% | |
| TCTGGTTGCCGGTAGCAACT+TGG | - | chr1_2:72158950-72158969 | Msa0090280:intron | 55.0% | |
| GTTGCCGGTAGCAACTTGGA+GGG | - | chr1_2:72158954-72158973 | Msa0090280:intron | 55.0% | |
| CGCCCTCTCAGGGTTATTGA+AGG | + | chr1_2:72159054-72159073 | None:intergenic | 55.0% | |
| ! | GCTGGAGCTTCAGCTTGTTC+GGG | + | chr1_2:72159289-72159308 | None:intergenic | 55.0% |
| CCACTTGAGGTAACAGGAGC+AGG | + | chr1_2:72159385-72159404 | None:intergenic | 55.0% | |
| CCTGCTCCTGTTACCTCAAG+TGG | - | chr1_2:72159382-72159401 | Msa0090280:intron | 55.0% | |
| TCCTCTAGACCTCTTTCCCC+AGG | - | chr1_2:72159417-72159436 | Msa0090280:intron | 55.0% | |
| ACCTGGGGAAAGAGGTCTAG+AGG | + | chr1_2:72159421-72159440 | None:intergenic | 55.0% | |
| CGACTGTTACCTGGGGAAAG+AGG | + | chr1_2:72159429-72159448 | None:intergenic | 55.0% | |
| GGCCTGCCAAATATTGGTGC+TGG | - | chr1_2:72159515-72159534 | Msa0090280:intron | 55.0% | |
| GCACCATAGCTCGCAATGCT+TGG | + | chr1_2:72159690-72159709 | None:intergenic | 55.0% | |
| AGCATTGCGAGCTATGGTGC+AGG | - | chr1_2:72159690-72159709 | Msa0090280:CDS | 55.0% | |
| CAGCCCATGCTACAAGAGCT+TGG | - | chr1_2:72159804-72159823 | Msa0090280:CDS | 55.0% | |
| AACCTATGGAGGGCGGAGAA+GGG | - | chr1_2:72159895-72159914 | Msa0090280:intron | 55.0% | |
| CAGCAGCCATCTGTCCCAAT+AGG | + | chr1_2:72160062-72160081 | None:intergenic | 55.0% | |
| CTATTGGGACAGATGGCTGC+TGG | - | chr1_2:72160060-72160079 | Msa0090280:intron | 55.0% | |
| TCAATAGCTTGGCGCTCCTC+GGG | + | chr1_2:72160111-72160130 | None:intergenic | 55.0% | |
| AGTAAGCCCGCGTCTGGTGA+AGG | - | chr1_2:72158318-72158337 | Msa0090280:CDS | 60.0% | |
| GTAAGCCCGCGTCTGGTGAA+GGG | - | chr1_2:72158319-72158338 | Msa0090280:CDS | 60.0% | |
| GTAGACCCTTCACCAGACGC+GGG | + | chr1_2:72158327-72158346 | None:intergenic | 60.0% | |
| GACACTGGGGGGGTTGAAGT+AGG | + | chr1_2:72158537-72158556 | None:intergenic | 60.0% | |
| GCAGTTGCAGCAGGAGCTTG+AGG | + | chr1_2:72158567-72158586 | None:intergenic | 60.0% | |
| TAGGAGCAGGAGCTGGAGCT+GGG | + | chr1_2:72158737-72158756 | None:intergenic | 60.0% | |
| ATAGGAGCAGGAGCTGGAGC+TGG | + | chr1_2:72158738-72158757 | None:intergenic | 60.0% | |
| GGTTGCCGGTAGCAACTTGG+AGG | - | chr1_2:72158953-72158972 | Msa0090280:intron | 60.0% | |
| TGGGAGGAGGAAGCTGGGAT+AGG | - | chr1_2:72159000-72159019 | Msa0090280:intron | 60.0% | |
| GGGAGGAGGAAGCTGGGATA+GGG | - | chr1_2:72159001-72159020 | Msa0090280:intron | 60.0% | |
| TTGTGCACTTGCAGGCGCTC+GGG | + | chr1_2:72159317-72159336 | None:intergenic | 60.0% | |
| GTTGTGCACTTGCAGGCGCT+CGG | + | chr1_2:72159318-72159337 | None:intergenic | 60.0% | |
| GCTGCAGCCTCAGGATTCAC+AGG | + | chr1_2:72159340-72159359 | None:intergenic | 60.0% | |
| GAACCTATGGAGGGCGGAGA+AGG | - | chr1_2:72159894-72159913 | Msa0090280:intron | 60.0% | |
| TGGCAGAGTAAGCCCGCGTC+TGG | - | chr1_2:72158312-72158331 | Msa0090280:CDS | 65.0% | |
| AGGAGCAGGAGCTGGAGCTG+GGG | + | chr1_2:72158736-72158755 | None:intergenic | 65.0% | |
| GGAGCAGGCTGAGCTGCTTG+TGG | + | chr1_2:72159370-72159389 | None:intergenic | 65.0% | |
| !! | TGCTGCTGGTGCCGGTTCTC+TGG | - | chr1_2:72159538-72159557 | Msa0090280:intron | 65.0% |
| CACCCTTCTCCGCCCTCCAT+AGG | + | chr1_2:72159900-72159919 | None:intergenic | 65.0% | |
| TGAAGGAGCCCTCGATGGGG+AGG | + | chr1_2:72160833-72160852 | None:intergenic | 65.0% | |
| !! | CACGGTGCCGCAGTTGCAGC+AGG | + | chr1_2:72158576-72158595 | None:intergenic | 70.0% |
| GCAGGAGCTGGAGCTGGGGA+AGG | + | chr1_2:72158732-72158751 | None:intergenic | 70.0% | |
| GGAGCTGCAGCTGCAGCCTC+AGG | + | chr1_2:72159349-72159368 | None:intergenic | 70.0% | |
| !! | GGTGCTGGTGCTGCTGGTGC+CGG | - | chr1_2:72159530-72159549 | Msa0090280:intron | 70.0% |
| GCAGGCGCTCGGGACACTGC+TGG | + | chr1_2:72159307-72159326 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 72156680 | 72160941 | 72156680 | ID=Msa0090280;Name=Msa0090280 |
| chr1_2 | mRNA | 72156680 | 72160941 | 72156680 | ID=Msa0090280-mRNA-1;Parent=Msa0090280;Name=Msa0090280-mRNA-1;_AED=0.15;_eAED=0.15;_QI=215|1|1|1|1|1|12|291|397 |
| chr1_2 | exon | 72156680 | 72157090 | 72156680 | ID=Msa0090280-mRNA-1:exon:25064;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72157487 | 72157568 | 72157487 | ID=Msa0090280-mRNA-1:exon:25063;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72157705 | 72157814 | 72157705 | ID=Msa0090280-mRNA-1:exon:25062;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72157889 | 72157936 | 72157889 | ID=Msa0090280-mRNA-1:exon:25061;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72158038 | 72158106 | 72158038 | ID=Msa0090280-mRNA-1:exon:25060;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72158183 | 72158341 | 72158183 | ID=Msa0090280-mRNA-1:exon:25059;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72158530 | 72158707 | 72158530 | ID=Msa0090280-mRNA-1:exon:25058;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72158846 | 72158911 | 72158846 | ID=Msa0090280-mRNA-1:exon:25057;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72159029 | 72159108 | 72159029 | ID=Msa0090280-mRNA-1:exon:25056;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72159250 | 72159303 | 72159250 | ID=Msa0090280-mRNA-1:exon:25055;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72159682 | 72159843 | 72159682 | ID=Msa0090280-mRNA-1:exon:25054;Parent=Msa0090280-mRNA-1 |
| chr1_2 | exon | 72160661 | 72160941 | 72160661 | ID=Msa0090280-mRNA-1:exon:25053;Parent=Msa0090280-mRNA-1 |
| chr1_2 | five_prime_UTR | 72160727 | 72160941 | 72160727 | ID=Msa0090280-mRNA-1:five_prime_utr;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72160661 | 72160726 | 72160661 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72159682 | 72159843 | 72159682 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72159250 | 72159303 | 72159250 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72159029 | 72159108 | 72159029 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72158846 | 72158911 | 72158846 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72158530 | 72158707 | 72158530 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72158183 | 72158341 | 72158183 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72158038 | 72158106 | 72158038 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72157889 | 72157936 | 72157889 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72157705 | 72157814 | 72157705 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72157487 | 72157568 | 72157487 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | CDS | 72156971 | 72157090 | 72156971 | ID=Msa0090280-mRNA-1:cds;Parent=Msa0090280-mRNA-1 |
| chr1_2 | three_prime_UTR | 72156680 | 72156970 | 72156680 | ID=Msa0090280-mRNA-1:three_prime_utr;Parent=Msa0090280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
