AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581070 MtrunA17_Chr7g0269341 100.000 82 0 0 1 82 1 82 9.39e-59 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581070 AT3G62790.1 84.146 82 13 0 1 82 1 82 1.16e-48 149
Msa0581070 AT2G47690.1 84.146 82 13 0 1 82 36 117 5.51e-48 148
Msa0581070 AT2G47690.2 73.913 69 13 1 1 69 36 99 4.60e-31 105
Msa0581070 AT2G47690.3 92.000 50 4 0 1 50 36 85 2.50e-30 102

Find 46 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAATTATGCAGTAAATTT+TGG 0.128901 4_1:+86411200 Msa0581070:three_prime_UTR
AAGGTCGTTGCTACGATTTC+TGG 0.156291 4_1:+86407874 Msa0581070:CDS
TCTAAAATTCTTGAGGTTAA+AGG 0.167984 4_1:+86411127 Msa0581070:three_prime_UTR
CCCGTCATCTTGACCTTTCC+TGG 0.181566 4_1:-86410879 None:intergenic
TGAACTATGCTGAGTTAATT+TGG 0.181969 4_1:+86411090 Msa0581070:three_prime_UTR
ACGAAGGAGAACACAATCTT+TGG 0.275115 4_1:-86407934 None:intergenic
GTGGTGGTAGTTTGGTAATT+TGG 0.292325 4_1:+86407718 Msa0581070:five_prime_UTR
GGGGATTGAAGGTACCTCTT+TGG 0.321852 4_1:-86407985 None:intergenic
TGAAAAGAGTGGTGGTAGTT+TGG 0.338848 4_1:+86407710 Msa0581070:five_prime_UTR
TCTCACCGATTTCTGCTTCC+AGG 0.341972 4_1:-86407783 None:intergenic
CGAGTTGAGCGAAAGAAATA+AGG 0.373675 4_1:+86407807 Msa0581070:five_prime_UTR
TGAAGAAATGGCGTCAGGTT+GGG 0.377961 4_1:+86407836 Msa0581070:exon
CGAAGGAGAACACAATCTTT+GGG 0.421263 4_1:-86407933 None:intergenic
GTTGTTCCTCCTTGTAAATC+CGG 0.426154 4_1:-86410838 None:intergenic
GTGTGAGCCCTTCGGCGGGC+AGG 0.428161 4_1:+86411012 Msa0581070:three_prime_UTR
TGCAGTTCCAACGAAGAAAC+CGG 0.439313 4_1:+86410819 Msa0581070:intron
TGTAAATCCGGTTTCTTCGT+TGG 0.454351 4_1:-86410826 None:intergenic
GAAGAAATGGCGTCAGGTTG+GGG 0.457573 4_1:+86407837 Msa0581070:exon
AAATTGTTTGTAATTCTGCT+TGG 0.480988 4_1:+86410970 Msa0581070:three_prime_UTR
TGTTACCTGGAAGCAGAAAT+CGG 0.481116 4_1:+86407778 Msa0581070:five_prime_UTR
ATAAGGTGAAGGTGAAGAAA+TGG 0.498353 4_1:+86407824 Msa0581070:exon
GCAAACTAAGAGCTGCTGCC+AGG 0.505591 4_1:+86410861 Msa0581070:CDS
GCGTCAGGTTGGGGAATCAC+TGG 0.513534 4_1:+86407846 Msa0581070:CDS
GAAGGTGAAGAAATGGCGTC+AGG 0.521379 4_1:+86407831 Msa0581070:exon
GTGAAGAAATGGCGTCAGGT+TGG 0.524493 4_1:+86407835 Msa0581070:exon
AAAAGAAGCCTGCCCGCCGA+AGG 0.526574 4_1:-86411020 None:intergenic
CGTTTGCTCTAAAATTCTTG+AGG 0.528421 4_1:+86411120 Msa0581070:three_prime_UTR
ACGAAGAAACCGGATTTACA+AGG 0.549458 4_1:+86410829 Msa0581070:CDS
CCAGGAAAGGTCAAGATGAC+GGG 0.551383 4_1:+86410879 Msa0581070:CDS
GCCAGGAAAGGTCAAGATGA+CGG 0.552182 4_1:+86410878 Msa0581070:CDS
CTAAGAGCTGCTGCCAGGAA+AGG 0.556365 4_1:+86410866 Msa0581070:CDS
AAGGTACCTCTTTGGAATGG+TGG 0.557593 4_1:-86407977 None:intergenic
TGACCTCCGAATTATTGCAC+AGG 0.568732 4_1:-86411044 None:intergenic
TAAGAAGACGAAGGTTGAGA+TGG 0.574526 4_1:+86407746 Msa0581070:five_prime_UTR
TTGAAGGTACCTCTTTGGAA+TGG 0.575212 4_1:-86407980 None:intergenic
GTACCTCTTTGGAATGGTGG+AGG 0.591122 4_1:-86407974 None:intergenic
AAAGAAGCCTGCCCGCCGAA+GGG 0.592857 4_1:-86411019 None:intergenic
TTCCCTGTGCAATAATTCGG+AGG 0.593205 4_1:+86411041 Msa0581070:three_prime_UTR
ATGGTTCAGAATTTGTTACC+TGG 0.593427 4_1:+86407765 Msa0581070:five_prime_UTR
GAGCGAAAGAAATAAGGTGA+AGG 0.624502 4_1:+86407813 Msa0581070:five_prime_UTR
TTGGCTTTGTAAGAAGACGA+AGG 0.644975 4_1:+86407737 Msa0581070:five_prime_UTR
TGGGGAATCACTGGTAACAA+AGG 0.650188 4_1:+86407855 Msa0581070:CDS
GACCTCCGAATTATTGCACA+GGG 0.651129 4_1:-86411043 None:intergenic
ATGCCTCCACCATTCCAAAG+AGG 0.652254 4_1:+86407971 Msa0581070:CDS
AAGAAACCGGATTTACAAGG+AGG 0.717521 4_1:+86410832 Msa0581070:CDS
ATTCGAAGTAATCTTCACGA+AGG 0.720124 4_1:-86407950 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTTAAATTAAACATTTA+AGG - chr4_1:86409285-86409304 None:intergenic 10.0%
!! AAAAGTAAAAGAAAGAAAAA+GGG - chr4_1:86408008-86408027 None:intergenic 15.0%
!! TAAAAGTAAAAGAAAGAAAA+AGG - chr4_1:86408009-86408028 None:intergenic 15.0%
!!! TTTTTTGTATATTGTTTAGA+TGG + chr4_1:86408418-86408437 Msa0581070:intron 15.0%
!! GTTAATTAAATATAGAGTAA+AGG + chr4_1:86408794-86408813 Msa0581070:intron 15.0%
!!! TTAGTTGATAACTTAATTAT+AGG - chr4_1:86409893-86409912 None:intergenic 15.0%
!!! AGTTGTTTTATGTTTTTTTA+AGG + chr4_1:86410674-86410693 Msa0581070:intron 15.0%
!!! GTTGTTTTATGTTTTTTTAA+GGG + chr4_1:86410675-86410694 Msa0581070:intron 15.0%
!!! TACAATAATTTGTTAACATA+TGG - chr4_1:86410749-86410768 None:intergenic 15.0%
!! GAAATATTCAATAAGAAAAA+AGG - chr4_1:86411250-86411269 None:intergenic 15.0%
!! AAAGTAAAAGAAAGAAAAAG+GGG - chr4_1:86408007-86408026 None:intergenic 20.0%
!! AGTAAAACAAAATAAGGTTT+GGG - chr4_1:86408341-86408360 None:intergenic 20.0%
!! AGGATGAAAAAAAATGATAT+GGG - chr4_1:86408692-86408711 None:intergenic 20.0%
!! AAGGATGAAAAAAAATGATA+TGG - chr4_1:86408693-86408712 None:intergenic 20.0%
!! TTAATTAACAGAAAATACGA+GGG - chr4_1:86408783-86408802 None:intergenic 20.0%
!! TTTAATTAACAGAAAATACG+AGG - chr4_1:86408784-86408803 None:intergenic 20.0%
!! TAAATTAACCACCATATTAT+TGG - chr4_1:86409427-86409446 None:intergenic 20.0%
!! ATAATATGGTGGTTAATTTA+TGG + chr4_1:86409427-86409446 Msa0581070:intron 20.0%
!! ACTTAATTATAGGAAGAAAA+AGG - chr4_1:86409883-86409902 None:intergenic 20.0%
!! TGGATAAAATATTATAGGAA+GGG - chr4_1:86410171-86410190 None:intergenic 20.0%
!! ATGGATAAAATATTATAGGA+AGG - chr4_1:86410172-86410191 None:intergenic 20.0%
!! CTTCATGGATAAAATATTAT+AGG - chr4_1:86410176-86410195 None:intergenic 20.0%
!!! CATAAAACAACTTTTTCTAT+CGG - chr4_1:86410666-86410685 None:intergenic 20.0%
!! ATCAACATTAGTCATTTATA+TGG - chr4_1:86410788-86410807 None:intergenic 20.0%
!!! GATGATTCTTTTTTATTTTG+AGG - chr4_1:86411161-86411180 None:intergenic 20.0%
!!! TGTAATTATGCAGTAAATTT+TGG + chr4_1:86411200-86411219 Msa0581070:three_prime_UTR 20.0%
! AATTGCAAAAATGAAAAGAG+TGG + chr4_1:86407699-86407718 Msa0581070:five_prime_UTR 25.0%
!!! TTTTGAAAAACGAAATCAAG+TGG - chr4_1:86408075-86408094 None:intergenic 25.0%
! CATTAATCTTCACGAAATTA+GGG - chr4_1:86408098-86408117 None:intergenic 25.0%
! TCATTAATCTTCACGAAATT+AGG - chr4_1:86408099-86408118 None:intergenic 25.0%
! TCTCTAACTAAGATAAATTG+AGG - chr4_1:86408148-86408167 None:intergenic 25.0%
! CAGTAAAACAAAATAAGGTT+TGG - chr4_1:86408342-86408361 None:intergenic 25.0%
!!! AACCTTATTTTGTTTTACTG+TGG + chr4_1:86408342-86408361 Msa0581070:intron 25.0%
!! ACTAGATTTTTCTCATATCA+AGG - chr4_1:86408555-86408574 None:intergenic 25.0%
!! AGAAAGGTATAATTGAAAAG+AGG + chr4_1:86408604-86408623 Msa0581070:intron 25.0%
!! GAAAGGTATAATTGAAAAGA+GGG + chr4_1:86408605-86408624 Msa0581070:intron 25.0%
!!! ATTTGTTTTCTCTCAATTTG+AGG + chr4_1:86408645-86408664 Msa0581070:intron 25.0%
!!! TTTGTTTTCTCTCAATTTGA+GGG + chr4_1:86408646-86408665 Msa0581070:intron 25.0%
! TAATTAACAGAAAATACGAG+GGG - chr4_1:86408782-86408801 None:intergenic 25.0%
! GTTAAACTATAATTGCTACA+GGG - chr4_1:86408875-86408894 None:intergenic 25.0%
! AATAGACTGAAATTGAATGT+AGG - chr4_1:86408897-86408916 None:intergenic 25.0%
! GAAAAATTGATACATGATGA+TGG + chr4_1:86409043-86409062 Msa0581070:intron 25.0%
! TATGATTCTCCAATAACTTA+CGG + chr4_1:86409364-86409383 Msa0581070:intron 25.0%
!! TGAGGTTATAATTTTTCATG+TGG + chr4_1:86409485-86409504 Msa0581070:intron 25.0%
! AGTTGACAAAAATTGAGTTA+TGG + chr4_1:86409734-86409753 Msa0581070:intron 25.0%
!! TTTTTCTTGTTACGTTTATC+TGG + chr4_1:86409786-86409805 Msa0581070:intron 25.0%
!!! TAAAGGTCTTTTAGCTTATT+TGG + chr4_1:86409539-86409558 Msa0581070:intron 25.0%
! TTATCAACTAATATTGCTCT+GGG + chr4_1:86409902-86409921 Msa0581070:intron 25.0%
! TTTATCCATGAAGTTTACTT+TGG + chr4_1:86410183-86410202 Msa0581070:intron 25.0%
!! GTAACTTCTTTTTATGTTTG+TGG + chr4_1:86410306-86410325 Msa0581070:intron 25.0%
! ATTTAAATCAACCAGTCTTT+AGG - chr4_1:86410444-86410463 None:intergenic 25.0%
! AAATTGTTTGTAATTCTGCT+TGG + chr4_1:86410970-86410989 Msa0581070:three_prime_UTR 25.0%
!! TCTAAAATTCTTGAGGTTAA+AGG + chr4_1:86411127-86411146 Msa0581070:three_prime_UTR 25.0%
TGCCACAGTAAAACAAAATA+AGG - chr4_1:86408347-86408366 None:intergenic 30.0%
TTTACATCGAACAAAACAAC+AGG - chr4_1:86408480-86408499 None:intergenic 30.0%
CAGATGAGAAATAGTTAGAA+AGG + chr4_1:86408588-86408607 Msa0581070:intron 30.0%
AAACAAATAGCTTGAGAAGA+AGG - chr4_1:86408633-86408652 None:intergenic 30.0%
! TTGTTTTCTCTCAATTTGAG+GGG + chr4_1:86408647-86408666 Msa0581070:intron 30.0%
AAAAAATGATATGGGACTCA+CGG - chr4_1:86408684-86408703 None:intergenic 30.0%
!!! TTTTTTCTCCACAACACAAT+GGG + chr4_1:86408714-86408733 Msa0581070:intron 30.0%
GGTTAAACTATAATTGCTAC+AGG - chr4_1:86408876-86408895 None:intergenic 30.0%
TCAACCAATGAAAACAATAC+AGG + chr4_1:86408919-86408938 Msa0581070:intron 30.0%
CAACCAATGAAAACAATACA+GGG + chr4_1:86408920-86408939 Msa0581070:intron 30.0%
! AATCCCTGTATTGTTTTCAT+TGG - chr4_1:86408926-86408945 None:intergenic 30.0%
!! AAATTGATACATGATGATGG+TGG + chr4_1:86409046-86409065 Msa0581070:intron 30.0%
!! TTAACATGTGTTACTTGGTT+AGG - chr4_1:86409124-86409143 None:intergenic 30.0%
AATCTACATCAACCTTGATT+TGG + chr4_1:86409199-86409218 Msa0581070:intron 30.0%
AGTGAACTTGGAATTACAAT+GGG + chr4_1:86409258-86409277 Msa0581070:intron 30.0%
!!! GCATTTGGTTTTGTTTCATA+TGG + chr4_1:86409449-86409468 Msa0581070:intron 30.0%
! TTTTTCTCGTTACGTTTATC+TGG + chr4_1:86409515-86409534 Msa0581070:intron 30.0%
GCATGACAAAATAAGCTAAA+AGG - chr4_1:86409548-86409567 None:intergenic 30.0%
! AATAGAGTAGACTAGCTATT+TGG - chr4_1:86409635-86409654 None:intergenic 30.0%
TAATGTGTGGTTGATTGAAA+AGG - chr4_1:86409696-86409715 None:intergenic 30.0%
GCTATTATGTTTGTAATGTG+TGG - chr4_1:86409709-86409728 None:intergenic 30.0%
TGTTACGTTTATCTGGTTAA+AGG + chr4_1:86409793-86409812 Msa0581070:intron 30.0%
ATCTTACAATCAGGTACTTT+GGG + chr4_1:86409841-86409860 Msa0581070:intron 30.0%
GTTATCAACTAATATTGCTC+TGG + chr4_1:86409901-86409920 Msa0581070:intron 30.0%
ATATTATAGGAAGGGTTTCT+AGG - chr4_1:86410163-86410182 None:intergenic 30.0%
TTGGTGAGAAAAGTTTATTC+TGG + chr4_1:86410202-86410221 Msa0581070:intron 30.0%
! TTTCGAAGGAATTTGAAACA+AGG - chr4_1:86410361-86410380 None:intergenic 30.0%
! TGCTGTAATATAGTTTTCGA+AGG - chr4_1:86410375-86410394 None:intergenic 30.0%
AATCTGATTGTGCTAATCAT+GGG - chr4_1:86410493-86410512 None:intergenic 30.0%
AAATCTGATTGTGCTAATCA+TGG - chr4_1:86410494-86410513 None:intergenic 30.0%
TTGTTAACATATGGAACACT+GGG - chr4_1:86410740-86410759 None:intergenic 30.0%
TTTGTTAACATATGGAACAC+TGG - chr4_1:86410741-86410760 None:intergenic 30.0%
TGAACTATGCTGAGTTAATT+TGG + chr4_1:86411090-86411109 Msa0581070:three_prime_UTR 30.0%
TGCAAAAATGAAAAGAGTGG+TGG + chr4_1:86407702-86407721 Msa0581070:five_prime_UTR 35.0%
!! ATGGTTCAGAATTTGTTACC+TGG + chr4_1:86407765-86407784 Msa0581070:five_prime_UTR 35.0%
ATAAGGTGAAGGTGAAGAAA+TGG + chr4_1:86407824-86407843 Msa0581070:exon 35.0%
ATTCGAAGTAATCTTCACGA+AGG - chr4_1:86407953-86407972 None:intergenic 35.0%
AGAAAGAAAAAGGGGATTGA+AGG - chr4_1:86407999-86408018 None:intergenic 35.0%
! GATGTCGATTATGGGTTATT+GGG + chr4_1:86408247-86408266 Msa0581070:intron 35.0%
GTTATTGGGATGCAATGTAT+CGG + chr4_1:86408261-86408280 Msa0581070:intron 35.0%
TTATTGGGATGCAATGTATC+GGG + chr4_1:86408262-86408281 Msa0581070:intron 35.0%
! CTATTTCTCATCTGTGATAC+AGG - chr4_1:86408582-86408601 None:intergenic 35.0%
TGTGTTGTGGAGAAAAAACA+AGG - chr4_1:86408712-86408731 None:intergenic 35.0%
!!! GTTTTTTCTCCACAACACAA+TGG + chr4_1:86408713-86408732 Msa0581070:intron 35.0%
! AATTTTCTCCCATTGTGTTG+TGG - chr4_1:86408725-86408744 None:intergenic 35.0%
! TAGGCACTTGTTAGTAAACA+GGG + chr4_1:86408957-86408976 Msa0581070:intron 35.0%
! GTCTGTTAACATGTGTTACT+TGG - chr4_1:86409129-86409148 None:intergenic 35.0%
CAACAGAATTACAGTGAACT+TGG + chr4_1:86409246-86409265 Msa0581070:intron 35.0%
CAGTGAACTTGGAATTACAA+TGG + chr4_1:86409257-86409276 Msa0581070:intron 35.0%
TTTAAGGATGTAAAGTCCTG+TGG + chr4_1:86409398-86409417 Msa0581070:intron 35.0%
GGTGGTTAATTTATGGCATT+TGG + chr4_1:86409434-86409453 Msa0581070:intron 35.0%
CGTTACGTTTATCTGGTTAA+AGG + chr4_1:86409522-86409541 Msa0581070:intron 35.0%
!!! TGTCATGCTGATTTTTCATG+TGG + chr4_1:86409598-86409617 Msa0581070:intron 35.0%
!!! GTCATGCTGATTTTTCATGT+GGG + chr4_1:86409599-86409618 Msa0581070:intron 35.0%
!!! TCATGCTGATTTTTCATGTG+GGG + chr4_1:86409600-86409619 Msa0581070:intron 35.0%
CTCATATTTCAGCAGATGTT+TGG - chr4_1:86409662-86409681 None:intergenic 35.0%
GGAATATGACAACAGTCATA+TGG + chr4_1:86409755-86409774 Msa0581070:intron 35.0%
GATCTTACAATCAGGTACTT+TGG + chr4_1:86409840-86409859 Msa0581070:intron 35.0%
! AGGTACTTTGGGTACATTTT+AGG + chr4_1:86409852-86409871 Msa0581070:intron 35.0%
AAGCATTCTTTCCTACTACA+TGG - chr4_1:86410020-86410039 None:intergenic 35.0%
! GTAGTAGGAAAGAATGCTTT+TGG + chr4_1:86410021-86410040 Msa0581070:intron 35.0%
! TAGGAAAGAATGCTTTTGGT+AGG + chr4_1:86410025-86410044 Msa0581070:intron 35.0%
! AGGAAAGAATGCTTTTGGTA+GGG + chr4_1:86410026-86410045 Msa0581070:intron 35.0%
GGGGAAACTAAAACATATGT+GGG + chr4_1:86410082-86410101 Msa0581070:intron 35.0%
!! TGGGAAGTATTGAAAATGAC+TGG + chr4_1:86410101-86410120 Msa0581070:intron 35.0%
CTTTGTTGCATAAAGAGCTT+TGG + chr4_1:86410133-86410152 Msa0581070:intron 35.0%
TCTCACCAAAGTAAACTTCA+TGG - chr4_1:86410191-86410210 None:intergenic 35.0%
TTATTCTGGTACTCAAGTTC+AGG + chr4_1:86410216-86410235 Msa0581070:intron 35.0%
!! GACATTCTCTACTGCTTTTA+AGG - chr4_1:86410242-86410261 None:intergenic 35.0%
!!! ACCCATTGTGAATTAGCTTT+TGG + chr4_1:86410277-86410296 Msa0581070:intron 35.0%
GCCAAAAGCTAATTCACAAT+GGG - chr4_1:86410281-86410300 None:intergenic 35.0%
TGCCAAAAGCTAATTCACAA+TGG - chr4_1:86410282-86410301 None:intergenic 35.0%
!!! GTGAATTAGCTTTTGGCAAA+TGG + chr4_1:86410284-86410303 Msa0581070:intron 35.0%
!! TAGTGCTTTTTATGCACCTT+GGG + chr4_1:86410396-86410415 Msa0581070:intron 35.0%
GTAAAACAAGACCTAAAGAC+TGG + chr4_1:86410430-86410449 Msa0581070:intron 35.0%
GATTAGCACAATCAGATTTG+TGG + chr4_1:86410495-86410514 Msa0581070:intron 35.0%
ACAGAAAGTTGACCAAGATA+AGG + chr4_1:86410566-86410585 Msa0581070:intron 35.0%
TGAGGAAAGAAAGAAACTGT+TGG + chr4_1:86410611-86410630 Msa0581070:intron 35.0%
GAGGAAAGAAAGAAACTGTT+GGG + chr4_1:86410612-86410631 Msa0581070:intron 35.0%
! CTTTTCCCTGTGCAATAATT+CGG + chr4_1:86411038-86411057 Msa0581070:three_prime_UTR 35.0%
!! CGTTTGCTCTAAAATTCTTG+AGG + chr4_1:86411120-86411139 Msa0581070:three_prime_UTR 35.0%
TGAAAAGAGTGGTGGTAGTT+TGG + chr4_1:86407710-86407729 Msa0581070:five_prime_UTR 40.0%
! GTGGTGGTAGTTTGGTAATT+TGG + chr4_1:86407718-86407737 Msa0581070:five_prime_UTR 40.0%
!! TTGGCTTTGTAAGAAGACGA+AGG + chr4_1:86407737-86407756 Msa0581070:five_prime_UTR 40.0%
TAAGAAGACGAAGGTTGAGA+TGG + chr4_1:86407746-86407765 Msa0581070:five_prime_UTR 40.0%
TGTTACCTGGAAGCAGAAAT+CGG + chr4_1:86407778-86407797 Msa0581070:five_prime_UTR 40.0%
! CGAGTTGAGCGAAAGAAATA+AGG + chr4_1:86407807-86407826 Msa0581070:five_prime_UTR 40.0%
GAGCGAAAGAAATAAGGTGA+AGG + chr4_1:86407813-86407832 Msa0581070:five_prime_UTR 40.0%
CGAAGGAGAACACAATCTTT+GGG - chr4_1:86407936-86407955 None:intergenic 40.0%
ACGAAGGAGAACACAATCTT+TGG - chr4_1:86407937-86407956 None:intergenic 40.0%
!! TTGAAGGTACCTCTTTGGAA+TGG - chr4_1:86407983-86408002 None:intergenic 40.0%
! TCTGACTCGATGTCGATTAT+GGG + chr4_1:86408239-86408258 Msa0581070:intron 40.0%
! CGATGTCGATTATGGGTTAT+TGG + chr4_1:86408246-86408265 Msa0581070:intron 40.0%
CCGAACTTTCATCATTGTTC+GGG - chr4_1:86408300-86408319 None:intergenic 40.0%
CCCGAACAATGATGAAAGTT+CGG + chr4_1:86408297-86408316 Msa0581070:intron 40.0%
CCCGAACTTTCATCATTGTT+CGG - chr4_1:86408301-86408320 None:intergenic 40.0%
CCGAACAATGATGAAAGTTC+GGG + chr4_1:86408298-86408317 Msa0581070:intron 40.0%
! TTTTCTCTCAATTTGAGGGG+AGG + chr4_1:86408650-86408669 Msa0581070:intron 40.0%
! CTAGGCACTTGTTAGTAAAC+AGG + chr4_1:86408956-86408975 Msa0581070:intron 40.0%
! AGGCACTTGTTAGTAAACAG+GGG + chr4_1:86408958-86408977 Msa0581070:intron 40.0%
TTGTTAGTAAACAGGGGATG+AGG + chr4_1:86408964-86408983 Msa0581070:intron 40.0%
ACAGACTTAACATCCTGTAG+TGG + chr4_1:86409143-86409162 Msa0581070:intron 40.0%
CAGACTTAACATCCTGTAGT+GGG + chr4_1:86409144-86409163 Msa0581070:intron 40.0%
GTGTCATGACCGTAAGTTAT+TGG - chr4_1:86409376-86409395 None:intergenic 40.0%
TACGGTCATGACACAGTTTA+AGG + chr4_1:86409382-86409401 Msa0581070:intron 40.0%
TATGGCGCAGTTTGATTATG+AGG + chr4_1:86409467-86409486 Msa0581070:intron 40.0%
GTCATGCTGATCTTACAATC+AGG + chr4_1:86409832-86409851 Msa0581070:intron 40.0%
TACATGGCTATTGAGGTGAA+AGG - chr4_1:86410004-86410023 None:intergenic 40.0%
TTCCTACTACATGGCTATTG+AGG - chr4_1:86410011-86410030 None:intergenic 40.0%
! GGAAAGAATGCTTTTGGTAG+GGG + chr4_1:86410027-86410046 Msa0581070:intron 40.0%
GTGAAACTTACCTGCTTGTT+GGG + chr4_1:86410061-86410080 Msa0581070:intron 40.0%
! TGAAACTTACCTGCTTGTTG+GGG + chr4_1:86410062-86410081 Msa0581070:intron 40.0%
GGGGGAAACTAAAACATATG+TGG + chr4_1:86410081-86410100 Msa0581070:intron 40.0%
!! CTAGTGCTTTTTATGCACCT+TGG + chr4_1:86410395-86410414 Msa0581070:intron 40.0%
!! AGTGCTTTTTATGCACCTTG+GGG + chr4_1:86410397-86410416 Msa0581070:intron 40.0%
CACAATCAGATTTGTGGCAT+GGG + chr4_1:86410501-86410520 Msa0581070:intron 40.0%
CAATAGAAACTCTACTCGCA+AGG - chr4_1:86410534-86410553 None:intergenic 40.0%
GAAAGTTGACCAAGATAAGG+AGG + chr4_1:86410569-86410588 Msa0581070:intron 40.0%
TGTAAATCCGGTTTCTTCGT+TGG - chr4_1:86410829-86410848 None:intergenic 40.0%
ACGAAGAAACCGGATTTACA+AGG + chr4_1:86410829-86410848 Msa0581070:CDS 40.0%
AAGAAACCGGATTTACAAGG+AGG + chr4_1:86410832-86410851 Msa0581070:CDS 40.0%
GTTGTTCCTCCTTGTAAATC+CGG - chr4_1:86410841-86410860 None:intergenic 40.0%
TGAAGAAATGGCGTCAGGTT+GGG + chr4_1:86407836-86407855 Msa0581070:exon 45.0%
TGGGGAATCACTGGTAACAA+AGG + chr4_1:86407855-86407874 Msa0581070:CDS 45.0%
AAGGTCGTTGCTACGATTTC+TGG + chr4_1:86407874-86407893 Msa0581070:CDS 45.0%
!! AAGGTACCTCTTTGGAATGG+TGG - chr4_1:86407980-86407999 None:intergenic 45.0%
CATAATCGACATCGAGTCAG+AGG - chr4_1:86408240-86408259 None:intergenic 45.0%
! CTCTGACTCGATGTCGATTA+TGG + chr4_1:86408238-86408257 Msa0581070:intron 45.0%
TTAGTAAACAGGGGATGAGG+TGG + chr4_1:86408967-86408986 Msa0581070:intron 45.0%
TACTTGGTTAGGCAGTTGGT+TGG - chr4_1:86409113-86409132 None:intergenic 45.0%
!! GTGTTACTTGGTTAGGCAGT+TGG - chr4_1:86409117-86409136 None:intergenic 45.0%
AGAAATGAGAGTCCCACTAC+AGG - chr4_1:86409159-86409178 None:intergenic 45.0%
! CGAGAGAGAGCATGATTGAA+TGG + chr4_1:86409222-86409241 Msa0581070:intron 45.0%
TCCTGTGGCTGCCAATAATA+TGG + chr4_1:86409413-86409432 Msa0581070:intron 45.0%
ACCATATTATTGGCAGCCAC+AGG - chr4_1:86409417-86409436 None:intergenic 45.0%
TGTGGCTGCCAATAATATGG+TGG + chr4_1:86409416-86409435 Msa0581070:intron 45.0%
CACCTCAATAGCCATGTAGT+AGG + chr4_1:86410006-86410025 Msa0581070:intron 45.0%
! CTTTTGGTAGGGGCAAGTAA+GGG + chr4_1:86410037-86410056 Msa0581070:intron 45.0%
! TTTTGGTAGGGGCAAGTAAG+GGG + chr4_1:86410038-86410057 Msa0581070:intron 45.0%
GGTGAAACTTACCTGCTTGT+TGG + chr4_1:86410060-86410079 Msa0581070:intron 45.0%
! GAAACTTACCTGCTTGTTGG+GGG + chr4_1:86410063-86410082 Msa0581070:intron 45.0%
! TTTAGTTTCCCCCAACAAGC+AGG - chr4_1:86410074-86410093 None:intergenic 45.0%
!! GTGCTTTTTATGCACCTTGG+GGG + chr4_1:86410398-86410417 Msa0581070:intron 45.0%
TTTATGCACCTTGGGGGAAA+AGG + chr4_1:86410404-86410423 Msa0581070:intron 45.0%
! TTTACTTGCCTTTTCCCCCA+AGG - chr4_1:86410415-86410434 None:intergenic 45.0%
GCACAATCAGATTTGTGGCA+TGG + chr4_1:86410500-86410519 Msa0581070:intron 45.0%
TTGACCAAGATAAGGAGGCT+TGG + chr4_1:86410574-86410593 Msa0581070:intron 45.0%
TGACCAAGATAAGGAGGCTT+GGG + chr4_1:86410575-86410594 Msa0581070:intron 45.0%
TGCAGTTCCAACGAAGAAAC+CGG + chr4_1:86410819-86410838 Msa0581070:intron 45.0%
TTCCCTGTGCAATAATTCGG+AGG + chr4_1:86411041-86411060 Msa0581070:three_prime_UTR 45.0%
GACCTCCGAATTATTGCACA+GGG - chr4_1:86411046-86411065 None:intergenic 45.0%
TGACCTCCGAATTATTGCAC+AGG - chr4_1:86411047-86411066 None:intergenic 45.0%
!! TTGTAAAAAAAAAAAAAAAA+AGG - chr4_1:86408032-86408051 None:intergenic 5.0%
!! TCTCACCGATTTCTGCTTCC+AGG - chr4_1:86407786-86407805 None:intergenic 50.0%
GAAGGTGAAGAAATGGCGTC+AGG + chr4_1:86407831-86407850 Msa0581070:exon 50.0%
GTGAAGAAATGGCGTCAGGT+TGG + chr4_1:86407835-86407854 Msa0581070:exon 50.0%
! GAAGAAATGGCGTCAGGTTG+GGG + chr4_1:86407837-86407856 Msa0581070:exon 50.0%
ATGCCTCCACCATTCCAAAG+AGG + chr4_1:86407971-86407990 Msa0581070:CDS 50.0%
!! GTACCTCTTTGGAATGGTGG+AGG - chr4_1:86407977-86407996 None:intergenic 50.0%
!! GGGGATTGAAGGTACCTCTT+TGG - chr4_1:86407988-86408007 None:intergenic 50.0%
! CAAACGCAGCTCTGACGATA+AGG - chr4_1:86408184-86408203 None:intergenic 50.0%
ACATCGAGTCAGAGGCAACA+AGG - chr4_1:86408232-86408251 None:intergenic 50.0%
CAATGTATCGGGCCAACGTT+CGG + chr4_1:86408273-86408292 Msa0581070:intron 50.0%
! CAGGGATTGTGCTGATGTCT+AGG + chr4_1:86408938-86408957 Msa0581070:intron 50.0%
AACAAGCAAGCTCGAGAGCT+TGG + chr4_1:86408997-86409016 Msa0581070:intron 50.0%
TGCTCTCTCTCGCCAAATCA+AGG - chr4_1:86409214-86409233 None:intergenic 50.0%
! GCTTTTGGTAGGGGCAAGTA+AGG + chr4_1:86410036-86410055 Msa0581070:intron 50.0%
TTTGGTAGGGGCAAGTAAGG+GGG + chr4_1:86410039-86410058 Msa0581070:intron 50.0%
GACCAAGATAAGGAGGCTTG+GGG + chr4_1:86410576-86410595 Msa0581070:intron 50.0%
ACCAAGATAAGGAGGCTTGG+GGG + chr4_1:86410577-86410596 Msa0581070:intron 50.0%
GCCAGGAAAGGTCAAGATGA+CGG + chr4_1:86410878-86410897 Msa0581070:CDS 50.0%
CCAGGAAAGGTCAAGATGAC+GGG + chr4_1:86410879-86410898 Msa0581070:CDS 50.0%
! TGCGTTTTGTGTGAGCCCTT+CGG + chr4_1:86411004-86411023 Msa0581070:three_prime_UTR 50.0%
GTCAGAGCTGCGTTTGTCTG+TGG + chr4_1:86408188-86408207 Msa0581070:intron 55.0%
CATTGTTCGGGACCGAACGT+TGG - chr4_1:86408288-86408307 None:intergenic 55.0%
ATACGAGGGGAGATGCTGAG+AGG - chr4_1:86408769-86408788 None:intergenic 55.0%
TCCCCCAAGCCTCCTTATCT+TGG - chr4_1:86410581-86410600 None:intergenic 55.0%
ATAAGGAGGCTTGGGGGAAG+AGG + chr4_1:86410583-86410602 Msa0581070:intron 55.0%
TAAGGAGGCTTGGGGGAAGA+GGG + chr4_1:86410584-86410603 Msa0581070:intron 55.0%
TTGGGGGAAGAGGGCTATTG+AGG + chr4_1:86410593-86410612 Msa0581070:intron 55.0%
GCAAACTAAGAGCTGCTGCC+AGG + chr4_1:86410861-86410880 Msa0581070:CDS 55.0%
CTAAGAGCTGCTGCCAGGAA+AGG + chr4_1:86410866-86410885 Msa0581070:CDS 55.0%
CCCGTCATCTTGACCTTTCC+TGG - chr4_1:86410882-86410901 None:intergenic 55.0%
! GTTTTGTGTGAGCCCTTCGG+CGG + chr4_1:86411007-86411026 Msa0581070:three_prime_UTR 55.0%
! TTTTGTGTGAGCCCTTCGGC+GGG + chr4_1:86411008-86411027 Msa0581070:three_prime_UTR 55.0%
!! GCGTCAGGTTGGGGAATCAC+TGG + chr4_1:86407846-86407865 Msa0581070:CDS 60.0%
AAAGAAGCCTGCCCGCCGAA+GGG - chr4_1:86411022-86411041 None:intergenic 60.0%
AAAAGAAGCCTGCCCGCCGA+AGG - chr4_1:86411023-86411042 None:intergenic 60.0%
GTGTGAGCCCTTCGGCGGGC+AGG + chr4_1:86411012-86411031 Msa0581070:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86407692 86411280 86407692 ID=Msa0581070;Name=Msa0581070
chr4_1 mRNA 86407692 86411280 86407692 ID=Msa0581070-mRNA-1;Parent=Msa0581070;Name=Msa0581070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=151|1|1|1|0|1|2|358|82
chr4_1 exon 86407692 86407992 86407692 ID=Msa0581070-mRNA-1:exon:31912;Parent=Msa0581070-mRNA-1
chr4_1 exon 86410824 86411280 86410824 ID=Msa0581070-mRNA-1:exon:31913;Parent=Msa0581070-mRNA-1
chr4_1 five_prime_UTR 86407692 86407842 86407692 ID=Msa0581070-mRNA-1:five_prime_utr;Parent=Msa0581070-mRNA-1
chr4_1 CDS 86407843 86407992 86407843 ID=Msa0581070-mRNA-1:cds;Parent=Msa0581070-mRNA-1
chr4_1 CDS 86410824 86410922 86410824 ID=Msa0581070-mRNA-1:cds;Parent=Msa0581070-mRNA-1
chr4_1 three_prime_UTR 86410923 86411280 86410923 ID=Msa0581070-mRNA-1:three_prime_utr;Parent=Msa0581070-mRNA-1
Gene Sequence

>Msa0581070

ATGGCGTCAGGTTGGGGAATCACTGGTAACAAAGGTCGTTGCTACGATTTCTGGATCGATTTCAGCGAGTGCATGTCTACTTGTAGAGAACCCAAAGATTGTGTTCTCCTTCGTGAAGATTACTTCGAATGCCTCCACCATTCCAAAGAGTTCCAACGAAGAAACCGGATTTACAAGGAGGAACAACGCAAACTAAGAGCTGCTGCCAGGAAAGGTCAAGATGACGGGAAAGTTGCTGAACATCATTAG

Protein sequence

>Msa0581070

MASGWGITGNKGRCYDFWIDFSECMSTCREPKDCVLLREDYFECLHHSKEFQRRNRIYKEEQRKLRAAARKGQDDGKVAEHH*