Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704610 | XP_003630080.1 | 87.153 | 288 | 22 | 2 | 1 | 288 | 1 | 273 | 1.16e-176 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704610 | sp|Q5HZH2|TSR3_MOUSE | 41.633 | 245 | 128 | 3 | 5 | 246 | 2 | 234 | 4.43e-58 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704610 | G7LAF7 | 87.153 | 288 | 22 | 2 | 1 | 288 | 1 | 273 | 5.53e-177 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0650920 | Msa0704610 | 0.802229 | 6.195479e-49 | -8.615850e-47 |
| Msa0687630 | Msa0704610 | 0.806539 | 7.830215e-50 | -8.615850e-47 |
| Msa0704610 | Msa1184370 | 0.808433 | 3.105146e-50 | -8.615850e-47 |
| Msa0704610 | Msa1358430 | 0.875463 | 3.020515e-68 | -8.615850e-47 |
| Msa0704610 | Msa1404190 | 0.806762 | 7.025966e-50 | -8.615850e-47 |
| Msa0704610 | Msa1438640 | 0.801796 | 7.602709e-49 | -8.615850e-47 |
| Msa0471590 | Msa0704610 | 0.813681 | 2.263613e-51 | -8.615850e-47 |
| Msa0581070 | Msa0704610 | 0.800797 | 1.217504e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704610 | MtrunA17_Chr8g0382791 | 87.153 | 288 | 22 | 2 | 1 | 288 | 1 | 273 | 1.06e-180 | 498 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704610 | AT5G10070.2 | 67.111 | 225 | 60 | 2 | 59 | 280 | 44 | 257 | 6.00e-104 | 304 |
| Msa0704610 | AT5G10070.1 | 73.203 | 153 | 30 | 1 | 59 | 211 | 44 | 185 | 8.54e-79 | 237 |
Find 77 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTGTTGACACAGGATTT+TGG | 0.156208 | 4_4:+77078160 | Msa0704610:CDS |
| CATGGCCGACCATAATTTAT+TGG | 0.182712 | 4_4:-77080159 | None:intergenic |
| TGTTGCTTGGCAAGTTTAAC+TGG | 0.229226 | 4_4:+77080595 | Msa0704610:CDS |
| GTATACATCACCGCCGAATT+TGG | 0.230241 | 4_4:+77078115 | Msa0704610:CDS |
| AAATGATAAAGTAAATAATT+TGG | 0.266881 | 4_4:-77082094 | None:intergenic |
| CAACAGCCAATCCTTTATTC+TGG | 0.275842 | 4_4:-77079443 | None:intergenic |
| TGGCTGCTGCTTTGACAATA+TGG | 0.286533 | 4_4:+77080205 | Msa0704610:CDS |
| CTCTAACCATGCTGCGATAC+TGG | 0.303027 | 4_4:+77081851 | Msa0704610:three_prime_UTR |
| TACTCTTTAATCCAGAATAA+AGG | 0.315486 | 4_4:+77079432 | Msa0704610:CDS |
| TTACGTGTGACTAATGGTTT+TGG | 0.315588 | 4_4:+77079128 | Msa0704610:CDS |
| AAATAATTTCAGCACTGTTT+TGG | 0.333601 | 4_4:-77081403 | None:intergenic |
| TCTAATATCATGCATGTCAT+TGG | 0.344335 | 4_4:+77078139 | Msa0704610:CDS |
| GCGGCAAACCCAATAAATTA+TGG | 0.347803 | 4_4:+77080150 | Msa0704610:CDS |
| TTATTTCTGTTCAAAATGAT+TGG | 0.353309 | 4_4:+77081420 | Msa0704610:CDS |
| GCACAAGATATATCAGATTC+AGG | 0.355976 | 4_4:-77079100 | None:intergenic |
| ATGGCCGACCATAATTTATT+GGG | 0.359883 | 4_4:-77080158 | None:intergenic |
| CTGCGATACTGGAATCAATA+TGG | 0.360424 | 4_4:+77081862 | Msa0704610:three_prime_UTR |
| CTCTTCATCACTATTGTCTA+TGG | 0.381809 | 4_4:-77081790 | None:intergenic |
| AACTCTTCCGATTCTGATGA+TGG | 0.381819 | 4_4:+77081732 | Msa0704610:CDS |
| TCACTATCAGTAGGAGCCTT+TGG | 0.382863 | 4_4:-77081464 | None:intergenic |
| CGGGCGCAAGCTTTCAAGAC+TGG | 0.386858 | 4_4:+77078207 | Msa0704610:CDS |
| GCGCAGCGCAACTTCACAAA+AGG | 0.400711 | 4_4:-77079498 | None:intergenic |
| GAAAATCAAAGCTGCGTTCA+AGG | 0.401936 | 4_4:+77077676 | Msa0704610:CDS |
| GCTATCTTGTGTAGAGGCCT+TGG | 0.413021 | 4_4:+77080185 | Msa0704610:CDS |
| GAGACACATTGCTTTCCAAC+TGG | 0.415063 | 4_4:-77079399 | None:intergenic |
| CTTCTTAATACTTTACTGTT+CGG | 0.421998 | 4_4:-77077517 | None:intergenic |
| CGACTGGATTGAGCATGATT+GGG | 0.424602 | 4_4:-77077628 | None:intergenic |
| GATTAAAGAGTAATCTTCTC+TGG | 0.428373 | 4_4:-77079421 | None:intergenic |
| TCGACTGGATTGAGCATGAT+TGG | 0.433538 | 4_4:-77077629 | None:intergenic |
| TGAGAGTTGGTTGTGTCGAC+TGG | 0.435345 | 4_4:-77077644 | None:intergenic |
| GGGCGCAAGCTTTCAAGACT+GGG | 0.452113 | 4_4:+77078208 | Msa0704610:CDS |
| CATGATATTAGATCCAAATT+CGG | 0.452530 | 4_4:-77078128 | None:intergenic |
| TTGGCTATCACAAGCGCGTC+AGG | 0.460396 | 4_4:+77081439 | Msa0704610:CDS |
| AGCTGAGATATGCATCGTCT+TGG | 0.461211 | 4_4:+77081925 | Msa0704610:three_prime_UTR |
| GTTGCTTGGCAAGTTTAACT+GGG | 0.464029 | 4_4:+77080596 | Msa0704610:CDS |
| CTAATATCATGCATGTCATT+GGG | 0.467975 | 4_4:+77078140 | Msa0704610:CDS |
| CAGGAGTTACGTGTGACTAA+TGG | 0.482383 | 4_4:+77079122 | Msa0704610:CDS |
| GCTGAGATATGCATCGTCTT+GGG | 0.486978 | 4_4:+77081926 | Msa0704610:three_prime_UTR |
| TTTAATCCAGAATAAAGGAT+TGG | 0.488019 | 4_4:+77079437 | Msa0704610:CDS |
| GAATAAAGGATTGGCTGTTG+TGG | 0.490897 | 4_4:+77079446 | Msa0704610:CDS |
| GGCTGTTGTGGATTGCTCGT+GGG | 0.496557 | 4_4:+77079458 | Msa0704610:CDS |
| TATGCTGCATGGCAGTTGTT+AGG | 0.502876 | 4_4:+77081685 | Msa0704610:intron |
| TGGAAGCCCATCATCAGAAT+CGG | 0.511595 | 4_4:-77081739 | None:intergenic |
| AATTGTTTGCGAGAGAGAGA+TGG | 0.519701 | 4_4:+77077567 | Msa0704610:exon |
| GAAACAGCAAATCTGTTGCT+TGG | 0.521180 | 4_4:+77080582 | Msa0704610:CDS |
| CAGTCTTGAAAGCTTGCGCC+CGG | 0.525147 | 4_4:-77078206 | None:intergenic |
| ATTGTTTGCGAGAGAGAGAT+GGG | 0.525702 | 4_4:+77077568 | Msa0704610:exon |
| ATGGGCTTCCACCTCTTGAA+AGG | 0.540522 | 4_4:+77081751 | Msa0704610:CDS |
| TTTCGTTGTCTAGTGAGAGT+TGG | 0.547894 | 4_4:-77077657 | None:intergenic |
| TTCATGTTCCTTTCAAGAGG+TGG | 0.548622 | 4_4:-77081759 | None:intergenic |
| ACTCTTCCGATTCTGATGAT+GGG | 0.551069 | 4_4:+77081733 | Msa0704610:CDS |
| GGGTTTGCCGCTACAAGCCA+TGG | 0.551853 | 4_4:-77080138 | None:intergenic |
| TGGCTGTTGTGGATTGCTCG+TGG | 0.556974 | 4_4:+77079457 | Msa0704610:CDS |
| TGATTCATGTTCCTTTCAAG+AGG | 0.557002 | 4_4:-77081762 | None:intergenic |
| GAATCTGATATATCTTGTGC+AGG | 0.559064 | 4_4:+77079103 | Msa0704610:CDS |
| TGCAGTGCCATGGCTTGTAG+CGG | 0.560226 | 4_4:+77080131 | Msa0704610:intron |
| TGTCATTGGGCTGTTGACAC+AGG | 0.566948 | 4_4:+77078153 | Msa0704610:CDS |
| TGAAAATTACAGAAACATCA+AGG | 0.577569 | 4_4:-77082049 | None:intergenic |
| TATTGTCAAAGCAGCAGCCA+AGG | 0.583613 | 4_4:-77080202 | None:intergenic |
| TTAATGTATAAGAGAAACGC+TGG | 0.584564 | 4_4:-77081962 | None:intergenic |
| GCGGTGATGTATACAGTGGT+AGG | 0.595033 | 4_4:-77078106 | None:intergenic |
| ATGTCAGCTATCTTGTGTAG+AGG | 0.595536 | 4_4:+77080179 | Msa0704610:CDS |
| TTGCTTGGCAAGTTTAACTG+GGG | 0.613832 | 4_4:+77080597 | Msa0704610:CDS |
| AAACATCAAGGCCTCACAGA+GGG | 0.624939 | 4_4:-77082037 | None:intergenic |
| CCAATACAGGGAATTACTGA+AGG | 0.625012 | 4_4:+77081367 | Msa0704610:intron |
| ACAAGCGCGTCAGGTTCCAA+AGG | 0.626008 | 4_4:+77081448 | Msa0704610:CDS |
| TTGATTCCAGTATCGCAGCA+TGG | 0.640776 | 4_4:-77081857 | None:intergenic |
| CAAACCCAATAAATTATGGT+CGG | 0.643896 | 4_4:+77080154 | Msa0704610:CDS |
| GACTGGATTGAGCATGATTG+GGG | 0.648452 | 4_4:-77077627 | None:intergenic |
| TCTACACAAGATAGCTGACA+TGG | 0.652062 | 4_4:-77080177 | None:intergenic |
| TATAAGTTCATACAGAGGCG+AGG | 0.658960 | 4_4:-77079525 | None:intergenic |
| CACAGACCTTCACTATCAGT+AGG | 0.664914 | 4_4:-77081473 | None:intergenic |
| AAGGCTCCTACTGATAGTGA+AGG | 0.667476 | 4_4:+77081467 | Msa0704610:CDS |
| GATATTAGATCCAAATTCGG+CGG | 0.670190 | 4_4:-77078125 | None:intergenic |
| TTCGGCGGTGATGTATACAG+TGG | 0.720667 | 4_4:-77078110 | None:intergenic |
| GAAACATCAAGGCCTCACAG+AGG | 0.751301 | 4_4:-77082038 | None:intergenic |
| GTTTGCGAGAGAGAGATGGG+CGG | 0.777519 | 4_4:+77077571 | Msa0704610:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATTTGAATAAAAATTT+AGG | + | chr4_4:77080433-77080452 | Msa0704610:intron | 10.0% |
| !! | AAATGATAAAGTAAATAATT+TGG | - | chr4_4:77082097-77082116 | None:intergenic | 10.0% |
| !!! | CATTATTTTTTACATTCAAT+AGG | + | chr4_4:77078274-77078293 | Msa0704610:intron | 15.0% |
| !! | TTAAATTAGTTGCAAAATAT+TGG | + | chr4_4:77078477-77078496 | Msa0704610:intron | 15.0% |
| !!! | TTTTGTTTACTTATATGAAT+GGG | + | chr4_4:77078765-77078784 | Msa0704610:intron | 15.0% |
| !!! | TGTTTTTTATACAATTTCTT+TGG | + | chr4_4:77078894-77078913 | Msa0704610:intron | 15.0% |
| !!! | CAAAAAATTGATGATATAAA+AGG | + | chr4_4:77078942-77078961 | Msa0704610:intron | 15.0% |
| !! | CAAAGTAAATTATTAAGTTT+GGG | - | chr4_4:77080459-77080478 | None:intergenic | 15.0% |
| !! | TTATTGAAATGAAAACTATT+TGG | + | chr4_4:77080523-77080542 | Msa0704610:intron | 15.0% |
| !!! | TTAACAAAAAAATTTGTTCA+TGG | - | chr4_4:77080970-77080989 | None:intergenic | 15.0% |
| !! | ATATAATTGAGAATCAAATT+CGG | - | chr4_4:77081306-77081325 | None:intergenic | 15.0% |
| !! | AATTTGATTCTCAATTATAT+GGG | + | chr4_4:77081306-77081325 | Msa0704610:intron | 15.0% |
| !!! | TGTTATATATCTATTTTACA+CGG | + | chr4_4:77081498-77081517 | Msa0704610:intron | 15.0% |
| !!! | ATTTACTTTATCATTTTTCA+AGG | + | chr4_4:77082101-77082120 | Msa0704610:three_prime_UTR | 15.0% |
| !! | ACAGTTAAATTATGTTCATA+AGG | - | chr4_4:77077888-77077907 | None:intergenic | 20.0% |
| !!! | GATTAGTTTTTGTTTTTTTC+TGG | + | chr4_4:77078389-77078408 | Msa0704610:intron | 20.0% |
| !!! | TTAAAATAGTTTTGAATGCT+AGG | + | chr4_4:77078433-77078452 | Msa0704610:intron | 20.0% |
| !!! | AATTTCATGTATAGTTTTAG+AGG | - | chr4_4:77078572-77078591 | None:intergenic | 20.0% |
| !! | TCCAAATCTAATATTTCATA+TGG | + | chr4_4:77078702-77078721 | Msa0704610:intron | 20.0% |
| !! | TCCATATGAAATATTAGATT+TGG | - | chr4_4:77078706-77078725 | None:intergenic | 20.0% |
| !! | AAATCTAATATTTCATATGG+AGG | + | chr4_4:77078705-77078724 | Msa0704610:intron | 20.0% |
| !!! | CTTTTGTTTACTTATATGAA+TGG | + | chr4_4:77078764-77078783 | Msa0704610:intron | 20.0% |
| !! | CTTATTATATAATATGTCAG+TGG | + | chr4_4:77079076-77079095 | Msa0704610:intron | 20.0% |
| !! | TCTTAAAAACGTTAATAAGA+AGG | - | chr4_4:77079200-77079219 | None:intergenic | 20.0% |
| !!! | CAATATTTTGTTTTCTCTTT+TGG | + | chr4_4:77079289-77079308 | Msa0704610:intron | 20.0% |
| !!! | ATTACTAATGCGTTTTTAAA+TGG | + | chr4_4:77080408-77080427 | Msa0704610:intron | 20.0% |
| !! | GCAAAGTAAATTATTAAGTT+TGG | - | chr4_4:77080460-77080479 | None:intergenic | 20.0% |
| !! | TTAATAATTTACTTTGCAGT+TGG | + | chr4_4:77080463-77080482 | Msa0704610:intron | 20.0% |
| !! | TTTCACTTATGATATTTACA+AGG | + | chr4_4:77080700-77080719 | Msa0704610:intron | 20.0% |
| !! | TTCACTTATGATATTTACAA+GGG | + | chr4_4:77080701-77080720 | Msa0704610:intron | 20.0% |
| !!! | TTTTTATATCATGAACTACA+AGG | - | chr4_4:77080822-77080841 | None:intergenic | 20.0% |
| !! | CTTATAAATATGCTTCATAA+AGG | - | chr4_4:77080883-77080902 | None:intergenic | 20.0% |
| !! | TTAGTTATGTATAGATAACT+AGG | + | chr4_4:77081023-77081042 | Msa0704610:intron | 20.0% |
| !! | TAGTTATGTATAGATAACTA+GGG | + | chr4_4:77081024-77081043 | Msa0704610:intron | 20.0% |
| !! | GAATTTGATTCTCAATTATA+TGG | + | chr4_4:77081305-77081324 | Msa0704610:intron | 20.0% |
| !! | ATTTGATTCTCAATTATATG+GGG | + | chr4_4:77081307-77081326 | Msa0704610:intron | 20.0% |
| !!! | TTATTTCTGTTCAAAATGAT+TGG | + | chr4_4:77081420-77081439 | Msa0704610:CDS | 20.0% |
| !!! | GTTATATATCTATTTTACAC+GGG | + | chr4_4:77081499-77081518 | Msa0704610:intron | 20.0% |
| !!! | TTATATATCTATTTTACACG+GGG | + | chr4_4:77081500-77081519 | Msa0704610:intron | 20.0% |
| !! | AAAAATTCACAATATATCAG+AGG | - | chr4_4:77081643-77081662 | None:intergenic | 20.0% |
| ! | CTTCTTAATACTTTACTGTT+CGG | - | chr4_4:77077520-77077539 | None:intergenic | 25.0% |
| ! | CATGATATTAGATCCAAATT+CGG | - | chr4_4:77078131-77078150 | None:intergenic | 25.0% |
| ! | GTGAAACAAATATCAATTAG+AGG | - | chr4_4:77078524-77078543 | None:intergenic | 25.0% |
| !! | AAATTGATGATATAAAAGGC+TGG | + | chr4_4:77078946-77078965 | Msa0704610:intron | 25.0% |
| ! | GTTGATTATGTAATCTATGA+AGG | + | chr4_4:77079030-77079049 | Msa0704610:intron | 25.0% |
| ! | AAACAAAATATTGCTTCACA+AGG | - | chr4_4:77079282-77079301 | None:intergenic | 25.0% |
| ! | TACTCTTTAATCCAGAATAA+AGG | + | chr4_4:77079432-77079451 | Msa0704610:CDS | 25.0% |
| ! | TTTAATCCAGAATAAAGGAT+TGG | + | chr4_4:77079437-77079456 | Msa0704610:CDS | 25.0% |
| ! | CATTACATTATTTGTGATTG+AGG | - | chr4_4:77080099-77080118 | None:intergenic | 25.0% |
| ! | TTGACAATATGGTATAGAAA+TGG | + | chr4_4:77080216-77080235 | Msa0704610:intron | 25.0% |
| !!! | TTATTTTTGACTAGACACTT+TGG | + | chr4_4:77080247-77080266 | Msa0704610:intron | 25.0% |
| !! | TTTCAGATACAATTTTTGCA+GGG | - | chr4_4:77080298-77080317 | None:intergenic | 25.0% |
| !! | ATTTCAGATACAATTTTTGC+AGG | - | chr4_4:77080299-77080318 | None:intergenic | 25.0% |
| ! | TCAGCCAACATAAAAAATAT+GGG | - | chr4_4:77080329-77080348 | None:intergenic | 25.0% |
| ! | ATCAGCCAACATAAAAAATA+TGG | - | chr4_4:77080330-77080349 | None:intergenic | 25.0% |
| !!! | ATATTTTCACTTTGCTATCT+AGG | + | chr4_4:77080673-77080692 | Msa0704610:intron | 25.0% |
| !!! | CTTTTTTCATTTAACAGTGT+GGG | - | chr4_4:77080761-77080780 | None:intergenic | 25.0% |
| ! | TGTTAAATGAAAAAAGCAAC+AGG | + | chr4_4:77080765-77080784 | Msa0704610:intron | 25.0% |
| ! | GTTAAATGAAAAAAGCAACA+GGG | + | chr4_4:77080766-77080785 | Msa0704610:intron | 25.0% |
| ! | AAGTTATGTAAGTTACGTTA+CGG | - | chr4_4:77080851-77080870 | None:intergenic | 25.0% |
| ! | TAATTCCAGTATTCATTTGT+AGG | - | chr4_4:77080928-77080947 | None:intergenic | 25.0% |
| ! | CATATTAGATCTCTCAATTA+AGG | - | chr4_4:77081135-77081154 | None:intergenic | 25.0% |
| !! | AACTTTCTTTTAACCAATAC+AGG | + | chr4_4:77081354-77081373 | Msa0704610:intron | 25.0% |
| !! | ACTTTCTTTTAACCAATACA+GGG | + | chr4_4:77081355-77081374 | Msa0704610:intron | 25.0% |
| !! | AAATAATTTCAGCACTGTTT+TGG | - | chr4_4:77081406-77081425 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTTAATCTGACAC+TGG | + | chr4_4:77081822-77081841 | Msa0704610:three_prime_UTR | 25.0% |
| ! | TGAAAATTACAGAAACATCA+AGG | - | chr4_4:77082052-77082071 | None:intergenic | 25.0% |
| ! | AAATAGCTGAGTAAAAAAAG+AGG | + | chr4_4:77082130-77082149 | Msa0704610:three_prime_UTR | 25.0% |
| ! | ATGTTCATAAGGTATCTTTG+AGG | - | chr4_4:77077877-77077896 | None:intergenic | 30.0% |
| GTTCCATAAAAATCCACAAT+CGG | - | chr4_4:77078039-77078058 | None:intergenic | 30.0% | |
| ! | ATTTTTATGGAACCCAAAGT+TGG | + | chr4_4:77078046-77078065 | Msa0704610:intron | 30.0% |
| TCTAATATCATGCATGTCAT+TGG | + | chr4_4:77078139-77078158 | Msa0704610:CDS | 30.0% | |
| CTAATATCATGCATGTCATT+GGG | + | chr4_4:77078140-77078159 | Msa0704610:CDS | 30.0% | |
| TTGTGAGTGCAAATACATAT+TGG | + | chr4_4:77078304-77078323 | Msa0704610:intron | 30.0% | |
| TCAAATTAATGCAGGTACAA+GGG | - | chr4_4:77078343-77078362 | None:intergenic | 30.0% | |
| ATCAAATTAATGCAGGTACA+AGG | - | chr4_4:77078344-77078363 | None:intergenic | 30.0% | |
| CTTCAACATCAAATTAATGC+AGG | - | chr4_4:77078351-77078370 | None:intergenic | 30.0% | |
| AAAATATTGGACGATCACAT+TGG | + | chr4_4:77078490-77078509 | Msa0704610:intron | 30.0% | |
| ATCATACTTGAAGTATGAAG+AGG | + | chr4_4:77078648-77078667 | Msa0704610:intron | 30.0% | |
| GTTTACTTATATGAATGGGT+AGG | + | chr4_4:77078769-77078788 | Msa0704610:intron | 30.0% | |
| CCACAGATTAAAGTAATTGT+GGG | - | chr4_4:77078822-77078841 | None:intergenic | 30.0% | |
| ACCACAGATTAAAGTAATTG+TGG | - | chr4_4:77078823-77078842 | None:intergenic | 30.0% | |
| ACTTTAATCTGTGGTAATAC+TGG | + | chr4_4:77078828-77078847 | Msa0704610:intron | 30.0% | |
| CAGATACTATGATATCTCTA+TGG | - | chr4_4:77078855-77078874 | None:intergenic | 30.0% | |
| TCTTTGGACAAAAAATCTAG+TGG | + | chr4_4:77078910-77078929 | Msa0704610:intron | 30.0% | |
| GATTAAAGAGTAATCTTCTC+TGG | - | chr4_4:77079424-77079443 | None:intergenic | 30.0% | |
| AATAACGTCGTGTTGAAATT+TGG | + | chr4_4:77079684-77079703 | Msa0704610:intron | 30.0% | |
| ATAACGTCGTGTTGAAATTT+GGG | + | chr4_4:77079685-77079704 | Msa0704610:intron | 30.0% | |
| TCTGATACCATGTTGAAATT+TGG | + | chr4_4:77079891-77079910 | Msa0704610:intron | 30.0% | |
| CTGATACCATGTTGAAATTT+GGG | + | chr4_4:77079892-77079911 | Msa0704610:intron | 30.0% | |
| TGATACCATGTTGAAATTTG+GGG | + | chr4_4:77079893-77079912 | Msa0704610:intron | 30.0% | |
| CTCTTGAGAAGAGTTTATAA+AGG | - | chr4_4:77079966-77079985 | None:intergenic | 30.0% | |
| ! | GAAGAAATCTTTAAGTATCG+TGG | - | chr4_4:77080035-77080054 | None:intergenic | 30.0% |
| GGCAAAAAGATTAAATGCAA+TGG | - | chr4_4:77080063-77080082 | None:intergenic | 30.0% | |
| ! | TTAATCTTTTTGCCTCGTTT+AGG | + | chr4_4:77080069-77080088 | Msa0704610:intron | 30.0% |
| ! | TAATCTTTTTGCCTCGTTTA+GGG | + | chr4_4:77080070-77080089 | Msa0704610:intron | 30.0% |
| CAAACCCAATAAATTATGGT+CGG | + | chr4_4:77080154-77080173 | Msa0704610:CDS | 30.0% | |
| ! | TTCAGATACAATTTTTGCAG+GGG | - | chr4_4:77080297-77080316 | None:intergenic | 30.0% |
| !!! | GTGTCCCATATTTTTTATGT+TGG | + | chr4_4:77080322-77080341 | Msa0704610:intron | 30.0% |
| ATAATTTACTTTGCAGTTGG+TGG | + | chr4_4:77080466-77080485 | Msa0704610:intron | 30.0% | |
| !!! | GCTTTTTTCATTTAACAGTG+TGG | - | chr4_4:77080762-77080781 | None:intergenic | 30.0% |
| TCAGATACAAGAGTAATCAA+GGG | - | chr4_4:77081101-77081120 | None:intergenic | 30.0% | |
| ATCAGATACAAGAGTAATCA+AGG | - | chr4_4:77081102-77081121 | None:intergenic | 30.0% | |
| ! | GAATGAATTTGGTTCACAAT+TGG | - | chr4_4:77081239-77081258 | None:intergenic | 30.0% |
| CGAAACAATTGGAATGAATT+TGG | - | chr4_4:77081250-77081269 | None:intergenic | 30.0% | |
| TTTCATGGAAACGAAACAAT+TGG | - | chr4_4:77081261-77081280 | None:intergenic | 30.0% | |
| TAGATAAAAGATTGAACGCA+TGG | - | chr4_4:77081550-77081569 | None:intergenic | 30.0% | |
| TTAATGTATAAGAGAAACGC+TGG | - | chr4_4:77081965-77081984 | None:intergenic | 30.0% | |
| !!! | TGTTCGGTTCGTGTTTTTTT+AGG | - | chr4_4:77077504-77077523 | None:intergenic | 35.0% |
| ! | CACATTGCAAGCTTGATTTT+GGG | - | chr4_4:77077819-77077838 | None:intergenic | 35.0% |
| CAAAATCAAGCTTGCAATGT+GGG | + | chr4_4:77077818-77077837 | Msa0704610:intron | 35.0% | |
| GCTTGTGTATAAGCTAACAA+AGG | - | chr4_4:77077918-77077937 | None:intergenic | 35.0% | |
| ! | TCTCCGATTGTGGATTTTTA+TGG | + | chr4_4:77078033-77078052 | Msa0704610:intron | 35.0% |
| GATATTAGATCCAAATTCGG+CGG | - | chr4_4:77078128-77078147 | None:intergenic | 35.0% | |
| TTTGTTTCACATGCTTTCAC+TGG | + | chr4_4:77078534-77078553 | Msa0704610:intron | 35.0% | |
| ! | TAGAGTTTTTGTAATGCCAC+AGG | + | chr4_4:77078796-77078815 | Msa0704610:intron | 35.0% |
| CCCACAATTACTTTAATCTG+TGG | + | chr4_4:77078819-77078838 | Msa0704610:intron | 35.0% | |
| TGATGATATAAAAGGCTGGT+TGG | + | chr4_4:77078950-77078969 | Msa0704610:intron | 35.0% | |
| ! | ATAAAAGGCTGGTTGGTTAA+TGG | + | chr4_4:77078957-77078976 | Msa0704610:intron | 35.0% |
| GCACAAGATATATCAGATTC+AGG | - | chr4_4:77079103-77079122 | None:intergenic | 35.0% | |
| GAATCTGATATATCTTGTGC+AGG | + | chr4_4:77079103-77079122 | Msa0704610:CDS | 35.0% | |
| ! | TTACGTGTGACTAATGGTTT+TGG | + | chr4_4:77079128-77079147 | Msa0704610:CDS | 35.0% |
| ! | TACGTGTGACTAATGGTTTT+GGG | + | chr4_4:77079129-77079148 | Msa0704610:CDS | 35.0% |
| AGTAGTTATTCAGCGAACAA+AGG | - | chr4_4:77079360-77079379 | None:intergenic | 35.0% | |
| !! | TTGTGTTTTTACAGTCCAGT+TGG | + | chr4_4:77079384-77079403 | Msa0704610:intron | 35.0% |
| AAGCGTATAAGTTCATACAG+AGG | - | chr4_4:77079533-77079552 | None:intergenic | 35.0% | |
| AAATACTGTAGTGTAGAACC+AGG | + | chr4_4:77079590-77079609 | Msa0704610:intron | 35.0% | |
| TAACGTCGTGTTGAAATTTG+GGG | + | chr4_4:77079686-77079705 | Msa0704610:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr4_4:77079710-77079729 | Msa0704610:intron | 35.0% | |
| GAGAAGAGTTTACAAAGATG+AGG | - | chr4_4:77079754-77079773 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | + | chr4_4:77079710-77079729 | Msa0704610:intron | 35.0% | |
| GAGAAGAGTTTATAAAGGTG+AGG | - | chr4_4:77079961-77079980 | None:intergenic | 35.0% | |
| ! | TTCTTTTTATTGCAGTGCCA+TGG | + | chr4_4:77080121-77080140 | Msa0704610:intron | 35.0% |
| ATGGCCGACCATAATTTATT+GGG | - | chr4_4:77080161-77080180 | None:intergenic | 35.0% | |
| ! | TCAGATACAATTTTTGCAGG+GGG | - | chr4_4:77080296-77080315 | None:intergenic | 35.0% |
| ! | TTCTTTGCTATATCTTGCAG+TGG | + | chr4_4:77080552-77080571 | Msa0704610:intron | 35.0% |
| AGGTTCGAAAGAAATCAAGA+GGG | - | chr4_4:77080802-77080821 | None:intergenic | 35.0% | |
| AAGGTTCGAAAGAAATCAAG+AGG | - | chr4_4:77080803-77080822 | None:intergenic | 35.0% | |
| CAGTACCTACAAATGAATAC+TGG | + | chr4_4:77080920-77080939 | Msa0704610:intron | 35.0% | |
| CAGATACAAGAGTAATCAAG+GGG | - | chr4_4:77081100-77081119 | None:intergenic | 35.0% | |
| ! | TAAACTCCTTTAGTTCACAG+TGG | - | chr4_4:77081204-77081223 | None:intergenic | 35.0% |
| CTGTGAACTAAAGGAGTTTA+TGG | + | chr4_4:77081204-77081223 | Msa0704610:intron | 35.0% | |
| !!! | ACTGTTTTGGCATTTAGAGT+AGG | - | chr4_4:77081393-77081412 | None:intergenic | 35.0% |
| TGATTCATGTTCCTTTCAAG+AGG | - | chr4_4:77081765-77081784 | None:intergenic | 35.0% | |
| CTCTTCATCACTATTGTCTA+TGG | - | chr4_4:77081793-77081812 | None:intergenic | 35.0% | |
| AATTGTTTGCGAGAGAGAGA+TGG | + | chr4_4:77077567-77077586 | Msa0704610:exon | 40.0% | |
| ATTGTTTGCGAGAGAGAGAT+GGG | + | chr4_4:77077568-77077587 | Msa0704610:exon | 40.0% | |
| TTTCGTTGTCTAGTGAGAGT+TGG | - | chr4_4:77077660-77077679 | None:intergenic | 40.0% | |
| GAAAATCAAAGCTGCGTTCA+AGG | + | chr4_4:77077676-77077695 | Msa0704610:CDS | 40.0% | |
| TCTTCATTATCACCCTCACA+AGG | - | chr4_4:77077777-77077796 | None:intergenic | 40.0% | |
| ! | GGGTGATAATGAAGAATCAG+AGG | + | chr4_4:77077782-77077801 | Msa0704610:intron | 40.0% |
| ! | CCACATTGCAAGCTTGATTT+TGG | - | chr4_4:77077820-77077839 | None:intergenic | 40.0% |
| CCAAAATCAAGCTTGCAATG+TGG | + | chr4_4:77077817-77077836 | Msa0704610:intron | 40.0% | |
| ! | ACGCTAAAGTAAGGCTTGTT+TGG | - | chr4_4:77077991-77078010 | None:intergenic | 40.0% |
| ACAATCGGAGATACTCTTAG+AGG | - | chr4_4:77078024-77078043 | None:intergenic | 40.0% | |
| !! | TCTAAGAGTATCTCCGATTG+TGG | + | chr4_4:77078023-77078042 | Msa0704610:intron | 40.0% |
| TAGAGTGGGAATAGTGGTTA+CGG | - | chr4_4:77078074-77078093 | None:intergenic | 40.0% | |
| TGCTTTCACTGGAGTAATCT+TGG | + | chr4_4:77078545-77078564 | Msa0704610:intron | 40.0% | |
| GCTTTCACTGGAGTAATCTT+GGG | + | chr4_4:77078546-77078565 | Msa0704610:intron | 40.0% | |
| ! | TGAAGTATGAAGAGGCATAG+AGG | + | chr4_4:77078656-77078675 | Msa0704610:intron | 40.0% |
| ! | ATATGGAGGAAGCCTTTTGA+GGG | + | chr4_4:77078719-77078738 | Msa0704610:intron | 40.0% |
| TTAAAGTAATTGTGGGCCTG+TGG | - | chr4_4:77078815-77078834 | None:intergenic | 40.0% | |
| !! | ACGTGTGACTAATGGTTTTG+GGG | + | chr4_4:77079130-77079149 | Msa0704610:CDS | 40.0% |
| !!! | GTTTTGGGGGAATTGCTTTA+AGG | + | chr4_4:77079144-77079163 | Msa0704610:CDS | 40.0% |
| !! | GGGAATTGCTTTAAGGTACT+TGG | + | chr4_4:77079151-77079170 | Msa0704610:intron | 40.0% |
| AACTTCACAGCTAGACGAAA+TGG | + | chr4_4:77079241-77079260 | Msa0704610:intron | 40.0% | |
| ACTTCACAGCTAGACGAAAT+GGG | + | chr4_4:77079242-77079261 | Msa0704610:intron | 40.0% | |
| CAACAGCCAATCCTTTATTC+TGG | - | chr4_4:77079446-77079465 | None:intergenic | 40.0% | |
| !! | GAATAAAGGATTGGCTGTTG+TGG | + | chr4_4:77079446-77079465 | Msa0704610:CDS | 40.0% |
| TATAAGTTCATACAGAGGCG+AGG | - | chr4_4:77079528-77079547 | None:intergenic | 40.0% | |
| TAGAACCAGGTTGTCAATAG+CGG | + | chr4_4:77079603-77079622 | Msa0704610:intron | 40.0% | |
| ACGTTATTGCCAGATAGTAG+CGG | - | chr4_4:77079672-77079691 | None:intergenic | 40.0% | |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | - | chr4_4:77079712-77079731 | None:intergenic | 40.0% |
| ! | AGAGTCTTATCTATCCGATG+CGG | + | chr4_4:77079775-77079794 | Msa0704610:intron | 40.0% |
| ! | CTTGGTGCATGAATAGGTTT+AGG | + | chr4_4:77079847-77079866 | Msa0704610:intron | 40.0% |
| TCAGAGCTTGTCGAATTCAA+GGG | - | chr4_4:77079876-77079895 | None:intergenic | 40.0% | |
| ATCAGAGCTTGTCGAATTCA+AGG | - | chr4_4:77079877-77079896 | None:intergenic | 40.0% | |
| TTAGGCCCCAAATTTCAACA+TGG | - | chr4_4:77079694-77079713 | None:intergenic | 40.0% | |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | - | chr4_4:77079712-77079731 | None:intergenic | 40.0% |
| ! | AGAGTCTTATCTATCCGATG+TGG | + | chr4_4:77079775-77079794 | Msa0704610:intron | 40.0% |
| GCGGCAAACCCAATAAATTA+TGG | + | chr4_4:77080150-77080169 | Msa0704610:CDS | 40.0% | |
| CATGGCCGACCATAATTTAT+TGG | - | chr4_4:77080162-77080181 | None:intergenic | 40.0% | |
| TCTACACAAGATAGCTGACA+TGG | - | chr4_4:77080180-77080199 | None:intergenic | 40.0% | |
| ATGTCAGCTATCTTGTGTAG+AGG | + | chr4_4:77080179-77080198 | Msa0704610:CDS | 40.0% | |
| TGTTTGTGTACAGCACATTG+CGG | - | chr4_4:77080374-77080393 | None:intergenic | 40.0% | |
| GAAACAGCAAATCTGTTGCT+TGG | + | chr4_4:77080582-77080601 | Msa0704610:CDS | 40.0% | |
| ! | TGTTGCTTGGCAAGTTTAAC+TGG | + | chr4_4:77080595-77080614 | Msa0704610:CDS | 40.0% |
| GTTGCTTGGCAAGTTTAACT+GGG | + | chr4_4:77080596-77080615 | Msa0704610:CDS | 40.0% | |
| TTGCTTGGCAAGTTTAACTG+GGG | + | chr4_4:77080597-77080616 | Msa0704610:CDS | 40.0% | |
| AAAGAAATCAAGAGGGACTC+TGG | - | chr4_4:77080795-77080814 | None:intergenic | 40.0% | |
| TTCATGGCTACATACAGAGA+TGG | - | chr4_4:77080954-77080973 | None:intergenic | 40.0% | |
| CCTAACAATCATAGCTAGTG+AGG | - | chr4_4:77081050-77081069 | None:intergenic | 40.0% | |
| CCTCACTAGCTATGATTGTT+AGG | + | chr4_4:77081047-77081066 | Msa0704610:intron | 40.0% | |
| GTACAGTGAAATTGTGTGCT+AGG | - | chr4_4:77081161-77081180 | None:intergenic | 40.0% | |
| GTGAAACCACTGTGAACTAA+AGG | + | chr4_4:77081195-77081214 | Msa0704610:intron | 40.0% | |
| CATGTTAGACACGGATTTCA+TGG | - | chr4_4:77081276-77081295 | None:intergenic | 40.0% | |
| CCTTCAGTAATTCCCTGTAT+TGG | - | chr4_4:77081370-77081389 | None:intergenic | 40.0% | |
| CCAATACAGGGAATTACTGA+AGG | + | chr4_4:77081367-77081386 | Msa0704610:intron | 40.0% | |
| !! | CTATTTTACACGGGGTGTTA+TGG | + | chr4_4:77081508-77081527 | Msa0704610:intron | 40.0% |
| !!! | TTTTTTCCTCCTATGCTGCA+TGG | + | chr4_4:77081674-77081693 | Msa0704610:intron | 40.0% |
| AACTCTTCCGATTCTGATGA+TGG | + | chr4_4:77081732-77081751 | Msa0704610:CDS | 40.0% | |
| ACTCTTCCGATTCTGATGAT+GGG | + | chr4_4:77081733-77081752 | Msa0704610:CDS | 40.0% | |
| TTCATGTTCCTTTCAAGAGG+TGG | - | chr4_4:77081762-77081781 | None:intergenic | 40.0% | |
| CTGCGATACTGGAATCAATA+TGG | + | chr4_4:77081862-77081881 | Msa0704610:three_prime_UTR | 40.0% | |
| ! | ACATGTATTTTCCCTCTGTG+AGG | + | chr4_4:77082026-77082045 | Msa0704610:three_prime_UTR | 40.0% |
| GACTGGATTGAGCATGATTG+GGG | - | chr4_4:77077630-77077649 | None:intergenic | 45.0% | |
| CGACTGGATTGAGCATGATT+GGG | - | chr4_4:77077631-77077650 | None:intergenic | 45.0% | |
| TCGACTGGATTGAGCATGAT+TGG | - | chr4_4:77077632-77077651 | None:intergenic | 45.0% | |
| TCTAACTGCAGAACCTTGTG+AGG | + | chr4_4:77077761-77077780 | Msa0704610:intron | 45.0% | |
| CTAACTGCAGAACCTTGTGA+GGG | + | chr4_4:77077762-77077781 | Msa0704610:intron | 45.0% | |
| GGAGGCTAAACGCTAAAGTA+AGG | - | chr4_4:77078000-77078019 | None:intergenic | 45.0% | |
| ATCGGAGATACTCTTAGAGG+AGG | - | chr4_4:77078021-77078040 | None:intergenic | 45.0% | |
| GTGGTTACGGAACCAACTTT+GGG | - | chr4_4:77078061-77078080 | None:intergenic | 45.0% | |
| AGTGGTTACGGAACCAACTT+TGG | - | chr4_4:77078062-77078081 | None:intergenic | 45.0% | |
| AACCACTATTCCCACTCTAG+AGG | + | chr4_4:77078075-77078094 | Msa0704610:intron | 45.0% | |
| !! | GGATTTAGCTCCTCTAGAGT+GGG | - | chr4_4:77078088-77078107 | None:intergenic | 45.0% |
| ! | AGGATTTAGCTCCTCTAGAG+TGG | - | chr4_4:77078089-77078108 | None:intergenic | 45.0% |
| GTATACATCACCGCCGAATT+TGG | + | chr4_4:77078115-77078134 | Msa0704610:CDS | 45.0% | |
| ! | GGCTGTTGACACAGGATTTT+GGG | + | chr4_4:77078161-77078180 | Msa0704610:CDS | 45.0% |
| ! | TGTGATGCCAAAAAGTGCAC+CGG | + | chr4_4:77078187-77078206 | Msa0704610:CDS | 45.0% |
| GGACGATCACATTGGATCAA+AGG | + | chr4_4:77078498-77078517 | Msa0704610:intron | 45.0% | |
| ! | CATATGGAGGAAGCCTTTTG+AGG | + | chr4_4:77078718-77078737 | Msa0704610:intron | 45.0% |
| CAGGAGTTACGTGTGACTAA+TGG | + | chr4_4:77079122-77079141 | Msa0704610:CDS | 45.0% | |
| !!! | CGTGTGACTAATGGTTTTGG+GGG | + | chr4_4:77079131-77079150 | Msa0704610:CDS | 45.0% |
| GAGACACATTGCTTTCCAAC+TGG | - | chr4_4:77079402-77079421 | None:intergenic | 45.0% | |
| ACATGGTACCACTATTGCAG+CGG | + | chr4_4:77079626-77079645 | Msa0704610:intron | 45.0% | |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr4_4:77079722-77079741 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr4_4:77079719-77079738 | Msa0704610:intron | 45.0% |
| ! | GAGTCTTATCTATCCGATGC+GGG | + | chr4_4:77079776-77079795 | Msa0704610:intron | 45.0% |
| !! | TTTGGGCTTGGTGCATGAAT+AGG | + | chr4_4:77079841-77079860 | Msa0704610:intron | 45.0% |
| GGTGCATGAATAGGTTTAGG+CGG | + | chr4_4:77079850-77079869 | Msa0704610:intron | 45.0% | |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr4_4:77079722-77079741 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr4_4:77079719-77079738 | Msa0704610:intron | 45.0% |
| TATCTATCCGATGTGGCACT+TGG | + | chr4_4:77079989-77080008 | Msa0704610:intron | 45.0% | |
| ATCTATCCGATGTGGCACTT+GGG | + | chr4_4:77079990-77080009 | Msa0704610:intron | 45.0% | |
| GAAAAACCCAAGTGCCACAT+CGG | - | chr4_4:77079999-77080018 | None:intergenic | 45.0% | |
| TATTGTCAAAGCAGCAGCCA+AGG | - | chr4_4:77080205-77080224 | None:intergenic | 45.0% | |
| !! | TGGCTGCTGCTTTGACAATA+TGG | + | chr4_4:77080205-77080224 | Msa0704610:CDS | 45.0% |
| ! | TTTTGCAGGGGGTGAATTGT+AGG | - | chr4_4:77080285-77080304 | None:intergenic | 45.0% |
| GTTTGTGTACAGCACATTGC+GGG | - | chr4_4:77080373-77080392 | None:intergenic | 45.0% | |
| GAGTAATCAAGGGGCTAATC+AGG | - | chr4_4:77081091-77081110 | None:intergenic | 45.0% | |
| GGTGAATCGCATGTTAGACA+CGG | - | chr4_4:77081285-77081304 | None:intergenic | 45.0% | |
| TCACTATCAGTAGGAGCCTT+TGG | - | chr4_4:77081467-77081486 | None:intergenic | 45.0% | |
| ! | AAGGCTCCTACTGATAGTGA+AGG | + | chr4_4:77081467-77081486 | Msa0704610:CDS | 45.0% |
| CACAGACCTTCACTATCAGT+AGG | - | chr4_4:77081476-77081495 | None:intergenic | 45.0% | |
| ! | GGGGTGTTATGGTATGAAGT+TGG | + | chr4_4:77081519-77081538 | Msa0704610:intron | 45.0% |
| GTTGCATACATTGTCTGTGC+AGG | + | chr4_4:77081588-77081607 | Msa0704610:intron | 45.0% | |
| TAACAACTGCCATGCAGCAT+AGG | - | chr4_4:77081686-77081705 | None:intergenic | 45.0% | |
| TATGCTGCATGGCAGTTGTT+AGG | + | chr4_4:77081685-77081704 | Msa0704610:intron | 45.0% | |
| TGGAAGCCCATCATCAGAAT+CGG | - | chr4_4:77081742-77081761 | None:intergenic | 45.0% | |
| TTGATTCCAGTATCGCAGCA+TGG | - | chr4_4:77081860-77081879 | None:intergenic | 45.0% | |
| AGCTGAGATATGCATCGTCT+TGG | + | chr4_4:77081925-77081944 | Msa0704610:three_prime_UTR | 45.0% | |
| GCTGAGATATGCATCGTCTT+GGG | + | chr4_4:77081926-77081945 | Msa0704610:three_prime_UTR | 45.0% | |
| AAACATCAAGGCCTCACAGA+GGG | - | chr4_4:77082040-77082059 | None:intergenic | 45.0% | |
| ! | TGAGAGTTGGTTGTGTCGAC+TGG | - | chr4_4:77077647-77077666 | None:intergenic | 50.0% |
| GGAGATACTCTTAGAGGAGG+AGG | - | chr4_4:77078018-77078037 | None:intergenic | 50.0% | |
| !! | CTCCTCTAGAGTGGGAATAG+TGG | - | chr4_4:77078080-77078099 | None:intergenic | 50.0% |
| GCGGTGATGTATACAGTGGT+AGG | - | chr4_4:77078109-77078128 | None:intergenic | 50.0% | |
| TTCGGCGGTGATGTATACAG+TGG | - | chr4_4:77078113-77078132 | None:intergenic | 50.0% | |
| TGTCATTGGGCTGTTGACAC+AGG | + | chr4_4:77078153-77078172 | Msa0704610:CDS | 50.0% | |
| ! | GGGCTGTTGACACAGGATTT+TGG | + | chr4_4:77078160-77078179 | Msa0704610:CDS | 50.0% |
| ! | GTGATGCCAAAAAGTGCACC+GGG | + | chr4_4:77078188-77078207 | Msa0704610:CDS | 50.0% |
| CATGTTGCCTTGCCCTCAAA+AGG | - | chr4_4:77078734-77078753 | None:intergenic | 50.0% | |
| CATGTCCGCTATTGACAACC+TGG | - | chr4_4:77079611-77079630 | None:intergenic | 50.0% | |
| !! | CAGGTTGTCAATAGCGGACA+TGG | + | chr4_4:77079609-77079628 | Msa0704610:intron | 50.0% |
| GTACCACTATTGCAGCGGTT+TGG | + | chr4_4:77079631-77079650 | Msa0704610:intron | 50.0% | |
| AAGCCAAACCGCTGCAATAG+TGG | - | chr4_4:77079637-77079656 | None:intergenic | 50.0% | |
| !! | TATTGCAGCGGTTTGGCTTG+TGG | + | chr4_4:77079638-77079657 | Msa0704610:intron | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | + | chr4_4:77079724-77079743 | Msa0704610:intron | 50.0% |
| GCAATCCTCACCTTACAAGC+CGG | - | chr4_4:77079732-77079751 | None:intergenic | 50.0% | |
| TATCTATCCGATGCGGGACT+TGG | + | chr4_4:77079782-77079801 | Msa0704610:intron | 50.0% | |
| ATCTATCCGATGCGGGACTT+GGG | + | chr4_4:77079783-77079802 | Msa0704610:intron | 50.0% | |
| GAAAAACCCAAGTCCCGCAT+CGG | - | chr4_4:77079792-77079811 | None:intergenic | 50.0% | |
| !! | CACCAAGCCCAAAGAGTGTT+GGG | - | chr4_4:77079834-77079853 | None:intergenic | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | + | chr4_4:77079724-77079743 | Msa0704610:intron | 50.0% |
| GCAATCCTCACCTTACAAGC+CGG | - | chr4_4:77079732-77079751 | None:intergenic | 50.0% | |
| GTATCGTGGTGCGACGTATT+GGG | - | chr4_4:77080021-77080040 | None:intergenic | 50.0% | |
| AGTATCGTGGTGCGACGTAT+TGG | - | chr4_4:77080022-77080041 | None:intergenic | 50.0% | |
| GATTGAGGCAACCCTAAACG+AGG | - | chr4_4:77080084-77080103 | None:intergenic | 50.0% | |
| GCTATCTTGTGTAGAGGCCT+TGG | + | chr4_4:77080185-77080204 | Msa0704610:CDS | 50.0% | |
| AGGGGCTAATCAGGAGCTAA+TGG | - | chr4_4:77081082-77081101 | None:intergenic | 50.0% | |
| ATGGGCTTCCACCTCTTGAA+AGG | + | chr4_4:77081751-77081770 | Msa0704610:CDS | 50.0% | |
| CTCTAACCATGCTGCGATAC+TGG | + | chr4_4:77081851-77081870 | Msa0704610:three_prime_UTR | 50.0% | |
| GAAACATCAAGGCCTCACAG+AGG | - | chr4_4:77082041-77082060 | None:intergenic | 50.0% | |
| GTTTGCGAGAGAGAGATGGG+CGG | + | chr4_4:77077571-77077590 | Msa0704610:exon | 55.0% | |
| CAGTCTTGAAAGCTTGCGCC+CGG | - | chr4_4:77078209-77078228 | None:intergenic | 55.0% | |
| GGGCGCAAGCTTTCAAGACT+GGG | + | chr4_4:77078208-77078227 | Msa0704610:CDS | 55.0% | |
| !! | GAGGAAGCCTTTTGAGGGCA+AGG | + | chr4_4:77078724-77078743 | Msa0704610:intron | 55.0% |
| ! | TGGCTGTTGTGGATTGCTCG+TGG | + | chr4_4:77079457-77079476 | Msa0704610:CDS | 55.0% |
| ! | GGCTGTTGTGGATTGCTCGT+GGG | + | chr4_4:77079458-77079477 | Msa0704610:CDS | 55.0% |
| GCGCAGCGCAACTTCACAAA+AGG | - | chr4_4:77079501-77079520 | None:intergenic | 55.0% | |
| !! | AAAGAGTGTTGGGCGTGAGG+GGG | - | chr4_4:77079824-77079843 | None:intergenic | 55.0% |
| !! | CAAAGAGTGTTGGGCGTGAG+GGG | - | chr4_4:77079825-77079844 | None:intergenic | 55.0% |
| !! | CCAAAGAGTGTTGGGCGTGA+GGG | - | chr4_4:77079826-77079845 | None:intergenic | 55.0% |
| CCTCACGCCCAACACTCTTT+GGG | + | chr4_4:77079824-77079843 | Msa0704610:intron | 55.0% | |
| ! | GCACCAAGCCCAAAGAGTGT+TGG | - | chr4_4:77079835-77079854 | None:intergenic | 55.0% |
| ! | TGCAGTGCCATGGCTTGTAG+CGG | + | chr4_4:77080131-77080150 | Msa0704610:intron | 55.0% |
| TTGGCTATCACAAGCGCGTC+AGG | + | chr4_4:77081439-77081458 | Msa0704610:CDS | 55.0% | |
| ACAAGCGCGTCAGGTTCCAA+AGG | + | chr4_4:77081448-77081467 | Msa0704610:CDS | 55.0% | |
| CAACTGCCATGCAGCATAGG+AGG | - | chr4_4:77081683-77081702 | None:intergenic | 55.0% | |
| ! | CTTGCGCCCGGTGCACTTTT+TGG | - | chr4_4:77078197-77078216 | None:intergenic | 60.0% |
| CGGGCGCAAGCTTTCAAGAC+TGG | + | chr4_4:77078207-77078226 | Msa0704610:CDS | 60.0% | |
| !! | CGGTTTGGCTTGTGGTCGAC+TGG | + | chr4_4:77079646-77079665 | Msa0704610:intron | 60.0% |
| ! | GTCGACTGGCCGCTACTATC+TGG | + | chr4_4:77079660-77079679 | Msa0704610:intron | 60.0% |
| !! | AAGAGTGTTGGGCGTGAGGG+GGG | - | chr4_4:77079823-77079842 | None:intergenic | 60.0% |
| CCCTCACGCCCAACACTCTT+TGG | + | chr4_4:77079823-77079842 | Msa0704610:intron | 60.0% | |
| !! | CCCAAAGAGTGTTGGGCGTG+AGG | - | chr4_4:77079827-77079846 | None:intergenic | 60.0% |
| CGCCCAACACTCTTTGGGCT+TGG | + | chr4_4:77079829-77079848 | Msa0704610:intron | 60.0% | |
| GGGTTTGCCGCTACAAGCCA+TGG | - | chr4_4:77080141-77080160 | None:intergenic | 60.0% | |
| ! | GGGCGTGAGGGGGGTGTATT+GGG | - | chr4_4:77079814-77079833 | None:intergenic | 65.0% |
| ! | TGGGCGTGAGGGGGGTGTAT+TGG | - | chr4_4:77079815-77079834 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77077483 | 77082165 | 77077483 | ID=Msa0704610;Name=Msa0704610 |
| chr4_4 | mRNA | 77077483 | 77082165 | 77077483 | ID=Msa0704610-mRNA-1;Parent=Msa0704610;Name=Msa0704610-mRNA-1;_AED=0.11;_eAED=0.11;_QI=103|0.71|0.75|1|0.85|0.87|8|344|288 |
| chr4_4 | exon | 77077483 | 77077697 | 77077483 | ID=Msa0704610-mRNA-1:exon:24318;Parent=Msa0704610-mRNA-1 |
| chr4_4 | exon | 77078095 | 77078244 | 77078095 | ID=Msa0704610-mRNA-1:exon:24319;Parent=Msa0704610-mRNA-1 |
| chr4_4 | exon | 77079096 | 77079165 | 77079096 | ID=Msa0704610-mRNA-1:exon:24320;Parent=Msa0704610-mRNA-1 |
| chr4_4 | exon | 77079398 | 77079534 | 77079398 | ID=Msa0704610-mRNA-1:exon:24321;Parent=Msa0704610-mRNA-1 |
| chr4_4 | exon | 77080136 | 77080226 | 77080136 | ID=Msa0704610-mRNA-1:exon:24322;Parent=Msa0704610-mRNA-1 |
| chr4_4 | exon | 77080572 | 77080643 | 77080572 | ID=Msa0704610-mRNA-1:exon:24323;Parent=Msa0704610-mRNA-1 |
| chr4_4 | exon | 77081376 | 77081488 | 77081376 | ID=Msa0704610-mRNA-1:exon:24324;Parent=Msa0704610-mRNA-1 |
| chr4_4 | exon | 77081700 | 77082165 | 77081700 | ID=Msa0704610-mRNA-1:exon:24325;Parent=Msa0704610-mRNA-1 |
| chr4_4 | five_prime_UTR | 77077483 | 77077585 | 77077483 | ID=Msa0704610-mRNA-1:five_prime_utr;Parent=Msa0704610-mRNA-1 |
| chr4_4 | CDS | 77077586 | 77077697 | 77077586 | ID=Msa0704610-mRNA-1:cds;Parent=Msa0704610-mRNA-1 |
| chr4_4 | CDS | 77078095 | 77078244 | 77078095 | ID=Msa0704610-mRNA-1:cds;Parent=Msa0704610-mRNA-1 |
| chr4_4 | CDS | 77079096 | 77079165 | 77079096 | ID=Msa0704610-mRNA-1:cds;Parent=Msa0704610-mRNA-1 |
| chr4_4 | CDS | 77079398 | 77079534 | 77079398 | ID=Msa0704610-mRNA-1:cds;Parent=Msa0704610-mRNA-1 |
| chr4_4 | CDS | 77080136 | 77080226 | 77080136 | ID=Msa0704610-mRNA-1:cds;Parent=Msa0704610-mRNA-1 |
| chr4_4 | CDS | 77080572 | 77080643 | 77080572 | ID=Msa0704610-mRNA-1:cds;Parent=Msa0704610-mRNA-1 |
| chr4_4 | CDS | 77081376 | 77081488 | 77081376 | ID=Msa0704610-mRNA-1:cds;Parent=Msa0704610-mRNA-1 |
| chr4_4 | CDS | 77081700 | 77081821 | 77081700 | ID=Msa0704610-mRNA-1:cds;Parent=Msa0704610-mRNA-1 |
| chr4_4 | three_prime_UTR | 77081822 | 77082165 | 77081822 | ID=Msa0704610-mRNA-1:three_prime_utr;Parent=Msa0704610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
