Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602530 | AIY27528.1 | 100.000 | 250 | 0 | 0 | 1 | 250 | 1 | 250 | 0.0 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602530 | sp|P48534|APX1_PEA | 95.200 | 250 | 12 | 0 | 1 | 250 | 1 | 250 | 6.08e-177 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090280 | Msa0602530 | 0.811895 | 5.568644e-51 | -8.615850e-47 |
| Msa0106120 | Msa0602530 | 0.813824 | 2.104663e-51 | -8.615850e-47 |
| Msa0139720 | Msa0602530 | 0.810310 | 1.228506e-50 | -8.615850e-47 |
| Msa0465670 | Msa0602530 | 0.804356 | 2.246897e-49 | -8.615850e-47 |
| Msa0242700 | Msa0602530 | 0.802607 | 5.178632e-49 | -8.615850e-47 |
| Msa0602530 | Msa0683350 | 0.973594 | 1.077170e-136 | -8.615850e-47 |
| Msa0602530 | Msa0796430 | 0.801359 | 9.346820e-49 | -8.615850e-47 |
| Msa0602530 | Msa0834270 | 0.805134 | 1.545710e-49 | -8.615850e-47 |
| Msa0602530 | Msa0981010 | -0.807792 | 4.251273e-50 | -8.615850e-47 |
| Msa0602530 | Msa1132560 | 0.809806 | 1.576895e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602530 | MtrunA17_Chr4g0030171 | 99.200 | 250 | 2 | 0 | 1 | 250 | 1 | 250 | 0.0 | 506 |
| Msa0602530 | MtrunA17_Chr5g0405731 | 64.167 | 240 | 85 | 1 | 8 | 247 | 6 | 244 | 7.06e-114 | 328 |
| Msa0602530 | MtrunA17_Chr4g0037131 | 63.223 | 242 | 88 | 1 | 7 | 248 | 6 | 246 | 5.94e-110 | 318 |
| Msa0602530 | MtrunA17_Chr3g0124821 | 46.094 | 256 | 112 | 6 | 16 | 246 | 101 | 355 | 5.19e-68 | 214 |
| Msa0602530 | MtrunA17_Chr3g0137751 | 39.407 | 236 | 120 | 7 | 20 | 246 | 93 | 314 | 2.91e-40 | 141 |
| Msa0602530 | MtrunA17_Chr4g0068621 | 30.233 | 215 | 106 | 8 | 73 | 248 | 112 | 321 | 4.68e-15 | 73.6 |
| Msa0602530 | MtrunA17_Chr6g0477071 | 28.986 | 207 | 112 | 7 | 73 | 249 | 127 | 328 | 1.17e-14 | 72.4 |
| Msa0602530 | MtrunA17_Chr8g0379871 | 82.353 | 34 | 6 | 0 | 66 | 99 | 3 | 36 | 6.17e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0602530 | AT1G07890.2 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0602530 | AT1G07890.8 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0602530 | AT1G07890.4 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0602530 | AT1G07890.7 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0602530 | AT1G07890.1 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0602530 | AT1G07890.3 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0602530 | AT1G07890.5 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0602530 | AT1G07890.6 | 80.567 | 247 | 48 | 0 | 1 | 247 | 1 | 247 | 8.20e-154 | 428 |
| Msa0602530 | AT3G09640.2 | 81.377 | 247 | 45 | 1 | 3 | 249 | 4 | 249 | 2.14e-149 | 417 |
| Msa0602530 | AT3G09640.1 | 81.377 | 247 | 45 | 1 | 3 | 249 | 4 | 249 | 2.14e-149 | 417 |
| Msa0602530 | AT4G35000.1 | 66.942 | 242 | 79 | 1 | 6 | 247 | 4 | 244 | 1.39e-116 | 335 |
| Msa0602530 | AT4G35970.1 | 60.166 | 241 | 94 | 2 | 7 | 247 | 4 | 242 | 2.07e-100 | 294 |
| Msa0602530 | AT4G35970.2 | 59.361 | 219 | 87 | 2 | 7 | 225 | 4 | 220 | 1.81e-89 | 264 |
| Msa0602530 | AT1G77490.1 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 1.01e-67 | 215 |
| Msa0602530 | AT1G77490.2 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 1.08e-67 | 215 |
| Msa0602530 | AT4G08390.2 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.46e-66 | 209 |
| Msa0602530 | AT4G08390.5 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.46e-66 | 209 |
| Msa0602530 | AT4G08390.1 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.46e-66 | 209 |
| Msa0602530 | AT4G08390.3 | 46.484 | 256 | 111 | 6 | 16 | 246 | 106 | 360 | 1.08e-65 | 208 |
| Msa0602530 | AT4G08390.4 | 42.969 | 256 | 94 | 8 | 16 | 246 | 107 | 335 | 1.26e-53 | 177 |
| Msa0602530 | AT4G32320.1 | 36.653 | 251 | 125 | 7 | 5 | 246 | 98 | 323 | 1.40e-38 | 137 |
| Msa0602530 | AT4G31760.1 | 32.663 | 199 | 84 | 7 | 91 | 246 | 118 | 309 | 2.43e-17 | 80.1 |
| Msa0602530 | AT3G28200.1 | 26.786 | 280 | 156 | 10 | 12 | 247 | 26 | 300 | 1.81e-14 | 72.0 |
| Msa0602530 | AT4G33420.1 | 32.474 | 194 | 96 | 8 | 82 | 245 | 119 | 307 | 1.23e-13 | 69.7 |
| Msa0602530 | AT4G09010.2 | 27.519 | 258 | 110 | 8 | 28 | 246 | 43 | 262 | 1.29e-13 | 69.3 |
| Msa0602530 | AT4G33420.2 | 32.474 | 194 | 96 | 8 | 82 | 245 | 166 | 354 | 1.45e-13 | 69.7 |
| Msa0602530 | AT4G09010.1 | 27.519 | 258 | 110 | 8 | 28 | 246 | 108 | 327 | 2.31e-13 | 69.3 |
| Msa0602530 | AT4G09010.3 | 27.519 | 258 | 110 | 8 | 28 | 246 | 155 | 374 | 4.88e-13 | 68.6 |
Find 133 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAGACCTTGCTCTTATTT+TGG | 0.091166 | 4_2:-46226600 | Msa0602530:three_prime_UTR |
| GTGATAATTCCCAGCTATTT+TGG | 0.206378 | 4_2:-46226472 | Msa0602530:three_prime_UTR |
| GTGAAATTTATGTAAGATTC+AGG | 0.216025 | 4_2:+46226620 | None:intergenic |
| TTAGATGGTTAAGATGAATT+TGG | 0.227197 | 4_2:+46229644 | None:intergenic |
| GTTGTTGCTGTTGAGATTAC+TGG | 0.232804 | 4_2:-46228442 | Msa0602530:CDS |
| TGATATCGCTGTTAGGCTTT+TGG | 0.241502 | 4_2:-46228614 | Msa0602530:CDS |
| GCTCTCCTCGTGTCACTGTT+AGG | 0.263578 | 4_2:-46229490 | Msa0602530:five_prime_UTR |
| AGAACTTGAAAGACAACTTT+TGG | 0.278359 | 4_2:+46226414 | None:intergenic |
| AAGAAAATGTTGAAAGGTCT+TGG | 0.292098 | 4_2:+46229757 | None:intergenic |
| TCGCCTTCTCAACAGCCTTT+TGG | 0.306455 | 4_2:+46229196 | None:intergenic |
| TCGAAATCTAAGAAGGAAAA+TGG | 0.317014 | 4_2:+46229452 | None:intergenic |
| AAGCTCAGCTTGGTGCTTGA+TGG | 0.336855 | 4_2:+46228660 | None:intergenic |
| GATTGATTTGGAAAGTTAGA+TGG | 0.349133 | 4_2:+46229629 | None:intergenic |
| TCAACAAGTGGGCGGAATAC+AGG | 0.362317 | 4_2:+46226986 | None:intergenic |
| CGCTCCTCTTATGCTCCGTT+TGG | 0.364102 | 4_2:-46229136 | Msa0602530:CDS |
| TCGTGGGGTTATGATTGATT+TGG | 0.372269 | 4_2:+46229617 | None:intergenic |
| CGTCTAGCGTTTAATTGTCT+TGG | 0.376349 | 4_2:-46226391 | Msa0602530:three_prime_UTR |
| ACAAAGACTGGTGGTCCTTT+CGG | 0.381599 | 4_2:-46228685 | Msa0602530:CDS |
| CGACCCTCTGGTGGTGGCTC+AGG | 0.382379 | 4_2:+46227748 | None:intergenic |
| ACGAACAACACGTAGTTATA+AGG | 0.383526 | 4_2:+46229548 | None:intergenic |
| GCTGCACACAAGGAGCGTTC+TGG | 0.387014 | 4_2:-46227227 | Msa0602530:CDS |
| CAGGACATCGTTGCTCTGTC+TGG | 0.408589 | 4_2:-46227569 | Msa0602530:CDS |
| TCTTCAGTTGCCAAGTGATA+AGG | 0.411660 | 4_2:-46227023 | Msa0602530:CDS |
| AAATCAGCATAGCTAATGAT+TGG | 0.419318 | 4_2:+46228571 | None:intergenic |
| ACGGTCTTGATATCGCTGTT+AGG | 0.422947 | 4_2:-46228621 | Msa0602530:CDS |
| ACACGCTCTTTCTTCACTCT+TGG | 0.424674 | 4_2:-46229518 | Msa0602530:five_prime_UTR |
| AGAAAATGTTGAAAGGTCTT+GGG | 0.424795 | 4_2:+46229758 | None:intergenic |
| TGCAGGTTCTGACCATTTGA+GGG | 0.426677 | 4_2:-46227624 | Msa0602530:intron |
| TTGTGTAGATGGCACTCTGC+TGG | 0.426968 | 4_2:-46228724 | Msa0602530:intron |
| TGAAATGATTAGGGAGTTGT+TGG | 0.432563 | 4_2:-46227065 | Msa0602530:intron |
| CACTAACCCTTGGTGGCATC+AGG | 0.433823 | 4_2:+46227721 | None:intergenic |
| GATAATCAAACCAAAATAGC+TGG | 0.434443 | 4_2:+46226462 | None:intergenic |
| CCGGGGTGGAAAGGAACTTC+AGG | 0.436434 | 4_2:+46228415 | None:intergenic |
| CTCTCCTCGTGTCACTGTTA+GGG | 0.437435 | 4_2:-46229489 | Msa0602530:five_prime_UTR |
| GGATGTGTTTGGCAAAGCTA+TGG | 0.443040 | 4_2:-46227603 | Msa0602530:CDS |
| ATTGGGAATTGCTCCTTAAG+AGG | 0.447187 | 4_2:+46228589 | None:intergenic |
| TTTGATTCAAAGACAAAGAC+TGG | 0.447588 | 4_2:-46228697 | Msa0602530:CDS |
| CAAGGAGCGTTCTGGATTTG+AGG | 0.450558 | 4_2:-46227219 | Msa0602530:CDS |
| AATACACGGTGTGATTTGAT+TGG | 0.452509 | 4_2:+46229674 | None:intergenic |
| TTTGATTGGGTGGGTGAAGT+AGG | 0.455952 | 4_2:+46229688 | None:intergenic |
| GGAGTTGTTGGGTGGTGAGA+AGG | 0.456331 | 4_2:-46227053 | Msa0602530:CDS |
| TTGCAGGTTCTGACCATTTG+AGG | 0.456831 | 4_2:-46227625 | Msa0602530:intron |
| GGCAAGCGACCCTCTGGTGG+TGG | 0.457136 | 4_2:+46227742 | None:intergenic |
| GGTAATCAGCACTCACGGTT+GGG | 0.463922 | 4_2:+46229217 | None:intergenic |
| GCATCAGGCAAGCGACCCTC+TGG | 0.466554 | 4_2:+46227736 | None:intergenic |
| GACCATTTGAGGGATGTGTT+TGG | 0.471367 | 4_2:-46227614 | Msa0602530:CDS |
| ATCAAAAGCTATCTGAGCTT+GGG | 0.472564 | 4_2:-46226799 | Msa0602530:intron |
| CATCAAAAGCTATCTGAGCT+TGG | 0.474904 | 4_2:-46226800 | Msa0602530:CDS |
| AACACCACACACCGTTCCTC+AGG | 0.476362 | 4_2:+46226658 | None:intergenic |
| GGGGATTGTGAGGCGTTGGA+TGG | 0.476879 | 4_2:+46229588 | None:intergenic |
| CTCAAAAGTGCCTTATCACT+TGG | 0.477819 | 4_2:+46227013 | None:intergenic |
| TACGCCAAACGGAGCATAAG+AGG | 0.478986 | 4_2:+46229132 | None:intergenic |
| TTTGTGGTTATGCAGTTGGC+TGG | 0.479033 | 4_2:-46228466 | Msa0602530:intron |
| CATGCGTAAAGAGCAACATT+GGG | 0.484715 | 4_2:+46226438 | None:intergenic |
| AAAATAAAACTTACGCCAAA+CGG | 0.488936 | 4_2:+46229121 | None:intergenic |
| TATCACTTGGCAACTGAAGA+AGG | 0.489890 | 4_2:+46227026 | None:intergenic |
| TGAAATTTATGTAAGATTCA+GGG | 0.497618 | 4_2:+46226621 | None:intergenic |
| CACCATGAGCAAGCTCAGCT+TGG | 0.497717 | 4_2:+46228650 | None:intergenic |
| GATGTGTTTGGCAAAGCTAT+GGG | 0.498498 | 4_2:-46227602 | Msa0602530:CDS |
| AATCAGCATAGCTAATGATT+GGG | 0.504612 | 4_2:+46228572 | None:intergenic |
| TGCCAAACACATCCCTCAAA+TGG | 0.508400 | 4_2:+46227612 | None:intergenic |
| AAGGAGCGTTCTGGATTTGA+GGG | 0.511703 | 4_2:-46227218 | Msa0602530:CDS |
| TAAGGAGGAGAAAGTTCTAG+AGG | 0.513052 | 4_2:+46229566 | None:intergenic |
| AAGGAGGAGAAAGTTCTAGA+GGG | 0.513114 | 4_2:+46229567 | None:intergenic |
| CACCAAGCTGAGCTTGCTCA+TGG | 0.514212 | 4_2:-46228652 | Msa0602530:CDS |
| AGCTATGGGGCTTAGTGACC+AGG | 0.514461 | 4_2:-46227588 | Msa0602530:CDS |
| TAGTAAACGTACCTCCCTAC+CGG | 0.522438 | 4_2:+46228396 | None:intergenic |
| AAGTTCCTTTCCACCCCGGT+AGG | 0.526103 | 4_2:-46228411 | Msa0602530:CDS |
| ATGAGAGGATTAGAAGTCCA+TGG | 0.528007 | 4_2:+46227194 | None:intergenic |
| CAACAAGTGGGCGGAATACA+GGG | 0.530888 | 4_2:+46226987 | None:intergenic |
| ACCTCCCTACCGGGGTGGAA+AGG | 0.535670 | 4_2:+46228406 | None:intergenic |
| AGGAGGAGAAAGTTCTAGAG+GGG | 0.536566 | 4_2:+46229568 | None:intergenic |
| GGAGGAGAAAGTTCTAGAGG+GGG | 0.536985 | 4_2:+46229569 | None:intergenic |
| AGTAAACGTACCTCCCTACC+GGG | 0.538079 | 4_2:+46228397 | None:intergenic |
| ACATGCGTAAAGAGCAACAT+TGG | 0.541229 | 4_2:+46226437 | None:intergenic |
| CGTGAGTGCTGATTACCAAA+AGG | 0.551875 | 4_2:-46229211 | Msa0602530:CDS |
| CAGACAGAGCAACGATGTCC+TGG | 0.552668 | 4_2:+46227570 | None:intergenic |
| TCCAGAACACTAACCCTTGG+TGG | 0.552948 | 4_2:+46227714 | None:intergenic |
| TCGCTTGCCTGATGCCACCA+AGG | 0.554221 | 4_2:-46227728 | Msa0602530:CDS |
| ACTCACCTCGAAATCTAAGA+AGG | 0.556896 | 4_2:+46229445 | None:intergenic |
| TGGTAATCAGCACTCACGGT+TGG | 0.557293 | 4_2:+46229216 | None:intergenic |
| CGCTTGCCTGATGCCACCAA+GGG | 0.557551 | 4_2:-46227727 | Msa0602530:intron |
| CGTTGGATGGATAAGATCGT+GGG | 0.563175 | 4_2:+46229601 | None:intergenic |
| AGTTCCTTTCCACCCCGGTA+GGG | 0.567360 | 4_2:-46228410 | Msa0602530:CDS |
| TCAGGCAAGCGACCCTCTGG+TGG | 0.568572 | 4_2:+46227739 | None:intergenic |
| ATAATCAAACCAAAATAGCT+GGG | 0.568691 | 4_2:+46226463 | None:intergenic |
| CACGGTGTGATTTGATTGGG+TGG | 0.574514 | 4_2:+46229678 | None:intergenic |
| ATACACGGTGTGATTTGATT+GGG | 0.574940 | 4_2:+46229675 | None:intergenic |
| GACATCGTTGCTCTGTCTGG+TGG | 0.579861 | 4_2:-46227566 | Msa0602530:CDS |
| GCAGCATATTTCTCAACAAG+TGG | 0.582870 | 4_2:+46226974 | None:intergenic |
| TTACCAAAAGGCTGTTGAGA+AGG | 0.586567 | 4_2:-46229199 | Msa0602530:CDS |
| TCCTTTCCACCCCGGTAGGG+AGG | 0.587045 | 4_2:-46228407 | Msa0602530:intron |
| AAGATTAAGAAAATGTTGAA+AGG | 0.588625 | 4_2:+46229751 | None:intergenic |
| TTGGTAGGGAGCTGCACACA+AGG | 0.589477 | 4_2:-46227237 | Msa0602530:intron |
| GTTGCTGTTGAGATTACTGG+TGG | 0.592645 | 4_2:-46228439 | Msa0602530:CDS |
| TAGCTATGCTGATTTCTACC+AGG | 0.595859 | 4_2:-46228563 | Msa0602530:intron |
| CAAGCCTGAGCCACCACCAG+AGG | 0.599599 | 4_2:-46227752 | Msa0602530:CDS |
| TTCGTCAATGATGACGAATG+AGG | 0.599893 | 4_2:+46229712 | None:intergenic |
| GTTCTGGATTTGAGGGCCCA+TGG | 0.602005 | 4_2:-46227211 | Msa0602530:CDS |
| AACGGTGTGTGGTGTTTGAG+AGG | 0.607040 | 4_2:-46226651 | Msa0602530:three_prime_UTR |
| GCGTTGGATGGATAAGATCG+TGG | 0.612646 | 4_2:+46229600 | None:intergenic |
| GAAATGATTAGGGAGTTGTT+GGG | 0.614317 | 4_2:-46227064 | Msa0602530:intron |
| TGAGAGGATTAGAAGTCCAT+GGG | 0.619251 | 4_2:+46227195 | None:intergenic |
| AAGCCTGAGCCACCACCAGA+GGG | 0.625588 | 4_2:-46227751 | Msa0602530:CDS |
| TGTGTGGTGTTTGAGAGGCA+TGG | 0.630213 | 4_2:-46226646 | Msa0602530:three_prime_UTR |
| TTAACAATGTTATTTAACAG+AGG | 0.633091 | 4_2:+46226495 | None:intergenic |
| CCTGAAGTTCCTTTCCACCC+CGG | 0.635685 | 4_2:-46228415 | Msa0602530:CDS |
| GATTCAAAGACAAAGACTGG+TGG | 0.639755 | 4_2:-46228694 | Msa0602530:CDS |
| TTTCTTTGCTGATTATGCCG+AGG | 0.640041 | 4_2:-46226825 | Msa0602530:CDS |
| ATGAACCCAAAATAAGAGCA+AGG | 0.640566 | 4_2:+46226594 | None:intergenic |
| CAGCATATTTCTCAACAAGT+GGG | 0.640937 | 4_2:+46226975 | None:intergenic |
| ATGCGTAAAGAGCAACATTG+GGG | 0.644752 | 4_2:+46226439 | None:intergenic |
| AGGCTGTTGAGAAGGCGAAG+AGG | 0.646869 | 4_2:-46229191 | Msa0602530:CDS |
| AACAACACGTAGTTATAAGG+AGG | 0.649629 | 4_2:+46229551 | None:intergenic |
| ATGTGTTTGGCAAAGCTATG+GGG | 0.650358 | 4_2:-46227601 | Msa0602530:CDS |
| AATTTGGACGTGTGAATACA+CGG | 0.651495 | 4_2:+46229660 | None:intergenic |
| AGTCAATACATACAATGGTG+TGG | 0.652135 | 4_2:+46227543 | None:intergenic |
| AAGGCGAAGAGGAAGCTCAG+AGG | 0.652638 | 4_2:-46229180 | Msa0602530:CDS |
| CTTGCTCATGGTGCTAACAA+CGG | 0.654051 | 4_2:-46228640 | Msa0602530:CDS |
| TGGTGCTTGATGGTTCCGAA+AGG | 0.654886 | 4_2:+46228670 | None:intergenic |
| GTTTGCAGAAGCCTGAGGAA+CGG | 0.655819 | 4_2:-46226669 | Msa0602530:exon |
| TTGTTGGGTGGTGAGAAGGA+AGG | 0.658316 | 4_2:-46227049 | Msa0602530:CDS |
| GAAGCCTGAGGAACGGTGTG+TGG | 0.659491 | 4_2:-46226662 | Msa0602530:exon |
| AACGTACCTCCCTACCGGGG+TGG | 0.660383 | 4_2:+46228401 | None:intergenic |
| ATGATTAGGGAGTTGTTGGG+TGG | 0.662546 | 4_2:-46227061 | Msa0602530:intron |
| CACAGGTTTGCAGAAGCCTG+AGG | 0.670333 | 4_2:-46226674 | Msa0602530:intron |
| ACGGTGTGATTTGATTGGGT+GGG | 0.674529 | 4_2:+46229679 | None:intergenic |
| CATATTTCTCAACAAGTGGG+CGG | 0.689114 | 4_2:+46226978 | None:intergenic |
| TTTGCTAGACATGATGAACG+TGG | 0.694653 | 4_2:-46226545 | Msa0602530:three_prime_UTR |
| TGCGTAAAGAGCAACATTGG+GGG | 0.714453 | 4_2:+46226440 | None:intergenic |
| GTTGGATGGATAAGATCGTG+GGG | 0.723472 | 4_2:+46229602 | None:intergenic |
| GTAAACGTACCTCCCTACCG+GGG | 0.769408 | 4_2:+46228398 | None:intergenic |
| TGAACCCTAACAGTGACACG+AGG | 0.770546 | 4_2:+46229485 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAACTCA+AGG | + | chr4_2:46227928-46227947 | None:intergenic | 10.0% |
| !! | CCAAATATAAAAAATAAATA+GGG | + | chr4_2:46228314-46228333 | None:intergenic | 10.0% |
| !! | TCCAAATATAAAAAATAAAT+AGG | + | chr4_2:46228315-46228334 | None:intergenic | 10.0% |
| !!! | TATTTATTTTTTATATTTGG+AGG | - | chr4_2:46228314-46228333 | Msa0602530:intron | 10.0% |
| !!! | ATTATCTAAGTTTTAAATTA+TGG | - | chr4_2:46228728-46228747 | Msa0602530:intron | 10.0% |
| !! | TTAAAACACAAAAAAAAATA+GGG | + | chr4_2:46229013-46229032 | None:intergenic | 10.0% |
| !!! | TTTAAAACACAAAAAAAAAT+AGG | + | chr4_2:46229014-46229033 | None:intergenic | 10.0% |
| !! | AATATATATATTTATCTTCA+AGG | - | chr4_2:46229357-46229376 | Msa0602530:intron | 10.0% |
| !!! | ATCTGTTTGAATATTTTTTT+GGG | - | chr4_2:46227215-46227234 | Msa0602530:CDS | 15.0% |
| !!! | CCCTATTTATTTTTTATATT+TGG | - | chr4_2:46228311-46228330 | Msa0602530:intron | 15.0% |
| !!! | ATTATCAAAGTTTTAAACTA+TGG | - | chr4_2:46228664-46228683 | Msa0602530:CDS | 15.0% |
| !! | AGGAATATTAAATATACATA+CGG | + | chr4_2:46229176-46229195 | None:intergenic | 15.0% |
| !! | AAGATTAAGAAAATGTTGAA+AGG | + | chr4_2:46226377-46226396 | None:intergenic | 20.0% |
| !! | AGAAAAATAAGCTCAAAAAA+TGG | + | chr4_2:46226792-46226811 | None:intergenic | 20.0% |
| !!! | ATTTTCTGCTTATTTTTTGT+AGG | - | chr4_2:46227022-46227041 | Msa0602530:CDS | 20.0% |
| !!! | ATGATTTGTTTGAGATTTTT+TGG | - | chr4_2:46227187-46227206 | Msa0602530:CDS | 20.0% |
| !!! | GATCTGTTTGAATATTTTTT+TGG | - | chr4_2:46227214-46227233 | Msa0602530:CDS | 20.0% |
| !!! | AATATTTTTTTGGGATGAAT+CGG | - | chr4_2:46227224-46227243 | Msa0602530:CDS | 20.0% |
| !! | ATTTCAGTCATTTATTTATG+TGG | - | chr4_2:46227630-46227649 | Msa0602530:intron | 20.0% |
| !!! | ATGATGTTTCTTTAACTTTT+TGG | - | chr4_2:46227809-46227828 | Msa0602530:intron | 20.0% |
| !!! | ATGATTTGACAATCAATTTT+TGG | - | chr4_2:46227862-46227881 | Msa0602530:intron | 20.0% |
| !! | GATAATTAAACCAAAACAAA+AGG | + | chr4_2:46228349-46228368 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGGTTTAATTATC+AGG | - | chr4_2:46228349-46228368 | Msa0602530:intron | 20.0% |
| !!! | TTTAAAGTCAATACATACAA+TGG | + | chr4_2:46228590-46228609 | None:intergenic | 20.0% |
| !! | TTGGTTATACTTAATGTAAT+TGG | - | chr4_2:46228869-46228888 | Msa0602530:intron | 20.0% |
| !! | TTATACTTAATGTAATTGGT+AGG | - | chr4_2:46228873-46228892 | Msa0602530:intron | 20.0% |
| !! | TATACTTAATGTAATTGGTA+GGG | - | chr4_2:46228874-46228893 | Msa0602530:intron | 20.0% |
| !!! | AATCCTTTTCATCATATTTT+TGG | - | chr4_2:46229201-46229220 | Msa0602530:CDS | 20.0% |
| !! | TGAAATTTATGTAAGATTCA+GGG | + | chr4_2:46229507-46229526 | None:intergenic | 20.0% |
| !!! | TTAACAATGTTATTTAACAG+AGG | + | chr4_2:46229633-46229652 | None:intergenic | 20.0% |
| ! | TTAGATGGTTAAGATGAATT+TGG | + | chr4_2:46226484-46226503 | None:intergenic | 25.0% |
| !! | TTGCAGAAATTTTAAGCTAT+GGG | - | chr4_2:46226876-46226895 | Msa0602530:intron | 25.0% |
| ! | AAAATAAAACTTACGCCAAA+CGG | + | chr4_2:46227007-46227026 | None:intergenic | 25.0% |
| !!! | ATATTTTTTTGGGATGAATC+GGG | - | chr4_2:46227225-46227244 | Msa0602530:CDS | 25.0% |
| !!! | TTATGATTTGTTTGTGTAGA+TGG | - | chr4_2:46227390-46227409 | Msa0602530:intron | 25.0% |
| !!! | ATTTATGTGGTTTGTTTTTG+TGG | - | chr4_2:46227643-46227662 | Msa0602530:intron | 25.0% |
| ! | TTTCTCATTGTTGATGTAAA+TGG | - | chr4_2:46227759-46227778 | Msa0602530:intron | 25.0% |
| !! | TTTGGTTATAACTTTTCATG+TGG | - | chr4_2:46227880-46227899 | Msa0602530:intron | 25.0% |
| ! | TTCATGTGGTATATAATGAT+AGG | - | chr4_2:46227894-46227913 | Msa0602530:intron | 25.0% |
| ! | AAACGCATTTGCAATTATTA+CGG | - | chr4_2:46228025-46228044 | Msa0602530:intron | 25.0% |
| ! | AATCCAAAAACTCATTGATA+AGG | + | chr4_2:46228120-46228139 | None:intergenic | 25.0% |
| !! | TTTTATATTTGGAGGCTAAT+TGG | - | chr4_2:46228322-46228341 | Msa0602530:intron | 25.0% |
| ! | AAACAACTACAATCAATTGT+AGG | + | chr4_2:46228456-46228475 | None:intergenic | 25.0% |
| ! | TACAATTGATTGTAGTTGTT+TGG | - | chr4_2:46228455-46228474 | Msa0602530:intron | 25.0% |
| !! | ATTTGATTCTTGATTTTTGC+AGG | - | chr4_2:46228484-46228503 | Msa0602530:intron | 25.0% |
| !!! | TGCATTTGATATTTTGATAC+TGG | - | chr4_2:46228637-46228656 | Msa0602530:CDS | 25.0% |
| !!! | TGCATTTGATATTTTGATAC+TGG | - | chr4_2:46228637-46228656 | Msa0602530:CDS | 25.0% |
| ! | TTGATGTTGTTGAAATGATT+AGG | - | chr4_2:46229050-46229069 | Msa0602530:intron | 25.0% |
| ! | TGATGTTGTTGAAATGATTA+GGG | - | chr4_2:46229051-46229070 | Msa0602530:intron | 25.0% |
| ! | ATGATGAAAAGGATTATCAT+AGG | + | chr4_2:46229196-46229215 | None:intergenic | 25.0% |
| ! | ATGCCAAAAATATGATGAAA+AGG | + | chr4_2:46229207-46229226 | None:intergenic | 25.0% |
| ! | GTGAAATTTATGTAAGATTC+AGG | + | chr4_2:46229508-46229527 | None:intergenic | 25.0% |
| ! | ATAATCAAACCAAAATAGCT+GGG | + | chr4_2:46229665-46229684 | None:intergenic | 25.0% |
| AGAAAATGTTGAAAGGTCTT+GGG | + | chr4_2:46226370-46226389 | None:intergenic | 30.0% | |
| AAGAAAATGTTGAAAGGTCT+TGG | + | chr4_2:46226371-46226390 | None:intergenic | 30.0% | |
| !! | GATTGATTTGGAAAGTTAGA+TGG | + | chr4_2:46226499-46226518 | None:intergenic | 30.0% |
| TCGAAATCTAAGAAGGAAAA+TGG | + | chr4_2:46226676-46226695 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTCTTAGATTTCG+AGG | - | chr4_2:46226675-46226694 | Msa0602530:intron | 30.0% |
| ! | AACTTCGATTCTGAGAAAAT+AGG | + | chr4_2:46226734-46226753 | None:intergenic | 30.0% |
| ! | GTTGCAGAAATTTTAAGCTA+TGG | - | chr4_2:46226875-46226894 | Msa0602530:intron | 30.0% |
| !!! | ATCGGGTGCAATTTTTTTTT+TGG | - | chr4_2:46227242-46227261 | Msa0602530:intron | 30.0% |
| TTTGATTCAAAGACAAAGAC+TGG | - | chr4_2:46227428-46227447 | Msa0602530:intron | 30.0% | |
| AATCAGCATAGCTAATGATT+GGG | + | chr4_2:46227556-46227575 | None:intergenic | 30.0% | |
| AAATCAGCATAGCTAATGAT+TGG | + | chr4_2:46227557-46227576 | None:intergenic | 30.0% | |
| AAATACAACAAATCACTACC+TGG | + | chr4_2:46227583-46227602 | None:intergenic | 30.0% | |
| ! | AGTCCTTATCAATGAGTTTT+TGG | - | chr4_2:46228114-46228133 | Msa0602530:intron | 30.0% |
| TGGATTTCATACATTTCTGT+TGG | - | chr4_2:46228134-46228153 | Msa0602530:intron | 30.0% | |
| AATTAACCACATGTGATAAC+TGG | - | chr4_2:46228243-46228262 | Msa0602530:intron | 30.0% | |
| TTTAAATTATGGCTGCATTG+TGG | - | chr4_2:46228739-46228758 | Msa0602530:intron | 30.0% | |
| TATGAGTTGTCAAAAATGAG+AGG | + | chr4_2:46228949-46228968 | None:intergenic | 30.0% | |
| CACAAAAAAAAATAGGGCAT+GGG | + | chr4_2:46229007-46229026 | None:intergenic | 30.0% | |
| ACACAAAAAAAAATAGGGCA+TGG | + | chr4_2:46229008-46229027 | None:intergenic | 30.0% | |
| GATAATCAAACCAAAATAGC+TGG | + | chr4_2:46229666-46229685 | None:intergenic | 30.0% | |
| ! | AGAACTTGAAAGACAACTTT+TGG | + | chr4_2:46229714-46229733 | None:intergenic | 30.0% |
| ATACACGGTGTGATTTGATT+GGG | + | chr4_2:46226453-46226472 | None:intergenic | 35.0% | |
| AATACACGGTGTGATTTGAT+TGG | + | chr4_2:46226454-46226473 | None:intergenic | 35.0% | |
| AATTTGGACGTGTGAATACA+CGG | + | chr4_2:46226468-46226487 | None:intergenic | 35.0% | |
| AACAACACGTAGTTATAAGG+AGG | + | chr4_2:46226577-46226596 | None:intergenic | 35.0% | |
| ACGAACAACACGTAGTTATA+AGG | + | chr4_2:46226580-46226599 | None:intergenic | 35.0% | |
| !! | TGTTTTTGTGGTTATGCAGT+TGG | - | chr4_2:46227655-46227674 | Msa0602530:intron | 35.0% |
| ATTGCAAATGCGTTTCAAAC+AGG | + | chr4_2:46228020-46228039 | None:intergenic | 35.0% | |
| CTACAGACAACTTTCAAAAC+AGG | + | chr4_2:46228096-46228115 | None:intergenic | 35.0% | |
| TTGCAATGCTATCTACAAGT+TGG | + | chr4_2:46228163-46228182 | None:intergenic | 35.0% | |
| !! | GCATTTCTAGTTATCACATG+AGG | + | chr4_2:46228198-46228217 | None:intergenic | 35.0% |
| !! | GCTAATTGGTCCTTTTGTTT+TGG | - | chr4_2:46228336-46228355 | Msa0602530:intron | 35.0% |
| AGTCAATACATACAATGGTG+TGG | + | chr4_2:46228585-46228604 | None:intergenic | 35.0% | |
| TTTAAACTATGGCTGCATTG+TGG | - | chr4_2:46228675-46228694 | Msa0602530:CDS | 35.0% | |
| TGAAATGATTAGGGAGTTGT+TGG | - | chr4_2:46229060-46229079 | Msa0602530:intron | 35.0% | |
| GAAATGATTAGGGAGTTGTT+GGG | - | chr4_2:46229061-46229080 | Msa0602530:intron | 35.0% | |
| CAGCATATTTCTCAACAAGT+GGG | + | chr4_2:46229153-46229172 | None:intergenic | 35.0% | |
| TCTCATTTGTCAATGATTGC+AGG | - | chr4_2:46229267-46229286 | Msa0602530:intron | 35.0% | |
| ATCAAAAGCTATCTGAGCTT+GGG | - | chr4_2:46229326-46229345 | Msa0602530:intron | 35.0% | |
| !!! | TGTTGTGTTTTTTACCACAC+AGG | - | chr4_2:46229434-46229453 | Msa0602530:intron | 35.0% |
| !!! | ACAGACCTTGCTCTTATTTT+GGG | - | chr4_2:46229526-46229545 | Msa0602530:five_prime_UTR | 35.0% |
| ATGAACCCAAAATAAGAGCA+AGG | + | chr4_2:46229534-46229553 | None:intergenic | 35.0% | |
| !!! | TATTTTGGGTTCATCGAAGT+TGG | - | chr4_2:46229540-46229559 | Msa0602530:five_prime_UTR | 35.0% |
| !!! | ATTTTGGGTTCATCGAAGTT+GGG | - | chr4_2:46229541-46229560 | Msa0602530:five_prime_UTR | 35.0% |
| ! | GTGATAATTCCCAGCTATTT+TGG | - | chr4_2:46229653-46229672 | Msa0602530:five_prime_UTR | 35.0% |
| ! | TTCGTCAATGATGACGAATG+AGG | + | chr4_2:46226416-46226435 | None:intergenic | 40.0% |
| TCGTGGGGTTATGATTGATT+TGG | + | chr4_2:46226511-46226530 | None:intergenic | 40.0% | |
| !! | AAGGAGGAGAAAGTTCTAGA+GGG | + | chr4_2:46226561-46226580 | None:intergenic | 40.0% |
| ! | TAAGGAGGAGAAAGTTCTAG+AGG | + | chr4_2:46226562-46226581 | None:intergenic | 40.0% |
| ACTCACCTCGAAATCTAAGA+AGG | + | chr4_2:46226683-46226702 | None:intergenic | 40.0% | |
| !! | CTTTTGGTAATCAGCACTCA+CGG | + | chr4_2:46226916-46226935 | None:intergenic | 40.0% |
| TTACCAAAAGGCTGTTGAGA+AGG | - | chr4_2:46226926-46226945 | Msa0602530:intron | 40.0% | |
| GATTCAAAGACAAAGACTGG+TGG | - | chr4_2:46227431-46227450 | Msa0602530:intron | 40.0% | |
| ! | TGATATCGCTGTTAGGCTTT+TGG | - | chr4_2:46227511-46227530 | Msa0602530:intron | 40.0% |
| ATTGGGAATTGCTCCTTAAG+AGG | + | chr4_2:46227539-46227558 | None:intergenic | 40.0% | |
| !! | TAGCTATGCTGATTTCTACC+AGG | - | chr4_2:46227562-46227581 | Msa0602530:CDS | 40.0% |
| ! | GTTGTTGCTGTTGAGATTAC+TGG | - | chr4_2:46227683-46227702 | Msa0602530:intron | 40.0% |
| !! | GGAGGTACGTTTACTACTTT+TGG | - | chr4_2:46227736-46227755 | Msa0602530:CDS | 40.0% |
| TCTAGTTATCACATGAGGAC+AGG | + | chr4_2:46228193-46228212 | None:intergenic | 40.0% | |
| GCATTTCCAGTTATCACATG+TGG | + | chr4_2:46228252-46228271 | None:intergenic | 40.0% | |
| AAATCCAGAACACTAACCCT+TGG | + | chr4_2:46228417-46228436 | None:intergenic | 40.0% | |
| GATGTGTTTGGCAAAGCTAT+GGG | - | chr4_2:46228523-46228542 | Msa0602530:intron | 40.0% | |
| ATGTGTTTGGCAAAGCTATG+GGG | - | chr4_2:46228524-46228543 | Msa0602530:intron | 40.0% | |
| ! | CGTTGAGATTGTGACTGTTT+TGG | - | chr4_2:46228850-46228869 | Msa0602530:intron | 40.0% |
| TGAGAGGATTAGAAGTCCAT+GGG | + | chr4_2:46228933-46228952 | None:intergenic | 40.0% | |
| ATGAGAGGATTAGAAGTCCA+TGG | + | chr4_2:46228934-46228953 | None:intergenic | 40.0% | |
| TATCACTTGGCAACTGAAGA+AGG | + | chr4_2:46229102-46229121 | None:intergenic | 40.0% | |
| TCTTCAGTTGCCAAGTGATA+AGG | - | chr4_2:46229102-46229121 | Msa0602530:intron | 40.0% | |
| !! | CTCAAAAGTGCCTTATCACT+TGG | + | chr4_2:46229115-46229134 | None:intergenic | 40.0% |
| CATATTTCTCAACAAGTGGG+CGG | + | chr4_2:46229150-46229169 | None:intergenic | 40.0% | |
| GCAGCATATTTCTCAACAAG+TGG | + | chr4_2:46229154-46229173 | None:intergenic | 40.0% | |
| ! | TTTCTTTGCTGATTATGCCG+AGG | - | chr4_2:46229300-46229319 | Msa0602530:intron | 40.0% |
| ! | AGATAGCTTTTGATGAGCCT+CGG | + | chr4_2:46229320-46229339 | None:intergenic | 40.0% |
| CATCAAAAGCTATCTGAGCT+TGG | - | chr4_2:46229325-46229344 | Msa0602530:intron | 40.0% | |
| TTAAGTTCCGCATTATCCAC+TGG | - | chr4_2:46229400-46229419 | Msa0602530:intron | 40.0% | |
| TAAGTTCCGCATTATCCACT+GGG | - | chr4_2:46229401-46229420 | Msa0602530:intron | 40.0% | |
| !! | CACAGACCTTGCTCTTATTT+TGG | - | chr4_2:46229525-46229544 | Msa0602530:five_prime_UTR | 40.0% |
| ! | CATCGAAGTTGGGTAGTTTT+TGG | - | chr4_2:46229551-46229570 | Msa0602530:five_prime_UTR | 40.0% |
| TTTGCTAGACATGATGAACG+TGG | - | chr4_2:46229580-46229599 | Msa0602530:five_prime_UTR | 40.0% | |
| ATGCGTAAAGAGCAACATTG+GGG | + | chr4_2:46229689-46229708 | None:intergenic | 40.0% | |
| CATGCGTAAAGAGCAACATT+GGG | + | chr4_2:46229690-46229709 | None:intergenic | 40.0% | |
| ACATGCGTAAAGAGCAACAT+TGG | + | chr4_2:46229691-46229710 | None:intergenic | 40.0% | |
| CGTCTAGCGTTTAATTGTCT+TGG | - | chr4_2:46229734-46229753 | Msa0602530:five_prime_UTR | 40.0% | |
| TTTGATTGGGTGGGTGAAGT+AGG | + | chr4_2:46226440-46226459 | None:intergenic | 45.0% | |
| ACGGTGTGATTTGATTGGGT+GGG | + | chr4_2:46226449-46226468 | None:intergenic | 45.0% | |
| GTTGGATGGATAAGATCGTG+GGG | + | chr4_2:46226526-46226545 | None:intergenic | 45.0% | |
| CGTTGGATGGATAAGATCGT+GGG | + | chr4_2:46226527-46226546 | None:intergenic | 45.0% | |
| !! | AGGAGGAGAAAGTTCTAGAG+GGG | + | chr4_2:46226560-46226579 | None:intergenic | 45.0% |
| ACACGCTCTTTCTTCACTCT+TGG | - | chr4_2:46226607-46226626 | Msa0602530:three_prime_UTR | 45.0% | |
| !! | CGTGAGTGCTGATTACCAAA+AGG | - | chr4_2:46226914-46226933 | Msa0602530:intron | 45.0% |
| ACAAAGACTGGTGGTCCTTT+CGG | - | chr4_2:46227440-46227459 | Msa0602530:intron | 45.0% | |
| ! | CTTGCTCATGGTGCTAACAA+CGG | - | chr4_2:46227485-46227504 | Msa0602530:intron | 45.0% |
| ACGGTCTTGATATCGCTGTT+AGG | - | chr4_2:46227504-46227523 | Msa0602530:intron | 45.0% | |
| !!! | TAGGCTTTTGGAGCCTCTTA+AGG | - | chr4_2:46227523-46227542 | Msa0602530:intron | 45.0% |
| TTTGTGGTTATGCAGTTGGC+TGG | - | chr4_2:46227659-46227678 | Msa0602530:intron | 45.0% | |
| ! | GTTGCTGTTGAGATTACTGG+TGG | - | chr4_2:46227686-46227705 | Msa0602530:intron | 45.0% |
| TAGTAAACGTACCTCCCTAC+CGG | + | chr4_2:46227732-46227751 | None:intergenic | 45.0% | |
| TGTCTTGCAGTTCACGTTCT+TGG | - | chr4_2:46228056-46228075 | Msa0602530:intron | 45.0% | |
| ! | TTGCAGGTTCTGACCATTTG+AGG | - | chr4_2:46228500-46228519 | Msa0602530:intron | 45.0% |
| ! | TGCAGGTTCTGACCATTTGA+GGG | - | chr4_2:46228501-46228520 | Msa0602530:intron | 45.0% |
| GACCATTTGAGGGATGTGTT+TGG | - | chr4_2:46228511-46228530 | Msa0602530:intron | 45.0% | |
| TGCCAAACACATCCCTCAAA+TGG | + | chr4_2:46228516-46228535 | None:intergenic | 45.0% | |
| GGATGTGTTTGGCAAAGCTA+TGG | - | chr4_2:46228522-46228541 | Msa0602530:intron | 45.0% | |
| !! | AAGGAGCGTTCTGGATTTGA+GGG | - | chr4_2:46228907-46228926 | Msa0602530:intron | 45.0% |
| ATGATTAGGGAGTTGTTGGG+TGG | - | chr4_2:46229064-46229083 | Msa0602530:intron | 45.0% | |
| TCAACTCCCAGTGGATAATG+CGG | + | chr4_2:46229410-46229429 | None:intergenic | 45.0% | |
| CAACATGAATCAACTCCCAG+TGG | + | chr4_2:46229419-46229438 | None:intergenic | 45.0% | |
| TGCGTAAAGAGCAACATTGG+GGG | + | chr4_2:46229688-46229707 | None:intergenic | 45.0% | |
| CACGGTGTGATTTGATTGGG+TGG | + | chr4_2:46226450-46226469 | None:intergenic | 50.0% | |
| GCGTTGGATGGATAAGATCG+TGG | + | chr4_2:46226528-46226547 | None:intergenic | 50.0% | |
| !! | AGTTCTAGAGGGGGATTGTG+AGG | + | chr4_2:46226550-46226569 | None:intergenic | 50.0% |
| !! | GGAGGAGAAAGTTCTAGAGG+GGG | + | chr4_2:46226559-46226578 | None:intergenic | 50.0% |
| ! | CTCTCCTCGTGTCACTGTTA+GGG | - | chr4_2:46226636-46226655 | Msa0602530:three_prime_UTR | 50.0% |
| TGAACCCTAACAGTGACACG+AGG | + | chr4_2:46226643-46226662 | None:intergenic | 50.0% | |
| GGTAATCAGCACTCACGGTT+GGG | + | chr4_2:46226911-46226930 | None:intergenic | 50.0% | |
| TGGTAATCAGCACTCACGGT+TGG | + | chr4_2:46226912-46226931 | None:intergenic | 50.0% | |
| ! | TCGCCTTCTCAACAGCCTTT+TGG | + | chr4_2:46226932-46226951 | None:intergenic | 50.0% |
| TACGCCAAACGGAGCATAAG+AGG | + | chr4_2:46226996-46227015 | None:intergenic | 50.0% | |
| TTGTGTAGATGGCACTCTGC+TGG | - | chr4_2:46227401-46227420 | Msa0602530:intron | 50.0% | |
| ! | TGGTGCTTGATGGTTCCGAA+AGG | + | chr4_2:46227458-46227477 | None:intergenic | 50.0% |
| !! | AAGCTCAGCTTGGTGCTTGA+TGG | + | chr4_2:46227468-46227487 | None:intergenic | 50.0% |
| AGTAAACGTACCTCCCTACC+GGG | + | chr4_2:46227731-46227750 | None:intergenic | 50.0% | |
| TCCAGAACACTAACCCTTGG+TGG | + | chr4_2:46228414-46228433 | None:intergenic | 50.0% | |
| !! | CAAGGAGCGTTCTGGATTTG+AGG | - | chr4_2:46228906-46228925 | Msa0602530:intron | 50.0% |
| TTGTTGGGTGGTGAGAAGGA+AGG | - | chr4_2:46229076-46229095 | Msa0602530:intron | 50.0% | |
| CAACAAGTGGGCGGAATACA+GGG | + | chr4_2:46229141-46229160 | None:intergenic | 50.0% | |
| TCAACAAGTGGGCGGAATAC+AGG | + | chr4_2:46229142-46229161 | None:intergenic | 50.0% | |
| GTTTGCAGAAGCCTGAGGAA+CGG | - | chr4_2:46229456-46229475 | Msa0602530:five_prime_UTR | 50.0% | |
| AACGGTGTGTGGTGTTTGAG+AGG | - | chr4_2:46229474-46229493 | Msa0602530:five_prime_UTR | 50.0% | |
| TGTGTGGTGTTTGAGAGGCA+TGG | - | chr4_2:46229479-46229498 | Msa0602530:five_prime_UTR | 50.0% | |
| ! | GCTCTCCTCGTGTCACTGTT+AGG | - | chr4_2:46226635-46226654 | Msa0602530:three_prime_UTR | 55.0% |
| AGGCTGTTGAGAAGGCGAAG+AGG | - | chr4_2:46226934-46226953 | Msa0602530:intron | 55.0% | |
| AAGGCGAAGAGGAAGCTCAG+AGG | - | chr4_2:46226945-46226964 | Msa0602530:intron | 55.0% | |
| CGCTCCTCTTATGCTCCGTT+TGG | - | chr4_2:46226989-46227008 | Msa0602530:CDS | 55.0% | |
| ! | CACCAAGCTGAGCTTGCTCA+TGG | - | chr4_2:46227473-46227492 | Msa0602530:intron | 55.0% |
| CACCATGAGCAAGCTCAGCT+TGG | + | chr4_2:46227478-46227497 | None:intergenic | 55.0% | |
| CCTGAAGTTCCTTTCCACCC+CGG | - | chr4_2:46227710-46227729 | Msa0602530:intron | 55.0% | |
| AAGTTCCTTTCCACCCCGGT+AGG | - | chr4_2:46227714-46227733 | Msa0602530:intron | 55.0% | |
| AGTTCCTTTCCACCCCGGTA+GGG | - | chr4_2:46227715-46227734 | Msa0602530:intron | 55.0% | |
| GTAAACGTACCTCCCTACCG+GGG | + | chr4_2:46227730-46227749 | None:intergenic | 55.0% | |
| ! | CACTAACCCTTGGTGGCATC+AGG | + | chr4_2:46228407-46228426 | None:intergenic | 55.0% |
| ! | GCCACCAAGGGTTAGTGTTC+TGG | - | chr4_2:46228410-46228429 | Msa0602530:CDS | 55.0% |
| AGCTATGGGGCTTAGTGACC+AGG | - | chr4_2:46228537-46228556 | Msa0602530:intron | 55.0% | |
| CAGACAGAGCAACGATGTCC+TGG | + | chr4_2:46228558-46228577 | None:intergenic | 55.0% | |
| CAGGACATCGTTGCTCTGTC+TGG | - | chr4_2:46228556-46228575 | Msa0602530:intron | 55.0% | |
| GACATCGTTGCTCTGTCTGG+TGG | - | chr4_2:46228559-46228578 | Msa0602530:intron | 55.0% | |
| TTGGTAGGGAGCTGCACACA+AGG | - | chr4_2:46228888-46228907 | Msa0602530:intron | 55.0% | |
| ! | GTTCTGGATTTGAGGGCCCA+TGG | - | chr4_2:46228914-46228933 | Msa0602530:intron | 55.0% |
| GGAGTTGTTGGGTGGTGAGA+AGG | - | chr4_2:46229072-46229091 | Msa0602530:intron | 55.0% | |
| CAGGCTTCTGCAAACCTGTG+TGG | + | chr4_2:46229451-46229470 | None:intergenic | 55.0% | |
| CACAGGTTTGCAGAAGCCTG+AGG | - | chr4_2:46229451-46229470 | Msa0602530:five_prime_UTR | 55.0% | |
| AACACCACACACCGTTCCTC+AGG | + | chr4_2:46229470-46229489 | None:intergenic | 55.0% | |
| !! | GGGGATTGTGAGGCGTTGGA+TGG | + | chr4_2:46226540-46226559 | None:intergenic | 60.0% |
| AGAGGGGGATTGTGAGGCGT+TGG | + | chr4_2:46226544-46226563 | None:intergenic | 60.0% | |
| CCGGGGTGGAAAGGAACTTC+AGG | + | chr4_2:46227713-46227732 | None:intergenic | 60.0% | |
| AAGCCTGAGCCACCACCAGA+GGG | - | chr4_2:46228374-46228393 | Msa0602530:intron | 60.0% | |
| TCGCTTGCCTGATGCCACCA+AGG | - | chr4_2:46228397-46228416 | Msa0602530:intron | 60.0% | |
| CGCTTGCCTGATGCCACCAA+GGG | - | chr4_2:46228398-46228417 | Msa0602530:intron | 60.0% | |
| !! | GCTGCACACAAGGAGCGTTC+TGG | - | chr4_2:46228898-46228917 | Msa0602530:intron | 60.0% |
| GAAGCCTGAGGAACGGTGTG+TGG | - | chr4_2:46229463-46229482 | Msa0602530:five_prime_UTR | 60.0% | |
| TCCTTTCCACCCCGGTAGGG+AGG | - | chr4_2:46227718-46227737 | Msa0602530:intron | 65.0% | |
| ACCTCCCTACCGGGGTGGAA+AGG | + | chr4_2:46227722-46227741 | None:intergenic | 65.0% | |
| AACGTACCTCCCTACCGGGG+TGG | + | chr4_2:46227727-46227746 | None:intergenic | 65.0% | |
| CAAGCCTGAGCCACCACCAG+AGG | - | chr4_2:46228373-46228392 | Msa0602530:intron | 65.0% | |
| TCAGGCAAGCGACCCTCTGG+TGG | + | chr4_2:46228389-46228408 | None:intergenic | 65.0% | |
| GCATCAGGCAAGCGACCCTC+TGG | + | chr4_2:46228392-46228411 | None:intergenic | 65.0% | |
| !! | CGACCCTCTGGTGGTGGCTC+AGG | + | chr4_2:46228380-46228399 | None:intergenic | 70.0% |
| GGCAAGCGACCCTCTGGTGG+TGG | + | chr4_2:46228386-46228405 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 46226361 | 46229786 | 46226361 | ID=Msa0602530;Name=Msa0602530 |
| chr4_2 | mRNA | 46226361 | 46229786 | 46226361 | ID=Msa0602530-mRNA-1;Parent=Msa0602530;Name=Msa0602530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=348|1|1|1|0.88|0.8|10|315|250 |
| chr4_2 | exon | 46226361 | 46226691 | 46226361 | ID=Msa0602530-mRNA-1:exon:10485;Parent=Msa0602530-mRNA-1 |
| chr4_2 | exon | 46226800 | 46226858 | 46226800 | ID=Msa0602530-mRNA-1:exon:10484;Parent=Msa0602530-mRNA-1 |
| chr4_2 | exon | 46226973 | 46227075 | 46226973 | ID=Msa0602530-mRNA-1:exon:10483;Parent=Msa0602530-mRNA-1 |
| chr4_2 | exon | 46227173 | 46227252 | 46227173 | ID=Msa0602530-mRNA-1:exon:10482;Parent=Msa0602530-mRNA-1 |
| chr4_2 | exon | 46227556 | 46227641 | 46227556 | ID=Msa0602530-mRNA-1:exon:10481;Parent=Msa0602530-mRNA-1 |
| chr4_2 | exon | 46227728 | 46227776 | 46227728 | ID=Msa0602530-mRNA-1:exon:10480;Parent=Msa0602530-mRNA-1 |
| chr4_2 | exon | 46228408 | 46228473 | 46228408 | ID=Msa0602530-mRNA-1:exon:10479;Parent=Msa0602530-mRNA-1 |
| chr4_2 | exon | 46228564 | 46228738 | 46228564 | ID=Msa0602530-mRNA-1:exon:10478;Parent=Msa0602530-mRNA-1 |
| chr4_2 | exon | 46229135 | 46229265 | 46229135 | ID=Msa0602530-mRNA-1:exon:10477;Parent=Msa0602530-mRNA-1 |
| chr4_2 | exon | 46229451 | 46229786 | 46229451 | ID=Msa0602530-mRNA-1:exon:10476;Parent=Msa0602530-mRNA-1 |
| chr4_2 | five_prime_UTR | 46229451 | 46229786 | 46229451 | ID=Msa0602530-mRNA-1:five_prime_utr;Parent=Msa0602530-mRNA-1 |
| chr4_2 | five_prime_UTR | 46229254 | 46229265 | 46229254 | ID=Msa0602530-mRNA-1:five_prime_utr;Parent=Msa0602530-mRNA-1 |
| chr4_2 | CDS | 46229135 | 46229253 | 46229135 | ID=Msa0602530-mRNA-1:cds;Parent=Msa0602530-mRNA-1 |
| chr4_2 | CDS | 46228564 | 46228738 | 46228564 | ID=Msa0602530-mRNA-1:cds;Parent=Msa0602530-mRNA-1 |
| chr4_2 | CDS | 46228408 | 46228473 | 46228408 | ID=Msa0602530-mRNA-1:cds;Parent=Msa0602530-mRNA-1 |
| chr4_2 | CDS | 46227728 | 46227776 | 46227728 | ID=Msa0602530-mRNA-1:cds;Parent=Msa0602530-mRNA-1 |
| chr4_2 | CDS | 46227556 | 46227641 | 46227556 | ID=Msa0602530-mRNA-1:cds;Parent=Msa0602530-mRNA-1 |
| chr4_2 | CDS | 46227173 | 46227252 | 46227173 | ID=Msa0602530-mRNA-1:cds;Parent=Msa0602530-mRNA-1 |
| chr4_2 | CDS | 46226973 | 46227075 | 46226973 | ID=Msa0602530-mRNA-1:cds;Parent=Msa0602530-mRNA-1 |
| chr4_2 | CDS | 46226800 | 46226858 | 46226800 | ID=Msa0602530-mRNA-1:cds;Parent=Msa0602530-mRNA-1 |
| chr4_2 | CDS | 46226676 | 46226691 | 46226676 | ID=Msa0602530-mRNA-1:cds;Parent=Msa0602530-mRNA-1 |
| chr4_2 | three_prime_UTR | 46226361 | 46226675 | 46226361 | ID=Msa0602530-mRNA-1:three_prime_utr;Parent=Msa0602530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
