Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246540 | XP_003595354.1 | 96.443 | 253 | 6 | 1 | 1 | 250 | 1 | 253 | 2.77e-178 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246540 | sp|Q9S7M2|TI10B_ARATH | 37.143 | 280 | 101 | 9 | 2 | 242 | 3 | 246 | 3.11e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246540 | G7IIQ4 | 96.443 | 253 | 6 | 1 | 1 | 250 | 1 | 253 | 1.32e-178 | 500 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0246540 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0203400 | Msa0246540 | 0.943358 | 1.388781e-102 | -8.615850e-47 |
| Msa0246540 | Msa0323880 | 0.956338 | 3.728939e-114 | -8.615850e-47 |
| Msa0246540 | Msa0649460 | 0.815690 | 8.124920e-52 | -8.615850e-47 |
| Msa0246540 | Msa0689650 | 0.839671 | 1.378171e-57 | -8.615850e-47 |
| Msa0246540 | Msa0799620 | 0.824942 | 6.141056e-54 | -8.615850e-47 |
| Msa0246540 | Msa1130470 | 0.805832 | 1.103408e-49 | -8.615850e-47 |
| Msa0246540 | Msa1130490 | 0.800953 | 1.131566e-48 | -8.615850e-47 |
| Msa0246540 | Msa1276810 | 0.818085 | 2.356634e-52 | -8.615850e-47 |
| Msa0246540 | Msa1303870 | 0.831221 | 1.887085e-55 | -8.615850e-47 |
| Msa0246540 | Msa1363020 | 0.826281 | 2.956203e-54 | -8.615850e-47 |
| Msa0246540 | Msa1382130 | 0.804661 | 1.940436e-49 | -8.615850e-47 |
| Msa0246540 | Msa1416010 | 0.858952 | 5.785840e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246540 | MtrunA17_Chr2g0301131 | 96.443 | 253 | 6 | 1 | 1 | 250 | 1 | 253 | 0.0 | 500 |
| Msa0246540 | MtrunA17_Chr4g0070271 | 44.961 | 258 | 77 | 10 | 1 | 248 | 1 | 203 | 1.53e-48 | 159 |
| Msa0246540 | MtrunA17_Chr5g0399851 | 45.513 | 156 | 47 | 6 | 99 | 242 | 10 | 139 | 5.37e-35 | 122 |
| Msa0246540 | MtrunA17_Chr5g0399881 | 44.512 | 164 | 43 | 5 | 96 | 242 | 25 | 157 | 1.09e-33 | 120 |
| Msa0246540 | MtrunA17_Chr5g0399861 | 42.162 | 185 | 58 | 7 | 76 | 242 | 3 | 156 | 1.84e-33 | 119 |
| Msa0246540 | MtrunA17_Chr8g0344481 | 32.018 | 228 | 121 | 6 | 12 | 233 | 11 | 210 | 1.00e-22 | 93.2 |
| Msa0246540 | MtrunA17_Chr4g0070241 | 55.882 | 68 | 24 | 3 | 69 | 136 | 1 | 62 | 3.22e-15 | 68.9 |
| Msa0246540 | MtrunA17_Chr2g0302041 | 32.031 | 128 | 62 | 5 | 109 | 230 | 58 | 166 | 1.56e-13 | 67.4 |
| Msa0246540 | MtrunA17_Chr1g0161031 | 30.460 | 174 | 67 | 4 | 107 | 237 | 172 | 334 | 6.16e-12 | 64.7 |
| Msa0246540 | MtrunA17_Chr4g0069721 | 29.771 | 131 | 69 | 4 | 105 | 230 | 41 | 153 | 5.12e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246540 | AT1G74950.1 | 37.143 | 280 | 101 | 9 | 2 | 242 | 3 | 246 | 3.17e-43 | 147 |
| Msa0246540 | AT1G19180.1 | 37.037 | 270 | 119 | 8 | 1 | 242 | 1 | 247 | 5.39e-41 | 141 |
| Msa0246540 | AT1G19180.3 | 37.037 | 270 | 119 | 8 | 1 | 242 | 1 | 247 | 5.39e-41 | 141 |
| Msa0246540 | AT1G74950.2 | 36.863 | 255 | 92 | 8 | 2 | 223 | 3 | 221 | 5.65e-37 | 130 |
| Msa0246540 | AT1G72450.1 | 32.328 | 232 | 121 | 9 | 17 | 234 | 4 | 213 | 3.23e-27 | 106 |
| Msa0246540 | AT1G17380.1 | 30.677 | 251 | 129 | 7 | 1 | 241 | 1 | 216 | 6.13e-25 | 100 |
| Msa0246540 | AT1G19180.2 | 39.041 | 146 | 59 | 4 | 106 | 242 | 57 | 181 | 1.94e-22 | 91.3 |
| Msa0246540 | AT1G72450.2 | 30.317 | 221 | 118 | 9 | 17 | 223 | 4 | 202 | 3.26e-22 | 91.3 |
| Msa0246540 | AT1G17380.3 | 29.954 | 217 | 114 | 6 | 17 | 223 | 10 | 198 | 1.84e-19 | 84.3 |
| Msa0246540 | AT1G17380.2 | 34.507 | 142 | 59 | 5 | 105 | 236 | 65 | 182 | 4.04e-14 | 70.1 |
| Msa0246540 | AT5G20900.1 | 31.746 | 126 | 63 | 3 | 109 | 230 | 57 | 163 | 5.89e-12 | 63.2 |
| Msa0246540 | AT3G17860.1 | 33.544 | 158 | 70 | 7 | 108 | 234 | 177 | 330 | 2.70e-11 | 63.2 |
| Msa0246540 | AT3G17860.3 | 33.544 | 158 | 70 | 7 | 108 | 234 | 144 | 297 | 2.85e-11 | 62.8 |
| Msa0246540 | AT3G17860.4 | 33.544 | 158 | 70 | 7 | 108 | 234 | 144 | 297 | 2.85e-11 | 62.8 |
| Msa0246540 | AT3G17860.2 | 33.544 | 158 | 70 | 7 | 108 | 234 | 164 | 317 | 4.33e-11 | 62.4 |
Find 76 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACTTTGAAGTGTGTTTC+TGG | 0.099067 | 2_2:+27846209 | Msa0246540:three_prime_UTR |
| GATTCTTTGTGTTGTTGTTT+TGG | 0.231522 | 2_2:-27843546 | None:intergenic |
| TTTATTGAGTCAATATATTA+AGG | 0.231958 | 2_2:+27843738 | Msa0246540:CDS |
| AGCTTCGCTTCATCGGTTTC+TGG | 0.246045 | 2_2:+27845493 | Msa0246540:CDS |
| GCCTTCATTTCCTCCTAATT+TGG | 0.255924 | 2_2:+27845238 | Msa0246540:CDS |
| AGCGAAGCTTTCCTCATAAT+TGG | 0.256396 | 2_2:-27845479 | None:intergenic |
| GCTGGCTTATTAACTTGATA+TGG | 0.264533 | 2_2:-27845693 | None:intergenic |
| CCGGTGCCGGTGCCGGTACT+AGG | 0.269254 | 2_2:-27845314 | None:intergenic |
| CATGAGCTCATGTGCTTTAT+CGG | 0.271727 | 2_2:-27845150 | None:intergenic |
| ACCGAAGTTCTGACCAAATT+AGG | 0.285058 | 2_2:-27845251 | None:intergenic |
| CTCTTGTTGAATCTGTTCAT+TGG | 0.295419 | 2_2:+27846183 | Msa0246540:three_prime_UTR |
| GGTTAAGATCTAATATGTTA+TGG | 0.298064 | 2_2:+27845939 | Msa0246540:three_prime_UTR |
| TCGGAATATTCAGAAGTTTC+CGG | 0.324209 | 2_2:+27843661 | Msa0246540:CDS |
| AGCCAAAGTATGACAAATAA+AGG | 0.324360 | 2_2:-27845975 | None:intergenic |
| ATTGTCAATTGTGCAGCTTT+AGG | 0.328266 | 2_2:-27845086 | None:intergenic |
| CTTCGCCGGTGGTTTGTTGC+CGG | 0.328284 | 2_2:-27843680 | None:intergenic |
| GTTAAGATCTAATATGTTAT+GGG | 0.344196 | 2_2:+27845940 | Msa0246540:three_prime_UTR |
| GCCCTTTATTTGTCATACTT+TGG | 0.360012 | 2_2:+27845973 | Msa0246540:three_prime_UTR |
| TTGTCATACTTTGGCTCCAA+TGG | 0.364404 | 2_2:+27845982 | Msa0246540:three_prime_UTR |
| GAGTCAATATATTAAGGAAA+AGG | 0.376605 | 2_2:+27843744 | Msa0246540:CDS |
| TGCTTCAAAGATCTTTCTCT+TGG | 0.389248 | 2_2:+27843769 | Msa0246540:CDS |
| ACAAAAGAACCTTACCACTA+TGG | 0.390153 | 2_2:+27844478 | Msa0246540:CDS |
| CATGGTTGGAAACAAGTTCA+TGG | 0.390560 | 2_2:-27844441 | None:intergenic |
| AAGAAATTACCGCAAAGATT+AGG | 0.403918 | 2_2:-27845371 | None:intergenic |
| AGTCAATATATTAAGGAAAA+GGG | 0.413916 | 2_2:+27843745 | Msa0246540:CDS |
| TTGCAGATCTGCCAATTATG+AGG | 0.435886 | 2_2:+27845468 | Msa0246540:intron |
| TGTCATACTTTGGCTCCAAT+GGG | 0.437993 | 2_2:+27845983 | Msa0246540:three_prime_UTR |
| GTTCAAAAGTTGTTAATCGT+TGG | 0.438811 | 2_2:+27846158 | Msa0246540:three_prime_UTR |
| AATGATTTGCAGTGCTATCA+AGG | 0.444008 | 2_2:+27845061 | Msa0246540:intron |
| CCTTCCAGACCTAATCTTTG+CGG | 0.448657 | 2_2:+27845362 | Msa0246540:CDS |
| TTCATTAATCGAGCCGGTGC+CGG | 0.460250 | 2_2:-27845327 | None:intergenic |
| AATCGAGCCGGTGCCGGTGC+CGG | 0.469663 | 2_2:-27845321 | None:intergenic |
| ATTACCGCAAAGATTAGGTC+TGG | 0.470927 | 2_2:-27845366 | None:intergenic |
| AGCTCATGTGCTTTATCGGC+AGG | 0.475762 | 2_2:-27845146 | None:intergenic |
| GCCAAAGTATGACAAATAAA+GGG | 0.482335 | 2_2:-27845974 | None:intergenic |
| GAGTCCATGTCATGGCTTGT+GGG | 0.483230 | 2_2:+27845717 | Msa0246540:CDS |
| CCTAGTACCGGCACCGGCAC+CGG | 0.497440 | 2_2:+27845314 | Msa0246540:CDS |
| TCCTAATTTGGTCAGAACTT+CGG | 0.497883 | 2_2:+27845250 | Msa0246540:CDS |
| TGAGGAAAGCTTCGCTTCAT+CGG | 0.498790 | 2_2:+27845486 | Msa0246540:CDS |
| TAGGTCTGGAAGGCACTTGA+AGG | 0.506440 | 2_2:-27845352 | None:intergenic |
| ACATGCAACACAGACCCTTC+TGG | 0.507485 | 2_2:+27843796 | Msa0246540:CDS |
| TCGGTTTCTGGAGAAGAGAA+AGG | 0.512539 | 2_2:+27845505 | Msa0246540:CDS |
| CAAACCACCGGCGAAGTCAC+CGG | 0.513459 | 2_2:+27843687 | Msa0246540:CDS |
| CATGAACTTGTTTCCAACCA+TGG | 0.520010 | 2_2:+27844442 | Msa0246540:CDS |
| ATAAGATGAATAAAATTCAA+TGG | 0.527658 | 2_2:-27846093 | None:intergenic |
| CGGTGCCGGTGCCGGTACTA+GGG | 0.528441 | 2_2:-27845313 | None:intergenic |
| CGATAAAGCACATGAGCTCA+TGG | 0.531706 | 2_2:+27845151 | Msa0246540:CDS |
| ATTAACTTGATATGGTGCAT+TGG | 0.537946 | 2_2:-27845685 | None:intergenic |
| TGAGTCCATGTCATGGCTTG+TGG | 0.539136 | 2_2:+27845716 | Msa0246540:CDS |
| GAATTGTTCAAAGCAGCTTG+TGG | 0.542652 | 2_2:-27844512 | None:intergenic |
| TTCAATGGTACCAGTACCAA+TGG | 0.550482 | 2_2:-27846078 | None:intergenic |
| CAATGGGCCTTATCATACAT+AGG | 0.551563 | 2_2:+27845999 | Msa0246540:three_prime_UTR |
| TTCAACTATGTCTACCTCAT+CGG | 0.558400 | 2_2:+27843642 | Msa0246540:exon |
| ATGTTCACAGTAGGAACGAT+TGG | 0.560290 | 2_2:-27845287 | None:intergenic |
| TGCACCCACAAGCCATGACA+TGG | 0.562173 | 2_2:-27845721 | None:intergenic |
| ACCAAATTAGGAGGAAATGA+AGG | 0.565826 | 2_2:-27845239 | None:intergenic |
| TTCTCCGGTGACTTCGCCGG+TGG | 0.568647 | 2_2:-27843691 | None:intergenic |
| CTATGTATGATAAGGCCCAT+TGG | 0.571612 | 2_2:-27845998 | None:intergenic |
| AAGGTGTTCATTAATCGAGC+CGG | 0.572295 | 2_2:-27845333 | None:intergenic |
| AGCCATGACATGGACTCAGC+TGG | 0.572954 | 2_2:-27845711 | None:intergenic |
| AATTAGGAGGAAATGAAGGC+TGG | 0.580229 | 2_2:-27845235 | None:intergenic |
| TGAGCAAATCCATAGTGGTA+AGG | 0.587093 | 2_2:-27844487 | None:intergenic |
| TTAATAATGCTATCTAGTCA+AGG | 0.590291 | 2_2:-27845884 | None:intergenic |
| ATCATCCCTAGTACCGGCAC+CGG | 0.591088 | 2_2:+27845308 | Msa0246540:CDS |
| CCGCAAAGATTAGGTCTGGA+AGG | 0.596635 | 2_2:-27845362 | None:intergenic |
| GTGAACATCATCCCTAGTAC+CGG | 0.597355 | 2_2:+27845302 | Msa0246540:CDS |
| TGGAGTGAGCAAATCCATAG+TGG | 0.611439 | 2_2:-27844492 | None:intergenic |
| TTCTGGAGAAGAGAAAGGAT+AGG | 0.619484 | 2_2:+27845510 | Msa0246540:CDS |
| GAAGTTCTGACCAAATTAGG+AGG | 0.621959 | 2_2:-27845248 | None:intergenic |
| ATGATTTGCAGTGCTATCAA+GGG | 0.622638 | 2_2:+27845062 | Msa0246540:intron |
| AGTTTCCGGCAACAAACCAC+CGG | 0.625545 | 2_2:+27843675 | Msa0246540:CDS |
| ATTAAGGTTCCGTACCAGAA+GGG | 0.632538 | 2_2:-27843810 | None:intergenic |
| CTAGGGATGATGTTCACAGT+AGG | 0.634680 | 2_2:-27845296 | None:intergenic |
| AGCCAGCTGAGTCCATGTCA+TGG | 0.640187 | 2_2:+27845709 | Msa0246540:CDS |
| CACAGTAGGAACGATTGGAG+CGG | 0.672313 | 2_2:-27845282 | None:intergenic |
| AACTTCTGAATATTCCGATG+AGG | 0.677602 | 2_2:-27843656 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTATTTTTTAAAATT+TGG | + | chr2_2:27843921-27843940 | Msa0246540:intron | 0.0% |
| !! | TACAATTGAATAATTTAAAA+TGG | - | chr2_2:27844130-27844149 | None:intergenic | 10.0% |
| !!! | ATTGTTATTATATACTAATT+AGG | + | chr2_2:27844261-27844280 | Msa0246540:intron | 10.0% |
| !!! | AATTTGTATTTTTTTTTTGT+AGG | + | chr2_2:27844386-27844405 | Msa0246540:intron | 10.0% |
| !!! | ATTTGTATTTTTTTTTTGTA+GGG | + | chr2_2:27844387-27844406 | Msa0246540:intron | 10.0% |
| !! | AGTTAAAAAAATAAATTTGA+TGG | + | chr2_2:27844742-27844761 | Msa0246540:intron | 10.0% |
| !! | AAAAATTAATAATCAACTAA+TGG | - | chr2_2:27845004-27845023 | None:intergenic | 10.0% |
| !! | TTTATTGAGTCAATATATTA+AGG | + | chr2_2:27843738-27843757 | Msa0246540:CDS | 15.0% |
| !!! | AACTTTTGAAATTTTTTTGT+GGG | + | chr2_2:27843891-27843910 | Msa0246540:intron | 15.0% |
| !!! | TTTAAAATTTGGTATCTTAA+TGG | + | chr2_2:27843932-27843951 | Msa0246540:intron | 15.0% |
| !!! | TTTTTTTTTCCTTTTTTGTA+AGG | + | chr2_2:27844073-27844092 | Msa0246540:intron | 15.0% |
| !! | CAAAAAAAAAATAAACAACA+TGG | - | chr2_2:27844176-27844195 | None:intergenic | 15.0% |
| !!! | ATTTTTTTACAAACCTAATT+TGG | - | chr2_2:27844588-27844607 | None:intergenic | 15.0% |
| !! | ATAAGATGAATAAAATTCAA+TGG | - | chr2_2:27846096-27846115 | None:intergenic | 15.0% |
| !! | AGTCAATATATTAAGGAAAA+GGG | + | chr2_2:27843745-27843764 | Msa0246540:CDS | 20.0% |
| !!! | AATTTTTCGTTTTTTGTTTC+TGG | + | chr2_2:27843840-27843859 | Msa0246540:intron | 20.0% |
| !!! | ATTTTTCGTTTTTTGTTTCT+GGG | + | chr2_2:27843841-27843860 | Msa0246540:intron | 20.0% |
| !!! | CAACTTTTGAAATTTTTTTG+TGG | + | chr2_2:27843890-27843909 | Msa0246540:intron | 20.0% |
| !! | ATTTCATTTCATACCAAATT+AGG | + | chr2_2:27844572-27844591 | Msa0246540:intron | 20.0% |
| !! | AAAAAATAAATTTGATGGAG+AGG | + | chr2_2:27844747-27844766 | Msa0246540:intron | 20.0% |
| !!! | CAATTGACAATGTTTTATAA+CGG | + | chr2_2:27845098-27845117 | Msa0246540:CDS | 20.0% |
| !!! | CTTGTAAATGAACTATTTTT+TGG | + | chr2_2:27845557-27845576 | Msa0246540:intron | 20.0% |
| !! | AAACTTTGTCTAAAAAATTC+CGG | - | chr2_2:27845851-27845870 | None:intergenic | 20.0% |
| !!! | AATTTTTTAGACAAAGTTTC+TGG | + | chr2_2:27845852-27845871 | Msa0246540:three_prime_UTR | 20.0% |
| !! | GTTAAGATCTAATATGTTAT+GGG | + | chr2_2:27845940-27845959 | Msa0246540:three_prime_UTR | 20.0% |
| !! | TAAAAAACCTATGTATGATA+AGG | - | chr2_2:27846009-27846028 | None:intergenic | 20.0% |
| ! | GAGTCAATATATTAAGGAAA+AGG | + | chr2_2:27843744-27843763 | Msa0246540:CDS | 25.0% |
| ! | CGAAAAATTCGAAGAAATTA+AGG | - | chr2_2:27843829-27843848 | None:intergenic | 25.0% |
| ! | ATTATTCCTTTCTTCTTAGT+TGG | + | chr2_2:27843958-27843977 | Msa0246540:intron | 25.0% |
| ! | ATTCTAGTACTTAAGAGTAA+CGG | + | chr2_2:27843995-27844014 | Msa0246540:intron | 25.0% |
| ! | ATAGTTCAACCTTACAAAAA+AGG | - | chr2_2:27844085-27844104 | None:intergenic | 25.0% |
| ! | AATTTATGAGTGATGACAAA+TGG | + | chr2_2:27844609-27844628 | Msa0246540:intron | 25.0% |
| !!! | TTAGTCAGATTTATTTTTGC+CGG | + | chr2_2:27845829-27845848 | Msa0246540:three_prime_UTR | 25.0% |
| ! | TTAATAATGCTATCTAGTCA+AGG | - | chr2_2:27845887-27845906 | None:intergenic | 25.0% |
| !!! | TTTTTCTTGTTTAATGCACA+TGG | + | chr2_2:27845918-27845937 | Msa0246540:three_prime_UTR | 25.0% |
| ! | GGTTAAGATCTAATATGTTA+TGG | + | chr2_2:27845939-27845958 | Msa0246540:three_prime_UTR | 25.0% |
| !!! | ATATGTTATGGGTTTTTTGT+TGG | + | chr2_2:27845951-27845970 | Msa0246540:three_prime_UTR | 25.0% |
| !!! | GATTCTTTGTGTTGTTGTTT+TGG | - | chr2_2:27843549-27843568 | None:intergenic | 30.0% |
| TATGAACCAACTAAGAAGAA+AGG | - | chr2_2:27843967-27843986 | None:intergenic | 30.0% | |
| ! | TTGTGTCAAATTGTTTTCCA+TGG | - | chr2_2:27844462-27844481 | None:intergenic | 30.0% |
| CAAAATGAAGAAAACTCACT+TGG | - | chr2_2:27844537-27844556 | None:intergenic | 30.0% | |
| !! | TTTTTAACTAGTTCCACCTA+GGG | - | chr2_2:27844731-27844750 | None:intergenic | 30.0% |
| !!! | TTTTTTAACTAGTTCCACCT+AGG | - | chr2_2:27844732-27844751 | None:intergenic | 30.0% |
| TGCTATCAATCATTACTAAG+CGG | - | chr2_2:27844927-27844946 | None:intergenic | 30.0% | |
| AAGAAATTACCGCAAAGATT+AGG | - | chr2_2:27845374-27845393 | None:intergenic | 30.0% | |
| AACCATTGACACGTAAAATT+CGG | + | chr2_2:27845396-27845415 | Msa0246540:intron | 30.0% | |
| ! | ATTAACTTGATATGGTGCAT+TGG | - | chr2_2:27845688-27845707 | None:intergenic | 30.0% |
| GCCAAAGTATGACAAATAAA+GGG | - | chr2_2:27845977-27845996 | None:intergenic | 30.0% | |
| AGCCAAAGTATGACAAATAA+AGG | - | chr2_2:27845978-27845997 | None:intergenic | 30.0% | |
| GTTCAAAAGTTGTTAATCGT+TGG | + | chr2_2:27846158-27846177 | Msa0246540:three_prime_UTR | 30.0% | |
| !!! | CTTTGTGTTGTTGTTTTGGA+TGG | - | chr2_2:27843545-27843564 | None:intergenic | 35.0% |
| TTCAACTATGTCTACCTCAT+CGG | + | chr2_2:27843642-27843661 | Msa0246540:exon | 35.0% | |
| AACTTCTGAATATTCCGATG+AGG | - | chr2_2:27843659-27843678 | None:intergenic | 35.0% | |
| TCGGAATATTCAGAAGTTTC+CGG | + | chr2_2:27843661-27843680 | Msa0246540:CDS | 35.0% | |
| !! | TGAGAGAAAGTTGTTTTCTC+CGG | - | chr2_2:27843709-27843728 | None:intergenic | 35.0% |
| TGCTTCAAAGATCTTTCTCT+TGG | + | chr2_2:27843769-27843788 | Msa0246540:CDS | 35.0% | |
| ! | GTCAAATTGTTTTCCATGGT+TGG | - | chr2_2:27844458-27844477 | None:intergenic | 35.0% |
| ACAAAAGAACCTTACCACTA+TGG | + | chr2_2:27844478-27844497 | Msa0246540:CDS | 35.0% | |
| ! | TTCGTGGAAATAACTTGTAG+AGG | + | chr2_2:27844692-27844711 | Msa0246540:intron | 35.0% |
| ATTTCACTCGCTAAATGCAA+CGG | + | chr2_2:27844843-27844862 | Msa0246540:intron | 35.0% | |
| TATCCTCTACAATTGCAGTA+TGG | - | chr2_2:27844886-27844905 | None:intergenic | 35.0% | |
| ! | AATGATTTGCAGTGCTATCA+AGG | + | chr2_2:27845061-27845080 | Msa0246540:intron | 35.0% |
| ! | ATGATTTGCAGTGCTATCAA+GGG | + | chr2_2:27845062-27845081 | Msa0246540:intron | 35.0% |
| ATTGTCAATTGTGCAGCTTT+AGG | - | chr2_2:27845089-27845108 | None:intergenic | 35.0% | |
| ACCAAATTAGGAGGAAATGA+AGG | - | chr2_2:27845242-27845261 | None:intergenic | 35.0% | |
| TCCTAATTTGGTCAGAACTT+CGG | + | chr2_2:27845250-27845269 | Msa0246540:CDS | 35.0% | |
| ! | ATCCGAATTTTACGTGTCAA+TGG | - | chr2_2:27845401-27845420 | None:intergenic | 35.0% |
| ATTCGGATGACACGAAAAAT+TGG | + | chr2_2:27845413-27845432 | Msa0246540:intron | 35.0% | |
| ATTGGCAGATCTGCAAATAA+AGG | - | chr2_2:27845464-27845483 | None:intergenic | 35.0% | |
| ! | GCTGGCTTATTAACTTGATA+TGG | - | chr2_2:27845696-27845715 | None:intergenic | 35.0% |
| ! | GCCCTTTATTTGTCATACTT+TGG | + | chr2_2:27845973-27845992 | Msa0246540:three_prime_UTR | 35.0% |
| CAATGGCAAAAAATACAGAG+AGG | - | chr2_2:27846064-27846083 | None:intergenic | 35.0% | |
| !!! | CTCTCTGTATTTTTTGCCAT+TGG | + | chr2_2:27846062-27846081 | Msa0246540:three_prime_UTR | 35.0% |
| !!! | GTATTTTTTGCCATTGGTAC+TGG | + | chr2_2:27846068-27846087 | Msa0246540:three_prime_UTR | 35.0% |
| CTCTTGTTGAATCTGTTCAT+TGG | + | chr2_2:27846183-27846202 | Msa0246540:three_prime_UTR | 35.0% | |
| ATTAAGGTTCCGTACCAGAA+GGG | - | chr2_2:27843813-27843832 | None:intergenic | 40.0% | |
| AATTAAGGTTCCGTACCAGA+AGG | - | chr2_2:27843814-27843833 | None:intergenic | 40.0% | |
| CATGGTTGGAAACAAGTTCA+TGG | - | chr2_2:27844444-27844463 | None:intergenic | 40.0% | |
| ! | CATGAACTTGTTTCCAACCA+TGG | + | chr2_2:27844442-27844461 | Msa0246540:CDS | 40.0% |
| TGAGCAAATCCATAGTGGTA+AGG | - | chr2_2:27844490-27844509 | None:intergenic | 40.0% | |
| GAATTGTTCAAAGCAGCTTG+TGG | - | chr2_2:27844515-27844534 | None:intergenic | 40.0% | |
| TTTCCACGAATTGACCCTTT+CGG | - | chr2_2:27844682-27844701 | None:intergenic | 40.0% | |
| ATCAATCATTACTAAGCGGC+TGG | - | chr2_2:27844923-27844942 | None:intergenic | 40.0% | |
| CATGAGCTCATGTGCTTTAT+CGG | - | chr2_2:27845153-27845172 | None:intergenic | 40.0% | |
| ! | CTCATGGCTTTTGCTAACAA+AGG | + | chr2_2:27845167-27845186 | Msa0246540:CDS | 40.0% |
| AATTAGGAGGAAATGAAGGC+TGG | - | chr2_2:27845238-27845257 | None:intergenic | 40.0% | |
| GCCTTCATTTCCTCCTAATT+TGG | + | chr2_2:27845238-27845257 | Msa0246540:CDS | 40.0% | |
| ! | GAAGTTCTGACCAAATTAGG+AGG | - | chr2_2:27845251-27845270 | None:intergenic | 40.0% |
| ! | ACCGAAGTTCTGACCAAATT+AGG | - | chr2_2:27845254-27845273 | None:intergenic | 40.0% |
| ATGTTCACAGTAGGAACGAT+TGG | - | chr2_2:27845290-27845309 | None:intergenic | 40.0% | |
| ! | AAGGTGTTCATTAATCGAGC+CGG | - | chr2_2:27845336-27845355 | None:intergenic | 40.0% |
| ATTACCGCAAAGATTAGGTC+TGG | - | chr2_2:27845369-27845388 | None:intergenic | 40.0% | |
| TTGCAGATCTGCCAATTATG+AGG | + | chr2_2:27845468-27845487 | Msa0246540:intron | 40.0% | |
| AGCGAAGCTTTCCTCATAAT+TGG | - | chr2_2:27845482-27845501 | None:intergenic | 40.0% | |
| ! | TTCTGGAGAAGAGAAAGGAT+AGG | + | chr2_2:27845510-27845529 | Msa0246540:CDS | 40.0% |
| ! | TTGTCATACTTTGGCTCCAA+TGG | + | chr2_2:27845982-27846001 | Msa0246540:three_prime_UTR | 40.0% |
| ! | TGTCATACTTTGGCTCCAAT+GGG | + | chr2_2:27845983-27846002 | Msa0246540:three_prime_UTR | 40.0% |
| CTATGTATGATAAGGCCCAT+TGG | - | chr2_2:27846001-27846020 | None:intergenic | 40.0% | |
| ! | CAATGGGCCTTATCATACAT+AGG | + | chr2_2:27845999-27846018 | Msa0246540:three_prime_UTR | 40.0% |
| TTCAATGGTACCAGTACCAA+TGG | - | chr2_2:27846081-27846100 | None:intergenic | 40.0% | |
| !! | GAGACTTTGAAGTGTGTTTC+TGG | + | chr2_2:27846209-27846228 | Msa0246540:three_prime_UTR | 40.0% |
| TGGAGTGAGCAAATCCATAG+TGG | - | chr2_2:27844495-27844514 | None:intergenic | 45.0% | |
| AGGATTTAGATCCTCTCCCT+AGG | + | chr2_2:27844712-27844731 | Msa0246540:intron | 45.0% | |
| ATTTAGATCCTCTCCCTAGG+TGG | + | chr2_2:27844715-27844734 | Msa0246540:intron | 45.0% | |
| TGACACACCTAGATCCTCTA+CGG | + | chr2_2:27844771-27844790 | Msa0246540:intron | 45.0% | |
| ACCTAGATCCTCTACGGATA+CGG | + | chr2_2:27844777-27844796 | Msa0246540:intron | 45.0% | |
| GCACCATACTGCAATTGTAG+AGG | + | chr2_2:27844880-27844899 | Msa0246540:intron | 45.0% | |
| CGATAAAGCACATGAGCTCA+TGG | + | chr2_2:27845151-27845170 | Msa0246540:CDS | 45.0% | |
| CTAGGGATGATGTTCACAGT+AGG | - | chr2_2:27845299-27845318 | None:intergenic | 45.0% | |
| GTGAACATCATCCCTAGTAC+CGG | + | chr2_2:27845302-27845321 | Msa0246540:CDS | 45.0% | |
| CCTTCCAGACCTAATCTTTG+CGG | + | chr2_2:27845362-27845381 | Msa0246540:CDS | 45.0% | |
| TGAGGAAAGCTTCGCTTCAT+CGG | + | chr2_2:27845486-27845505 | Msa0246540:CDS | 45.0% | |
| ! | TCGGTTTCTGGAGAAGAGAA+AGG | + | chr2_2:27845505-27845524 | Msa0246540:CDS | 45.0% |
| GGAGAAGAGAAAGGATAGGT+AGG | + | chr2_2:27845514-27845533 | Msa0246540:intron | 45.0% | |
| AGTTTCCGGCAACAAACCAC+CGG | + | chr2_2:27843675-27843694 | Msa0246540:CDS | 50.0% | |
| ACATGCAACACAGACCCTTC+TGG | + | chr2_2:27843796-27843815 | Msa0246540:CDS | 50.0% | |
| CAACACAGACCCTTCTGGTA+CGG | + | chr2_2:27843801-27843820 | Msa0246540:intron | 50.0% | |
| ACGAATTGACCCTTTCGGCA+AGG | - | chr2_2:27844677-27844696 | None:intergenic | 50.0% | |
| TTGCCGAAAGGGTCAATTCG+TGG | + | chr2_2:27844676-27844695 | Msa0246540:intron | 50.0% | |
| AACTAGTTCCACCTAGGGAG+AGG | - | chr2_2:27844726-27844745 | None:intergenic | 50.0% | |
| ACCGTATCCGTAGAGGATCT+AGG | - | chr2_2:27844781-27844800 | None:intergenic | 50.0% | |
| GATCCTCTACGGATACGGTA+TGG | + | chr2_2:27844782-27844801 | Msa0246540:intron | 50.0% | |
| ! | TCATTACTAAGCGGCTGGCT+CGG | - | chr2_2:27844918-27844937 | None:intergenic | 50.0% |
| AGCTCATGTGCTTTATCGGC+AGG | - | chr2_2:27845149-27845168 | None:intergenic | 50.0% | |
| CACAGTAGGAACGATTGGAG+CGG | - | chr2_2:27845285-27845304 | None:intergenic | 50.0% | |
| TTCATTAATCGAGCCGGTGC+CGG | - | chr2_2:27845330-27845349 | None:intergenic | 50.0% | |
| !! | TAGGTCTGGAAGGCACTTGA+AGG | - | chr2_2:27845355-27845374 | None:intergenic | 50.0% |
| CCGCAAAGATTAGGTCTGGA+AGG | - | chr2_2:27845365-27845384 | None:intergenic | 50.0% | |
| !! | AGCTTCGCTTCATCGGTTTC+TGG | + | chr2_2:27845493-27845512 | Msa0246540:CDS | 50.0% |
| TGAGTCCATGTCATGGCTTG+TGG | + | chr2_2:27845716-27845735 | Msa0246540:CDS | 50.0% | |
| ! | GAGTCCATGTCATGGCTTGT+GGG | + | chr2_2:27845717-27845736 | Msa0246540:CDS | 50.0% |
| ! | GTTTTCTCCGGTGACTTCGC+CGG | - | chr2_2:27843697-27843716 | None:intergenic | 55.0% |
| TATCGTCACGCTAGCCGCTA+AGG | - | chr2_2:27844645-27844664 | None:intergenic | 55.0% | |
| ATAGCTGTCGCCTTGCCGAA+AGG | + | chr2_2:27844664-27844683 | Msa0246540:intron | 55.0% | |
| TAGCTGTCGCCTTGCCGAAA+GGG | + | chr2_2:27844665-27844684 | Msa0246540:intron | 55.0% | |
| GCACCATACCGTATCCGTAG+AGG | - | chr2_2:27844788-27844807 | None:intergenic | 55.0% | |
| !! | ATCATCCCTAGTACCGGCAC+CGG | + | chr2_2:27845308-27845327 | Msa0246540:CDS | 55.0% |
| AGCCAGCTGAGTCCATGTCA+TGG | + | chr2_2:27845709-27845728 | Msa0246540:CDS | 55.0% | |
| AGCCATGACATGGACTCAGC+TGG | - | chr2_2:27845714-27845733 | None:intergenic | 55.0% | |
| TGCACCCACAAGCCATGACA+TGG | - | chr2_2:27845724-27845743 | None:intergenic | 55.0% | |
| !! | CTTCGCCGGTGGTTTGTTGC+CGG | - | chr2_2:27843683-27843702 | None:intergenic | 60.0% |
| CAAACCACCGGCGAAGTCAC+CGG | + | chr2_2:27843687-27843706 | Msa0246540:CDS | 60.0% | |
| ATGGCGAGTGCGAGCCTTAG+CGG | + | chr2_2:27844628-27844647 | Msa0246540:intron | 60.0% | |
| TTCTCCGGTGACTTCGCCGG+TGG | - | chr2_2:27843694-27843713 | None:intergenic | 65.0% | |
| !! | CGGTGCCGGTGCCGGTACTA+GGG | - | chr2_2:27845316-27845335 | None:intergenic | 70.0% |
| !! | CCTAGTACCGGCACCGGCAC+CGG | + | chr2_2:27845314-27845333 | Msa0246540:CDS | 70.0% |
| !! | AATCGAGCCGGTGCCGGTGC+CGG | - | chr2_2:27845324-27845343 | None:intergenic | 70.0% |
| !! | CCGGTGCCGGTGCCGGTACT+AGG | - | chr2_2:27845317-27845336 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 27843525 | 27846232 | 27843525 | ID=Msa0246540;Name=Msa0246540 |
| chr2_2 | mRNA | 27843525 | 27846232 | 27843525 | ID=Msa0246540-mRNA-1;Parent=Msa0246540;Name=Msa0246540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=124|1|1|1|1|1|5|471|250 |
| chr2_2 | exon | 27843525 | 27843817 | 27843525 | ID=Msa0246540-mRNA-1:exon:10090;Parent=Msa0246540-mRNA-1 |
| chr2_2 | exon | 27844408 | 27844537 | 27844408 | ID=Msa0246540-mRNA-1:exon:10091;Parent=Msa0246540-mRNA-1 |
| chr2_2 | exon | 27845073 | 27845383 | 27845073 | ID=Msa0246540-mRNA-1:exon:10092;Parent=Msa0246540-mRNA-1 |
| chr2_2 | exon | 27845474 | 27845531 | 27845474 | ID=Msa0246540-mRNA-1:exon:10093;Parent=Msa0246540-mRNA-1 |
| chr2_2 | exon | 27845677 | 27846232 | 27845677 | ID=Msa0246540-mRNA-1:exon:10094;Parent=Msa0246540-mRNA-1 |
| chr2_2 | five_prime_UTR | 27843525 | 27843648 | 27843525 | ID=Msa0246540-mRNA-1:five_prime_utr;Parent=Msa0246540-mRNA-1 |
| chr2_2 | CDS | 27843649 | 27843817 | 27843649 | ID=Msa0246540-mRNA-1:cds;Parent=Msa0246540-mRNA-1 |
| chr2_2 | CDS | 27844408 | 27844537 | 27844408 | ID=Msa0246540-mRNA-1:cds;Parent=Msa0246540-mRNA-1 |
| chr2_2 | CDS | 27845073 | 27845383 | 27845073 | ID=Msa0246540-mRNA-1:cds;Parent=Msa0246540-mRNA-1 |
| chr2_2 | CDS | 27845474 | 27845531 | 27845474 | ID=Msa0246540-mRNA-1:cds;Parent=Msa0246540-mRNA-1 |
| chr2_2 | CDS | 27845677 | 27845761 | 27845677 | ID=Msa0246540-mRNA-1:cds;Parent=Msa0246540-mRNA-1 |
| chr2_2 | three_prime_UTR | 27845762 | 27846232 | 27845762 | ID=Msa0246540-mRNA-1:three_prime_utr;Parent=Msa0246540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
