Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316270 | XP_013462770.1 | 88.618 | 246 | 12 | 2 | 1 | 230 | 1 | 246 | 2.50e-144 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316270 | sp|Q94B38|GPT2_ARATH | 69.528 | 233 | 57 | 4 | 3 | 229 | 14 | 238 | 1.76e-107 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196370 | Msa0316270 | 0.852252 | 5.215585e-61 | -8.615850e-47 |
| Msa0238260 | Msa0316270 | 0.905251 | 5.231414e-80 | -8.615850e-47 |
| Msa0238280 | Msa0316270 | 0.896147 | 4.876082e-76 | -8.615850e-47 |
| Msa0275690 | Msa0316270 | 0.931909 | 1.878077e-94 | -8.615850e-47 |
| Msa0316270 | Msa0316280 | 0.893245 | 7.522506e-75 | -8.615850e-47 |
| Msa0316270 | Msa0386740 | 0.826374 | 2.809011e-54 | -8.615850e-47 |
| Msa0316270 | Msa0479740 | 0.823690 | 1.209190e-53 | -8.615850e-47 |
| Msa0316270 | Msa0550330 | 0.853925 | 1.731047e-61 | -8.615850e-47 |
| Msa0316270 | Msa0646780 | 0.834904 | 2.288189e-56 | -8.615850e-47 |
| Msa0316270 | Msa0686360 | 0.811517 | 6.730919e-51 | -8.615850e-47 |
| Msa0316270 | Msa1368500 | 0.811283 | 7.565942e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316270 | MtrunA17_Chr2g0288011 | 88.618 | 246 | 12 | 2 | 1 | 230 | 1 | 246 | 2.29e-148 | 419 |
| Msa0316270 | MtrunA17_Chr4g0074541 | 73.251 | 243 | 52 | 2 | 1 | 230 | 1 | 243 | 1.42e-119 | 345 |
| Msa0316270 | MtrunA17_Chr3g0097931 | 72.512 | 211 | 42 | 6 | 34 | 230 | 44 | 252 | 3.72e-101 | 299 |
| Msa0316270 | MtrunA17_Chr2g0291851 | 46.667 | 180 | 91 | 3 | 50 | 229 | 69 | 243 | 1.67e-46 | 159 |
| Msa0316270 | MtrunA17_Chr4g0046561 | 46.154 | 143 | 77 | 0 | 86 | 228 | 97 | 239 | 3.63e-39 | 139 |
| Msa0316270 | MtrunA17_Chr6g0449891 | 42.690 | 171 | 91 | 1 | 60 | 230 | 92 | 255 | 7.03e-39 | 139 |
| Msa0316270 | MtrunA17_Chr5g0419001 | 36.441 | 236 | 129 | 5 | 12 | 228 | 11 | 244 | 1.31e-35 | 130 |
| Msa0316270 | MtrunA17_Chr3g0117501 | 39.548 | 177 | 98 | 3 | 53 | 228 | 82 | 250 | 1.20e-34 | 127 |
| Msa0316270 | MtrunA17_Chr4g0058971 | 42.759 | 145 | 83 | 0 | 84 | 228 | 81 | 225 | 2.68e-32 | 120 |
| Msa0316270 | MtrunA17_Chr1g0160071 | 31.655 | 139 | 91 | 3 | 95 | 229 | 21 | 159 | 2.70e-13 | 68.2 |
| Msa0316270 | MtrunA17_Chr3g0114581 | 31.655 | 139 | 91 | 3 | 95 | 229 | 22 | 160 | 3.08e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316270 | AT1G61800.1 | 69.528 | 233 | 57 | 4 | 3 | 229 | 14 | 238 | 1.79e-108 | 317 |
| Msa0316270 | AT1G61800.2 | 69.528 | 233 | 57 | 4 | 3 | 229 | 14 | 238 | 5.61e-108 | 317 |
| Msa0316270 | AT5G54800.1 | 66.087 | 230 | 58 | 4 | 10 | 230 | 21 | 239 | 3.74e-97 | 288 |
| Msa0316270 | AT5G17630.1 | 53.472 | 144 | 66 | 1 | 86 | 229 | 110 | 252 | 2.04e-47 | 161 |
| Msa0316270 | AT5G46110.1 | 38.000 | 200 | 121 | 1 | 32 | 228 | 49 | 248 | 1.67e-39 | 140 |
| Msa0316270 | AT5G46110.3 | 38.000 | 200 | 121 | 1 | 32 | 228 | 49 | 248 | 1.75e-39 | 140 |
| Msa0316270 | AT5G46110.4 | 38.000 | 200 | 121 | 1 | 32 | 228 | 49 | 248 | 2.13e-39 | 140 |
| Msa0316270 | AT5G46110.2 | 47.015 | 134 | 71 | 0 | 95 | 228 | 2 | 135 | 3.62e-38 | 134 |
| Msa0316270 | AT4G03950.1 | 54.054 | 148 | 33 | 3 | 83 | 230 | 13 | 125 | 1.15e-34 | 125 |
| Msa0316270 | AT5G33320.1 | 42.683 | 164 | 85 | 3 | 66 | 228 | 93 | 248 | 2.18e-34 | 127 |
| Msa0316270 | AT3G01550.1 | 42.177 | 147 | 85 | 0 | 84 | 230 | 75 | 221 | 4.68e-33 | 123 |
| Msa0316270 | AT3G01550.2 | 42.069 | 145 | 84 | 0 | 84 | 228 | 75 | 219 | 7.34e-33 | 122 |
| Msa0316270 | AT1G77610.1 | 31.469 | 143 | 86 | 4 | 95 | 229 | 16 | 154 | 9.93e-13 | 66.6 |
| Msa0316270 | AT1G21870.1 | 29.371 | 143 | 89 | 4 | 95 | 229 | 22 | 160 | 6.88e-12 | 64.3 |
Find 42 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGTTGATTTGGATTTA+TGG | 0.094670 | 2_4:-13194770 | Msa0316270:CDS |
| TTCTGTCACATTCTTTCTTT+TGG | 0.109741 | 2_4:+13195043 | None:intergenic |
| CTCTCATTGTTGCCAATAAT+TGG | 0.171795 | 2_4:-13194168 | Msa0316270:CDS |
| CATAAATCCAAATCAACTTT+TGG | 0.201486 | 2_4:+13194771 | None:intergenic |
| TGAAAGGTAGAGAGGTTTCT+TGG | 0.291359 | 2_4:+13195097 | None:intergenic |
| AGTGCACAACCACCAATTAT+TGG | 0.331060 | 2_4:+13194156 | None:intergenic |
| TGTTAATCTCATGGGCTACT+AGG | 0.358256 | 2_4:-13194806 | Msa0316270:CDS |
| TGAGGCCCCAAAAGTTGATT+TGG | 0.366852 | 2_4:-13194778 | Msa0316270:CDS |
| GAACTCAATTTCAATATGAT+TGG | 0.386036 | 2_4:-13194120 | None:intergenic |
| GGCAACAATGAGAGGTAAAC+TGG | 0.394912 | 2_4:+13194177 | None:intergenic |
| CTCTCATGATGTTAATCTCA+TGG | 0.396151 | 2_4:-13194815 | Msa0316270:CDS |
| TGAATGCCTTTCCTTACCCT+TGG | 0.404726 | 2_4:-13194869 | Msa0316270:CDS |
| GCAGCTCAAAAGCTCAAGAT+TGG | 0.431533 | 2_4:-13194954 | Msa0316270:intron |
| TGCACTTTATCCTTAGCTGC+TGG | 0.432875 | 2_4:-13194840 | Msa0316270:CDS |
| AGAATTGAAAATTGAGACCT+TGG | 0.444612 | 2_4:+13195170 | None:intergenic |
| CCTTGATCTATCAGCCTCAT+AGG | 0.468249 | 2_4:+13195013 | None:intergenic |
| GTAGCTGTGGCACACACAAT+TGG | 0.470268 | 2_4:-13194324 | Msa0316270:CDS |
| GTTAATCTCATGGGCTACTA+GGG | 0.492852 | 2_4:-13194805 | Msa0316270:CDS |
| TAGCTGTGGCACACACAATT+GGG | 0.496344 | 2_4:-13194323 | Msa0316270:CDS |
| CATGAGAGAACCAGCAGCTA+AGG | 0.515620 | 2_4:+13194830 | None:intergenic |
| AATGAGAGGTAAACTGGCAT+AGG | 0.525217 | 2_4:+13194183 | None:intergenic |
| CAAAATTCTCATTAAATGAA+AGG | 0.526690 | 2_4:+13195081 | None:intergenic |
| TCATTGTTGCCAATAATTGG+TGG | 0.544739 | 2_4:-13194165 | Msa0316270:CDS |
| GTGCAAGTAAGCCAAGGGTA+AGG | 0.546602 | 2_4:+13194858 | None:intergenic |
| TGAAAATGTTGAACAAAACA+TGG | 0.548707 | 2_4:-13195138 | Msa0316270:CDS |
| CTAGTATCAAGATTCATGCT+TGG | 0.552737 | 2_4:-13194216 | Msa0316270:CDS |
| GATACTAGCACACTGAAAGC+TGG | 0.555418 | 2_4:+13194231 | None:intergenic |
| ATGAGAGGTAAACTGGCATA+GGG | 0.559771 | 2_4:+13194184 | None:intergenic |
| TCTCATGATGTTAATCTCAT+GGG | 0.560361 | 2_4:-13194814 | Msa0316270:CDS |
| CCTATGAGGCTGATAGATCA+AGG | 0.566563 | 2_4:-13195013 | Msa0316270:CDS |
| GATAAAGTGCAAGTAAGCCA+AGG | 0.572550 | 2_4:+13194852 | None:intergenic |
| ATGGGCTACTAGGGTTGCTG+AGG | 0.583408 | 2_4:-13194796 | Msa0316270:CDS |
| AGCTCAATGTTAATCTCTAG+TGG | 0.590541 | 2_4:+13194990 | None:intergenic |
| TCATTAAATGAAAGGTAGAG+AGG | 0.593285 | 2_4:+13195089 | None:intergenic |
| TTCACTCACATCATCAAGAG+TGG | 0.593759 | 2_4:-13194258 | Msa0316270:CDS |
| CAAGTACATCATCACTTCCA+AGG | 0.595632 | 2_4:-13195187 | Msa0316270:CDS |
| ATTGGGTACGCAGGTAGCTG+TGG | 0.607043 | 2_4:-13194337 | Msa0316270:intron |
| GACAGAATGTCAAGCCTATG+AGG | 0.612479 | 2_4:-13195027 | Msa0316270:CDS |
| CAATTATTGGCAACAATGAG+AGG | 0.616851 | 2_4:+13194169 | None:intergenic |
| ATAAAGTGCAAGTAAGCCAA+GGG | 0.636720 | 2_4:+13194853 | None:intergenic |
| GAAAATGTTGAACAAAACAT+GGG | 0.639135 | 2_4:-13195137 | Msa0316270:CDS |
| AGTAAGCCAAGGGTAAGGAA+AGG | 0.646678 | 2_4:+13194863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTTCTAAATTATTAT+CGG | - | chr2_4:13194728-13194747 | Msa0316270:intron | 10.0% |
| !! | TTTATTACTTAAATTATTAC+TGG | - | chr2_4:13194860-13194879 | Msa0316270:CDS | 10.0% |
| !! | TTTCATTTCTAAATTATTAT+CGG | - | chr2_4:13194728-13194747 | Msa0316270:intron | 10.0% |
| !! | TTTATTACTTAAATTATTAC+TGG | - | chr2_4:13194860-13194879 | Msa0316270:CDS | 10.0% |
| !! | CAAAATTCTCATTAAATGAA+AGG | + | chr2_4:13194253-13194272 | None:intergenic | 20.0% |
| !!! | ATAAATCCAAATCAACTTTT+GGG | + | chr2_4:13194562-13194581 | None:intergenic | 20.0% |
| !! | ATTAGAATGAAAAGAAAATG+TGG | + | chr2_4:13194615-13194634 | None:intergenic | 20.0% |
| !!! | AATTTTGAAATTTCTTAGGT+GGG | + | chr2_4:13194977-13194996 | None:intergenic | 20.0% |
| !! | ACCTAAGAAATTTCAAAATT+GGG | - | chr2_4:13194977-13194996 | Msa0316270:intron | 20.0% |
| !! | CAAAATTCTCATTAAATGAA+AGG | + | chr2_4:13194253-13194272 | None:intergenic | 20.0% |
| !!! | ATAAATCCAAATCAACTTTT+GGG | + | chr2_4:13194562-13194581 | None:intergenic | 20.0% |
| !! | ATTAGAATGAAAAGAAAATG+TGG | + | chr2_4:13194615-13194634 | None:intergenic | 20.0% |
| !!! | AATTTTGAAATTTCTTAGGT+GGG | + | chr2_4:13194977-13194996 | None:intergenic | 20.0% |
| !! | ACCTAAGAAATTTCAAAATT+GGG | - | chr2_4:13194977-13194996 | Msa0316270:intron | 20.0% |
| !!! | GTTTTGTTCAACATTTTCAT+TGG | + | chr2_4:13194192-13194211 | None:intergenic | 25.0% |
| ! | TGAAAATGTTGAACAAAACA+TGG | - | chr2_4:13194193-13194212 | Msa0316270:CDS | 25.0% |
| ! | GAAAATGTTGAACAAAACAT+GGG | - | chr2_4:13194194-13194213 | Msa0316270:CDS | 25.0% |
| !! | TAAATCCAAATCAACTTTTG+GGG | + | chr2_4:13194561-13194580 | None:intergenic | 25.0% |
| !! | CATAAATCCAAATCAACTTT+TGG | + | chr2_4:13194563-13194582 | None:intergenic | 25.0% |
| !!! | CAAAAGTTGATTTGGATTTA+TGG | - | chr2_4:13194561-13194580 | Msa0316270:intron | 25.0% |
| !! | GATTTTTCTTACAGGAAAAA+GGG | + | chr2_4:13194591-13194610 | None:intergenic | 25.0% |
| !! | TGATTTTTCTTACAGGAAAA+AGG | + | chr2_4:13194592-13194611 | None:intergenic | 25.0% |
| ! | ATAAGACATATTTAGTGTCT+GGG | - | chr2_4:13194660-13194679 | Msa0316270:intron | 25.0% |
| !!! | CAATTTTGAAATTTCTTAGG+TGG | + | chr2_4:13194978-13194997 | None:intergenic | 25.0% |
| ! | CACCTAAGAAATTTCAAAAT+TGG | - | chr2_4:13194976-13194995 | Msa0316270:intron | 25.0% |
| !!! | ACCCAATTTTGAAATTTCTT+AGG | + | chr2_4:13194981-13195000 | None:intergenic | 25.0% |
| !!! | GTTTTGTTCAACATTTTCAT+TGG | + | chr2_4:13194192-13194211 | None:intergenic | 25.0% |
| ! | TGAAAATGTTGAACAAAACA+TGG | - | chr2_4:13194193-13194212 | Msa0316270:CDS | 25.0% |
| ! | GAAAATGTTGAACAAAACAT+GGG | - | chr2_4:13194194-13194213 | Msa0316270:CDS | 25.0% |
| !! | TAAATCCAAATCAACTTTTG+GGG | + | chr2_4:13194561-13194580 | None:intergenic | 25.0% |
| !! | CATAAATCCAAATCAACTTT+TGG | + | chr2_4:13194563-13194582 | None:intergenic | 25.0% |
| !!! | CAAAAGTTGATTTGGATTTA+TGG | - | chr2_4:13194561-13194580 | Msa0316270:intron | 25.0% |
| !! | GATTTTTCTTACAGGAAAAA+GGG | + | chr2_4:13194591-13194610 | None:intergenic | 25.0% |
| !! | TGATTTTTCTTACAGGAAAA+AGG | + | chr2_4:13194592-13194611 | None:intergenic | 25.0% |
| ! | ATAAGACATATTTAGTGTCT+GGG | - | chr2_4:13194660-13194679 | Msa0316270:intron | 25.0% |
| !!! | CAATTTTGAAATTTCTTAGG+TGG | + | chr2_4:13194978-13194997 | None:intergenic | 25.0% |
| ! | CACCTAAGAAATTTCAAAAT+TGG | - | chr2_4:13194976-13194995 | Msa0316270:intron | 25.0% |
| !!! | ACCCAATTTTGAAATTTCTT+AGG | + | chr2_4:13194981-13195000 | None:intergenic | 25.0% |
| AGAATTGAAAATTGAGACCT+TGG | + | chr2_4:13194164-13194183 | None:intergenic | 30.0% | |
| ! | TGTTCAACATTTTCATTGGT+TGG | + | chr2_4:13194188-13194207 | None:intergenic | 30.0% |
| TCATTAAATGAAAGGTAGAG+AGG | + | chr2_4:13194245-13194264 | None:intergenic | 30.0% | |
| ! | TCTGTCACATTCTTTCTTTT+GGG | + | chr2_4:13194290-13194309 | None:intergenic | 30.0% |
| ! | TTCTGTCACATTCTTTCTTT+TGG | + | chr2_4:13194291-13194310 | None:intergenic | 30.0% |
| ! | TTGGATTGTATTTTGCTACT+TGG | - | chr2_4:13194396-13194415 | Msa0316270:intron | 30.0% |
| !! | ATTGTATTTTGCTACTTGGT+GGG | - | chr2_4:13194400-13194419 | Msa0316270:intron | 30.0% |
| TCTCATGATGTTAATCTCAT+GGG | - | chr2_4:13194517-13194536 | Msa0316270:intron | 30.0% | |
| ! | AATGTGGTGATTTTTCTTAC+AGG | + | chr2_4:13194599-13194618 | None:intergenic | 30.0% |
| CATAAGACATATTTAGTGTC+TGG | - | chr2_4:13194659-13194678 | Msa0316270:intron | 30.0% | |
| TTGAATGTAACTACATGCAT+CGG | + | chr2_4:13194704-13194723 | None:intergenic | 30.0% | |
| GAAATTACATTTGTCAGTGT+CGG | + | chr2_4:13194830-13194849 | None:intergenic | 30.0% | |
| AGAATTGAAAATTGAGACCT+TGG | + | chr2_4:13194164-13194183 | None:intergenic | 30.0% | |
| ! | TGTTCAACATTTTCATTGGT+TGG | + | chr2_4:13194188-13194207 | None:intergenic | 30.0% |
| TCATTAAATGAAAGGTAGAG+AGG | + | chr2_4:13194245-13194264 | None:intergenic | 30.0% | |
| ! | TCTGTCACATTCTTTCTTTT+GGG | + | chr2_4:13194290-13194309 | None:intergenic | 30.0% |
| ! | TTCTGTCACATTCTTTCTTT+TGG | + | chr2_4:13194291-13194310 | None:intergenic | 30.0% |
| ! | TTGGATTGTATTTTGCTACT+TGG | - | chr2_4:13194396-13194415 | Msa0316270:intron | 30.0% |
| !! | ATTGTATTTTGCTACTTGGT+GGG | - | chr2_4:13194400-13194419 | Msa0316270:intron | 30.0% |
| TCTCATGATGTTAATCTCAT+GGG | - | chr2_4:13194517-13194536 | Msa0316270:intron | 30.0% | |
| ! | AATGTGGTGATTTTTCTTAC+AGG | + | chr2_4:13194599-13194618 | None:intergenic | 30.0% |
| CATAAGACATATTTAGTGTC+TGG | - | chr2_4:13194659-13194678 | Msa0316270:intron | 30.0% | |
| TTGAATGTAACTACATGCAT+CGG | + | chr2_4:13194704-13194723 | None:intergenic | 30.0% | |
| GAAATTACATTTGTCAGTGT+CGG | + | chr2_4:13194830-13194849 | None:intergenic | 30.0% | |
| AGCTCAATGTTAATCTCTAG+TGG | + | chr2_4:13194344-13194363 | None:intergenic | 35.0% | |
| !!! | TTTTGAGCTGCTTTTTCACT+TGG | + | chr2_4:13194368-13194387 | None:intergenic | 35.0% |
| !! | GATTGTATTTTGCTACTTGG+TGG | - | chr2_4:13194399-13194418 | Msa0316270:intron | 35.0% |
| ATAAAGTGCAAGTAAGCCAA+GGG | + | chr2_4:13194481-13194500 | None:intergenic | 35.0% | |
| CTCTCATGATGTTAATCTCA+TGG | - | chr2_4:13194516-13194535 | Msa0316270:intron | 35.0% | |
| AATTTCAAAATTGGGTACGC+AGG | - | chr2_4:13194985-13195004 | Msa0316270:CDS | 35.0% | |
| CTAGTATCAAGATTCATGCT+TGG | - | chr2_4:13195115-13195134 | Msa0316270:CDS | 35.0% | |
| CAATTATTGGCAACAATGAG+AGG | + | chr2_4:13195165-13195184 | None:intergenic | 35.0% | |
| CTCTCATTGTTGCCAATAAT+TGG | - | chr2_4:13195163-13195182 | Msa0316270:CDS | 35.0% | |
| TCATTGTTGCCAATAATTGG+TGG | - | chr2_4:13195166-13195185 | Msa0316270:CDS | 35.0% | |
| AGCTCAATGTTAATCTCTAG+TGG | + | chr2_4:13194344-13194363 | None:intergenic | 35.0% | |
| !!! | TTTTGAGCTGCTTTTTCACT+TGG | + | chr2_4:13194368-13194387 | None:intergenic | 35.0% |
| !! | GATTGTATTTTGCTACTTGG+TGG | - | chr2_4:13194399-13194418 | Msa0316270:intron | 35.0% |
| ATAAAGTGCAAGTAAGCCAA+GGG | + | chr2_4:13194481-13194500 | None:intergenic | 35.0% | |
| CTCTCATGATGTTAATCTCA+TGG | - | chr2_4:13194516-13194535 | Msa0316270:intron | 35.0% | |
| AATTTCAAAATTGGGTACGC+AGG | - | chr2_4:13194985-13195004 | Msa0316270:CDS | 35.0% | |
| CTAGTATCAAGATTCATGCT+TGG | - | chr2_4:13195115-13195134 | Msa0316270:CDS | 35.0% | |
| CAATTATTGGCAACAATGAG+AGG | + | chr2_4:13195165-13195184 | None:intergenic | 35.0% | |
| CTCTCATTGTTGCCAATAAT+TGG | - | chr2_4:13195163-13195182 | Msa0316270:CDS | 35.0% | |
| TCATTGTTGCCAATAATTGG+TGG | - | chr2_4:13195166-13195185 | Msa0316270:CDS | 35.0% | |
| CAAGTACATCATCACTTCCA+AGG | - | chr2_4:13194144-13194163 | Msa0316270:CDS | 40.0% | |
| TGAAAGGTAGAGAGGTTTCT+TGG | + | chr2_4:13194237-13194256 | None:intergenic | 40.0% | |
| GATAAAGTGCAAGTAAGCCA+AGG | + | chr2_4:13194482-13194501 | None:intergenic | 40.0% | |
| ! | TGTTAATCTCATGGGCTACT+AGG | - | chr2_4:13194525-13194544 | Msa0316270:intron | 40.0% |
| ! | GTTAATCTCATGGGCTACTA+GGG | - | chr2_4:13194526-13194545 | Msa0316270:intron | 40.0% |
| ! | GTTTTCACTTTCACTAGCTC+TGG | - | chr2_4:13194636-13194655 | Msa0316270:intron | 40.0% |
| GTACTGTTGAAAAGTGGCAT+CGG | + | chr2_4:13194776-13194795 | None:intergenic | 40.0% | |
| GTGTCAGTACTGTTGAAAAG+TGG | + | chr2_4:13194782-13194801 | None:intergenic | 40.0% | |
| !! | TTCAACAGTACTGACACTTC+AGG | - | chr2_4:13194785-13194804 | Msa0316270:CDS | 40.0% |
| CTATGTGTCAGTATAGTGTC+TGG | - | chr2_4:13194886-13194905 | Msa0316270:CDS | 40.0% | |
| !!! | TAGTGTCTGGTTTTTGTGTC+TGG | - | chr2_4:13194899-13194918 | Msa0316270:CDS | 40.0% |
| CTATGTGTGAGTGTAATGTC+AGG | - | chr2_4:13194932-13194951 | Msa0316270:CDS | 40.0% | |
| TGTGAGTGTAATGTCAGGTT+CGG | - | chr2_4:13194937-13194956 | Msa0316270:CDS | 40.0% | |
| TTCACTCACATCATCAAGAG+TGG | - | chr2_4:13195073-13195092 | Msa0316270:CDS | 40.0% | |
| ATGAGAGGTAAACTGGCATA+GGG | + | chr2_4:13195150-13195169 | None:intergenic | 40.0% | |
| AATGAGAGGTAAACTGGCAT+AGG | + | chr2_4:13195151-13195170 | None:intergenic | 40.0% | |
| AGTGCACAACCACCAATTAT+TGG | + | chr2_4:13195178-13195197 | None:intergenic | 40.0% | |
| CAAGTACATCATCACTTCCA+AGG | - | chr2_4:13194144-13194163 | Msa0316270:CDS | 40.0% | |
| TGAAAGGTAGAGAGGTTTCT+TGG | + | chr2_4:13194237-13194256 | None:intergenic | 40.0% | |
| GATAAAGTGCAAGTAAGCCA+AGG | + | chr2_4:13194482-13194501 | None:intergenic | 40.0% | |
| ! | TGTTAATCTCATGGGCTACT+AGG | - | chr2_4:13194525-13194544 | Msa0316270:intron | 40.0% |
| ! | GTTAATCTCATGGGCTACTA+GGG | - | chr2_4:13194526-13194545 | Msa0316270:intron | 40.0% |
| ! | GTTTTCACTTTCACTAGCTC+TGG | - | chr2_4:13194636-13194655 | Msa0316270:intron | 40.0% |
| GTACTGTTGAAAAGTGGCAT+CGG | + | chr2_4:13194776-13194795 | None:intergenic | 40.0% | |
| GTGTCAGTACTGTTGAAAAG+TGG | + | chr2_4:13194782-13194801 | None:intergenic | 40.0% | |
| !! | TTCAACAGTACTGACACTTC+AGG | - | chr2_4:13194785-13194804 | Msa0316270:CDS | 40.0% |
| CTATGTGTCAGTATAGTGTC+TGG | - | chr2_4:13194886-13194905 | Msa0316270:CDS | 40.0% | |
| !!! | TAGTGTCTGGTTTTTGTGTC+TGG | - | chr2_4:13194899-13194918 | Msa0316270:CDS | 40.0% |
| CTATGTGTGAGTGTAATGTC+AGG | - | chr2_4:13194932-13194951 | Msa0316270:CDS | 40.0% | |
| TGTGAGTGTAATGTCAGGTT+CGG | - | chr2_4:13194937-13194956 | Msa0316270:CDS | 40.0% | |
| TTCACTCACATCATCAAGAG+TGG | - | chr2_4:13195073-13195092 | Msa0316270:CDS | 40.0% | |
| ATGAGAGGTAAACTGGCATA+GGG | + | chr2_4:13195150-13195169 | None:intergenic | 40.0% | |
| AATGAGAGGTAAACTGGCAT+AGG | + | chr2_4:13195151-13195170 | None:intergenic | 40.0% | |
| AGTGCACAACCACCAATTAT+TGG | + | chr2_4:13195178-13195197 | None:intergenic | 40.0% | |
| GACAGAATGTCAAGCCTATG+AGG | - | chr2_4:13194304-13194323 | Msa0316270:CDS | 45.0% | |
| CCTTGATCTATCAGCCTCAT+AGG | + | chr2_4:13194321-13194340 | None:intergenic | 45.0% | |
| CCTATGAGGCTGATAGATCA+AGG | - | chr2_4:13194318-13194337 | Msa0316270:CDS | 45.0% | |
| GCAGCTCAAAAGCTCAAGAT+TGG | - | chr2_4:13194377-13194396 | Msa0316270:intron | 45.0% | |
| TGAATGCCTTTCCTTACCCT+TGG | - | chr2_4:13194462-13194481 | Msa0316270:intron | 45.0% | |
| AGTAAGCCAAGGGTAAGGAA+AGG | + | chr2_4:13194471-13194490 | None:intergenic | 45.0% | |
| TGCACTTTATCCTTAGCTGC+TGG | - | chr2_4:13194491-13194510 | Msa0316270:intron | 45.0% | |
| ! | TGAGGCCCCAAAAGTTGATT+TGG | - | chr2_4:13194553-13194572 | Msa0316270:intron | 45.0% |
| GTGAGTGTAATGTCAGGTTC+GGG | - | chr2_4:13194938-13194957 | Msa0316270:CDS | 45.0% | |
| TGAGTGTAATGTCAGGTTCG+GGG | - | chr2_4:13194939-13194958 | Msa0316270:CDS | 45.0% | |
| TAGCTGTGGCACACACAATT+GGG | - | chr2_4:13195008-13195027 | Msa0316270:CDS | 45.0% | |
| GATACTAGCACACTGAAAGC+TGG | + | chr2_4:13195103-13195122 | None:intergenic | 45.0% | |
| GGCAACAATGAGAGGTAAAC+TGG | + | chr2_4:13195157-13195176 | None:intergenic | 45.0% | |
| GACAGAATGTCAAGCCTATG+AGG | - | chr2_4:13194304-13194323 | Msa0316270:CDS | 45.0% | |
| CCTTGATCTATCAGCCTCAT+AGG | + | chr2_4:13194321-13194340 | None:intergenic | 45.0% | |
| CCTATGAGGCTGATAGATCA+AGG | - | chr2_4:13194318-13194337 | Msa0316270:CDS | 45.0% | |
| GCAGCTCAAAAGCTCAAGAT+TGG | - | chr2_4:13194377-13194396 | Msa0316270:intron | 45.0% | |
| TGAATGCCTTTCCTTACCCT+TGG | - | chr2_4:13194462-13194481 | Msa0316270:intron | 45.0% | |
| AGTAAGCCAAGGGTAAGGAA+AGG | + | chr2_4:13194471-13194490 | None:intergenic | 45.0% | |
| TGCACTTTATCCTTAGCTGC+TGG | - | chr2_4:13194491-13194510 | Msa0316270:intron | 45.0% | |
| ! | TGAGGCCCCAAAAGTTGATT+TGG | - | chr2_4:13194553-13194572 | Msa0316270:intron | 45.0% |
| GTGAGTGTAATGTCAGGTTC+GGG | - | chr2_4:13194938-13194957 | Msa0316270:CDS | 45.0% | |
| TGAGTGTAATGTCAGGTTCG+GGG | - | chr2_4:13194939-13194958 | Msa0316270:CDS | 45.0% | |
| TAGCTGTGGCACACACAATT+GGG | - | chr2_4:13195008-13195027 | Msa0316270:CDS | 45.0% | |
| GATACTAGCACACTGAAAGC+TGG | + | chr2_4:13195103-13195122 | None:intergenic | 45.0% | |
| GGCAACAATGAGAGGTAAAC+TGG | + | chr2_4:13195157-13195176 | None:intergenic | 45.0% | |
| GTGCAAGTAAGCCAAGGGTA+AGG | + | chr2_4:13194476-13194495 | None:intergenic | 50.0% | |
| CATGAGAGAACCAGCAGCTA+AGG | + | chr2_4:13194504-13194523 | None:intergenic | 50.0% | |
| GTAGCTGTGGCACACACAAT+TGG | - | chr2_4:13195007-13195026 | Msa0316270:CDS | 50.0% | |
| GTGCAAGTAAGCCAAGGGTA+AGG | + | chr2_4:13194476-13194495 | None:intergenic | 50.0% | |
| CATGAGAGAACCAGCAGCTA+AGG | + | chr2_4:13194504-13194523 | None:intergenic | 50.0% | |
| GTAGCTGTGGCACACACAAT+TGG | - | chr2_4:13195007-13195026 | Msa0316270:CDS | 50.0% | |
| ! | ATGGGCTACTAGGGTTGCTG+AGG | - | chr2_4:13194535-13194554 | Msa0316270:intron | 55.0% |
| ATTGGGTACGCAGGTAGCTG+TGG | - | chr2_4:13194994-13195013 | Msa0316270:CDS | 55.0% | |
| ! | ATGGGCTACTAGGGTTGCTG+AGG | - | chr2_4:13194535-13194554 | Msa0316270:intron | 55.0% |
| ATTGGGTACGCAGGTAGCTG+TGG | - | chr2_4:13194994-13195013 | Msa0316270:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 13194122 | 13195231 | 13194122 | ID=Msa0316270;Name=Msa0316270 |
| chr2_4 | mRNA | 13194122 | 13195231 | 13194122 | ID=Msa0316270-mRNA-1;Parent=Msa0316270;Name=Msa0316270-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|0.5|0.33|3|0|230 |
| chr2_4 | exon | 13194985 | 13195231 | 13194985 | ID=Msa0316270-mRNA-1:exon:5030;Parent=Msa0316270-mRNA-1 |
| chr2_4 | exon | 13194755 | 13194972 | 13194755 | ID=Msa0316270-mRNA-1:exon:5029;Parent=Msa0316270-mRNA-1 |
| chr2_4 | exon | 13194122 | 13194346 | 13194122 | ID=Msa0316270-mRNA-1:exon:5028;Parent=Msa0316270-mRNA-1 |
| chr2_4 | CDS | 13194985 | 13195231 | 13194985 | ID=Msa0316270-mRNA-1:cds;Parent=Msa0316270-mRNA-1 |
| chr2_4 | CDS | 13194755 | 13194972 | 13194755 | ID=Msa0316270-mRNA-1:cds;Parent=Msa0316270-mRNA-1 |
| chr2_4 | CDS | 13194122 | 13194346 | 13194122 | ID=Msa0316270-mRNA-1:cds;Parent=Msa0316270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
