AlfalfaGEDB | Msa0242700

M. sativa cultivar zhongmu-4 / Msa0242700

KEGG: -
GO: -
PFAM: PF00407.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242700	XP_003594829.2	74.434	309	40	2	141	410	8	316	6.14e-148	432
Msa0242700	XP_003594829.2	80.130	307	21	2	1	267	1	307	4.30e-159	461

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242700	sp\|P93333\|PR101_MEDTR	100.000	141	0	0	1	141	1	141	2.00e-92	278
Msa0242700	sp\|P93333\|PR101_MEDTR	87.324	142	18	0	269	410	16	157	2.07e-80	247
Msa0242700	sp\|P93333\|PR101_MEDTR	75.177	141	21	1	141	267	8	148	2.24e-63	203

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242700	A0A498I8U2	45.116	430	192	9	1	400	1	416	3.55e-104	329
Msa0242700	A0A498I8U2	46.032	441	195	10	1	411	147	574	2.20e-109	342

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006470	Msa0242700	-0.821392	4.138560e-53	-8.615850e-47
Msa0024890	Msa0242700	0.830785	2.415519e-55	-8.615850e-47
Msa0025370	Msa0242700	0.810018	1.419873e-50	-8.615850e-47
Msa0030030	Msa0242700	-0.801590	8.381430e-49	-8.615850e-47
Msa0034310	Msa0242700	0.855005	8.429266e-62	-8.615850e-47
Msa0048950	Msa0242700	0.818465	1.932909e-52	-8.615850e-47
Msa0051100	Msa0242700	-0.813239	2.830978e-51	-8.615850e-47
Msa0059880	Msa0242700	0.842161	3.062564e-58	-8.615850e-47
Msa0081310	Msa0242700	0.864916	8.615040e-65	-8.615850e-47
Msa0090280	Msa0242700	0.804515	2.082093e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242700	MtrunA17_Chr2g0295021	100.000	141	0	0	1	141	1	141	1.47e-93	278
Msa0242700	MtrunA17_Chr2g0295021	87.324	142	18	0	269	410	16	157	1.53e-81	247
Msa0242700	MtrunA17_Chr2g0295021	75.177	141	21	1	141	267	8	148	1.65e-64	203
Msa0242700	MtrunA17_Chr2g0295001	100.000	141	0	0	1	141	1	141	1.47e-93	278
Msa0242700	MtrunA17_Chr2g0295001	87.324	142	18	0	269	410	16	157	1.53e-81	247
Msa0242700	MtrunA17_Chr2g0295001	75.177	141	21	1	141	267	8	148	1.65e-64	203
Msa0242700	MtrunA17_Chr2g0295051	96.479	142	5	0	269	410	16	157	3.72e-92	274
Msa0242700	MtrunA17_Chr2g0295051	86.525	141	19	0	1	141	1	141	8.25e-80	243
Msa0242700	MtrunA17_Chr2g0295051	76.596	141	19	1	141	267	8	148	8.09e-65	204
Msa0242700	MtrunA17_Chr2g0295064	85.315	143	21	0	269	411	83	225	3.80e-83	254

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 112 sgRNAs with CRISPR-Local

Find 617 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATTGACATTGTTGA+AGG	0.419014	2_2:+19049713	Msa0242700:CDS
AAAGCTTTGTGAAGTGTAGC+AGG	0.484835	2_2:-19049644	None:intergenic
AAAGTATGATTTGCACAAAG+TGG	0.527363	2_2:+19046160	Msa0242700:CDS
AAAGTATGTGTTGCACAAAG+TGG	0.544046	2_2:+19056604	Msa0242700:CDS
AAATCAAGGGTGGCAAAGCT+AGG	0.448601	2_2:+19046363	Msa0242700:CDS
AAATTGTCTGCAGGACCAAA+TGG	0.477800	2_2:+19056719	Msa0242700:CDS
AAATTGTCTGCAGGGCCAGA+TGG	0.558648	2_2:+19046275	Msa0242700:CDS
AAATTGTCTGCAGGTCCGAA+TGG	0.591580	2_2:+19050226	Msa0242700:CDS
AACAATTTCAATACTTTGGA+TGG	0.439896	2_2:-19045519	None:intergenic
AACGAAAGTAAGTTTCTTGA+TGG	0.287513	2_2:-19045564	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTGATAACCTTATTCCAA+AGG	+	chr2_2:19045487-19045506	Msa0242700:CDS	30.0%
AACGAAAGTAAGTTTCTTGA+TGG	-	chr2_2:19045567-19045586	None:intergenic	30.0%
AAGAAACTTACTTTCGTTGA+AGG	+	chr2_2:19045569-19045588	Msa0242700:CDS	30.0%
TTCATGCAGTGAAAATTGTT+TGG	-	chr2_2:19045674-19045693	None:intergenic	30.0%
TTTCACAATCACTAACATGA+TGG	-	chr2_2:19046112-19046131	None:intergenic	30.0%
AGCTATATGCTTTAGTAATC+AGG	-	chr2_2:19046434-19046453	None:intergenic	30.0%
TATATCATGTGTGCTTGATT+TGG	+	chr2_2:19046503-19046522	Msa0242700:intron	30.0%
AAGGAAAGAGAGAATTACAT+TGG	-	chr2_2:19046532-19046551	None:intergenic	30.0%
AATGCAGGATTATAACTGAT+TGG	+	chr2_2:19047170-19047189	Msa0242700:intron	30.0%
GCATTTGAAGACAAATAAGA+TGG	+	chr2_2:19047251-19047270	Msa0242700:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	19045363	19056889	19045363	ID=Msa0242700;Name=Msa0242700
chr2_2	mRNA	19045363	19056889	19045363	ID=Msa0242700-mRNA-1;Parent=Msa0242700;Name=Msa0242700-mRNA-1;_AED=0.14;_eAED=0.14;_QI=47\|0.2\|0.16\|1\|0.4\|0.33\|6\|0\|411
chr2_2	exon	19045363	19045590	19045363	ID=Msa0242700-mRNA-1:exon:7756;Parent=Msa0242700-mRNA-1
chr2_2	exon	19046150	19046392	19046150	ID=Msa0242700-mRNA-1:exon:7757;Parent=Msa0242700-mRNA-1
chr2_2	exon	19049624	19049779	19049624	ID=Msa0242700-mRNA-1:exon:7758;Parent=Msa0242700-mRNA-1
chr2_2	exon	19050143	19050364	19050143	ID=Msa0242700-mRNA-1:exon:7759;Parent=Msa0242700-mRNA-1
chr2_2	exon	19055709	19055846	19055709	ID=Msa0242700-mRNA-1:exon:7760;Parent=Msa0242700-mRNA-1
chr2_2	exon	19056594	19056889	19056594	ID=Msa0242700-mRNA-1:exon:7761;Parent=Msa0242700-mRNA-1
chr2_2	five_prime_UTR	19045363	19045409	19045363	ID=Msa0242700-mRNA-1:five_prime_utr;Parent=Msa0242700-mRNA-1
chr2_2	CDS	19045410	19045590	19045410	ID=Msa0242700-mRNA-1:cds;Parent=Msa0242700-mRNA-1
chr2_2	CDS	19046150	19046392	19046150	ID=Msa0242700-mRNA-1:cds;Parent=Msa0242700-mRNA-1
chr2_2	CDS	19049624	19049779	19049624	ID=Msa0242700-mRNA-1:cds;Parent=Msa0242700-mRNA-1
chr2_2	CDS	19050143	19050364	19050143	ID=Msa0242700-mRNA-1:cds;Parent=Msa0242700-mRNA-1
chr2_2	CDS	19055709	19055846	19055709	ID=Msa0242700-mRNA-1:cds;Parent=Msa0242700-mRNA-1
chr2_2	CDS	19056594	19056889	19056594	ID=Msa0242700-mRNA-1:cds;Parent=Msa0242700-mRNA-1

Gene Sequence

>Msa0242700

ATGGGTGTATTCAACTTTGAGGATGAGACCACATCTATTGTAGCTCCTGCTAGACTTTACAAAGCTCTAGTTACAGATTCTGATAACCTTATTCCAAAGGTTATTGATGCCATCCAAAGTATTGAAATTGTTGAAGGAAACGGTGGCGCCGGAACCATCAAGAAACTTACTTTCGTTGAAGGTGGTGAAACAAAGTATGATTTGCACAAAGTGGACTTAGTAGATGATGTTAACTTTGCTTACAACTACAGCATAGTTGGTGGTGGTGGACTTCCAGACACAGTGGAGAAGATCTCCTTTGAGTCTAAATTGTCTGCAGGGCCAGATGGAGGATCCATTGCAAAGCTTACTGTGAAATACTTCACCAAAGGTGATGCTGCACCAAGTGAAGAGGAAATCAAGGGTGGCAAAGCTAGGGGTGATGAAACCACCTCTATTGTAGCTCCTGCTACACTTCACAAAGCTTTTGTTACAGATGCTGACAACCTTATCCCAAAGGTTGTTGATGTCATCAAAAGTATTGACATTGTTGAAGGAAATGGTGGCGCCGGAACCATCAAGAAACTCACTTTCGTTGAAGATGATGCTAACTGGGCTTACAACTACAGCATAGTTGGAGGTGATAGTCTTCCAGACACAGTAGAGAAGATTTCATTTGAAGCTAAATTGTCTGCAGGTCCGAATGGAGGATCCATTGCAAAGCTTAGTGTGAAATACTTCACCAAAGGTGATGCTACTCCTAGTGAAGAGGACCTCGAGAGTGGCAAAGCCAAGGGTGATGGTCTTTTCAAGGCCCTTGAGGTTCCTGCTACACTTTACAAAGCTCTTGTTACAGATGCTGACAACCTTACCCCAAAGGTTATTGATGCCATCAAGAGTATTGATATCGTTGAAGGAGACGGTGGCGCCGGAACCATCAAGAAAATCACTTTTGTCGAAGATGGTGAAACAAAGTATGTGTTGCACAAAGTGGACTTAGTAGATGATGTTAACTTGGCTTATCACTACAGCATAGTTGGTGGTTTTGGGCTTCCAGACACAGTGGAGAAGATCTCCTTTGAGGCTAAATTGTCTGCAGGACCAAATGGAGGAACCATTGCAAAGCTTAGTGTGAAATACTTCACAAAAGGTGATGCTGCACCAAGTGAAGAGGAACTCAAGAATGGCAAAGCTAGGGGTGATGGTCTTTTTAAGGCTCTTGAAGGTTACGTTTTGGCAAATCCTGATTACAACTAA

Protein sequence

>Msa0242700

MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVIDAIQSIEIVEGNGGAGTIKKLTFVEGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKISFESKLSAGPDGGSIAKLTVKYFTKGDAAPSEEEIKGGKARGDETTSIVAPATLHKAFVTDADNLIPKVVDVIKSIDIVEGNGGAGTIKKLTFVEDDANWAYNYSIVGGDSLPDTVEKISFEAKLSAGPNGGSIAKLSVKYFTKGDATPSEEDLESGKAKGDGLFKALEVPATLYKALVTDADNLTPKVIDAIKSIDIVEGDGGAGTIKKITFVEDGETKYVLHKVDLVDDVNLAYHYSIVGGFGLPDTVEKISFEAKLSAGPNGGTIAKLSVKYFTKGDAAPSEEELKNGKARGDGLFKALEGYVLANPDYN*