Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323880 | XP_003595354.1 | 96.047 | 253 | 7 | 1 | 1 | 250 | 1 | 253 | 2.96e-177 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323880 | sp|Q9S7M2|TI10B_ARATH | 37.143 | 280 | 101 | 9 | 2 | 242 | 3 | 246 | 4.12e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0323880 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101240 | Msa0323880 | 0.805010 | 1.640427e-49 | -8.615850e-47 |
| Msa0203400 | Msa0323880 | 0.935140 | 1.352673e-96 | -8.615850e-47 |
| Msa0246540 | Msa0323880 | 0.956338 | 3.728939e-114 | -8.615850e-47 |
| Msa0259440 | Msa0323880 | 0.800265 | 1.563256e-48 | -8.615850e-47 |
| Msa0284240 | Msa0323880 | 0.801412 | 9.116648e-49 | -8.615850e-47 |
| Msa0323880 | Msa0689650 | 0.816429 | 5.555378e-52 | -8.615850e-47 |
| Msa0323880 | Msa0799620 | 0.829428 | 5.176545e-55 | -8.615850e-47 |
| Msa0323880 | Msa0860250 | 0.816500 | 5.357023e-52 | -8.615850e-47 |
| Msa0323880 | Msa1276810 | 0.821588 | 3.727237e-53 | -8.615850e-47 |
| Msa0323880 | Msa1303870 | 0.809394 | 1.933960e-50 | -8.615850e-47 |
| Msa0323880 | Msa1360420 | 0.808958 | 2.397894e-50 | -8.615850e-47 |
| Msa0323880 | Msa1363020 | 0.807530 | 4.832039e-50 | -8.615850e-47 |
| Msa0323880 | Msa1416010 | 0.843537 | 1.318170e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323880 | MtrunA17_Chr2g0301131 | 96.047 | 253 | 7 | 1 | 1 | 250 | 1 | 253 | 0.0 | 497 |
| Msa0323880 | MtrunA17_Chr4g0070271 | 44.961 | 258 | 77 | 10 | 1 | 248 | 1 | 203 | 1.69e-48 | 159 |
| Msa0323880 | MtrunA17_Chr5g0399851 | 45.513 | 156 | 47 | 6 | 99 | 242 | 10 | 139 | 5.48e-35 | 122 |
| Msa0323880 | MtrunA17_Chr5g0399881 | 44.512 | 164 | 43 | 5 | 96 | 242 | 25 | 157 | 1.04e-33 | 120 |
| Msa0323880 | MtrunA17_Chr5g0399861 | 42.162 | 185 | 58 | 7 | 76 | 242 | 3 | 156 | 1.82e-33 | 119 |
| Msa0323880 | MtrunA17_Chr8g0344481 | 32.018 | 228 | 121 | 6 | 12 | 233 | 11 | 210 | 8.85e-23 | 93.2 |
| Msa0323880 | MtrunA17_Chr4g0070241 | 55.882 | 68 | 24 | 3 | 69 | 136 | 1 | 62 | 3.22e-15 | 68.9 |
| Msa0323880 | MtrunA17_Chr2g0302041 | 32.031 | 128 | 62 | 5 | 109 | 230 | 58 | 166 | 1.60e-13 | 67.4 |
| Msa0323880 | MtrunA17_Chr1g0161031 | 30.460 | 174 | 67 | 4 | 107 | 237 | 172 | 334 | 6.16e-12 | 64.7 |
| Msa0323880 | MtrunA17_Chr4g0069721 | 29.771 | 131 | 69 | 4 | 105 | 230 | 41 | 153 | 5.07e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323880 | AT1G74950.1 | 37.143 | 280 | 101 | 9 | 2 | 242 | 3 | 246 | 4.19e-43 | 147 |
| Msa0323880 | AT1G19180.1 | 36.667 | 270 | 120 | 8 | 1 | 242 | 1 | 247 | 5.06e-40 | 139 |
| Msa0323880 | AT1G19180.3 | 36.667 | 270 | 120 | 8 | 1 | 242 | 1 | 247 | 5.06e-40 | 139 |
| Msa0323880 | AT1G74950.2 | 36.863 | 255 | 92 | 8 | 2 | 223 | 3 | 221 | 9.86e-37 | 129 |
| Msa0323880 | AT1G72450.1 | 32.911 | 237 | 113 | 10 | 17 | 234 | 4 | 213 | 9.20e-27 | 104 |
| Msa0323880 | AT1G17380.1 | 30.677 | 251 | 129 | 7 | 1 | 241 | 1 | 216 | 1.48e-24 | 99.0 |
| Msa0323880 | AT1G19180.2 | 39.041 | 146 | 59 | 4 | 106 | 242 | 57 | 181 | 1.62e-22 | 91.7 |
| Msa0323880 | AT1G17380.3 | 29.954 | 217 | 114 | 6 | 17 | 223 | 10 | 198 | 5.39e-19 | 83.2 |
| Msa0323880 | AT1G17380.2 | 34.507 | 142 | 59 | 5 | 105 | 236 | 65 | 182 | 4.12e-14 | 70.1 |
| Msa0323880 | AT5G20900.1 | 31.746 | 126 | 63 | 3 | 109 | 230 | 57 | 163 | 5.83e-12 | 63.2 |
| Msa0323880 | AT3G17860.3 | 33.544 | 158 | 70 | 7 | 108 | 234 | 144 | 297 | 2.93e-11 | 62.8 |
| Msa0323880 | AT3G17860.4 | 33.544 | 158 | 70 | 7 | 108 | 234 | 144 | 297 | 2.93e-11 | 62.8 |
| Msa0323880 | AT3G17860.1 | 33.544 | 158 | 70 | 7 | 108 | 234 | 177 | 330 | 3.03e-11 | 63.2 |
| Msa0323880 | AT3G17860.2 | 33.544 | 158 | 70 | 7 | 108 | 234 | 164 | 317 | 4.90e-11 | 62.4 |
Find 76 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACTTTGAAGTGTGTTTC+TGG | 0.099067 | 2_4:+28604452 | Msa0323880:three_prime_UTR |
| GATTCTTTGTGTTGTTGTTT+TGG | 0.231522 | 2_4:-28601788 | None:intergenic |
| TTTATTGAGTCAATATATTA+AGG | 0.231958 | 2_4:+28601976 | Msa0323880:CDS |
| AGCTTCGCTTCATCGGTTTC+TGG | 0.246045 | 2_4:+28603721 | Msa0323880:CDS |
| GCCTTCATTTCCTCCTAATT+TGG | 0.255924 | 2_4:+28603466 | Msa0323880:CDS |
| AGCGAAGCTTTCCTCATAAT+TGG | 0.256396 | 2_4:-28603707 | None:intergenic |
| GCTGGCTTATTAACTTGATA+TGG | 0.264533 | 2_4:-28603936 | None:intergenic |
| CCGGTGCCGGTGCCGGTACT+AGG | 0.269254 | 2_4:-28603542 | None:intergenic |
| CATGAGCTCATGTGCTTTAT+CGG | 0.271727 | 2_4:-28603378 | None:intergenic |
| ACCGAAGTTCTGACCAAATT+AGG | 0.285058 | 2_4:-28603479 | None:intergenic |
| GGTTAAGATCTAATATGTTA+TGG | 0.298064 | 2_4:+28604182 | Msa0323880:three_prime_UTR |
| CTCTTGTTGAACCTGTTCAT+TGG | 0.310437 | 2_4:+28604426 | Msa0323880:three_prime_UTR |
| TCGGAATATTCAGAAGTTTC+CGG | 0.324209 | 2_4:+28601899 | Msa0323880:CDS |
| AGCCAAAGTATGACAAATAA+AGG | 0.324360 | 2_4:-28604218 | None:intergenic |
| ATTGTCAATTGTGCAGCTTT+AGG | 0.328266 | 2_4:-28603314 | None:intergenic |
| CTTCGCCGGTGGTTTGTTGC+CGG | 0.328284 | 2_4:-28601918 | None:intergenic |
| ACAAAAGAACCTTACAACTA+TGG | 0.341905 | 2_4:+28602707 | Msa0323880:CDS |
| GTTAAGATCTAATATGTTAT+GGG | 0.344196 | 2_4:+28604183 | Msa0323880:three_prime_UTR |
| GCCCTTTATTTGTCATACTT+TGG | 0.360012 | 2_4:+28604216 | Msa0323880:three_prime_UTR |
| TTGTCATACTTTGGCTCCAA+TGG | 0.364404 | 2_4:+28604225 | Msa0323880:three_prime_UTR |
| GAGTCAATATATTAAGGAAA+AGG | 0.376605 | 2_4:+28601982 | Msa0323880:CDS |
| TGCTTCAAAGATCTTTCTCT+TGG | 0.389248 | 2_4:+28602007 | Msa0323880:CDS |
| CATGGTTGGAAACAAGTTCA+TGG | 0.390560 | 2_4:-28602670 | None:intergenic |
| AAGAAATTACCGCAAAGATT+AGG | 0.403918 | 2_4:-28603599 | None:intergenic |
| AGTCAATATATTAAGGAAAA+GGG | 0.413916 | 2_4:+28601983 | Msa0323880:CDS |
| TTGCAGATCTGCCAATTATG+AGG | 0.435886 | 2_4:+28603696 | Msa0323880:intron |
| TGTCATACTTTGGCTCCAAT+GGG | 0.437993 | 2_4:+28604226 | Msa0323880:three_prime_UTR |
| GTTCAAAAGTTGTTAATCGT+TGG | 0.438811 | 2_4:+28604401 | Msa0323880:three_prime_UTR |
| AATGATTTGCAGTGCTATCA+AGG | 0.444008 | 2_4:+28603289 | Msa0323880:intron |
| CCTTCCAGACCTAATCTTTG+CGG | 0.448657 | 2_4:+28603590 | Msa0323880:CDS |
| TTCATTAATCGAGCCGGTGC+CGG | 0.460250 | 2_4:-28603555 | None:intergenic |
| AATCGAGCCGGTGCCGGTGC+CGG | 0.469663 | 2_4:-28603549 | None:intergenic |
| ATTACCGCAAAGATTAGGTC+TGG | 0.470927 | 2_4:-28603594 | None:intergenic |
| AGCTCATGTGCTTTATCGGC+AGG | 0.475762 | 2_4:-28603374 | None:intergenic |
| GCCAAAGTATGACAAATAAA+GGG | 0.482335 | 2_4:-28604217 | None:intergenic |
| GAGTCCATGTCATGGCTTGT+GGG | 0.483230 | 2_4:+28603960 | Msa0323880:CDS |
| AAAGTCTCAAGCCAATGAAC+AGG | 0.492608 | 2_4:-28604437 | None:intergenic |
| CCTAGTACCGGCACCGGCAC+CGG | 0.497440 | 2_4:+28603542 | Msa0323880:CDS |
| TCCTAATTTGGTCAGAACTT+CGG | 0.497883 | 2_4:+28603478 | Msa0323880:CDS |
| TGAGGAAAGCTTCGCTTCAT+CGG | 0.498790 | 2_4:+28603714 | Msa0323880:CDS |
| TAGGTCTGGAAGGCACTTGA+AGG | 0.506440 | 2_4:-28603580 | None:intergenic |
| ACATGCAACACAGACCCTTC+TGG | 0.507485 | 2_4:+28602034 | Msa0323880:CDS |
| TCGGTTTCTGGAGAAGAGAA+AGG | 0.512539 | 2_4:+28603733 | Msa0323880:CDS |
| CAAACCACCGGCGAAGTCAC+CGG | 0.513459 | 2_4:+28601925 | Msa0323880:CDS |
| CATGAACTTGTTTCCAACCA+TGG | 0.520010 | 2_4:+28602671 | Msa0323880:CDS |
| ATAAGATGAATAAAATTCAA+TGG | 0.527658 | 2_4:-28604336 | None:intergenic |
| CGGTGCCGGTGCCGGTACTA+GGG | 0.528441 | 2_4:-28603541 | None:intergenic |
| CGATAAAGCACATGAGCTCA+TGG | 0.531706 | 2_4:+28603379 | Msa0323880:CDS |
| TGAGCAAATCCATAGTTGTA+AGG | 0.532508 | 2_4:-28602716 | None:intergenic |
| ATTAACTTGATATGGTGCAT+TGG | 0.537946 | 2_4:-28603928 | None:intergenic |
| TGAGTCCATGTCATGGCTTG+TGG | 0.539136 | 2_4:+28603959 | Msa0323880:CDS |
| GAATTGTTCAAAGCAGCTTG+TGG | 0.542652 | 2_4:-28602741 | None:intergenic |
| TTCAATGGTACCAGTACCAA+TGG | 0.550482 | 2_4:-28604321 | None:intergenic |
| CAATGGGCCTTATCATACAT+AGG | 0.551563 | 2_4:+28604242 | Msa0323880:three_prime_UTR |
| TTCAACTATGTCTACCTCAT+CGG | 0.558400 | 2_4:+28601880 | Msa0323880:exon |
| ATGTTCACAGTAGGAACGAT+TGG | 0.560290 | 2_4:-28603515 | None:intergenic |
| TGCACCCACAAGCCATGACA+TGG | 0.562173 | 2_4:-28603964 | None:intergenic |
| ACCAAATTAGGAGGAAATGA+AGG | 0.565826 | 2_4:-28603467 | None:intergenic |
| TTCTCCGGTGACTTCGCCGG+TGG | 0.568647 | 2_4:-28601929 | None:intergenic |
| CTATGTATGATAAGGCCCAT+TGG | 0.571612 | 2_4:-28604241 | None:intergenic |
| AAGGTGTTCATTAATCGAGC+CGG | 0.572295 | 2_4:-28603561 | None:intergenic |
| AGCCATGACATGGACTCAGC+TGG | 0.572954 | 2_4:-28603954 | None:intergenic |
| AATTAGGAGGAAATGAAGGC+TGG | 0.580229 | 2_4:-28603463 | None:intergenic |
| TTAATAATGCTATCTAGTCA+AGG | 0.590291 | 2_4:-28604127 | None:intergenic |
| ATCATCCCTAGTACCGGCAC+CGG | 0.591088 | 2_4:+28603536 | Msa0323880:CDS |
| CCGCAAAGATTAGGTCTGGA+AGG | 0.596635 | 2_4:-28603590 | None:intergenic |
| GTGAACATCATCCCTAGTAC+CGG | 0.597355 | 2_4:+28603530 | Msa0323880:CDS |
| ATTAAGGCTGCGTACCAGAA+GGG | 0.610362 | 2_4:-28602048 | None:intergenic |
| TTCTGGAGAAGAGAAAGGAT+AGG | 0.619484 | 2_4:+28603738 | Msa0323880:CDS |
| GAAGTTCTGACCAAATTAGG+AGG | 0.621959 | 2_4:-28603476 | None:intergenic |
| ATGATTTGCAGTGCTATCAA+GGG | 0.622638 | 2_4:+28603290 | Msa0323880:intron |
| AGTTTCCGGCAACAAACCAC+CGG | 0.625545 | 2_4:+28601913 | Msa0323880:CDS |
| CTAGGGATGATGTTCACAGT+AGG | 0.634680 | 2_4:-28603524 | None:intergenic |
| AGCCAGCTGAGTCCATGTCA+TGG | 0.640187 | 2_4:+28603952 | Msa0323880:CDS |
| CACAGTAGGAACGATTGGAG+CGG | 0.672313 | 2_4:-28603510 | None:intergenic |
| AACTTCTGAATATTCCGATG+AGG | 0.677602 | 2_4:-28601894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTATTTTTTAAAATT+TGG | + | chr2_4:28602150-28602169 | Msa0323880:intron | 0.0% |
| !!! | ATTGTTATTATATACTAATT+AGG | + | chr2_4:28602490-28602509 | Msa0323880:intron | 10.0% |
| !!! | TTGTTTTTTTTTTTTTTTGT+AGG | + | chr2_4:28602615-28602634 | Msa0323880:intron | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTGTA+GGG | + | chr2_4:28602616-28602635 | Msa0323880:intron | 10.0% |
| !!! | AGTTAAAAAAATTAATTTGA+TGG | + | chr2_4:28602971-28602990 | Msa0323880:intron | 10.0% |
| !! | AAAAATTAATAATCAACTAA+TGG | - | chr2_4:28603233-28603252 | None:intergenic | 10.0% |
| !! | TTTATTGAGTCAATATATTA+AGG | + | chr2_4:28601976-28601995 | Msa0323880:CDS | 15.0% |
| !!! | AACTTTTGAAATTTTTTTGT+GGG | + | chr2_4:28602123-28602142 | Msa0323880:intron | 15.0% |
| !!! | TTTAAAATTTGGTATCTTAA+TGG | + | chr2_4:28602161-28602180 | Msa0323880:intron | 15.0% |
| !!! | TTTTTTTTTCCTTTTTTGTA+AGG | + | chr2_4:28602302-28602321 | Msa0323880:intron | 15.0% |
| !! | TGCAATAGAATAATTTAAAA+TGG | - | chr2_4:28602359-28602378 | None:intergenic | 15.0% |
| !! | CAAAATAAAAATAATCAACA+TGG | - | chr2_4:28602405-28602424 | None:intergenic | 15.0% |
| !!! | ATTTTTTTACAAACCTAATT+TGG | - | chr2_4:28602817-28602836 | None:intergenic | 15.0% |
| !! | ATAAGATGAATAAAATTCAA+TGG | - | chr2_4:28604339-28604358 | None:intergenic | 15.0% |
| !! | AGTCAATATATTAAGGAAAA+GGG | + | chr2_4:28601983-28602002 | Msa0323880:CDS | 20.0% |
| !! | GAAACAAAAAACGAAAAATT+CGG | - | chr2_4:28602078-28602097 | None:intergenic | 20.0% |
| !!! | AATTTTTCGTTTTTTGTTTC+TGG | + | chr2_4:28602078-28602097 | Msa0323880:intron | 20.0% |
| !!! | ATTTTTCGTTTTTTGTTTCT+GGG | + | chr2_4:28602079-28602098 | Msa0323880:intron | 20.0% |
| !!! | CAACTTTTGAAATTTTTTTG+TGG | + | chr2_4:28602122-28602141 | Msa0323880:intron | 20.0% |
| !! | ATTTCATTTCATACCAAATT+AGG | + | chr2_4:28602801-28602820 | Msa0323880:intron | 20.0% |
| !!! | AAAAAATTAATTTGATGGAG+AGG | + | chr2_4:28602976-28602995 | Msa0323880:intron | 20.0% |
| !!! | CAATTGACAATGTTTTATAA+CGG | + | chr2_4:28603326-28603345 | Msa0323880:CDS | 20.0% |
| !!! | GAATCAAATTGTTCAATTTT+AGG | - | chr2_4:28603831-28603850 | None:intergenic | 20.0% |
| !! | AAACTTTGTCTAAAAAATTC+CGG | - | chr2_4:28604094-28604113 | None:intergenic | 20.0% |
| !!! | AATTTTTTAGACAAAGTTTC+TGG | + | chr2_4:28604095-28604114 | Msa0323880:three_prime_UTR | 20.0% |
| !! | GTTAAGATCTAATATGTTAT+GGG | + | chr2_4:28604183-28604202 | Msa0323880:three_prime_UTR | 20.0% |
| !! | TAAAAAACCTATGTATGATA+AGG | - | chr2_4:28604252-28604271 | None:intergenic | 20.0% |
| ! | GAGTCAATATATTAAGGAAA+AGG | + | chr2_4:28601982-28602001 | Msa0323880:CDS | 25.0% |
| ! | ATTATTCCTTTCTTGTTAGT+TGG | + | chr2_4:28602187-28602206 | Msa0323880:intron | 25.0% |
| ! | ATTCTAGTACTTAAGAGTAA+CGG | + | chr2_4:28602224-28602243 | Msa0323880:intron | 25.0% |
| !! | ATAGTTCTACCTTACAAAAA+AGG | - | chr2_4:28602314-28602333 | None:intergenic | 25.0% |
| ! | AATTTATGAGTGATGACAAA+TGG | + | chr2_4:28602838-28602857 | Msa0323880:intron | 25.0% |
| !!! | CTTGTAAATGAACTGTTTTT+TGG | + | chr2_4:28603785-28603804 | Msa0323880:intron | 25.0% |
| !!! | TTAGTCAGATTTATTTTTGC+CGG | + | chr2_4:28604072-28604091 | Msa0323880:three_prime_UTR | 25.0% |
| ! | TTAATAATGCTATCTAGTCA+AGG | - | chr2_4:28604130-28604149 | None:intergenic | 25.0% |
| !!! | TTTTTCTTGTTTAATGCACA+TGG | + | chr2_4:28604161-28604180 | Msa0323880:three_prime_UTR | 25.0% |
| ! | GGTTAAGATCTAATATGTTA+TGG | + | chr2_4:28604182-28604201 | Msa0323880:three_prime_UTR | 25.0% |
| !!! | ATATGTTATGGGTTTTTTGT+TGG | + | chr2_4:28604194-28604213 | Msa0323880:three_prime_UTR | 25.0% |
| !!! | GATTCTTTGTGTTGTTGTTT+TGG | - | chr2_4:28601791-28601810 | None:intergenic | 30.0% |
| CGAAAAATTCGGAGAAATTA+AGG | - | chr2_4:28602067-28602086 | None:intergenic | 30.0% | |
| TATGAACCAACTAACAAGAA+AGG | - | chr2_4:28602196-28602215 | None:intergenic | 30.0% | |
| ! | TTGTGTCAAATTGTTTTCCA+TGG | - | chr2_4:28602691-28602710 | None:intergenic | 30.0% |
| ACAAAAGAACCTTACAACTA+TGG | + | chr2_4:28602707-28602726 | Msa0323880:CDS | 30.0% | |
| CAAAATGAAGAAAACTCACT+TGG | - | chr2_4:28602766-28602785 | None:intergenic | 30.0% | |
| !! | TTTTTAACTAGTTCCACCTA+GGG | - | chr2_4:28602960-28602979 | None:intergenic | 30.0% |
| !!! | TTTTTTAACTAGTTCCACCT+AGG | - | chr2_4:28602961-28602980 | None:intergenic | 30.0% |
| TGCTATTAGTCATTACTAAG+CGG | - | chr2_4:28603156-28603175 | None:intergenic | 30.0% | |
| AAGAAATTACCGCAAAGATT+AGG | - | chr2_4:28603602-28603621 | None:intergenic | 30.0% | |
| AACCATTGACACGTAAAATT+CGG | + | chr2_4:28603624-28603643 | Msa0323880:intron | 30.0% | |
| ! | ATTAACTTGATATGGTGCAT+TGG | - | chr2_4:28603931-28603950 | None:intergenic | 30.0% |
| GCCAAAGTATGACAAATAAA+GGG | - | chr2_4:28604220-28604239 | None:intergenic | 30.0% | |
| AGCCAAAGTATGACAAATAA+AGG | - | chr2_4:28604221-28604240 | None:intergenic | 30.0% | |
| GTTCAAAAGTTGTTAATCGT+TGG | + | chr2_4:28604401-28604420 | Msa0323880:three_prime_UTR | 30.0% | |
| !!! | CTTTGTGTTGTTGTTTTGGA+TGG | - | chr2_4:28601787-28601806 | None:intergenic | 35.0% |
| TTCAACTATGTCTACCTCAT+CGG | + | chr2_4:28601880-28601899 | Msa0323880:exon | 35.0% | |
| AACTTCTGAATATTCCGATG+AGG | - | chr2_4:28601897-28601916 | None:intergenic | 35.0% | |
| TCGGAATATTCAGAAGTTTC+CGG | + | chr2_4:28601899-28601918 | Msa0323880:CDS | 35.0% | |
| !! | TGAGAGAAAGTTGTTTTCTC+CGG | - | chr2_4:28601947-28601966 | None:intergenic | 35.0% |
| TGCTTCAAAGATCTTTCTCT+TGG | + | chr2_4:28602007-28602026 | Msa0323880:CDS | 35.0% | |
| !!! | CGTTTTTTGTTTCTGGGTTT+TGG | + | chr2_4:28602085-28602104 | Msa0323880:intron | 35.0% |
| ! | GTCAAATTGTTTTCCATGGT+TGG | - | chr2_4:28602687-28602706 | None:intergenic | 35.0% |
| TGAGCAAATCCATAGTTGTA+AGG | - | chr2_4:28602719-28602738 | None:intergenic | 35.0% | |
| ! | TTCGTGGAAATAACTTGTAG+AGG | + | chr2_4:28602921-28602940 | Msa0323880:intron | 35.0% |
| ATCTCACTCGCTAAATGTAA+CGG | + | chr2_4:28603072-28603091 | Msa0323880:intron | 35.0% | |
| TATCCTCTACAATTGCAGTA+TGG | - | chr2_4:28603115-28603134 | None:intergenic | 35.0% | |
| ! | AATGATTTGCAGTGCTATCA+AGG | + | chr2_4:28603289-28603308 | Msa0323880:intron | 35.0% |
| ! | ATGATTTGCAGTGCTATCAA+GGG | + | chr2_4:28603290-28603309 | Msa0323880:intron | 35.0% |
| ATTGTCAATTGTGCAGCTTT+AGG | - | chr2_4:28603317-28603336 | None:intergenic | 35.0% | |
| ACCAAATTAGGAGGAAATGA+AGG | - | chr2_4:28603470-28603489 | None:intergenic | 35.0% | |
| TCCTAATTTGGTCAGAACTT+CGG | + | chr2_4:28603478-28603497 | Msa0323880:CDS | 35.0% | |
| ! | ATCCGAATTTTACGTGTCAA+TGG | - | chr2_4:28603629-28603648 | None:intergenic | 35.0% |
| ATTCGGATGACACGAAAAAT+TGG | + | chr2_4:28603641-28603660 | Msa0323880:intron | 35.0% | |
| ATTGGCAGATCTGCAAAAAA+AGG | - | chr2_4:28603692-28603711 | None:intergenic | 35.0% | |
| ! | GCTGGCTTATTAACTTGATA+TGG | - | chr2_4:28603939-28603958 | None:intergenic | 35.0% |
| ! | GCCCTTTATTTGTCATACTT+TGG | + | chr2_4:28604216-28604235 | Msa0323880:three_prime_UTR | 35.0% |
| CAATGGCAAAAAATACAGAG+AGG | - | chr2_4:28604307-28604326 | None:intergenic | 35.0% | |
| !!! | CTCTCTGTATTTTTTGCCAT+TGG | + | chr2_4:28604305-28604324 | Msa0323880:three_prime_UTR | 35.0% |
| !!! | GTATTTTTTGCCATTGGTAC+TGG | + | chr2_4:28604311-28604330 | Msa0323880:three_prime_UTR | 35.0% |
| CATGGTTGGAAACAAGTTCA+TGG | - | chr2_4:28602673-28602692 | None:intergenic | 40.0% | |
| ! | CATGAACTTGTTTCCAACCA+TGG | + | chr2_4:28602671-28602690 | Msa0323880:CDS | 40.0% |
| GAATTGTTCAAAGCAGCTTG+TGG | - | chr2_4:28602744-28602763 | None:intergenic | 40.0% | |
| TTTCCACGAATTGACCCTTT+CGG | - | chr2_4:28602911-28602930 | None:intergenic | 40.0% | |
| ACCTAGATCCTCTACAGATA+CGG | + | chr2_4:28603006-28603025 | Msa0323880:intron | 40.0% | |
| ATTAGTCATTACTAAGCGGC+TGG | - | chr2_4:28603152-28603171 | None:intergenic | 40.0% | |
| CATGAGCTCATGTGCTTTAT+CGG | - | chr2_4:28603381-28603400 | None:intergenic | 40.0% | |
| ! | CTCATGGCTTTTGCTAACAA+AGG | + | chr2_4:28603395-28603414 | Msa0323880:CDS | 40.0% |
| AATTAGGAGGAAATGAAGGC+TGG | - | chr2_4:28603466-28603485 | None:intergenic | 40.0% | |
| GCCTTCATTTCCTCCTAATT+TGG | + | chr2_4:28603466-28603485 | Msa0323880:CDS | 40.0% | |
| ! | GAAGTTCTGACCAAATTAGG+AGG | - | chr2_4:28603479-28603498 | None:intergenic | 40.0% |
| ! | ACCGAAGTTCTGACCAAATT+AGG | - | chr2_4:28603482-28603501 | None:intergenic | 40.0% |
| ATGTTCACAGTAGGAACGAT+TGG | - | chr2_4:28603518-28603537 | None:intergenic | 40.0% | |
| ! | AAGGTGTTCATTAATCGAGC+CGG | - | chr2_4:28603564-28603583 | None:intergenic | 40.0% |
| ATTACCGCAAAGATTAGGTC+TGG | - | chr2_4:28603597-28603616 | None:intergenic | 40.0% | |
| TTGCAGATCTGCCAATTATG+AGG | + | chr2_4:28603696-28603715 | Msa0323880:intron | 40.0% | |
| AGCGAAGCTTTCCTCATAAT+TGG | - | chr2_4:28603710-28603729 | None:intergenic | 40.0% | |
| ! | TTCTGGAGAAGAGAAAGGAT+AGG | + | chr2_4:28603738-28603757 | Msa0323880:CDS | 40.0% |
| ! | TTGTCATACTTTGGCTCCAA+TGG | + | chr2_4:28604225-28604244 | Msa0323880:three_prime_UTR | 40.0% |
| ! | TGTCATACTTTGGCTCCAAT+GGG | + | chr2_4:28604226-28604245 | Msa0323880:three_prime_UTR | 40.0% |
| CTATGTATGATAAGGCCCAT+TGG | - | chr2_4:28604244-28604263 | None:intergenic | 40.0% | |
| ! | CAATGGGCCTTATCATACAT+AGG | + | chr2_4:28604242-28604261 | Msa0323880:three_prime_UTR | 40.0% |
| TTCAATGGTACCAGTACCAA+TGG | - | chr2_4:28604324-28604343 | None:intergenic | 40.0% | |
| CTCTTGTTGAACCTGTTCAT+TGG | + | chr2_4:28604426-28604445 | Msa0323880:three_prime_UTR | 40.0% | |
| AAAGTCTCAAGCCAATGAAC+AGG | - | chr2_4:28604440-28604459 | None:intergenic | 40.0% | |
| !! | GAGACTTTGAAGTGTGTTTC+TGG | + | chr2_4:28604452-28604471 | Msa0323880:three_prime_UTR | 40.0% |
| ATTAAGGCTGCGTACCAGAA+GGG | - | chr2_4:28602051-28602070 | None:intergenic | 45.0% | |
| AATTAAGGCTGCGTACCAGA+AGG | - | chr2_4:28602052-28602071 | None:intergenic | 45.0% | |
| AGGATTTAGATCCTCTCCCT+AGG | + | chr2_4:28602941-28602960 | Msa0323880:intron | 45.0% | |
| ATTTAGATCCTCTCCCTAGG+TGG | + | chr2_4:28602944-28602963 | Msa0323880:intron | 45.0% | |
| ACCGTATCTGTAGAGGATCT+AGG | - | chr2_4:28603010-28603029 | None:intergenic | 45.0% | |
| GATCCTCTACAGATACGGTA+TGG | + | chr2_4:28603011-28603030 | Msa0323880:intron | 45.0% | |
| GCACCATACTGCAATTGTAG+AGG | + | chr2_4:28603109-28603128 | Msa0323880:intron | 45.0% | |
| CGATAAAGCACATGAGCTCA+TGG | + | chr2_4:28603379-28603398 | Msa0323880:CDS | 45.0% | |
| CTAGGGATGATGTTCACAGT+AGG | - | chr2_4:28603527-28603546 | None:intergenic | 45.0% | |
| GTGAACATCATCCCTAGTAC+CGG | + | chr2_4:28603530-28603549 | Msa0323880:CDS | 45.0% | |
| CCTTCCAGACCTAATCTTTG+CGG | + | chr2_4:28603590-28603609 | Msa0323880:CDS | 45.0% | |
| TGAGGAAAGCTTCGCTTCAT+CGG | + | chr2_4:28603714-28603733 | Msa0323880:CDS | 45.0% | |
| ! | TCGGTTTCTGGAGAAGAGAA+AGG | + | chr2_4:28603733-28603752 | Msa0323880:CDS | 45.0% |
| GGAGAAGAGAAAGGATAGGT+AGG | + | chr2_4:28603742-28603761 | Msa0323880:intron | 45.0% | |
| AGTTTCCGGCAACAAACCAC+CGG | + | chr2_4:28601913-28601932 | Msa0323880:CDS | 50.0% | |
| ACATGCAACACAGACCCTTC+TGG | + | chr2_4:28602034-28602053 | Msa0323880:CDS | 50.0% | |
| ACGAATTGACCCTTTCGGCA+AGG | - | chr2_4:28602906-28602925 | None:intergenic | 50.0% | |
| TTGCCGAAAGGGTCAATTCG+TGG | + | chr2_4:28602905-28602924 | Msa0323880:intron | 50.0% | |
| AACTAGTTCCACCTAGGGAG+AGG | - | chr2_4:28602955-28602974 | None:intergenic | 50.0% | |
| GCACCATACCGTATCTGTAG+AGG | - | chr2_4:28603017-28603036 | None:intergenic | 50.0% | |
| ! | TCATTACTAAGCGGCTGGCT+CGG | - | chr2_4:28603147-28603166 | None:intergenic | 50.0% |
| AGCTCATGTGCTTTATCGGC+AGG | - | chr2_4:28603377-28603396 | None:intergenic | 50.0% | |
| CACAGTAGGAACGATTGGAG+CGG | - | chr2_4:28603513-28603532 | None:intergenic | 50.0% | |
| TTCATTAATCGAGCCGGTGC+CGG | - | chr2_4:28603558-28603577 | None:intergenic | 50.0% | |
| !! | TAGGTCTGGAAGGCACTTGA+AGG | - | chr2_4:28603583-28603602 | None:intergenic | 50.0% |
| CCGCAAAGATTAGGTCTGGA+AGG | - | chr2_4:28603593-28603612 | None:intergenic | 50.0% | |
| !! | AGCTTCGCTTCATCGGTTTC+TGG | + | chr2_4:28603721-28603740 | Msa0323880:CDS | 50.0% |
| TGAGTCCATGTCATGGCTTG+TGG | + | chr2_4:28603959-28603978 | Msa0323880:CDS | 50.0% | |
| ! | GAGTCCATGTCATGGCTTGT+GGG | + | chr2_4:28603960-28603979 | Msa0323880:CDS | 50.0% |
| ! | GTTTTCTCCGGTGACTTCGC+CGG | - | chr2_4:28601935-28601954 | None:intergenic | 55.0% |
| ATAGCTGTCGCCTTGCCGAA+AGG | + | chr2_4:28602893-28602912 | Msa0323880:intron | 55.0% | |
| TAGCTGTCGCCTTGCCGAAA+GGG | + | chr2_4:28602894-28602913 | Msa0323880:intron | 55.0% | |
| !! | ATCATCCCTAGTACCGGCAC+CGG | + | chr2_4:28603536-28603555 | Msa0323880:CDS | 55.0% |
| AGCCAGCTGAGTCCATGTCA+TGG | + | chr2_4:28603952-28603971 | Msa0323880:CDS | 55.0% | |
| AGCCATGACATGGACTCAGC+TGG | - | chr2_4:28603957-28603976 | None:intergenic | 55.0% | |
| TGCACCCACAAGCCATGACA+TGG | - | chr2_4:28603967-28603986 | None:intergenic | 55.0% | |
| !! | CTTCGCCGGTGGTTTGTTGC+CGG | - | chr2_4:28601921-28601940 | None:intergenic | 60.0% |
| CAAACCACCGGCGAAGTCAC+CGG | + | chr2_4:28601925-28601944 | Msa0323880:CDS | 60.0% | |
| ATGGCGAGAGCGAGCCTTAG+CGG | + | chr2_4:28602857-28602876 | Msa0323880:intron | 60.0% | |
| TATCGCCACGCTAGCCGCTA+AGG | - | chr2_4:28602874-28602893 | None:intergenic | 60.0% | |
| TTCTCCGGTGACTTCGCCGG+TGG | - | chr2_4:28601932-28601951 | None:intergenic | 65.0% | |
| GCGAGCCTTAGCGGCTAGCG+TGG | + | chr2_4:28602866-28602885 | Msa0323880:intron | 70.0% | |
| !! | CGGTGCCGGTGCCGGTACTA+GGG | - | chr2_4:28603544-28603563 | None:intergenic | 70.0% |
| !! | CCTAGTACCGGCACCGGCAC+CGG | + | chr2_4:28603542-28603561 | Msa0323880:CDS | 70.0% |
| !! | AATCGAGCCGGTGCCGGTGC+CGG | - | chr2_4:28603552-28603571 | None:intergenic | 70.0% |
| !! | CCGGTGCCGGTGCCGGTACT+AGG | - | chr2_4:28603545-28603564 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 28601767 | 28604475 | 28601767 | ID=Msa0323880;Name=Msa0323880 |
| chr2_4 | mRNA | 28601767 | 28604475 | 28601767 | ID=Msa0323880-mRNA-1;Parent=Msa0323880;Name=Msa0323880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=120|1|1|1|1|1|5|471|250 |
| chr2_4 | exon | 28601767 | 28602055 | 28601767 | ID=Msa0323880-mRNA-1:exon:9799;Parent=Msa0323880-mRNA-1 |
| chr2_4 | exon | 28602637 | 28602766 | 28602637 | ID=Msa0323880-mRNA-1:exon:9800;Parent=Msa0323880-mRNA-1 |
| chr2_4 | exon | 28603301 | 28603611 | 28603301 | ID=Msa0323880-mRNA-1:exon:9801;Parent=Msa0323880-mRNA-1 |
| chr2_4 | exon | 28603702 | 28603759 | 28603702 | ID=Msa0323880-mRNA-1:exon:9802;Parent=Msa0323880-mRNA-1 |
| chr2_4 | exon | 28603920 | 28604475 | 28603920 | ID=Msa0323880-mRNA-1:exon:9803;Parent=Msa0323880-mRNA-1 |
| chr2_4 | five_prime_UTR | 28601767 | 28601886 | 28601767 | ID=Msa0323880-mRNA-1:five_prime_utr;Parent=Msa0323880-mRNA-1 |
| chr2_4 | CDS | 28601887 | 28602055 | 28601887 | ID=Msa0323880-mRNA-1:cds;Parent=Msa0323880-mRNA-1 |
| chr2_4 | CDS | 28602637 | 28602766 | 28602637 | ID=Msa0323880-mRNA-1:cds;Parent=Msa0323880-mRNA-1 |
| chr2_4 | CDS | 28603301 | 28603611 | 28603301 | ID=Msa0323880-mRNA-1:cds;Parent=Msa0323880-mRNA-1 |
| chr2_4 | CDS | 28603702 | 28603759 | 28603702 | ID=Msa0323880-mRNA-1:cds;Parent=Msa0323880-mRNA-1 |
| chr2_4 | CDS | 28603920 | 28604004 | 28603920 | ID=Msa0323880-mRNA-1:cds;Parent=Msa0323880-mRNA-1 |
| chr2_4 | three_prime_UTR | 28604005 | 28604475 | 28604005 | ID=Msa0323880-mRNA-1:three_prime_utr;Parent=Msa0323880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
