Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416010 | sp|Q9LMA8|TI10A_ARATH | 36.328 | 256 | 106 | 10 | 1 | 203 | 1 | 252 | 1.12e-34 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416010 | G7JS78 | 93.171 | 205 | 10 | 2 | 1 | 204 | 1 | 202 | 1.52e-125 | 362 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1416010 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1363020 | Msa1416010 | 0.871149 | 8.513032e-67 | -8.615850e-47 |
| Msa0689650 | Msa1416010 | 0.943145 | 2.037200e-102 | -8.615850e-47 |
| Msa0203400 | Msa1416010 | 0.824710 | 6.963656e-54 | -8.615850e-47 |
| Msa1303870 | Msa1416010 | 0.943714 | 7.306911e-103 | -8.615850e-47 |
| Msa0246540 | Msa1416010 | 0.858952 | 5.785840e-63 | -8.615850e-47 |
| Msa0323880 | Msa1416010 | 0.843537 | 1.318170e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416010 | MtrunA17_Chr4g0070271 | 93.171 | 205 | 10 | 2 | 1 | 204 | 1 | 202 | 2.94e-129 | 362 |
| Msa1416010 | MtrunA17_Chr2g0301131 | 44.828 | 261 | 76 | 11 | 1 | 204 | 1 | 250 | 1.53e-49 | 161 |
| Msa1416010 | MtrunA17_Chr4g0070241 | 79.688 | 64 | 13 | 0 | 70 | 133 | 1 | 64 | 2.88e-29 | 104 |
| Msa1416010 | MtrunA17_Chr5g0399881 | 36.478 | 159 | 71 | 5 | 76 | 204 | 5 | 163 | 1.83e-21 | 87.0 |
| Msa1416010 | MtrunA17_Chr5g0399861 | 32.515 | 163 | 71 | 4 | 76 | 204 | 5 | 162 | 4.07e-21 | 85.9 |
| Msa1416010 | MtrunA17_Chr5g0399851 | 36.364 | 132 | 60 | 2 | 94 | 201 | 11 | 142 | 2.98e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416010 | AT1G19180.1 | 36.328 | 256 | 106 | 10 | 1 | 203 | 1 | 252 | 1.14e-35 | 126 |
| Msa1416010 | AT1G19180.3 | 36.328 | 256 | 106 | 10 | 1 | 203 | 1 | 252 | 1.14e-35 | 126 |
| Msa1416010 | AT1G74950.1 | 35.745 | 235 | 84 | 10 | 7 | 180 | 1 | 229 | 2.15e-27 | 104 |
| Msa1416010 | AT1G74950.2 | 35.683 | 227 | 79 | 10 | 7 | 172 | 1 | 221 | 5.94e-24 | 95.1 |
| Msa1416010 | AT1G19180.2 | 39.098 | 133 | 52 | 5 | 99 | 203 | 55 | 186 | 1.19e-18 | 80.1 |
| Msa1416010 | AT1G17380.1 | 29.353 | 201 | 108 | 5 | 13 | 180 | 7 | 206 | 6.92e-14 | 68.9 |
Find 48 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGACTTCATCGGACATTTC+TGG | 0.184990 | tig0024312:+1233 | Msa1416010:CDS |
| ATTGTCAATTGTGCAGTTTC+TGG | 0.207124 | tig0024312:-1856 | Msa1416010:intergenic |
| CCTTCTTCTCCTTGAGGTAT+TGG | 0.218986 | tig0024312:-1325 | Msa1416010:intergenic |
| GGTTGTTGAGGGATCATATT+AGG | 0.246891 | tig0024312:-1979 | Msa1416010:intergenic |
| CAACAACCTCCCTCACTAAT+TGG | 0.267401 | tig0024312:+1994 | Msa1416010:CDS |
| AGCTTCACTTCGTCGATTCA+TGG | 0.304214 | tig0024312:+2175 | Msa1416010:CDS |
| TCAGGAAAGGTTCTTTGATA+TGG | 0.341074 | tig0024312:-2623 | Msa1416010:intergenic |
| TTTATTTACCATTTGTTTCA+GGG | 0.363709 | tig0024312:-1385 | Msa1416010:intergenic |
| CGACTTTATCAGTTTGTTGC+CGG | 0.376712 | tig0024312:-1261 | Msa1416010:intergenic |
| AGCTCCTCAACTTTCTCAGC+AGG | 0.410410 | tig0024312:-1916 | Msa1416010:intergenic |
| TCCGCTCCATGGCTTGTGTT+AGG | 0.414480 | tig0024312:+2671 | Msa1416010:CDS |
| TTACAGAGTTATTAATCCTA+TGG | 0.427315 | tig0024312:+1825 | Msa1416010:intron |
| TCATGGAGAAGAGGAAAGAT+AGG | 0.451183 | tig0024312:+2192 | Msa1416010:CDS |
| GTTTCTGGCTCTTTAACCAT+AGG | 0.475200 | tig0024312:-1841 | Msa1416010:intergenic |
| CCAATACCTCAAGGAGAAGA+AGG | 0.480824 | tig0024312:+1325 | Msa1416010:CDS |
| CAATCTACAGGGTCATCACC+TGG | 0.484929 | tig0024312:+1605 | Msa1416010:intron |
| TTAGTGAGGGAGGTTGTTGA+GGG | 0.495882 | tig0024312:-1990 | Msa1416010:intergenic |
| TTATTTACCATTTGTTTCAG+GGG | 0.508177 | tig0024312:-1384 | Msa1416010:intergenic |
| ACGAACAGAAAGTGGGTTGA+AGG | 0.513252 | tig0024312:-1197 | Msa1416010:intergenic |
| GATACCAATGTCGACTTCAT+CGG | 0.515126 | tig0024312:+1223 | Msa1416010:exon |
| ATTAGTGAGGGAGGTTGTTG+AGG | 0.517348 | tig0024312:-1991 | Msa1416010:intergenic |
| GCATGCACCCCTGAAACAAA+TGG | 0.517892 | tig0024312:+1377 | Msa1416010:CDS |
| TAATGGACAAGTTATTGTGT+TGG | 0.534161 | tig0024312:+1885 | Msa1416010:CDS |
| GAGAAGAAGGGTAGTTTCGA+AGG | 0.535740 | tig0024312:+1338 | Msa1416010:CDS |
| CAGGGGTGCATGCGTTGTGA+AGG | 0.536647 | tig0024312:-1367 | Msa1416010:intergenic |
| CCTGGTTCATCTTCTCACTC+TGG | 0.547944 | tig0024312:+1623 | Msa1416010:CDS |
| CCAGAGTGAGAAGATGAACC+AGG | 0.548191 | tig0024312:-1623 | Msa1416010:intergenic |
| AGCATGCTGACTCCGCTCCA+TGG | 0.562298 | tig0024312:+2660 | Msa1416010:CDS |
| TAACTTAGTTCTATTAGCTG+AGG | 0.565990 | tig0024312:+2837 | Msa1416010:three_prime_UTR |
| GTATCTACACGAACAGAAAG+TGG | 0.569348 | tig0024312:-1205 | Msa1416010:intergenic |
| TGCATGCGTTGTGAAGGTTA+AGG | 0.575616 | tig0024312:-1361 | Msa1416010:intergenic |
| AAATCAATTACCAATTAGTG+AGG | 0.584879 | tig0024312:-2004 | Msa1416010:intergenic |
| GGTTCTTTGATATGGTGAGT+AGG | 0.584950 | tig0024312:-2615 | Msa1416010:intergenic |
| TTCTGGAGCAGAGTCAGGAA+AGG | 0.587295 | tig0024312:-2636 | Msa1416010:intergenic |
| GTTTGTGGGAAATAAATCCA+TGG | 0.589977 | tig0024312:-1651 | Msa1416010:intergenic |
| TTAGCACCTAACACAAGCCA+TGG | 0.596993 | tig0024312:-2677 | Msa1416010:intergenic |
| AACTACCCTTCTTCTCCTTG+AGG | 0.603992 | tig0024312:-1331 | Msa1416010:intergenic |
| TTCTCACTCTGGAATAACCA+TGG | 0.605298 | tig0024312:+1634 | Msa1416010:CDS |
| CAATTACCAATTAGTGAGGG+AGG | 0.610131 | tig0024312:-2000 | Msa1416010:intergenic |
| CAATACCTCAAGGAGAAGAA+GGG | 0.616382 | tig0024312:+1326 | Msa1416010:CDS |
| TTCGTCGATTCATGGAGAAG+AGG | 0.618289 | tig0024312:+2183 | Msa1416010:CDS |
| ACCTAACACAAGCCATGGAG+CGG | 0.623220 | tig0024312:-2672 | Msa1416010:intergenic |
| TCTATTGAGCCAATACCTCA+AGG | 0.624878 | tig0024312:+1316 | Msa1416010:CDS |
| AATCAATTACCAATTAGTGA+GGG | 0.634671 | tig0024312:-2003 | Msa1416010:intergenic |
| ATGTCCGATGAAGTCGACAT+TGG | 0.636880 | tig0024312:-1227 | Msa1416010:intergenic |
| TTACAAGTTTGAGAAAACGT+AGG | 0.650898 | tig0024312:-1293 | Msa1416010:intergenic |
| CAACAAACTGATAAAGTCGT+CGG | 0.655555 | tig0024312:+1265 | Msa1416010:CDS |
| TATCTACACGAACAGAAAGT+GGG | 0.660823 | tig0024312:-1204 | Msa1416000:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTAATTTAACTGA+TGG | + | tig0024312:2113-2132 | Msa1416010:intron | 10.0% |
| !!! | TCTCATAATAAATCTTTTTT+CGG | + | tig0024312:2323-2342 | Msa1416010:intron | 15.0% |
| !! | TTTATTTACCATTTGTTTCA+GGG | - | tig0024312:1388-1407 | Msa1416010:intergenic | 20.0% |
| !!! | TTTTATTTACCATTTGTTTC+AGG | - | tig0024312:1389-1408 | Msa1416010:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTCAATCTAC+AGG | + | tig0024312:1593-1612 | Msa1416010:intron | 20.0% |
| !!! | TTTTCTTTTTTCAATCTACA+GGG | + | tig0024312:1594-1613 | Msa1416010:intron | 20.0% |
| !!! | CAATTGACAATGTTTTATAA+TGG | + | tig0024312:1868-1887 | Msa1416010:CDS | 20.0% |
| !!! | ATAATAAATCTTTTTTCGGT+TGG | + | tig0024312:2327-2346 | Msa1416010:intron | 20.0% |
| !! | GAATGACAAAAATTAATTAC+AGG | - | tig0024312:2887-2906 | Msa1416010:intergenic | 20.0% |
| ! | TTATTTACCATTTGTTTCAG+GGG | - | tig0024312:1387-1406 | Msa1416010:intergenic | 25.0% |
| !! | AATTCAGTTCCTATAGTTTT+GGG | + | tig0024312:1425-1444 | Msa1416010:intron | 25.0% |
| !! | TTTTTGACCAAGTTCATTTA+AGG | - | tig0024312:1490-1509 | Msa1416010:intergenic | 25.0% |
| ! | AAATGAACTTGGTCAAAAAA+TGG | + | tig0024312:1491-1510 | Msa1416010:intron | 25.0% |
| !!! | TTCCCTTATTTTTCTCTATT+CGG | + | tig0024312:1545-1564 | Msa1416010:intron | 25.0% |
| ! | AACCGAATAGAGAAAAATAA+GGG | - | tig0024312:1550-1569 | Msa1416010:intergenic | 25.0% |
| ! | TAACCGAATAGAGAAAAATA+AGG | - | tig0024312:1551-1570 | Msa1416010:intergenic | 25.0% |
| ! | AGAAAAAATCCATAGTTGTA+AGG | - | tig0024312:1691-1710 | Msa1416010:intergenic | 25.0% |
| ! | TTACAGAGTTATTAATCCTA+TGG | + | tig0024312:1825-1844 | Msa1416010:intron | 25.0% |
| ! | AATCAATTACCAATTAGTGA+GGG | - | tig0024312:2006-2025 | Msa1416010:intergenic | 25.0% |
| ! | AAATCAATTACCAATTAGTG+AGG | - | tig0024312:2007-2026 | Msa1416010:intergenic | 25.0% |
| !! | TTGTGATTTGAAACAAATAC+AGG | + | tig0024312:2052-2071 | Msa1416010:intron | 25.0% |
| !! | CAAATACAGGAAATTGTTTT+TGG | + | tig0024312:2065-2084 | Msa1416010:intron | 25.0% |
| !!! | ATTTAATTTGTTTGAGAGAG+AGG | - | tig0024312:2222-2241 | Msa1416010:intergenic | 25.0% |
| ! | AATCCAAAATCCAAATTAGT+TGG | - | tig0024312:2355-2374 | Msa1416010:intergenic | 25.0% |
| !!! | TTGAACATTTTTTGAGCTTT+TGG | + | tig0024312:2373-2392 | Msa1416010:intron | 25.0% |
| ! | CTTGATAAGTAAATAACAAG+AGG | - | tig0024312:2519-2538 | Msa1416010:intergenic | 25.0% |
| TTACAAGTTTGAGAAAACGT+AGG | - | tig0024312:1296-1315 | Msa1416010:intergenic | 30.0% | |
| ! | CAATTCAGTTCCTATAGTTT+TGG | + | tig0024312:1424-1443 | Msa1416010:intron | 30.0% |
| !! | ATTCAGTTCCTATAGTTTTG+GGG | + | tig0024312:1426-1445 | Msa1416010:intron | 30.0% |
| ATTCTAAACCCCAAAACTAT+AGG | - | tig0024312:1437-1456 | Msa1416010:intergenic | 30.0% | |
| TAGTCTTCCTTAAATGAACT+TGG | + | tig0024312:1480-1499 | Msa1416010:intron | 30.0% | |
| TTTCTCTATTCGGTTACAAT+TGG | + | tig0024312:1555-1574 | Msa1416010:intron | 30.0% | |
| TTCTCTATTCGGTTACAATT+GGG | + | tig0024312:1556-1575 | Msa1416010:intron | 30.0% | |
| ! | TCCATAGTTGTAAGGTTTTT+CGG | - | tig0024312:1683-1702 | Msa1416010:intergenic | 30.0% |
| !!! | CTATGGATTTTTTCTTTCCA+AGG | + | tig0024312:1696-1715 | Msa1416010:CDS | 30.0% |
| AATTGCAATGACTCAAACAA+TGG | - | tig0024312:1773-1792 | Msa1416010:intergenic | 30.0% | |
| ! | TAATGGACAAGTTATTGTGT+TGG | + | tig0024312:1885-1904 | Msa1416010:CDS | 30.0% |
| !!! | AGGAAATTGTTTTTGGTATC+AGG | + | tig0024312:2072-2091 | Msa1416010:intron | 30.0% |
| !!! | GGAAATTGTTTTTGGTATCA+GGG | + | tig0024312:2073-2092 | Msa1416010:intron | 30.0% |
| ! | GTACCAACTAATTTGGATTT+TGG | + | tig0024312:2349-2368 | Msa1416010:intron | 30.0% |
| !! | TAACTTAGTTCTATTAGCTG+AGG | + | tig0024312:2837-2856 | Msa1416010:three_prime_UTR | 30.0% |
| TATCTACACGAACAGAAAGT+GGG | - | tig0024312:1207-1226 | None:intergenic | 35.0% | |
| CAACAAACTGATAAAGTCGT+CGG | + | tig0024312:1265-1284 | Msa1416010:CDS | 35.0% | |
| GTTTGTGGGAAATAAATCCA+TGG | - | tig0024312:1654-1673 | Msa1416010:intergenic | 35.0% | |
| ACCGAAAAACCTTACAACTA+TGG | + | tig0024312:1679-1698 | Msa1416010:CDS | 35.0% | |
| ! | AAAAGCACAAAAACTCACCT+TGG | - | tig0024312:1716-1735 | Msa1416010:intergenic | 35.0% |
| ATTGTCAATTGTGCAGTTTC+TGG | - | tig0024312:1859-1878 | Msa1416010:intergenic | 35.0% | |
| !! | AGTGAAGCTTTTCTAGCAAT+TGG | - | tig0024312:2164-2183 | Msa1416010:intergenic | 35.0% |
| ATGCATGCATAGCATAAATC+TGG | + | tig0024312:2398-2417 | Msa1416010:intron | 35.0% | |
| ATTTCCAGTCACACAAAGAA+AGG | - | tig0024312:2424-2443 | Msa1416010:intergenic | 35.0% | |
| TCAGGAAAGGTTCTTTGATA+TGG | - | tig0024312:2626-2645 | Msa1416010:intergenic | 35.0% | |
| GTATCTACACGAACAGAAAG+TGG | - | tig0024312:1208-1227 | None:intergenic | 40.0% | |
| !! | GATACCAATGTCGACTTCAT+CGG | + | tig0024312:1223-1242 | Msa1416010:exon | 40.0% |
| !!! | TCGGACATTTCTGGTTTTTC+CGG | + | tig0024312:1242-1261 | Msa1416010:CDS | 40.0% |
| !! | CGACTTTATCAGTTTGTTGC+CGG | - | tig0024312:1264-1283 | Msa1416010:intergenic | 40.0% |
| TCTATTGAGCCAATACCTCA+AGG | + | tig0024312:1316-1335 | Msa1416010:CDS | 40.0% | |
| CAATACCTCAAGGAGAAGAA+GGG | + | tig0024312:1326-1345 | Msa1416010:CDS | 40.0% | |
| !! | TTCTCACTCTGGAATAACCA+TGG | + | tig0024312:1634-1653 | Msa1416010:CDS | 40.0% |
| !!! | TTTTTCGGTGTCACGTTTGT+GGG | - | tig0024312:1668-1687 | Msa1416010:intergenic | 40.0% |
| !! | GTTTCTGGCTCTTTAACCAT+AGG | - | tig0024312:1844-1863 | Msa1416010:intergenic | 40.0% |
| ! | TTTTCCTGCTGAGAAAGTTG+AGG | + | tig0024312:1912-1931 | Msa1416010:CDS | 40.0% |
| GGTTGTTGAGGGATCATATT+AGG | - | tig0024312:1982-2001 | Msa1416010:intergenic | 40.0% | |
| CAATTACCAATTAGTGAGGG+AGG | - | tig0024312:2003-2022 | Msa1416010:intergenic | 40.0% | |
| TCATGGAGAAGAGGAAAGAT+AGG | + | tig0024312:2192-2211 | Msa1416010:CDS | 40.0% | |
| ! | TCGGTTGGTACCAACTAATT+TGG | + | tig0024312:2342-2361 | Msa1416010:intron | 40.0% |
| AGGCAAAGCAATTTGCACAA+TGG | - | tig0024312:2499-2518 | Msa1416010:intergenic | 40.0% | |
| GGTTCTTTGATATGGTGAGT+AGG | - | tig0024312:2618-2637 | Msa1416010:intergenic | 40.0% | |
| !! | ACGAACAGAAAGTGGGTTGA+AGG | - | tig0024312:1200-1219 | None:intergenic | 45.0% |
| ATGTCCGATGAAGTCGACAT+TGG | - | tig0024312:1230-1249 | Msa1416010:intergenic | 45.0% | |
| TCGACTTCATCGGACATTTC+TGG | + | tig0024312:1233-1252 | Msa1416010:CDS | 45.0% | |
| CCTTCTTCTCCTTGAGGTAT+TGG | - | tig0024312:1328-1347 | Msa1416010:intergenic | 45.0% | |
| CCAATACCTCAAGGAGAAGA+AGG | + | tig0024312:1325-1344 | Msa1416010:CDS | 45.0% | |
| AACTACCCTTCTTCTCCTTG+AGG | - | tig0024312:1334-1353 | Msa1416010:intergenic | 45.0% | |
| GAGAAGAAGGGTAGTTTCGA+AGG | + | tig0024312:1338-1357 | Msa1416010:CDS | 45.0% | |
| TGCATGCGTTGTGAAGGTTA+AGG | - | tig0024312:1364-1383 | Msa1416010:intergenic | 45.0% | |
| !!! | GTTTTTCGGTGTCACGTTTG+TGG | - | tig0024312:1669-1688 | Msa1416010:intergenic | 45.0% |
| TTAGTGAGGGAGGTTGTTGA+GGG | - | tig0024312:1993-2012 | Msa1416010:intergenic | 45.0% | |
| ATTAGTGAGGGAGGTTGTTG+AGG | - | tig0024312:1994-2013 | Msa1416010:intergenic | 45.0% | |
| CAACAACCTCCCTCACTAAT+TGG | + | tig0024312:1994-2013 | Msa1416010:CDS | 45.0% | |
| !! | AGCTTCACTTCGTCGATTCA+TGG | + | tig0024312:2175-2194 | Msa1416010:CDS | 45.0% |
| !! | TTCGTCGATTCATGGAGAAG+AGG | + | tig0024312:2183-2202 | Msa1416010:CDS | 45.0% |
| TTAGCACCTAACACAAGCCA+TGG | - | tig0024312:2680-2699 | Msa1416010:intergenic | 45.0% | |
| !! | AATAACAATATTATTAAATT+AGG | - | tig0024312:2567-2586 | Msa1416010:intergenic | 5.0% |
| !! | TAAAAATAATAAACAAAAAA+AGG | - | tig0024312:2756-2775 | Msa1416010:intergenic | 5.0% |
| !!! | TTTATTATTTTTATTTTGAT+CGG | + | tig0024312:2763-2782 | Msa1416010:three_prime_UTR | 5.0% |
| GCATGCACCCCTGAAACAAA+TGG | + | tig0024312:1377-1396 | Msa1416010:CDS | 50.0% | |
| CAATCTACAGGGTCATCACC+TGG | + | tig0024312:1605-1624 | Msa1416010:intron | 50.0% | |
| CCAGAGTGAGAAGATGAACC+AGG | - | tig0024312:1626-1645 | Msa1416010:intergenic | 50.0% | |
| CCTGGTTCATCTTCTCACTC+TGG | + | tig0024312:1623-1642 | Msa1416010:CDS | 50.0% | |
| AGCTCCTCAACTTTCTCAGC+AGG | - | tig0024312:1919-1938 | Msa1416010:intergenic | 50.0% | |
| ! | CTGGCCTTTCTTTGTGTGAC+TGG | + | tig0024312:2417-2436 | Msa1416010:intron | 50.0% |
| !! | TTCTGGAGCAGAGTCAGGAA+AGG | - | tig0024312:2639-2658 | Msa1416010:intergenic | 50.0% |
| !!! | TGCTTTTCTGGAGCAGAGTC+AGG | - | tig0024312:2644-2663 | Msa1416010:intergenic | 50.0% |
| ACCTAACACAAGCCATGGAG+CGG | - | tig0024312:2675-2694 | Msa1416010:intergenic | 50.0% | |
| ! | GCGGAGTCAGCATGCTTTTC+TGG | - | tig0024312:2656-2675 | Msa1416010:intergenic | 55.0% |
| ! | TCCGCTCCATGGCTTGTGTT+AGG | + | tig0024312:2671-2690 | Msa1416010:CDS | 55.0% |
| ! | CAGGGGTGCATGCGTTGTGA+AGG | - | tig0024312:1370-1389 | Msa1416010:intergenic | 60.0% |
| !! | AGCATGCTGACTCCGCTCCA+TGG | + | tig0024312:2660-2679 | Msa1416010:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024312 | gene | 1138 | 2916 | 1138 | ID=Msa1416010;Name=Msa1416010 |
| tig0024312 | mRNA | 1138 | 2916 | 1138 | ID=Msa1416010-mRNA-1;Parent=Msa1416010;Name=Msa1416010-mRNA-1;_AED=0.10;_eAED=0.10;_QI=92|1|1|1|1|1|5|207|205 |
| tig0024312 | exon | 1138 | 1398 | 1138 | ID=Msa1416010-mRNA-1:exon:22724;Parent=Msa1416010-mRNA-1 |
| tig0024312 | exon | 1615 | 1717 | 1615 | ID=Msa1416010-mRNA-1:exon:22725;Parent=Msa1416010-mRNA-1 |
| tig0024312 | exon | 1831 | 2015 | 1831 | ID=Msa1416010-mRNA-1:exon:22726;Parent=Msa1416010-mRNA-1 |
| tig0024312 | exon | 2156 | 2213 | 2156 | ID=Msa1416010-mRNA-1:exon:22727;Parent=Msa1416010-mRNA-1 |
| tig0024312 | exon | 2607 | 2916 | 2607 | ID=Msa1416010-mRNA-1:exon:22728;Parent=Msa1416010-mRNA-1 |
| tig0024312 | five_prime_UTR | 1138 | 1229 | 1138 | ID=Msa1416010-mRNA-1:five_prime_utr;Parent=Msa1416010-mRNA-1 |
| tig0024312 | CDS | 1230 | 1398 | 1230 | ID=Msa1416010-mRNA-1:cds;Parent=Msa1416010-mRNA-1 |
| tig0024312 | CDS | 1615 | 1717 | 1615 | ID=Msa1416010-mRNA-1:cds;Parent=Msa1416010-mRNA-1 |
| tig0024312 | CDS | 1831 | 2015 | 1831 | ID=Msa1416010-mRNA-1:cds;Parent=Msa1416010-mRNA-1 |
| tig0024312 | CDS | 2156 | 2213 | 2156 | ID=Msa1416010-mRNA-1:cds;Parent=Msa1416010-mRNA-1 |
| tig0024312 | CDS | 2607 | 2709 | 2607 | ID=Msa1416010-mRNA-1:cds;Parent=Msa1416010-mRNA-1 |
| tig0024312 | three_prime_UTR | 2710 | 2916 | 2710 | ID=Msa1416010-mRNA-1:three_prime_utr;Parent=Msa1416010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
