AlfalfaGEDB | Msa0323880

M. sativa cultivar zhongmu-4 / Msa0323880

KEGG: K13464
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0323880	XP_003595354.1	96.047	253	7	1	1	250	1	253	2.96e-177	497

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0323880	sp\|Q9S7M2\|TI10B_ARATH	37.143	280	101	9	2	242	3	246	4.12e-42	147

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0323880	TF	Tify

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0101240	Msa0323880	0.805010	1.640427e-49	-8.615850e-47
Msa0203400	Msa0323880	0.935140	1.352673e-96	-8.615850e-47
Msa0246540	Msa0323880	0.956338	3.728939e-114	-8.615850e-47
Msa0259440	Msa0323880	0.800265	1.563256e-48	-8.615850e-47
Msa0284240	Msa0323880	0.801412	9.116648e-49	-8.615850e-47
Msa0323880	Msa0689650	0.816429	5.555378e-52	-8.615850e-47
Msa0323880	Msa0799620	0.829428	5.176545e-55	-8.615850e-47
Msa0323880	Msa0860250	0.816500	5.357023e-52	-8.615850e-47
Msa0323880	Msa1276810	0.821588	3.727237e-53	-8.615850e-47
Msa0323880	Msa1303870	0.809394	1.933960e-50	-8.615850e-47

Showing 1 to 10 of 13 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0323880	MtrunA17_Chr2g0301131	96.047	253	7	1	1	250	1	253	0.0	497
Msa0323880	MtrunA17_Chr4g0070271	44.961	258	77	10	1	248	1	203	1.69e-48	159
Msa0323880	MtrunA17_Chr5g0399851	45.513	156	47	6	99	242	10	139	5.48e-35	122
Msa0323880	MtrunA17_Chr5g0399881	44.512	164	43	5	96	242	25	157	1.04e-33	120
Msa0323880	MtrunA17_Chr5g0399861	42.162	185	58	7	76	242	3	156	1.82e-33	119
Msa0323880	MtrunA17_Chr8g0344481	32.018	228	121	6	12	233	11	210	8.85e-23	93.2
Msa0323880	MtrunA17_Chr4g0070241	55.882	68	24	3	69	136	1	62	3.22e-15	68.9
Msa0323880	MtrunA17_Chr2g0302041	32.031	128	62	5	109	230	58	166	1.60e-13	67.4
Msa0323880	MtrunA17_Chr1g0161031	30.460	174	67	4	107	237	172	334	6.16e-12	64.7
Msa0323880	MtrunA17_Chr4g0069721	29.771	131	69	4	105	230	41	153	5.07e-11	60.1

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0323880	AT1G74950.1	37.143	280	101	9	2	242	3	246	4.19e-43	147
Msa0323880	AT1G19180.1	36.667	270	120	8	1	242	1	247	5.06e-40	139
Msa0323880	AT1G19180.3	36.667	270	120	8	1	242	1	247	5.06e-40	139
Msa0323880	AT1G74950.2	36.863	255	92	8	2	223	3	221	9.86e-37	129
Msa0323880	AT1G72450.1	32.911	237	113	10	17	234	4	213	9.20e-27	104
Msa0323880	AT1G17380.1	30.677	251	129	7	1	241	1	216	1.48e-24	99.0
Msa0323880	AT1G19180.2	39.041	146	59	4	106	242	57	181	1.62e-22	91.7
Msa0323880	AT1G17380.3	29.954	217	114	6	17	223	10	198	5.39e-19	83.2
Msa0323880	AT1G17380.2	34.507	142	59	5	105	236	65	182	4.12e-14	70.1
Msa0323880	AT5G20900.1	31.746	126	63	3	109	230	57	163	5.83e-12	63.2

Showing 1 to 10 of 14 entries

Previous1 2Next

Find 76 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCTCAAGCCAATGAAC+AGG	0.492608	2_4:-28604437	None:intergenic
AACTTCTGAATATTCCGATG+AGG	0.677602	2_4:-28601894	None:intergenic
AAGAAATTACCGCAAAGATT+AGG	0.403918	2_4:-28603599	None:intergenic
AAGGTGTTCATTAATCGAGC+CGG	0.572295	2_4:-28603561	None:intergenic
AATCGAGCCGGTGCCGGTGC+CGG	0.469663	2_4:-28603549	None:intergenic
AATGATTTGCAGTGCTATCA+AGG	0.444008	2_4:+28603289	Msa0323880:intron
AATTAGGAGGAAATGAAGGC+TGG	0.580229	2_4:-28603463	None:intergenic
ACAAAAGAACCTTACAACTA+TGG	0.341905	2_4:+28602707	Msa0323880:CDS
ACATGCAACACAGACCCTTC+TGG	0.507485	2_4:+28602034	Msa0323880:CDS
ACCAAATTAGGAGGAAATGA+AGG	0.565826	2_4:-28603467	None:intergenic

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CGAAAAATTCGGAGAAATTA+AGG	-	chr2_4:28602067-28602086	None:intergenic	30.0%
TATGAACCAACTAACAAGAA+AGG	-	chr2_4:28602196-28602215	None:intergenic	30.0%
ACAAAAGAACCTTACAACTA+TGG	+	chr2_4:28602707-28602726	Msa0323880:CDS	30.0%
CAAAATGAAGAAAACTCACT+TGG	-	chr2_4:28602766-28602785	None:intergenic	30.0%
TGCTATTAGTCATTACTAAG+CGG	-	chr2_4:28603156-28603175	None:intergenic	30.0%
AAGAAATTACCGCAAAGATT+AGG	-	chr2_4:28603602-28603621	None:intergenic	30.0%
AACCATTGACACGTAAAATT+CGG	+	chr2_4:28603624-28603643	Msa0323880:intron	30.0%
GCCAAAGTATGACAAATAAA+GGG	-	chr2_4:28604220-28604239	None:intergenic	30.0%
AGCCAAAGTATGACAAATAA+AGG	-	chr2_4:28604221-28604240	None:intergenic	30.0%
GTTCAAAAGTTGTTAATCGT+TGG	+	chr2_4:28604401-28604420	Msa0323880:three_prime_UTR	30.0%

Showing 1 to 10 of 150 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	28601767	28604475	28601767	ID=Msa0323880;Name=Msa0323880
chr2_4	mRNA	28601767	28604475	28601767	ID=Msa0323880-mRNA-1;Parent=Msa0323880;Name=Msa0323880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=120\|1\|1\|1\|1\|1\|5\|471\|250
chr2_4	exon	28601767	28602055	28601767	ID=Msa0323880-mRNA-1:exon:9799;Parent=Msa0323880-mRNA-1
chr2_4	exon	28602637	28602766	28602637	ID=Msa0323880-mRNA-1:exon:9800;Parent=Msa0323880-mRNA-1
chr2_4	exon	28603301	28603611	28603301	ID=Msa0323880-mRNA-1:exon:9801;Parent=Msa0323880-mRNA-1
chr2_4	exon	28603702	28603759	28603702	ID=Msa0323880-mRNA-1:exon:9802;Parent=Msa0323880-mRNA-1
chr2_4	exon	28603920	28604475	28603920	ID=Msa0323880-mRNA-1:exon:9803;Parent=Msa0323880-mRNA-1
chr2_4	five_prime_UTR	28601767	28601886	28601767	ID=Msa0323880-mRNA-1:five_prime_utr;Parent=Msa0323880-mRNA-1
chr2_4	CDS	28601887	28602055	28601887	ID=Msa0323880-mRNA-1:cds;Parent=Msa0323880-mRNA-1
chr2_4	CDS	28602637	28602766	28602637	ID=Msa0323880-mRNA-1:cds;Parent=Msa0323880-mRNA-1
chr2_4	CDS	28603301	28603611	28603301	ID=Msa0323880-mRNA-1:cds;Parent=Msa0323880-mRNA-1
chr2_4	CDS	28603702	28603759	28603702	ID=Msa0323880-mRNA-1:cds;Parent=Msa0323880-mRNA-1
chr2_4	CDS	28603920	28604004	28603920	ID=Msa0323880-mRNA-1:cds;Parent=Msa0323880-mRNA-1
chr2_4	three_prime_UTR	28604005	28604475	28604005	ID=Msa0323880-mRNA-1:three_prime_utr;Parent=Msa0323880-mRNA-1

Gene Sequence

>Msa0323880

ATGTCTACCTCATCGGAATATTCAGAAGTTTCCGGCAACAAACCACCGGCGAAGTCACCGGAGAAAACAACTTTCTCTCAAACATGTAGTTTATTGAGTCAATATATTAAGGAAAAGGGTTGCTTCAAAGATCTTTCTCTTGGTATCACATGCAACACAGACCCTTCTGGGTCTTCTGAGACTTCTTCTCTATCTGCAACAACCATGAACTTGTTTCCAACCATGGAAAACAATTTGACACAAAAGAACCTTACAACTATGGATTTGCTCACTCCACAAGCTGCTTTGAACAATTCCAATGCTATCAAGGGACCTAAAGCTGCACAATTGACAATGTTTTATAACGGTCAAGTTATTGTATTCGATGATTTTCCTGCCGATAAAGCACATGAGCTCATGGCTTTTGCTAACAAAGGAATCTCTCAAAGTCAGAACAATTCTGTGTACACTTACACACAGAGCCAGCCTTCATTTCCTCCTAATTTGGTCAGAACTTCGGTTAACACAACCGCTCCAATCGTTCCTACTGTGAACATCATCCCTAGTACCGGCACCGGCACCGGCTCGATTAATGAACACCTTCAAGTGCCTTCCAGACCTAATCTTTGCGATCTGCCAATTATGAGGAAAGCTTCGCTTCATCGGTTTCTGGAGAAGAGAAAGGATAGAATTGCTGCCAATGCACCATATCAAGTTAATAAGCCAGCTGAGTCCATGTCATGGCTTGTGGGTGCAAAATCAACTCAAATTTGA

Protein sequence

>Msa0323880

MSTSSEYSEVSGNKPPAKSPEKTTFSQTCSLLSQYIKEKGCFKDLSLGITCNTDPSGSSETSSLSATTMNLFPTMENNLTQKNLTTMDLLTPQAALNNSNAIKGPKAAQLTMFYNGQVIVFDDFPADKAHELMAFANKGISQSQNNSVYTYTQSQPSFPPNLVRTSVNTTAPIVPTVNIIPSTGTGTGSINEHLQVPSRPNLCDLPIMRKASLHRFLEKRKDRIAANAPYQVNKPAESMSWLVGAKSTQI*