Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689650 | XP_003609979.1 | 93.171 | 205 | 10 | 2 | 1 | 204 | 1 | 202 | 3.19e-125 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689650 | sp|Q9LMA8|TI10A_ARATH | 36.328 | 256 | 106 | 10 | 1 | 203 | 1 | 252 | 1.12e-34 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689650 | G7JS78 | 93.171 | 205 | 10 | 2 | 1 | 204 | 1 | 202 | 1.52e-125 | 362 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0689650 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0689650 | Msa1303870 | 0.918202 | 2.083799e-86 | -8.615850e-47 |
| Msa0689650 | Msa1363020 | 0.846034 | 2.798783e-59 | -8.615850e-47 |
| Msa0689650 | Msa1416010 | 0.943145 | 2.037200e-102 | -8.615850e-47 |
| Msa0203400 | Msa0689650 | 0.808081 | 3.689346e-50 | -8.615850e-47 |
| Msa0246540 | Msa0689650 | 0.839671 | 1.378171e-57 | -8.615850e-47 |
| Msa0323880 | Msa0689650 | 0.816429 | 5.555378e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689650 | MtrunA17_Chr4g0070271 | 93.171 | 205 | 10 | 2 | 1 | 204 | 1 | 202 | 2.94e-129 | 362 |
| Msa0689650 | MtrunA17_Chr2g0301131 | 44.828 | 261 | 76 | 11 | 1 | 204 | 1 | 250 | 1.53e-49 | 161 |
| Msa0689650 | MtrunA17_Chr4g0070241 | 79.688 | 64 | 13 | 0 | 70 | 133 | 1 | 64 | 2.88e-29 | 104 |
| Msa0689650 | MtrunA17_Chr5g0399881 | 36.478 | 159 | 71 | 5 | 76 | 204 | 5 | 163 | 1.83e-21 | 87.0 |
| Msa0689650 | MtrunA17_Chr5g0399861 | 32.515 | 163 | 71 | 4 | 76 | 204 | 5 | 162 | 4.07e-21 | 85.9 |
| Msa0689650 | MtrunA17_Chr5g0399851 | 36.364 | 132 | 60 | 2 | 94 | 201 | 11 | 142 | 2.98e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689650 | AT1G19180.1 | 36.328 | 256 | 106 | 10 | 1 | 203 | 1 | 252 | 1.14e-35 | 126 |
| Msa0689650 | AT1G19180.3 | 36.328 | 256 | 106 | 10 | 1 | 203 | 1 | 252 | 1.14e-35 | 126 |
| Msa0689650 | AT1G74950.1 | 35.745 | 235 | 84 | 10 | 7 | 180 | 1 | 229 | 2.15e-27 | 104 |
| Msa0689650 | AT1G74950.2 | 35.683 | 227 | 79 | 10 | 7 | 172 | 1 | 221 | 5.94e-24 | 95.1 |
| Msa0689650 | AT1G19180.2 | 39.098 | 133 | 52 | 5 | 99 | 203 | 55 | 186 | 1.19e-18 | 80.1 |
| Msa0689650 | AT1G17380.1 | 29.353 | 201 | 108 | 5 | 13 | 180 | 7 | 206 | 6.92e-14 | 68.9 |
Find 49 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGACTTCATCGGACATTTC+TGG | 0.184990 | 4_4:-56817275 | Msa0689650:CDS |
| ATTGTCAATTGTGCAGTTTC+TGG | 0.207124 | 4_4:+56816652 | None:intergenic |
| CCTTCTTCTCCTTGAGGTAT+TGG | 0.218986 | 4_4:+56817183 | None:intergenic |
| GGTTGTTGAGGGATCATATT+AGG | 0.246891 | 4_4:+56816529 | None:intergenic |
| CAACAACCTCCCTCACTAAT+TGG | 0.267401 | 4_4:-56816514 | Msa0689650:intron |
| TAGATCTATCATACAGTCTT+AGG | 0.298138 | 4_4:+56815723 | None:intergenic |
| AGCTTCACTTCGTCGATTCA+TGG | 0.304214 | 4_4:-56816333 | Msa0689650:CDS |
| TCAGGAAAGGTTCTTTGATA+TGG | 0.341074 | 4_4:+56815916 | None:intergenic |
| TTTATTTACCATTTGTTTCA+GGG | 0.363709 | 4_4:+56817123 | None:intergenic |
| CGACTTTATCAGTTTGTTGC+CGG | 0.376712 | 4_4:+56817247 | None:intergenic |
| AGCTCCTCAACTTTCTCAGC+AGG | 0.410410 | 4_4:+56816592 | None:intergenic |
| TCCGCTCCATGGCTTGTGTT+AGG | 0.414480 | 4_4:-56815868 | Msa0689650:CDS |
| TTACAGAGTTATTAATCCTA+TGG | 0.427315 | 4_4:-56816683 | Msa0689650:intron |
| TCATGGAGAAGAGGAAAGAT+AGG | 0.451183 | 4_4:-56816316 | Msa0689650:intron |
| GTTTCTGGCTCTTTAACCAT+AGG | 0.475200 | 4_4:+56816667 | None:intergenic |
| CCAATACCTCAAGGAGAAGA+AGG | 0.480824 | 4_4:-56817183 | Msa0689650:CDS |
| CAATCTACAGGGTCATCACC+TGG | 0.484929 | 4_4:-56816903 | Msa0689650:intron |
| TTAGTGAGGGAGGTTGTTGA+GGG | 0.495882 | 4_4:+56816518 | None:intergenic |
| TTATTTACCATTTGTTTCAG+GGG | 0.508177 | 4_4:+56817124 | None:intergenic |
| ACGAACAGAAAGTGGGTTGA+AGG | 0.513252 | 4_4:+56817311 | None:intergenic |
| GATACCAATGTCGACTTCAT+CGG | 0.515126 | 4_4:-56817285 | Msa0689650:exon |
| ATTAGTGAGGGAGGTTGTTG+AGG | 0.517348 | 4_4:+56816517 | None:intergenic |
| GCATGCACCCCTGAAACAAA+TGG | 0.517892 | 4_4:-56817131 | Msa0689650:intron |
| TAATGGACAAGTTATTGTGT+TGG | 0.534161 | 4_4:-56816623 | Msa0689650:CDS |
| GAGAAGAAGGGTAGTTTCGA+AGG | 0.535740 | 4_4:-56817170 | Msa0689650:CDS |
| CAGGGGTGCATGCGTTGTGA+AGG | 0.536647 | 4_4:+56817141 | None:intergenic |
| CCTGGTTCATCTTCTCACTC+TGG | 0.547944 | 4_4:-56816885 | Msa0689650:CDS |
| CCAGAGTGAGAAGATGAACC+AGG | 0.548191 | 4_4:+56816885 | None:intergenic |
| AGCATGCTGACTCCGCTCCA+TGG | 0.562298 | 4_4:-56815879 | Msa0689650:CDS |
| TAACTTAGTTCTATTAGCTG+AGG | 0.565990 | 4_4:-56815702 | Msa0689650:three_prime_UTR |
| GTATCTACACGAACAGAAAG+TGG | 0.569348 | 4_4:+56817303 | None:intergenic |
| TGCATGCGTTGTGAAGGTTA+AGG | 0.575616 | 4_4:+56817147 | None:intergenic |
| AAATCAATTACCAATTAGTG+AGG | 0.584879 | 4_4:+56816504 | None:intergenic |
| GGTTCTTTGATATGGTGAGT+AGG | 0.584950 | 4_4:+56815924 | None:intergenic |
| TTCTGGAGCAGAGTCAGGAA+AGG | 0.587295 | 4_4:+56815903 | None:intergenic |
| GTTTGTGGGAAATAAATCCA+TGG | 0.589977 | 4_4:+56816857 | None:intergenic |
| TTAGCACCTAACACAAGCCA+TGG | 0.596993 | 4_4:+56815862 | None:intergenic |
| AACTACCCTTCTTCTCCTTG+AGG | 0.603992 | 4_4:+56817177 | None:intergenic |
| TTCTCACTCTGGAATAACCA+TGG | 0.605298 | 4_4:-56816874 | Msa0689650:CDS |
| CAATTACCAATTAGTGAGGG+AGG | 0.610131 | 4_4:+56816508 | None:intergenic |
| CAATACCTCAAGGAGAAGAA+GGG | 0.616382 | 4_4:-56817182 | Msa0689650:CDS |
| TTCGTCGATTCATGGAGAAG+AGG | 0.618289 | 4_4:-56816325 | Msa0689650:CDS |
| ACCTAACACAAGCCATGGAG+CGG | 0.623220 | 4_4:+56815867 | None:intergenic |
| TCTATTGAGCCAATACCTCA+AGG | 0.624878 | 4_4:-56817192 | Msa0689650:CDS |
| AATCAATTACCAATTAGTGA+GGG | 0.634671 | 4_4:+56816505 | None:intergenic |
| ATGTCCGATGAAGTCGACAT+TGG | 0.636880 | 4_4:+56817281 | None:intergenic |
| TTACAAGTTTGAGAAAACGT+AGG | 0.650898 | 4_4:+56817215 | None:intergenic |
| CAACAAACTGATAAAGTCGT+CGG | 0.655555 | 4_4:-56817243 | Msa0689650:CDS |
| TATCTACACGAACAGAAAGT+GGG | 0.660823 | 4_4:+56817304 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTAATTTAACTGA+TGG | - | chr4_4:56816622-56816641 | Msa0689650:CDS | 10.0% |
| !!! | TTTATTTTTAATTTAACTGA+TGG | - | chr4_4:56816622-56816641 | Msa0689650:CDS | 10.0% |
| !!! | ATGTCTATTAAATCTTTTTT+CGG | - | chr4_4:56816801-56816820 | Msa0689650:intron | 15.0% |
| !!! | ATGTCTATTAAATCTTTTTT+CGG | - | chr4_4:56816801-56816820 | Msa0689650:intron | 15.0% |
| !! | TTTATTTACCATTTGTTTCA+GGG | + | chr4_4:56815897-56815916 | None:intergenic | 20.0% |
| !!! | TTTTATTTACCATTTGTTTC+AGG | + | chr4_4:56815898-56815917 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTCAATCTAC+AGG | - | chr4_4:56816102-56816121 | Msa0689650:intron | 20.0% |
| !!! | TTTTCTTTTTTCAATCTACA+GGG | - | chr4_4:56816103-56816122 | Msa0689650:intron | 20.0% |
| !!! | CAATTGACAATGTTTTATAA+TGG | - | chr4_4:56816377-56816396 | Msa0689650:intron | 20.0% |
| !! | GAATGACAAAAATTAATTAC+AGG | + | chr4_4:56817365-56817384 | None:intergenic | 20.0% |
| !! | TTTATTTACCATTTGTTTCA+GGG | + | chr4_4:56815897-56815916 | None:intergenic | 20.0% |
| !!! | TTTTATTTACCATTTGTTTC+AGG | + | chr4_4:56815898-56815917 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTCAATCTAC+AGG | - | chr4_4:56816102-56816121 | Msa0689650:intron | 20.0% |
| !!! | TTTTCTTTTTTCAATCTACA+GGG | - | chr4_4:56816103-56816122 | Msa0689650:intron | 20.0% |
| !!! | CAATTGACAATGTTTTATAA+TGG | - | chr4_4:56816377-56816396 | Msa0689650:intron | 20.0% |
| !! | GAATGACAAAAATTAATTAC+AGG | + | chr4_4:56817365-56817384 | None:intergenic | 20.0% |
| ! | TTATTTACCATTTGTTTCAG+GGG | + | chr4_4:56815896-56815915 | None:intergenic | 25.0% |
| !! | AATTCAGTTCCTATAGTTTT+GGG | - | chr4_4:56815934-56815953 | Msa0689650:CDS | 25.0% |
| ! | TAGTCTTTGTTAAATGAACT+TGG | - | chr4_4:56815989-56816008 | Msa0689650:intron | 25.0% |
| ! | AAATGAACTTGGTCAAAAAA+TGG | - | chr4_4:56816000-56816019 | Msa0689650:intron | 25.0% |
| !!! | TTCCCTTATTTTTCTCTATT+CGG | - | chr4_4:56816054-56816073 | Msa0689650:intron | 25.0% |
| ! | AACCGAATAGAGAAAAATAA+GGG | + | chr4_4:56816059-56816078 | None:intergenic | 25.0% |
| ! | TAACCGAATAGAGAAAAATA+AGG | + | chr4_4:56816060-56816079 | None:intergenic | 25.0% |
| ! | AGAAAAAATCCATAGTTGTA+AGG | + | chr4_4:56816200-56816219 | None:intergenic | 25.0% |
| ! | TTACAGAGTTATTAATCCTA+TGG | - | chr4_4:56816334-56816353 | Msa0689650:CDS | 25.0% |
| ! | AATCAATTACCAATTAGTGA+GGG | + | chr4_4:56816515-56816534 | None:intergenic | 25.0% |
| ! | AAATCAATTACCAATTAGTG+AGG | + | chr4_4:56816516-56816535 | None:intergenic | 25.0% |
| !! | TTGTGATTTGAAACAAATAC+AGG | - | chr4_4:56816561-56816580 | Msa0689650:CDS | 25.0% |
| !! | CAAATACAGGAAATTGTTTT+TGG | - | chr4_4:56816574-56816593 | Msa0689650:CDS | 25.0% |
| !!! | ATTTAATTTGTTTGAGAGAG+AGG | + | chr4_4:56816731-56816750 | None:intergenic | 25.0% |
| !!! | CTATTAAATCTTTTTTCGGT+TGG | - | chr4_4:56816805-56816824 | Msa0689650:intron | 25.0% |
| ! | AATCCAAAATCCAAATTAGT+TGG | + | chr4_4:56816833-56816852 | None:intergenic | 25.0% |
| !!! | TTGAACATTTTTTGAGCTTT+TGG | - | chr4_4:56816851-56816870 | Msa0689650:CDS | 25.0% |
| ! | CTTGATAAGTAAATAACAAG+AGG | + | chr4_4:56816997-56817016 | None:intergenic | 25.0% |
| ! | TTATTTACCATTTGTTTCAG+GGG | + | chr4_4:56815896-56815915 | None:intergenic | 25.0% |
| !! | AATTCAGTTCCTATAGTTTT+GGG | - | chr4_4:56815934-56815953 | Msa0689650:CDS | 25.0% |
| ! | TAGTCTTTGTTAAATGAACT+TGG | - | chr4_4:56815989-56816008 | Msa0689650:intron | 25.0% |
| ! | AAATGAACTTGGTCAAAAAA+TGG | - | chr4_4:56816000-56816019 | Msa0689650:intron | 25.0% |
| !!! | TTCCCTTATTTTTCTCTATT+CGG | - | chr4_4:56816054-56816073 | Msa0689650:intron | 25.0% |
| ! | AACCGAATAGAGAAAAATAA+GGG | + | chr4_4:56816059-56816078 | None:intergenic | 25.0% |
| ! | TAACCGAATAGAGAAAAATA+AGG | + | chr4_4:56816060-56816079 | None:intergenic | 25.0% |
| ! | AGAAAAAATCCATAGTTGTA+AGG | + | chr4_4:56816200-56816219 | None:intergenic | 25.0% |
| ! | TTACAGAGTTATTAATCCTA+TGG | - | chr4_4:56816334-56816353 | Msa0689650:CDS | 25.0% |
| ! | AATCAATTACCAATTAGTGA+GGG | + | chr4_4:56816515-56816534 | None:intergenic | 25.0% |
| ! | AAATCAATTACCAATTAGTG+AGG | + | chr4_4:56816516-56816535 | None:intergenic | 25.0% |
| !! | TTGTGATTTGAAACAAATAC+AGG | - | chr4_4:56816561-56816580 | Msa0689650:CDS | 25.0% |
| !! | CAAATACAGGAAATTGTTTT+TGG | - | chr4_4:56816574-56816593 | Msa0689650:CDS | 25.0% |
| !!! | ATTTAATTTGTTTGAGAGAG+AGG | + | chr4_4:56816731-56816750 | None:intergenic | 25.0% |
| !!! | CTATTAAATCTTTTTTCGGT+TGG | - | chr4_4:56816805-56816824 | Msa0689650:intron | 25.0% |
| ! | AATCCAAAATCCAAATTAGT+TGG | + | chr4_4:56816833-56816852 | None:intergenic | 25.0% |
| !!! | TTGAACATTTTTTGAGCTTT+TGG | - | chr4_4:56816851-56816870 | Msa0689650:CDS | 25.0% |
| ! | CTTGATAAGTAAATAACAAG+AGG | + | chr4_4:56816997-56817016 | None:intergenic | 25.0% |
| TTACAAGTTTGAGAAAACGT+AGG | + | chr4_4:56815805-56815824 | None:intergenic | 30.0% | |
| ! | CAATTCAGTTCCTATAGTTT+TGG | - | chr4_4:56815933-56815952 | Msa0689650:CDS | 30.0% |
| !! | ATTCTAAAGCCCAAAACTAT+AGG | + | chr4_4:56815946-56815965 | None:intergenic | 30.0% |
| TTTCTCTATTCGGTTACAAT+TGG | - | chr4_4:56816064-56816083 | Msa0689650:intron | 30.0% | |
| TTCTCTATTCGGTTACAATT+GGG | - | chr4_4:56816065-56816084 | Msa0689650:intron | 30.0% | |
| ! | TCCATAGTTGTAAGGTTTTT+CGG | + | chr4_4:56816192-56816211 | None:intergenic | 30.0% |
| !!! | CTATGGATTTTTTCTTTCCA+AGG | - | chr4_4:56816205-56816224 | Msa0689650:intron | 30.0% |
| AATTGCAATGACTCAAACAA+TGG | + | chr4_4:56816282-56816301 | None:intergenic | 30.0% | |
| ! | TAATGGACAAGTTATTGTGT+TGG | - | chr4_4:56816394-56816413 | Msa0689650:intron | 30.0% |
| !!! | AGGAAATTGTTTTTGGTATC+AGG | - | chr4_4:56816581-56816600 | Msa0689650:CDS | 30.0% |
| !!! | GGAAATTGTTTTTGGTATCA+GGG | - | chr4_4:56816582-56816601 | Msa0689650:CDS | 30.0% |
| ! | GTACCAACTAATTTGGATTT+TGG | - | chr4_4:56816827-56816846 | Msa0689650:CDS | 30.0% |
| TAGATCTATCATACAGTCTT+AGG | + | chr4_4:56817297-56817316 | None:intergenic | 30.0% | |
| !! | TAACTTAGTTCTATTAGCTG+AGG | - | chr4_4:56817315-56817334 | Msa0689650:five_prime_UTR | 30.0% |
| TTACAAGTTTGAGAAAACGT+AGG | + | chr4_4:56815805-56815824 | None:intergenic | 30.0% | |
| ! | CAATTCAGTTCCTATAGTTT+TGG | - | chr4_4:56815933-56815952 | Msa0689650:CDS | 30.0% |
| !! | ATTCTAAAGCCCAAAACTAT+AGG | + | chr4_4:56815946-56815965 | None:intergenic | 30.0% |
| TTTCTCTATTCGGTTACAAT+TGG | - | chr4_4:56816064-56816083 | Msa0689650:intron | 30.0% | |
| TTCTCTATTCGGTTACAATT+GGG | - | chr4_4:56816065-56816084 | Msa0689650:intron | 30.0% | |
| ! | TCCATAGTTGTAAGGTTTTT+CGG | + | chr4_4:56816192-56816211 | None:intergenic | 30.0% |
| !!! | CTATGGATTTTTTCTTTCCA+AGG | - | chr4_4:56816205-56816224 | Msa0689650:intron | 30.0% |
| AATTGCAATGACTCAAACAA+TGG | + | chr4_4:56816282-56816301 | None:intergenic | 30.0% | |
| ! | TAATGGACAAGTTATTGTGT+TGG | - | chr4_4:56816394-56816413 | Msa0689650:intron | 30.0% |
| !!! | AGGAAATTGTTTTTGGTATC+AGG | - | chr4_4:56816581-56816600 | Msa0689650:CDS | 30.0% |
| !!! | GGAAATTGTTTTTGGTATCA+GGG | - | chr4_4:56816582-56816601 | Msa0689650:CDS | 30.0% |
| ! | GTACCAACTAATTTGGATTT+TGG | - | chr4_4:56816827-56816846 | Msa0689650:CDS | 30.0% |
| TAGATCTATCATACAGTCTT+AGG | + | chr4_4:56817297-56817316 | None:intergenic | 30.0% | |
| !! | TAACTTAGTTCTATTAGCTG+AGG | - | chr4_4:56817315-56817334 | Msa0689650:five_prime_UTR | 30.0% |
| TATCTACACGAACAGAAAGT+GGG | + | chr4_4:56815716-56815735 | None:intergenic | 35.0% | |
| CAACAAACTGATAAAGTCGT+CGG | - | chr4_4:56815774-56815793 | Msa0689650:three_prime_UTR | 35.0% | |
| GTTTGTGGGAAATAAATCCA+TGG | + | chr4_4:56816163-56816182 | None:intergenic | 35.0% | |
| ACCGAAAAACCTTACAACTA+TGG | - | chr4_4:56816188-56816207 | Msa0689650:intron | 35.0% | |
| ! | AAAAGCACAAAAACTCACCT+TGG | + | chr4_4:56816225-56816244 | None:intergenic | 35.0% |
| ATTGTCAATTGTGCAGTTTC+TGG | + | chr4_4:56816368-56816387 | None:intergenic | 35.0% | |
| !! | AGTGAAGCTTTTCTAGCAAT+TGG | + | chr4_4:56816673-56816692 | None:intergenic | 35.0% |
| ATGCATGCATAGCATAAATC+TGG | - | chr4_4:56816876-56816895 | Msa0689650:CDS | 35.0% | |
| ATTTCCAGTCACACAAAGAA+AGG | + | chr4_4:56816902-56816921 | None:intergenic | 35.0% | |
| TCAGGAAAGGTTCTTTGATA+TGG | + | chr4_4:56817104-56817123 | None:intergenic | 35.0% | |
| TATCTACACGAACAGAAAGT+GGG | + | chr4_4:56815716-56815735 | None:intergenic | 35.0% | |
| CAACAAACTGATAAAGTCGT+CGG | - | chr4_4:56815774-56815793 | Msa0689650:three_prime_UTR | 35.0% | |
| GTTTGTGGGAAATAAATCCA+TGG | + | chr4_4:56816163-56816182 | None:intergenic | 35.0% | |
| ACCGAAAAACCTTACAACTA+TGG | - | chr4_4:56816188-56816207 | Msa0689650:intron | 35.0% | |
| ! | AAAAGCACAAAAACTCACCT+TGG | + | chr4_4:56816225-56816244 | None:intergenic | 35.0% |
| ATTGTCAATTGTGCAGTTTC+TGG | + | chr4_4:56816368-56816387 | None:intergenic | 35.0% | |
| !! | AGTGAAGCTTTTCTAGCAAT+TGG | + | chr4_4:56816673-56816692 | None:intergenic | 35.0% |
| ATGCATGCATAGCATAAATC+TGG | - | chr4_4:56816876-56816895 | Msa0689650:CDS | 35.0% | |
| ATTTCCAGTCACACAAAGAA+AGG | + | chr4_4:56816902-56816921 | None:intergenic | 35.0% | |
| TCAGGAAAGGTTCTTTGATA+TGG | + | chr4_4:56817104-56817123 | None:intergenic | 35.0% | |
| GTATCTACACGAACAGAAAG+TGG | + | chr4_4:56815717-56815736 | None:intergenic | 40.0% | |
| !! | GATACCAATGTCGACTTCAT+CGG | - | chr4_4:56815732-56815751 | Msa0689650:three_prime_UTR | 40.0% |
| !!! | TCGGACATTTCTGGTTTTTC+CGG | - | chr4_4:56815751-56815770 | Msa0689650:three_prime_UTR | 40.0% |
| !! | CGACTTTATCAGTTTGTTGC+CGG | + | chr4_4:56815773-56815792 | None:intergenic | 40.0% |
| TCTATTGAGCCAATACCTCA+AGG | - | chr4_4:56815825-56815844 | Msa0689650:three_prime_UTR | 40.0% | |
| CAATACCTCAAGGAGAAGAA+GGG | - | chr4_4:56815835-56815854 | Msa0689650:exon | 40.0% | |
| !! | TTCTCACTCTGGAATAACCA+TGG | - | chr4_4:56816143-56816162 | Msa0689650:intron | 40.0% |
| !!! | TTTTTCGGTGTCACGTTTGT+GGG | + | chr4_4:56816177-56816196 | None:intergenic | 40.0% |
| !! | GTTTCTGGCTCTTTAACCAT+AGG | + | chr4_4:56816353-56816372 | None:intergenic | 40.0% |
| ! | TTTTCCTGCTGAGAAAGTTG+AGG | - | chr4_4:56816421-56816440 | Msa0689650:intron | 40.0% |
| GGTTGTTGAGGGATCATATT+AGG | + | chr4_4:56816491-56816510 | None:intergenic | 40.0% | |
| CAATTACCAATTAGTGAGGG+AGG | + | chr4_4:56816512-56816531 | None:intergenic | 40.0% | |
| TCATGGAGAAGAGGAAAGAT+AGG | - | chr4_4:56816701-56816720 | Msa0689650:intron | 40.0% | |
| ! | TCGGTTGGTACCAACTAATT+TGG | - | chr4_4:56816820-56816839 | Msa0689650:CDS | 40.0% |
| AGGCAAAGCAATTTGCACAA+TGG | + | chr4_4:56816977-56816996 | None:intergenic | 40.0% | |
| GGTTCTTTGATATGGTGAGT+AGG | + | chr4_4:56817096-56817115 | None:intergenic | 40.0% | |
| GTATCTACACGAACAGAAAG+TGG | + | chr4_4:56815717-56815736 | None:intergenic | 40.0% | |
| !! | GATACCAATGTCGACTTCAT+CGG | - | chr4_4:56815732-56815751 | Msa0689650:three_prime_UTR | 40.0% |
| !!! | TCGGACATTTCTGGTTTTTC+CGG | - | chr4_4:56815751-56815770 | Msa0689650:three_prime_UTR | 40.0% |
| !! | CGACTTTATCAGTTTGTTGC+CGG | + | chr4_4:56815773-56815792 | None:intergenic | 40.0% |
| TCTATTGAGCCAATACCTCA+AGG | - | chr4_4:56815825-56815844 | Msa0689650:three_prime_UTR | 40.0% | |
| CAATACCTCAAGGAGAAGAA+GGG | - | chr4_4:56815835-56815854 | Msa0689650:exon | 40.0% | |
| !! | TTCTCACTCTGGAATAACCA+TGG | - | chr4_4:56816143-56816162 | Msa0689650:intron | 40.0% |
| !!! | TTTTTCGGTGTCACGTTTGT+GGG | + | chr4_4:56816177-56816196 | None:intergenic | 40.0% |
| !! | GTTTCTGGCTCTTTAACCAT+AGG | + | chr4_4:56816353-56816372 | None:intergenic | 40.0% |
| ! | TTTTCCTGCTGAGAAAGTTG+AGG | - | chr4_4:56816421-56816440 | Msa0689650:intron | 40.0% |
| GGTTGTTGAGGGATCATATT+AGG | + | chr4_4:56816491-56816510 | None:intergenic | 40.0% | |
| CAATTACCAATTAGTGAGGG+AGG | + | chr4_4:56816512-56816531 | None:intergenic | 40.0% | |
| TCATGGAGAAGAGGAAAGAT+AGG | - | chr4_4:56816701-56816720 | Msa0689650:intron | 40.0% | |
| ! | TCGGTTGGTACCAACTAATT+TGG | - | chr4_4:56816820-56816839 | Msa0689650:CDS | 40.0% |
| AGGCAAAGCAATTTGCACAA+TGG | + | chr4_4:56816977-56816996 | None:intergenic | 40.0% | |
| GGTTCTTTGATATGGTGAGT+AGG | + | chr4_4:56817096-56817115 | None:intergenic | 40.0% | |
| !! | ACGAACAGAAAGTGGGTTGA+AGG | + | chr4_4:56815709-56815728 | None:intergenic | 45.0% |
| ATGTCCGATGAAGTCGACAT+TGG | + | chr4_4:56815739-56815758 | None:intergenic | 45.0% | |
| TCGACTTCATCGGACATTTC+TGG | - | chr4_4:56815742-56815761 | Msa0689650:three_prime_UTR | 45.0% | |
| CCTTCTTCTCCTTGAGGTAT+TGG | + | chr4_4:56815837-56815856 | None:intergenic | 45.0% | |
| CCAATACCTCAAGGAGAAGA+AGG | - | chr4_4:56815834-56815853 | Msa0689650:exon | 45.0% | |
| AACTACCCTTCTTCTCCTTG+AGG | + | chr4_4:56815843-56815862 | None:intergenic | 45.0% | |
| GAGAAGAAGGGTAGTTTCGA+AGG | - | chr4_4:56815847-56815866 | Msa0689650:exon | 45.0% | |
| TGCATGCGTTGTGAAGGTTA+AGG | + | chr4_4:56815873-56815892 | None:intergenic | 45.0% | |
| !!! | GTTTTTCGGTGTCACGTTTG+TGG | + | chr4_4:56816178-56816197 | None:intergenic | 45.0% |
| TTAGTGAGGGAGGTTGTTGA+GGG | + | chr4_4:56816502-56816521 | None:intergenic | 45.0% | |
| ATTAGTGAGGGAGGTTGTTG+AGG | + | chr4_4:56816503-56816522 | None:intergenic | 45.0% | |
| CAACAACCTCCCTCACTAAT+TGG | - | chr4_4:56816503-56816522 | Msa0689650:intron | 45.0% | |
| !! | AGCTTCACTTCGTCGATTCA+TGG | - | chr4_4:56816684-56816703 | Msa0689650:intron | 45.0% |
| !! | TTCGTCGATTCATGGAGAAG+AGG | - | chr4_4:56816692-56816711 | Msa0689650:intron | 45.0% |
| TTAGCACCTAACACAAGCCA+TGG | + | chr4_4:56817158-56817177 | None:intergenic | 45.0% | |
| !! | ACGAACAGAAAGTGGGTTGA+AGG | + | chr4_4:56815709-56815728 | None:intergenic | 45.0% |
| ATGTCCGATGAAGTCGACAT+TGG | + | chr4_4:56815739-56815758 | None:intergenic | 45.0% | |
| TCGACTTCATCGGACATTTC+TGG | - | chr4_4:56815742-56815761 | Msa0689650:three_prime_UTR | 45.0% | |
| CCTTCTTCTCCTTGAGGTAT+TGG | + | chr4_4:56815837-56815856 | None:intergenic | 45.0% | |
| CCAATACCTCAAGGAGAAGA+AGG | - | chr4_4:56815834-56815853 | Msa0689650:exon | 45.0% | |
| AACTACCCTTCTTCTCCTTG+AGG | + | chr4_4:56815843-56815862 | None:intergenic | 45.0% | |
| GAGAAGAAGGGTAGTTTCGA+AGG | - | chr4_4:56815847-56815866 | Msa0689650:exon | 45.0% | |
| TGCATGCGTTGTGAAGGTTA+AGG | + | chr4_4:56815873-56815892 | None:intergenic | 45.0% | |
| !!! | GTTTTTCGGTGTCACGTTTG+TGG | + | chr4_4:56816178-56816197 | None:intergenic | 45.0% |
| TTAGTGAGGGAGGTTGTTGA+GGG | + | chr4_4:56816502-56816521 | None:intergenic | 45.0% | |
| ATTAGTGAGGGAGGTTGTTG+AGG | + | chr4_4:56816503-56816522 | None:intergenic | 45.0% | |
| CAACAACCTCCCTCACTAAT+TGG | - | chr4_4:56816503-56816522 | Msa0689650:intron | 45.0% | |
| !! | AGCTTCACTTCGTCGATTCA+TGG | - | chr4_4:56816684-56816703 | Msa0689650:intron | 45.0% |
| !! | TTCGTCGATTCATGGAGAAG+AGG | - | chr4_4:56816692-56816711 | Msa0689650:intron | 45.0% |
| TTAGCACCTAACACAAGCCA+TGG | + | chr4_4:56817158-56817177 | None:intergenic | 45.0% | |
| !! | AATAACAATATTATTAAATT+AGG | + | chr4_4:56817045-56817064 | None:intergenic | 5.0% |
| !! | TAAAAATAATAAACAAAAAA+AGG | + | chr4_4:56817234-56817253 | None:intergenic | 5.0% |
| !!! | TTTATTATTTTTATTTTGAT+CGG | - | chr4_4:56817241-56817260 | Msa0689650:CDS | 5.0% |
| !! | AATAACAATATTATTAAATT+AGG | + | chr4_4:56817045-56817064 | None:intergenic | 5.0% |
| !! | TAAAAATAATAAACAAAAAA+AGG | + | chr4_4:56817234-56817253 | None:intergenic | 5.0% |
| !!! | TTTATTATTTTTATTTTGAT+CGG | - | chr4_4:56817241-56817260 | Msa0689650:CDS | 5.0% |
| GCATGCACCCCTGAAACAAA+TGG | - | chr4_4:56815886-56815905 | Msa0689650:CDS | 50.0% | |
| CAATCTACAGGGTCATCACC+TGG | - | chr4_4:56816114-56816133 | Msa0689650:intron | 50.0% | |
| CCAGAGTGAGAAGATGAACC+AGG | + | chr4_4:56816135-56816154 | None:intergenic | 50.0% | |
| CCTGGTTCATCTTCTCACTC+TGG | - | chr4_4:56816132-56816151 | Msa0689650:intron | 50.0% | |
| AGCTCCTCAACTTTCTCAGC+AGG | + | chr4_4:56816428-56816447 | None:intergenic | 50.0% | |
| ! | CTGGCCTTTCTTTGTGTGAC+TGG | - | chr4_4:56816895-56816914 | Msa0689650:CDS | 50.0% |
| !! | TTCTGGAGCAGAGTCAGGAA+AGG | + | chr4_4:56817117-56817136 | None:intergenic | 50.0% |
| !!! | TGCTTTTCTGGAGCAGAGTC+AGG | + | chr4_4:56817122-56817141 | None:intergenic | 50.0% |
| ACCTAACACAAGCCATGGAG+CGG | + | chr4_4:56817153-56817172 | None:intergenic | 50.0% | |
| GCATGCACCCCTGAAACAAA+TGG | - | chr4_4:56815886-56815905 | Msa0689650:CDS | 50.0% | |
| CAATCTACAGGGTCATCACC+TGG | - | chr4_4:56816114-56816133 | Msa0689650:intron | 50.0% | |
| CCAGAGTGAGAAGATGAACC+AGG | + | chr4_4:56816135-56816154 | None:intergenic | 50.0% | |
| CCTGGTTCATCTTCTCACTC+TGG | - | chr4_4:56816132-56816151 | Msa0689650:intron | 50.0% | |
| AGCTCCTCAACTTTCTCAGC+AGG | + | chr4_4:56816428-56816447 | None:intergenic | 50.0% | |
| ! | CTGGCCTTTCTTTGTGTGAC+TGG | - | chr4_4:56816895-56816914 | Msa0689650:CDS | 50.0% |
| !! | TTCTGGAGCAGAGTCAGGAA+AGG | + | chr4_4:56817117-56817136 | None:intergenic | 50.0% |
| !!! | TGCTTTTCTGGAGCAGAGTC+AGG | + | chr4_4:56817122-56817141 | None:intergenic | 50.0% |
| ACCTAACACAAGCCATGGAG+CGG | + | chr4_4:56817153-56817172 | None:intergenic | 50.0% | |
| ! | GCGGAGTCAGCATGCTTTTC+TGG | + | chr4_4:56817134-56817153 | None:intergenic | 55.0% |
| ! | TCCGCTCCATGGCTTGTGTT+AGG | - | chr4_4:56817149-56817168 | Msa0689650:CDS | 55.0% |
| ! | GCGGAGTCAGCATGCTTTTC+TGG | + | chr4_4:56817134-56817153 | None:intergenic | 55.0% |
| ! | TCCGCTCCATGGCTTGTGTT+AGG | - | chr4_4:56817149-56817168 | Msa0689650:CDS | 55.0% |
| ! | CAGGGGTGCATGCGTTGTGA+AGG | + | chr4_4:56815879-56815898 | None:intergenic | 60.0% |
| !! | AGCATGCTGACTCCGCTCCA+TGG | - | chr4_4:56817138-56817157 | Msa0689650:CDS | 60.0% |
| ! | CAGGGGTGCATGCGTTGTGA+AGG | + | chr4_4:56815879-56815898 | None:intergenic | 60.0% |
| !! | AGCATGCTGACTCCGCTCCA+TGG | - | chr4_4:56817138-56817157 | Msa0689650:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 56815647 | 56817392 | 56815647 | ID=Msa0689650;Name=Msa0689650 |
| chr4_4 | mRNA | 56815647 | 56817392 | 56815647 | ID=Msa0689650-mRNA-1;Parent=Msa0689650;Name=Msa0689650-mRNA-1;_AED=0.23;_eAED=0.23;_QI=92|1|1|1|1|1|5|205|205 |
| chr4_4 | exon | 56815647 | 56815954 | 56815647 | ID=Msa0689650-mRNA-1:exon:15111;Parent=Msa0689650-mRNA-1 |
| chr4_4 | exon | 56816317 | 56816374 | 56816317 | ID=Msa0689650-mRNA-1:exon:15110;Parent=Msa0689650-mRNA-1 |
| chr4_4 | exon | 56816515 | 56816699 | 56816515 | ID=Msa0689650-mRNA-1:exon:15109;Parent=Msa0689650-mRNA-1 |
| chr4_4 | exon | 56816813 | 56816915 | 56816813 | ID=Msa0689650-mRNA-1:exon:15108;Parent=Msa0689650-mRNA-1 |
| chr4_4 | exon | 56817132 | 56817392 | 56817132 | ID=Msa0689650-mRNA-1:exon:15107;Parent=Msa0689650-mRNA-1 |
| chr4_4 | five_prime_UTR | 56817301 | 56817392 | 56817301 | ID=Msa0689650-mRNA-1:five_prime_utr;Parent=Msa0689650-mRNA-1 |
| chr4_4 | CDS | 56817132 | 56817300 | 56817132 | ID=Msa0689650-mRNA-1:cds;Parent=Msa0689650-mRNA-1 |
| chr4_4 | CDS | 56816813 | 56816915 | 56816813 | ID=Msa0689650-mRNA-1:cds;Parent=Msa0689650-mRNA-1 |
| chr4_4 | CDS | 56816515 | 56816699 | 56816515 | ID=Msa0689650-mRNA-1:cds;Parent=Msa0689650-mRNA-1 |
| chr4_4 | CDS | 56816317 | 56816374 | 56816317 | ID=Msa0689650-mRNA-1:cds;Parent=Msa0689650-mRNA-1 |
| chr4_4 | CDS | 56815852 | 56815954 | 56815852 | ID=Msa0689650-mRNA-1:cds;Parent=Msa0689650-mRNA-1 |
| chr4_4 | three_prime_UTR | 56815647 | 56815851 | 56815647 | ID=Msa0689650-mRNA-1:three_prime_utr;Parent=Msa0689650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
