AlfalfaGEDB | Msa0581070

M. sativa cultivar zhongmu-4 / Msa0581070

KEGG: K12890
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363
PFAM: PF10200.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0581070	XP_024625354.1	100.000	82	0	0	1	82	1	82	1.02e-54	174

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0581070	sp\|Q9LZI6\|NDS5B_ARATH	84.146	82	13	0	1	82	1	82	1.14e-47	149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0581070	A0A396HCE7	100.000	82	0	0	1	82	1	82	4.88e-55	174

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0581070	0.854614	1.094504e-61	-8.615850e-47
Msa0002380	Msa0581070	0.803912	2.779482e-49	-8.615850e-47
Msa0002490	Msa0581070	0.820714	5.926630e-53	-8.615850e-47
Msa0004540	Msa0581070	0.832120	1.132904e-55	-8.615850e-47
Msa0004950	Msa0581070	0.829218	5.821085e-55	-8.615850e-47
Msa0004980	Msa0581070	0.840034	1.108334e-57	-8.615850e-47
Msa0006880	Msa0581070	0.852455	4.566538e-61	-8.615850e-47
Msa0007850	Msa0581070	0.814582	1.431838e-51	-8.615850e-47
Msa0008090	Msa0581070	0.845126	4.932021e-59	-8.615850e-47
Msa0008410	Msa0581070	0.877916	4.279491e-69	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0581070	MtrunA17_Chr7g0269341	100.000	82	0	0	1	82	1	82	9.39e-59	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0581070	AT3G62790.1	84.146	82	13	0	1	82	1	82	1.16e-48	149
Msa0581070	AT2G47690.1	84.146	82	13	0	1	82	36	117	5.51e-48	148
Msa0581070	AT2G47690.2	73.913	69	13	1	1	69	36	99	4.60e-31	105
Msa0581070	AT2G47690.3	92.000	50	4	0	1	50	36	85	2.50e-30	102

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Find 46 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCCTGCCCGCCGA+AGG	0.526574	4_1:-86411020	None:intergenic
AAAGAAGCCTGCCCGCCGAA+GGG	0.592857	4_1:-86411019	None:intergenic
AAATTGTTTGTAATTCTGCT+TGG	0.480988	4_1:+86410970	Msa0581070:three_prime_UTR
AAGAAACCGGATTTACAAGG+AGG	0.717521	4_1:+86410832	Msa0581070:CDS
AAGGTACCTCTTTGGAATGG+TGG	0.557593	4_1:-86407977	None:intergenic
AAGGTCGTTGCTACGATTTC+TGG	0.156291	4_1:+86407874	Msa0581070:CDS
ACGAAGAAACCGGATTTACA+AGG	0.549458	4_1:+86410829	Msa0581070:CDS
ACGAAGGAGAACACAATCTT+TGG	0.275115	4_1:-86407934	None:intergenic
ATAAGGTGAAGGTGAAGAAA+TGG	0.498353	4_1:+86407824	Msa0581070:exon
ATGCCTCCACCATTCCAAAG+AGG	0.652254	4_1:+86407971	Msa0581070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCCACAGTAAAACAAAATA+AGG	-	chr4_1:86408347-86408366	None:intergenic	30.0%
TTTACATCGAACAAAACAAC+AGG	-	chr4_1:86408480-86408499	None:intergenic	30.0%
CAGATGAGAAATAGTTAGAA+AGG	+	chr4_1:86408588-86408607	Msa0581070:intron	30.0%
AAACAAATAGCTTGAGAAGA+AGG	-	chr4_1:86408633-86408652	None:intergenic	30.0%
AAAAAATGATATGGGACTCA+CGG	-	chr4_1:86408684-86408703	None:intergenic	30.0%
GGTTAAACTATAATTGCTAC+AGG	-	chr4_1:86408876-86408895	None:intergenic	30.0%
TCAACCAATGAAAACAATAC+AGG	+	chr4_1:86408919-86408938	Msa0581070:intron	30.0%
CAACCAATGAAAACAATACA+GGG	+	chr4_1:86408920-86408939	Msa0581070:intron	30.0%
AATCTACATCAACCTTGATT+TGG	+	chr4_1:86409199-86409218	Msa0581070:intron	30.0%
AGTGAACTTGGAATTACAAT+GGG	+	chr4_1:86409258-86409277	Msa0581070:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	86407692	86411280	86407692	ID=Msa0581070;Name=Msa0581070
chr4_1	mRNA	86407692	86411280	86407692	ID=Msa0581070-mRNA-1;Parent=Msa0581070;Name=Msa0581070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=151\|1\|1\|1\|0\|1\|2\|358\|82
chr4_1	exon	86407692	86407992	86407692	ID=Msa0581070-mRNA-1:exon:31912;Parent=Msa0581070-mRNA-1
chr4_1	exon	86410824	86411280	86410824	ID=Msa0581070-mRNA-1:exon:31913;Parent=Msa0581070-mRNA-1
chr4_1	five_prime_UTR	86407692	86407842	86407692	ID=Msa0581070-mRNA-1:five_prime_utr;Parent=Msa0581070-mRNA-1
chr4_1	CDS	86407843	86407992	86407843	ID=Msa0581070-mRNA-1:cds;Parent=Msa0581070-mRNA-1
chr4_1	CDS	86410824	86410922	86410824	ID=Msa0581070-mRNA-1:cds;Parent=Msa0581070-mRNA-1
chr4_1	three_prime_UTR	86410923	86411280	86410923	ID=Msa0581070-mRNA-1:three_prime_utr;Parent=Msa0581070-mRNA-1

Gene Sequence	>Msa0581070 ATGGCGTCAGGTTGGGGAATCACTGGTAACAAAGGTCGTTGCTACGATTTCTGGATCGATTTCAGCGAGTGCATGTCTACTTGTAGAGAACCCAAAGATTGTGTTCTCCTTCGTGAAGATTACTTCGAATGCCTCCACCATTCCAAAGAGTTCCAACGAAGAAACCGGATTTACAAGGAGGAACAACGCAAACTAAGAGCTGCTGCCAGGAAAGGTCAAGATGACGGGAAAGTTGCTGAACATCATTAG
Protein sequence	>Msa0581070 MASGWGITGNKGRCYDFWIDFSECMSTCREPKDCVLLREDYFECLHHSKEFQRRNRIYKEEQRKLRAAARKGQDDGKVAEHH*