Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706020 | XP_003630393.1 | 97.605 | 167 | 4 | 0 | 1 | 167 | 1 | 167 | 1.77e-113 | 351 |
| Msa0706020 | XP_003630393.1 | 98.235 | 170 | 3 | 0 | 168 | 337 | 406 | 575 | 2.10e-113 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706020 | sp|Q9STW5|MACP2_ARATH | 48.538 | 171 | 78 | 3 | 171 | 334 | 432 | 599 | 4.23e-43 | 160 |
| Msa0706020 | sp|Q9STW5|MACP2_ARATH | 45.732 | 164 | 87 | 1 | 6 | 167 | 4 | 167 | 1.42e-35 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706020 | G7LFS5 | 97.605 | 167 | 4 | 0 | 1 | 167 | 1 | 167 | 8.45e-114 | 351 |
| Msa0706020 | G7LFS5 | 98.235 | 170 | 3 | 0 | 168 | 337 | 406 | 575 | 1.00e-113 | 351 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032620 | Msa0706020 | 0.802103 | 6.576802e-49 | -8.615850e-47 |
| Msa0670000 | Msa0706020 | 0.811167 | 8.017679e-51 | -8.615850e-47 |
| Msa0706020 | Msa0735810 | 0.803408 | 3.536918e-49 | -8.615850e-47 |
| Msa0706020 | Msa0801780 | 0.812380 | 4.365822e-51 | -8.615850e-47 |
| Msa0706020 | Msa0900770 | 0.814524 | 1.474817e-51 | -8.615850e-47 |
| Msa0706020 | Msa0925810 | 0.800117 | 1.674924e-48 | -8.615850e-47 |
| Msa0706020 | Msa1067120 | 0.802603 | 5.187973e-49 | -8.615850e-47 |
| Msa0706020 | Msa1190040 | 0.813597 | 2.361474e-51 | -8.615850e-47 |
| Msa0419670 | Msa0706020 | 0.802132 | 6.486592e-49 | -8.615850e-47 |
| Msa0348550 | Msa0706020 | 0.803327 | 3.675352e-49 | -8.615850e-47 |
| Msa0363530 | Msa0706020 | 0.819357 | 1.211776e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706020 | MtrunA17_Chr8g0385131 | 97.605 | 167 | 4 | 0 | 1 | 167 | 1 | 167 | 1.63e-117 | 351 |
| Msa0706020 | MtrunA17_Chr8g0385131 | 98.235 | 170 | 3 | 0 | 168 | 337 | 406 | 575 | 1.93e-117 | 351 |
| Msa0706020 | MtrunA17_Chr8g0385181 | 73.653 | 167 | 42 | 2 | 1 | 167 | 1 | 165 | 1.24e-76 | 245 |
| Msa0706020 | MtrunA17_Chr8g0385181 | 70.807 | 161 | 35 | 2 | 168 | 328 | 405 | 553 | 6.50e-71 | 230 |
| Msa0706020 | MtrunA17_Chr8g0385171 | 64.671 | 167 | 52 | 4 | 1 | 167 | 1 | 160 | 1.60e-63 | 204 |
| Msa0706020 | MtrunA17_Chr8g0385161 | 56.471 | 170 | 53 | 2 | 168 | 337 | 105 | 253 | 7.23e-55 | 179 |
| Msa0706020 | MtrunA17_Chr2g0277061 | 52.727 | 165 | 73 | 2 | 171 | 330 | 433 | 597 | 9.83e-48 | 169 |
| Msa0706020 | MtrunA17_Chr2g0277061 | 50.314 | 159 | 77 | 1 | 11 | 167 | 10 | 168 | 1.40e-39 | 147 |
| Msa0706020 | MtrunA17_Chr8g0385121 | 46.703 | 182 | 86 | 3 | 164 | 337 | 421 | 599 | 2.38e-43 | 157 |
| Msa0706020 | MtrunA17_Chr8g0385121 | 46.795 | 156 | 81 | 2 | 12 | 167 | 9 | 162 | 5.77e-37 | 140 |
| Msa0706020 | MtrunA17_Chr4g0046841 | 46.497 | 157 | 80 | 2 | 12 | 167 | 21 | 174 | 2.90e-34 | 132 |
| Msa0706020 | MtrunA17_Chr4g0046841 | 37.209 | 215 | 116 | 5 | 135 | 331 | 403 | 616 | 3.80e-31 | 123 |
| Msa0706020 | MtrunA17_Chr3g0122211 | 38.750 | 160 | 95 | 2 | 10 | 167 | 11 | 169 | 4.84e-30 | 120 |
| Msa0706020 | MtrunA17_Chr3g0122211 | 29.891 | 184 | 106 | 5 | 167 | 328 | 437 | 619 | 9.34e-18 | 84.3 |
| Msa0706020 | MtrunA17_Chr8g0391931 | 39.744 | 156 | 91 | 2 | 13 | 167 | 6 | 159 | 1.20e-26 | 110 |
| Msa0706020 | MtrunA17_Chr8g0391931 | 35.945 | 217 | 115 | 10 | 128 | 327 | 380 | 589 | 2.01e-23 | 101 |
| Msa0706020 | MtrunA17_Chr8g0377631 | 36.810 | 163 | 92 | 2 | 16 | 167 | 11 | 173 | 2.66e-25 | 106 |
| Msa0706020 | MtrunA17_Chr8g0377631 | 35.795 | 176 | 98 | 4 | 167 | 328 | 444 | 618 | 1.55e-24 | 104 |
| Msa0706020 | MtrunA17_Chr2g0284691 | 37.013 | 154 | 95 | 2 | 16 | 168 | 22 | 174 | 1.92e-22 | 98.2 |
| Msa0706020 | MtrunA17_Chr2g0284691 | 36.702 | 188 | 91 | 5 | 152 | 328 | 396 | 566 | 6.80e-22 | 96.7 |
| Msa0706020 | MtrunA17_Chr8g0385141 | 73.214 | 56 | 15 | 0 | 112 | 167 | 4 | 59 | 4.17e-22 | 91.7 |
| Msa0706020 | MtrunA17_Chr4g0013011 | 31.098 | 164 | 113 | 0 | 5 | 168 | 3 | 166 | 5.08e-22 | 97.1 |
| Msa0706020 | MtrunA17_Chr4g0013011 | 34.737 | 190 | 89 | 7 | 152 | 328 | 417 | 584 | 7.83e-21 | 93.6 |
| Msa0706020 | MtrunA17_Chr7g0274871 | 40.972 | 144 | 77 | 3 | 12 | 154 | 126 | 262 | 8.25e-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706020 | AT4G24290.2 | 48.538 | 171 | 78 | 3 | 171 | 334 | 432 | 599 | 4.30e-44 | 160 |
| Msa0706020 | AT4G24290.2 | 45.732 | 164 | 87 | 1 | 6 | 167 | 4 | 167 | 1.44e-36 | 139 |
| Msa0706020 | AT4G24290.3 | 48.538 | 171 | 78 | 3 | 171 | 334 | 432 | 599 | 4.30e-44 | 160 |
| Msa0706020 | AT4G24290.3 | 45.732 | 164 | 87 | 1 | 6 | 167 | 4 | 167 | 1.44e-36 | 139 |
| Msa0706020 | AT1G28380.1 | 46.341 | 164 | 85 | 2 | 6 | 167 | 8 | 170 | 4.38e-38 | 143 |
| Msa0706020 | AT1G28380.1 | 40.678 | 177 | 83 | 7 | 171 | 331 | 438 | 608 | 1.76e-25 | 107 |
| Msa0706020 | AT4G24290.1 | 45.732 | 164 | 87 | 1 | 6 | 167 | 4 | 167 | 1.04e-37 | 138 |
| Msa0706020 | AT1G14780.1 | 37.423 | 163 | 96 | 3 | 11 | 167 | 7 | 169 | 1.38e-25 | 107 |
| Msa0706020 | AT1G14780.1 | 33.140 | 172 | 87 | 6 | 180 | 327 | 452 | 619 | 1.60e-14 | 75.1 |
| Msa0706020 | AT1G29690.1 | 41.026 | 156 | 90 | 2 | 14 | 168 | 22 | 176 | 6.26e-25 | 105 |
| Msa0706020 | AT1G29690.1 | 37.234 | 188 | 83 | 7 | 152 | 328 | 398 | 561 | 1.75e-20 | 92.8 |
Find 98 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAACTGTGTAATAATTTA+TGG | 0.079004 | 4_4:+78914935 | Msa0706020:exon |
| GGTCATTTCTGTGCTTCATT+TGG | 0.229180 | 4_4:+78915496 | Msa0706020:CDS |
| CTGCGCTTCTCCAAAGTTAT+TGG | 0.250969 | 4_4:+78917375 | Msa0706020:CDS |
| CTTTCCCTCTTTCGGAATAA+AGG | 0.265281 | 4_4:-78917478 | None:intergenic |
| TGACCCCTCTTTCCCTCTTT+CGG | 0.276599 | 4_4:-78917486 | None:intergenic |
| TTGATAGAGTTTGAAACATT+TGG | 0.298663 | 4_4:-78915140 | None:intergenic |
| TGTGCTTCATTTGGGTTATC+TGG | 0.301827 | 4_4:+78915505 | Msa0706020:CDS |
| GTCATTTCTGTGCTTCATTT+GGG | 0.313321 | 4_4:+78915497 | Msa0706020:CDS |
| AGCTCCATTTCACTTTCTTA+TGG | 0.318511 | 4_4:-78917251 | None:intergenic |
| CCAGTATCCTGGAGTGTCTT+CGG | 0.320923 | 4_4:-78917625 | None:intergenic |
| ATGGTCACATCGCCTGGTTT+TGG | 0.329583 | 4_4:-78917510 | None:intergenic |
| CTCCTACAAGACGCATTTCA+TGG | 0.331088 | 4_4:-78915462 | None:intergenic |
| CCGAAGACACTCCAGGATAC+TGG | 0.331869 | 4_4:+78917625 | Msa0706020:CDS |
| TGGAGAAGCGCAGCCGTAAA+AGG | 0.346124 | 4_4:-78917365 | None:intergenic |
| TCTAACCTTGCCAAGGCATC+AGG | 0.360321 | 4_4:-78915667 | None:intergenic |
| CTTGTGTCTTGACTTGGGTT+TGG | 0.374129 | 4_4:-78914773 | None:intergenic |
| TGCCGTCATTTGGAGATTCC+TGG | 0.378757 | 4_4:+78915104 | Msa0706020:CDS |
| AGCAATAAACTCAATTGGAT+TGG | 0.384044 | 4_4:+78914998 | Msa0706020:CDS |
| CAGTATCCTGGAGTGTCTTC+GGG | 0.387249 | 4_4:-78917624 | None:intergenic |
| GCAATAAACTCAATTGGATT+GGG | 0.396918 | 4_4:+78914999 | Msa0706020:CDS |
| CAGAAAGCAATAAACTCAAT+TGG | 0.405836 | 4_4:+78914993 | Msa0706020:CDS |
| AACCATGAAATGCGTCTTGT+AGG | 0.407081 | 4_4:+78915460 | Msa0706020:CDS |
| TGTTGACTTGTGTCTTGACT+TGG | 0.408555 | 4_4:-78914779 | None:intergenic |
| TCAACAACACTGCCGTCATT+TGG | 0.408668 | 4_4:+78915094 | Msa0706020:CDS |
| CAACTGGGCTCCTGTGACAA+TGG | 0.423001 | 4_4:-78917322 | None:intergenic |
| TTTGATAATTGTAAGAGTAT+TGG | 0.427333 | 4_4:+78915047 | Msa0706020:CDS |
| CCAGGATACTGGGTTGTGTC+TGG | 0.429175 | 4_4:+78917636 | Msa0706020:CDS |
| GTTGCTGAATAAGATGGATT+AGG | 0.432361 | 4_4:-78914834 | None:intergenic |
| GCTGCTGAAACCGCCAAGAT+TGG | 0.440338 | 4_4:-78917436 | None:intergenic |
| CTTGTAGGAGACACTGCATC+TGG | 0.453976 | 4_4:+78915475 | Msa0706020:CDS |
| CCCACTCGGGTGGTTTCTGA+AGG | 0.465186 | 4_4:-78917404 | None:intergenic |
| GAACCGATGGTCACATCGCC+TGG | 0.470037 | 4_4:-78917516 | None:intergenic |
| AGTCTCTCGCTTATGATGGT+TGG | 0.478037 | 4_4:+78915557 | Msa0706020:CDS |
| CGGTTTCAGCAGCAAGTCCA+CGG | 0.479542 | 4_4:+78917446 | Msa0706020:CDS |
| TGGGATCAATCCTCCAATCT+TGG | 0.481908 | 4_4:+78917423 | Msa0706020:CDS |
| ATTAAGTCTCTCGCTTATGA+TGG | 0.482924 | 4_4:+78915553 | Msa0706020:CDS |
| ACTTCCATAAGAAAGTGAAA+TGG | 0.489566 | 4_4:+78917247 | Msa0706020:CDS |
| CAAAGCTTTCTGCACAGAAT+GGG | 0.489905 | 4_4:+78917661 | Msa0706020:CDS |
| CTTAGCCTTTATTCCGAAAG+AGG | 0.493443 | 4_4:+78917473 | Msa0706020:CDS |
| GGTTTCAGCAGCAAGTCCAC+GGG | 0.495177 | 4_4:+78917447 | Msa0706020:CDS |
| ATTTATGGATCCATCACAAA+GGG | 0.496457 | 4_4:+78914950 | Msa0706020:exon |
| AAGGGTGGCACCAATAACTT+TGG | 0.502575 | 4_4:-78917385 | None:intergenic |
| ATCATGGGACCCTGATGCCT+TGG | 0.504106 | 4_4:+78915657 | Msa0706020:CDS |
| GCAAAGCTTTCTGCACAGAA+TGG | 0.504553 | 4_4:+78917660 | Msa0706020:CDS |
| CCAGACACAACCCAGTATCC+TGG | 0.505046 | 4_4:-78917636 | None:intergenic |
| GCTGAAACCGCCAAGATTGG+AGG | 0.507368 | 4_4:-78917433 | None:intergenic |
| GTTGACTTGTGTCTTGACTT+GGG | 0.510761 | 4_4:-78914778 | None:intergenic |
| AAGACGCTGTGCCATCATCA+TGG | 0.514702 | 4_4:+78915641 | Msa0706020:CDS |
| CGAAGACACTCCAGGATACT+GGG | 0.516395 | 4_4:+78917626 | Msa0706020:CDS |
| GACAGTCTTTCCATTGTCAC+AGG | 0.517079 | 4_4:+78917312 | Msa0706020:CDS |
| AGAGGGCCCGAAGACACTCC+AGG | 0.518785 | 4_4:+78917618 | Msa0706020:CDS |
| CTAGGTGTACGCACTGGTGC+AGG | 0.525023 | 4_4:-78917561 | None:intergenic |
| CAGCGTCTTTGACATGATCA+TGG | 0.533265 | 4_4:-78915627 | None:intergenic |
| TTATTCCGAAAGAGGGAAAG+AGG | 0.533936 | 4_4:+78917481 | Msa0706020:CDS |
| AGATGTTCTCACCTTGCACC+AGG | 0.536502 | 4_4:+78915196 | Msa0706020:CDS |
| GCATCAGGGTCCCATGATGA+TGG | 0.541137 | 4_4:-78915652 | None:intergenic |
| AAACGTGAAACCCTTTGTGA+TGG | 0.541765 | 4_4:-78914960 | None:intergenic |
| TTGTACTGCACCAGTTGAAT+CGG | 0.542128 | 4_4:+78917287 | Msa0706020:CDS |
| GATCAATCCTCCAATCTTGG+CGG | 0.547130 | 4_4:+78917426 | Msa0706020:CDS |
| TTAGCCTTTATTCCGAAAGA+GGG | 0.554550 | 4_4:+78917474 | Msa0706020:CDS |
| ACCTAGGCTTCAAAAGTATG+TGG | 0.559009 | 4_4:+78917578 | Msa0706020:CDS |
| AGACTGTCATCCGATTCAAC+TGG | 0.561552 | 4_4:-78917297 | None:intergenic |
| TCAAAAGTATGTGGACATAA+CGG | 0.561886 | 4_4:+78917587 | Msa0706020:CDS |
| AGACGCTGTGCCATCATCAT+GGG | 0.566282 | 4_4:+78915642 | Msa0706020:CDS |
| AACTCTATCAAATGTGTCAG+AGG | 0.576457 | 4_4:+78915152 | Msa0706020:CDS |
| CTCGGGTGGTTTCTGAAGGG+TGG | 0.584252 | 4_4:-78917400 | None:intergenic |
| TATTCCGAAAGAGGGAAAGA+GGG | 0.588418 | 4_4:+78917482 | Msa0706020:CDS |
| TTTGGAATTGTAACACCACC+AGG | 0.594091 | 4_4:-78915122 | None:intergenic |
| GTTGAATTAGAAAACTATCA+TGG | 0.594595 | 4_4:+78915598 | Msa0706020:CDS |
| TAGGAAAGTAGCAAGAGATG+AGG | 0.594881 | 4_4:-78914815 | None:intergenic |
| TGGTCGATGTATCAAAGACT+TGG | 0.598827 | 4_4:+78915525 | Msa0706020:CDS |
| TCTAAGTTCTAACCTTGCCA+AGG | 0.604487 | 4_4:-78915674 | None:intergenic |
| ATTGGAGGATTGATCCCACT+CGG | 0.605159 | 4_4:-78917418 | None:intergenic |
| CCTTCAGAAACCACCCGAGT+GGG | 0.608119 | 4_4:+78917404 | Msa0706020:CDS |
| AAGAGGGGTCATCCAAAACC+AGG | 0.612754 | 4_4:+78917498 | Msa0706020:CDS |
| GCAAGGTGAGAACATCTGAA+TGG | 0.615077 | 4_4:-78915190 | None:intergenic |
| TGAAGCCTAGGTGTACGCAC+TGG | 0.617438 | 4_4:-78917567 | None:intergenic |
| AAACCAGGCGATGTGACCAT+CGG | 0.618841 | 4_4:+78917513 | Msa0706020:CDS |
| GGGACCCTGATGCCTTGGCA+AGG | 0.620891 | 4_4:+78915662 | Msa0706020:CDS |
| CTAACCTTGCCAAGGCATCA+GGG | 0.621138 | 4_4:-78915666 | None:intergenic |
| CACCAGGAATCTCCAAATGA+CGG | 0.624066 | 4_4:-78915106 | None:intergenic |
| CCACTCGGGTGGTTTCTGAA+GGG | 0.624339 | 4_4:-78917403 | None:intergenic |
| GAGGATTGATCCCACTCGGG+TGG | 0.625847 | 4_4:-78917414 | None:intergenic |
| AGAATATGTAGTAGAACCGA+TGG | 0.629598 | 4_4:-78917529 | None:intergenic |
| TGATTATTGATGAAGATCAA+AGG | 0.636173 | 4_4:-78915074 | None:intergenic |
| CCCTTCAGAAACCACCCGAG+TGG | 0.639822 | 4_4:+78917403 | Msa0706020:CDS |
| GACATAACGGAAATGATGAG+AGG | 0.645131 | 4_4:+78917600 | Msa0706020:CDS |
| GTTTCAGCAGCAAGTCCACG+GGG | 0.645716 | 4_4:+78917448 | Msa0706020:CDS |
| AGAGATGAGGAACAGTGACA+AGG | 0.646934 | 4_4:-78914802 | None:intergenic |
| TCAATAGTGAATACTTAACA+AGG | 0.648499 | 4_4:-78917695 | None:intergenic |
| AATTTATGGATCCATCACAA+AGG | 0.652071 | 4_4:+78914949 | Msa0706020:exon |
| ACATATATATACCTGGTGCA+AGG | 0.653634 | 4_4:-78915207 | None:intergenic |
| CTGCACCAGTGCGTACACCT+AGG | 0.659104 | 4_4:+78917562 | Msa0706020:CDS |
| ACATAACGGAAATGATGAGA+GGG | 0.659425 | 4_4:+78917601 | Msa0706020:CDS |
| TTGGAGGATTGATCCCACTC+GGG | 0.664867 | 4_4:-78917417 | None:intergenic |
| ATTCCGAAAGAGGGAAAGAG+GGG | 0.674087 | 4_4:+78917483 | Msa0706020:CDS |
| CGTCATTTGGAGATTCCTGG+TGG | 0.717153 | 4_4:+78915107 | Msa0706020:CDS |
| TTTCAGCAGCAAGTCCACGG+GGG | 0.749568 | 4_4:+78917449 | Msa0706020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATGAAATATTTTTTTTAA+TGG | - | chr4_4:78916223-78916242 | None:intergenic | 10.0% |
| !! | CATTAAAAAAAATATTTCAT+TGG | + | chr4_4:78916221-78916240 | Msa0706020:intron | 10.0% |
| !! | TTAAAAAAAATATTTCATTG+GGG | + | chr4_4:78916223-78916242 | Msa0706020:intron | 10.0% |
| !!! | ATATATGTTTCTTTTACAAA+AGG | + | chr4_4:78915222-78915241 | Msa0706020:intron | 15.0% |
| !! | AATTTCATTTCAAAATAAGA+TGG | - | chr4_4:78916171-78916190 | None:intergenic | 15.0% |
| !! | TCAAACTGTGTAATAATTTA+TGG | + | chr4_4:78914935-78914954 | Msa0706020:exon | 20.0% |
| !!! | TTTGATAATTGTAAGAGTAT+TGG | + | chr4_4:78915047-78915066 | Msa0706020:CDS | 20.0% |
| !! | AAAAGAAACATATATATACC+TGG | - | chr4_4:78915217-78915236 | None:intergenic | 20.0% |
| !! | GGAATATTTAGATAGAAATT+TGG | - | chr4_4:78915752-78915771 | None:intergenic | 20.0% |
| !! | ATCTAAATATTCCAAAGATT+TGG | + | chr4_4:78915759-78915778 | Msa0706020:intron | 20.0% |
| !! | AAACTTAAGTAACAAAAAAG+AGG | + | chr4_4:78916089-78916108 | Msa0706020:intron | 20.0% |
| !!! | ATCTTTTTATGGTACATAAA+AGG | + | chr4_4:78916253-78916272 | Msa0706020:intron | 20.0% |
| !! | AAACAATGTATCATAATGAA+TGG | + | chr4_4:78916292-78916311 | Msa0706020:intron | 20.0% |
| !! | TATATCGCTTTCTTAAAATT+AGG | - | chr4_4:78916510-78916529 | None:intergenic | 20.0% |
| !! | TCTGTTATAAACCTTATAAA+AGG | + | chr4_4:78916647-78916666 | Msa0706020:intron | 20.0% |
| !! | TATAAACCTTATAAAAGGAT+AGG | + | chr4_4:78916652-78916671 | Msa0706020:intron | 20.0% |
| !! | ATTGTATTTATGTAAAGCTT+AGG | - | chr4_4:78916935-78916954 | None:intergenic | 20.0% |
| ! | TGATTATTGATGAAGATCAA+AGG | - | chr4_4:78915077-78915096 | None:intergenic | 25.0% |
| !! | TTGATAGAGTTTGAAACATT+TGG | - | chr4_4:78915143-78915162 | None:intergenic | 25.0% |
| !! | ATGTTTCTTTTACAAAAGGA+CGG | + | chr4_4:78915226-78915245 | Msa0706020:intron | 25.0% |
| ! | AACAAAAATCGACTACAATT+TGG | - | chr4_4:78915339-78915358 | None:intergenic | 25.0% |
| !! | TCTAAAACAACACATAAACT+TGG | - | chr4_4:78915426-78915445 | None:intergenic | 25.0% |
| ! | GTTGAATTAGAAAACTATCA+TGG | + | chr4_4:78915598-78915617 | Msa0706020:CDS | 25.0% |
| !!! | AATTTCTAGTTATAGAGCAA+TGG | - | chr4_4:78915789-78915808 | None:intergenic | 25.0% |
| !!! | AATTTATACCGATTCATACA+AGG | + | chr4_4:78915884-78915903 | Msa0706020:intron | 25.0% |
| !!! | AAAAGTTTTTGGATACTAGT+TGG | - | chr4_4:78916009-78916028 | None:intergenic | 25.0% |
| !! | TAGTATCCAAAAACTTTTGA+AGG | + | chr4_4:78916011-78916030 | Msa0706020:intron | 25.0% |
| !! | AACACACCACATTTTTATTA+TGG | + | chr4_4:78916113-78916132 | Msa0706020:intron | 25.0% |
| ! | TCATTTCAAAATAAGATGGT+CGG | - | chr4_4:78916167-78916186 | None:intergenic | 25.0% |
| !! | TTTTATGGTACATAAAAGGA+AGG | + | chr4_4:78916257-78916276 | Msa0706020:intron | 25.0% |
| ! | TTTATGGTACATAAAAGGAA+GGG | + | chr4_4:78916258-78916277 | Msa0706020:intron | 25.0% |
| ! | AATGTATCATAATGAATGGT+TGG | + | chr4_4:78916296-78916315 | Msa0706020:intron | 25.0% |
| !!! | TTTTTTCATCTTCTGATGAA+AGG | + | chr4_4:78917062-78917081 | Msa0706020:intron | 25.0% |
| ! | TCAATAGTGAATACTTAACA+AGG | - | chr4_4:78917698-78917717 | None:intergenic | 25.0% |
| !! | TTTTGTGTTGCTGAATAAGA+TGG | - | chr4_4:78914843-78914862 | None:intergenic | 30.0% |
| AATTTATGGATCCATCACAA+AGG | + | chr4_4:78914949-78914968 | Msa0706020:exon | 30.0% | |
| ATTTATGGATCCATCACAAA+GGG | + | chr4_4:78914950-78914969 | Msa0706020:exon | 30.0% | |
| CAGAAAGCAATAAACTCAAT+TGG | + | chr4_4:78914993-78915012 | Msa0706020:CDS | 30.0% | |
| AGCAATAAACTCAATTGGAT+TGG | + | chr4_4:78914998-78915017 | Msa0706020:CDS | 30.0% | |
| GCAATAAACTCAATTGGATT+GGG | + | chr4_4:78914999-78915018 | Msa0706020:CDS | 30.0% | |
| TTCATTAACCATCCAGTAAA+CGG | + | chr4_4:78915280-78915299 | Msa0706020:intron | 30.0% | |
| TGTAATTAGTTACCGTTTAC+TGG | - | chr4_4:78915295-78915314 | None:intergenic | 30.0% | |
| AAAATCGACTACAATTTGGA+TGG | - | chr4_4:78915335-78915354 | None:intergenic | 30.0% | |
| !! | CATAAACTTGGTCTTAAAAG+TGG | - | chr4_4:78915414-78915433 | None:intergenic | 30.0% |
| AATAACACTATGCAGTTCAA+GGG | - | chr4_4:78915701-78915720 | None:intergenic | 30.0% | |
| TAATAACACTATGCAGTTCA+AGG | - | chr4_4:78915702-78915721 | None:intergenic | 30.0% | |
| TCTATGAACCTTGTATGAAT+CGG | - | chr4_4:78915895-78915914 | None:intergenic | 30.0% | |
| ! | CTGTTTCCTTCAAAAGTTTT+TGG | - | chr4_4:78916020-78916039 | None:intergenic | 30.0% |
| GGAATGCCATAATAAAAATG+TGG | - | chr4_4:78916122-78916141 | None:intergenic | 30.0% | |
| GCAGATTATGTCAAGAAAAA+TGG | + | chr4_4:78916539-78916558 | Msa0706020:intron | 30.0% | |
| ! | TACCGTTGACTATTATTCAA+AGG | + | chr4_4:78916564-78916583 | Msa0706020:intron | 30.0% |
| ! | ACCGTTGACTATTATTCAAA+GGG | + | chr4_4:78916565-78916584 | Msa0706020:intron | 30.0% |
| TCCCTTTGAATAATAGTCAA+CGG | - | chr4_4:78916569-78916588 | None:intergenic | 30.0% | |
| AACCTTATAAAAGGATAGGT+CGG | + | chr4_4:78916656-78916675 | Msa0706020:intron | 30.0% | |
| TGGCTAAGATTTAGTATCTT+GGG | + | chr4_4:78916908-78916927 | Msa0706020:intron | 30.0% | |
| TGCACATTAAAAATGCAAGA+GGG | - | chr4_4:78916971-78916990 | None:intergenic | 30.0% | |
| ATGCACATTAAAAATGCAAG+AGG | - | chr4_4:78916972-78916991 | None:intergenic | 30.0% | |
| AACTACGAATCTCTGAATAT+TGG | + | chr4_4:78917032-78917051 | Msa0706020:intron | 30.0% | |
| ACTTCCATAAGAAAGTGAAA+TGG | + | chr4_4:78917247-78917266 | Msa0706020:CDS | 30.0% | |
| !!! | AAAAGAAGTGTCTCCTTTTA+CGG | + | chr4_4:78917352-78917371 | Msa0706020:CDS | 30.0% |
| ! | TCAAAAGTATGTGGACATAA+CGG | + | chr4_4:78917587-78917606 | Msa0706020:CDS | 30.0% |
| ! | GTTGCTGAATAAGATGGATT+AGG | - | chr4_4:78914837-78914856 | None:intergenic | 35.0% |
| AACTCTATCAAATGTGTCAG+AGG | + | chr4_4:78915152-78915171 | Msa0706020:CDS | 35.0% | |
| ACATATATATACCTGGTGCA+AGG | - | chr4_4:78915210-78915229 | None:intergenic | 35.0% | |
| ATTAGTTACCGTTTACTGGA+TGG | - | chr4_4:78915291-78915310 | None:intergenic | 35.0% | |
| GTCATTTCTGTGCTTCATTT+GGG | + | chr4_4:78915497-78915516 | Msa0706020:CDS | 35.0% | |
| ATTAAGTCTCTCGCTTATGA+TGG | + | chr4_4:78915553-78915572 | Msa0706020:CDS | 35.0% | |
| ! | CTGCATAGTGTTATTATGTG+TGG | + | chr4_4:78915706-78915725 | Msa0706020:intron | 35.0% |
| CACAGTTCAATTTGCATCAT+AGG | - | chr4_4:78915825-78915844 | None:intergenic | 35.0% | |
| TGATGCAAATTGAACTGTGA+TGG | + | chr4_4:78915826-78915845 | Msa0706020:intron | 35.0% | |
| ACAAGGTTCATAGAACGTTT+CGG | + | chr4_4:78915901-78915920 | Msa0706020:intron | 35.0% | |
| CAAAGGTAGTATAGTGCTAA+AGG | - | chr4_4:78916143-78916162 | None:intergenic | 35.0% | |
| AAAATAAGATGGTCGGTCAA+AGG | - | chr4_4:78916160-78916179 | None:intergenic | 35.0% | |
| TTCAACAAAAGTGATGTCAG+AGG | - | chr4_4:78916366-78916385 | None:intergenic | 35.0% | |
| !! | TCACTTTTGTTGAATATCCG+TGG | + | chr4_4:78916372-78916391 | Msa0706020:intron | 35.0% |
| TTGTTGAATATCCGTGGAAA+TGG | + | chr4_4:78916378-78916397 | Msa0706020:intron | 35.0% | |
| GAAGGTAGAGATTTATAGCA+TGG | - | chr4_4:78916413-78916432 | None:intergenic | 35.0% | |
| TGAGATGTTTACTGGAATAC+TGG | - | chr4_4:78916687-78916706 | None:intergenic | 35.0% | |
| !! | TTCGATTCTGAGATGTTTAC+TGG | - | chr4_4:78916695-78916714 | None:intergenic | 35.0% |
| TTGTCTGTTTCAGTTATCAC+AGG | - | chr4_4:78916776-78916795 | None:intergenic | 35.0% | |
| GAAACTCGAAAAATTGATGG+AGG | - | chr4_4:78916814-78916833 | None:intergenic | 35.0% | |
| GCTGAAACTCGAAAAATTGA+TGG | - | chr4_4:78916817-78916836 | None:intergenic | 35.0% | |
| CAAGATACTAAATCTTAGCC+AGG | - | chr4_4:78916909-78916928 | None:intergenic | 35.0% | |
| CTGGCTAAGATTTAGTATCT+TGG | + | chr4_4:78916907-78916926 | Msa0706020:intron | 35.0% | |
| GCACATTAAAAATGCAAGAG+GGG | - | chr4_4:78916970-78916989 | None:intergenic | 35.0% | |
| ! | TTAATGTGCATTTTGCGAGT+TGG | + | chr4_4:78916981-78917000 | Msa0706020:intron | 35.0% |
| ! | TACTAGCACGTTGATAGAAT+GGG | - | chr4_4:78917012-78917031 | None:intergenic | 35.0% |
| ! | TTACTAGCACGTTGATAGAA+TGG | - | chr4_4:78917013-78917032 | None:intergenic | 35.0% |
| TTCTGATGAAAGGTAGATGT+TGG | + | chr4_4:78917072-78917091 | Msa0706020:intron | 35.0% | |
| !! | GTTGGTAATAGACCAGTAAT+TGG | + | chr4_4:78917090-78917109 | Msa0706020:intron | 35.0% |
| ! | AATTGGCCTGAGATTACAAT+TGG | + | chr4_4:78917107-78917126 | Msa0706020:intron | 35.0% |
| AGCTCCATTTCACTTTCTTA+TGG | - | chr4_4:78917254-78917273 | None:intergenic | 35.0% | |
| ! | CTTCTTTTCAACTTGCAACT+GGG | - | chr4_4:78917340-78917359 | None:intergenic | 35.0% |
| ! | ACTTCTTTTCAACTTGCAAC+TGG | - | chr4_4:78917341-78917360 | None:intergenic | 35.0% |
| ! | TTAGCCTTTATTCCGAAAGA+GGG | + | chr4_4:78917474-78917493 | Msa0706020:CDS | 35.0% |
| AGAATATGTAGTAGAACCGA+TGG | - | chr4_4:78917532-78917551 | None:intergenic | 35.0% | |
| ! | ACATAACGGAAATGATGAGA+GGG | + | chr4_4:78917601-78917620 | Msa0706020:CDS | 35.0% |
| !! | GTTGACTTGTGTCTTGACTT+GGG | - | chr4_4:78914781-78914800 | None:intergenic | 40.0% |
| !! | TGTTGACTTGTGTCTTGACT+TGG | - | chr4_4:78914782-78914801 | None:intergenic | 40.0% |
| TAGGAAAGTAGCAAGAGATG+AGG | - | chr4_4:78914818-78914837 | None:intergenic | 40.0% | |
| AAACGTGAAACCCTTTGTGA+TGG | - | chr4_4:78914963-78914982 | None:intergenic | 40.0% | |
| ! | TTTGGAATTGTAACACCACC+AGG | - | chr4_4:78915125-78915144 | None:intergenic | 40.0% |
| AACCATGAAATGCGTCTTGT+AGG | + | chr4_4:78915460-78915479 | Msa0706020:CDS | 40.0% | |
| GGTCATTTCTGTGCTTCATT+TGG | + | chr4_4:78915496-78915515 | Msa0706020:CDS | 40.0% | |
| ! | TGTGCTTCATTTGGGTTATC+TGG | + | chr4_4:78915505-78915524 | Msa0706020:CDS | 40.0% |
| TGGTCGATGTATCAAAGACT+TGG | + | chr4_4:78915525-78915544 | Msa0706020:CDS | 40.0% | |
| ! | TCTAAGTTCTAACCTTGCCA+AGG | - | chr4_4:78915677-78915696 | None:intergenic | 40.0% |
| GCAATGGATGTCCAAATCTT+TGG | - | chr4_4:78915773-78915792 | None:intergenic | 40.0% | |
| TTCGGAACTCATGTGATAGT+CGG | + | chr4_4:78915919-78915938 | Msa0706020:intron | 40.0% | |
| ! | GGGGTTGCAGAATCTTTTTA+TGG | + | chr4_4:78916242-78916261 | Msa0706020:intron | 40.0% |
| ATGGTACATAAAAGGAAGGG+TGG | + | chr4_4:78916261-78916280 | Msa0706020:intron | 40.0% | |
| ! | TCGATATGACATCAGGTTGT+GGG | - | chr4_4:78916332-78916351 | None:intergenic | 40.0% |
| ! | ATCGATATGACATCAGGTTG+TGG | - | chr4_4:78916333-78916352 | None:intergenic | 40.0% |
| ! | AGATGCATCGATATGACATC+AGG | - | chr4_4:78916339-78916358 | None:intergenic | 40.0% |
| GGCTCATAAATCCATTTCCA+CGG | - | chr4_4:78916392-78916411 | None:intergenic | 40.0% | |
| CAAATCCATACTTACAGCGA+AGG | - | chr4_4:78916431-78916450 | None:intergenic | 40.0% | |
| ! | AGCCGACCTATCCTTTTATA+AGG | - | chr4_4:78916661-78916680 | None:intergenic | 40.0% |
| AACAGACAAACCTCCAATTG+AGG | + | chr4_4:78916787-78916806 | Msa0706020:intron | 40.0% | |
| AATTGATGGAGGTCCTCAAT+TGG | - | chr4_4:78916803-78916822 | None:intergenic | 40.0% | |
| ACGTATCTCGCTAAGTATAG+GGG | - | chr4_4:78916855-78916874 | None:intergenic | 40.0% | |
| GACGTATCTCGCTAAGTATA+GGG | - | chr4_4:78916856-78916875 | None:intergenic | 40.0% | |
| AGACGTATCTCGCTAAGTAT+AGG | - | chr4_4:78916857-78916876 | None:intergenic | 40.0% | |
| ATACTTAGCGAGATACGTCT+TGG | + | chr4_4:78916857-78916876 | Msa0706020:intron | 40.0% | |
| ! | AGATACGTCTTGGTTCTTAC+TGG | + | chr4_4:78916867-78916886 | Msa0706020:intron | 40.0% |
| !! | GGAAGCATCAAATGAATACC+TGG | + | chr4_4:78916888-78916907 | Msa0706020:intron | 40.0% |
| TGTAATCTCAGGCCAATTAC+TGG | - | chr4_4:78917105-78917124 | None:intergenic | 40.0% | |
| GCCTGAGATTACAATTGGAA+GGG | + | chr4_4:78917112-78917131 | Msa0706020:intron | 40.0% | |
| TCCCTTCCAATTGTAATCTC+AGG | - | chr4_4:78917116-78917135 | None:intergenic | 40.0% | |
| GTAAAGAAGTCAGATGCTGA+AGG | - | chr4_4:78917164-78917183 | None:intergenic | 40.0% | |
| TTGTACTGCACCAGTTGAAT+CGG | + | chr4_4:78917287-78917306 | Msa0706020:CDS | 40.0% | |
| ! | CTTAGCCTTTATTCCGAAAG+AGG | + | chr4_4:78917473-78917492 | Msa0706020:CDS | 40.0% |
| CTTTCCCTCTTTCGGAATAA+AGG | - | chr4_4:78917481-78917500 | None:intergenic | 40.0% | |
| TTATTCCGAAAGAGGGAAAG+AGG | + | chr4_4:78917481-78917500 | Msa0706020:CDS | 40.0% | |
| TATTCCGAAAGAGGGAAAGA+GGG | + | chr4_4:78917482-78917501 | Msa0706020:CDS | 40.0% | |
| ! | ACCTAGGCTTCAAAAGTATG+TGG | + | chr4_4:78917578-78917597 | Msa0706020:CDS | 40.0% |
| !!! | TCCACATACTTTTGAAGCCT+AGG | - | chr4_4:78917582-78917601 | None:intergenic | 40.0% |
| ! | GACATAACGGAAATGATGAG+AGG | + | chr4_4:78917600-78917619 | Msa0706020:CDS | 40.0% |
| CAAAGCTTTCTGCACAGAAT+GGG | + | chr4_4:78917661-78917680 | Msa0706020:CDS | 40.0% | |
| AGAGATGAGGAACAGTGACA+AGG | - | chr4_4:78914805-78914824 | None:intergenic | 45.0% | |
| TCAACAACACTGCCGTCATT+TGG | + | chr4_4:78915094-78915113 | Msa0706020:CDS | 45.0% | |
| CACCAGGAATCTCCAAATGA+CGG | - | chr4_4:78915109-78915128 | None:intergenic | 45.0% | |
| GCAAGGTGAGAACATCTGAA+TGG | - | chr4_4:78915193-78915212 | None:intergenic | 45.0% | |
| CTCCTACAAGACGCATTTCA+TGG | - | chr4_4:78915465-78915484 | None:intergenic | 45.0% | |
| AGTCTCTCGCTTATGATGGT+TGG | + | chr4_4:78915557-78915576 | Msa0706020:CDS | 45.0% | |
| CAGCGTCTTTGACATGATCA+TGG | - | chr4_4:78915630-78915649 | None:intergenic | 45.0% | |
| TCGGAACTCATGTGATAGTC+GGG | + | chr4_4:78915920-78915939 | Msa0706020:intron | 45.0% | |
| AACAGCTAGCACGAAGTTCA+TGG | + | chr4_4:78916035-78916054 | Msa0706020:intron | 45.0% | |
| CTCTACCTTCGCTGTAAGTA+TGG | + | chr4_4:78916423-78916442 | Msa0706020:intron | 45.0% | |
| AGTTTCAGCTACCGAGACAA+TGG | + | chr4_4:78916828-78916847 | Msa0706020:intron | 45.0% | |
| GTTTCAGCTACCGAGACAAT+GGG | + | chr4_4:78916829-78916848 | Msa0706020:intron | 45.0% | |
| GGCCTGAGATTACAATTGGA+AGG | + | chr4_4:78917111-78917130 | Msa0706020:intron | 45.0% | |
| AGTCAGATGCTGAAGGTGAA+TGG | - | chr4_4:78917157-78917176 | None:intergenic | 45.0% | |
| TCTGCAAGTGGTAAGGACTT+TGG | - | chr4_4:78917186-78917205 | None:intergenic | 45.0% | |
| AGACTGTCATCCGATTCAAC+TGG | - | chr4_4:78917300-78917319 | None:intergenic | 45.0% | |
| GACAGTCTTTCCATTGTCAC+AGG | + | chr4_4:78917312-78917331 | Msa0706020:CDS | 45.0% | |
| CTGCGCTTCTCCAAAGTTAT+TGG | + | chr4_4:78917375-78917394 | Msa0706020:CDS | 45.0% | |
| AAGGGTGGCACCAATAACTT+TGG | - | chr4_4:78917388-78917407 | None:intergenic | 45.0% | |
| ATTGGAGGATTGATCCCACT+CGG | - | chr4_4:78917421-78917440 | None:intergenic | 45.0% | |
| TGGGATCAATCCTCCAATCT+TGG | + | chr4_4:78917423-78917442 | Msa0706020:CDS | 45.0% | |
| GATCAATCCTCCAATCTTGG+CGG | + | chr4_4:78917426-78917445 | Msa0706020:CDS | 45.0% | |
| ATTCCGAAAGAGGGAAAGAG+GGG | + | chr4_4:78917483-78917502 | Msa0706020:CDS | 45.0% | |
| GCAAAGCTTTCTGCACAGAA+TGG | + | chr4_4:78917660-78917679 | Msa0706020:CDS | 45.0% | |
| !! | ATTAAAAAAAATATTTCATT+GGG | + | chr4_4:78916222-78916241 | Msa0706020:intron | 5.0% |
| TGCCGTCATTTGGAGATTCC+TGG | + | chr4_4:78915104-78915123 | Msa0706020:CDS | 50.0% | |
| CGTCATTTGGAGATTCCTGG+TGG | + | chr4_4:78915107-78915126 | Msa0706020:CDS | 50.0% | |
| AGATGTTCTCACCTTGCACC+AGG | + | chr4_4:78915196-78915215 | Msa0706020:CDS | 50.0% | |
| CTTGTAGGAGACACTGCATC+TGG | + | chr4_4:78915475-78915494 | Msa0706020:CDS | 50.0% | |
| AAGACGCTGTGCCATCATCA+TGG | + | chr4_4:78915641-78915660 | Msa0706020:CDS | 50.0% | |
| AGACGCTGTGCCATCATCAT+GGG | + | chr4_4:78915642-78915661 | Msa0706020:CDS | 50.0% | |
| ! | CTAACCTTGCCAAGGCATCA+GGG | - | chr4_4:78915669-78915688 | None:intergenic | 50.0% |
| ! | TCTAACCTTGCCAAGGCATC+AGG | - | chr4_4:78915670-78915689 | None:intergenic | 50.0% |
| CGGAACTCATGTGATAGTCG+GGG | + | chr4_4:78915921-78915940 | Msa0706020:intron | 50.0% | |
| TGATGGAGGTCCTCAATTGG+AGG | - | chr4_4:78916800-78916819 | None:intergenic | 50.0% | |
| AGTATAGGGGCCCATTGTCT+CGG | - | chr4_4:78916842-78916861 | None:intergenic | 50.0% | |
| ATGCAAGAGGGGAGACTTAC+TGG | - | chr4_4:78916959-78916978 | None:intergenic | 50.0% | |
| TGGAAGGGAGAAGAAGCAAC+CGG | + | chr4_4:78917127-78917146 | Msa0706020:intron | 50.0% | |
| TGCGTTGTCTGCAAGTGGTA+AGG | - | chr4_4:78917193-78917212 | None:intergenic | 50.0% | |
| GCATTTGCGTTGTCTGCAAG+TGG | - | chr4_4:78917198-78917217 | None:intergenic | 50.0% | |
| TTGGAGGATTGATCCCACTC+GGG | - | chr4_4:78917420-78917439 | None:intergenic | 50.0% | |
| AATAAAGGCTAAGACCCCCG+TGG | - | chr4_4:78917466-78917485 | None:intergenic | 50.0% | |
| TGACCCCTCTTTCCCTCTTT+CGG | - | chr4_4:78917489-78917508 | None:intergenic | 50.0% | |
| AAGAGGGGTCATCCAAAACC+AGG | + | chr4_4:78917498-78917517 | Msa0706020:CDS | 50.0% | |
| ! | ATGGTCACATCGCCTGGTTT+TGG | - | chr4_4:78917513-78917532 | None:intergenic | 50.0% |
| AAACCAGGCGATGTGACCAT+CGG | + | chr4_4:78917513-78917532 | Msa0706020:CDS | 50.0% | |
| ! | CAGTATCCTGGAGTGTCTTC+GGG | - | chr4_4:78917627-78917646 | None:intergenic | 50.0% |
| ! | CCAGTATCCTGGAGTGTCTT+CGG | - | chr4_4:78917628-78917647 | None:intergenic | 50.0% |
| CGAAGACACTCCAGGATACT+GGG | + | chr4_4:78917626-78917645 | Msa0706020:CDS | 50.0% | |
| GCATCAGGGTCCCATGATGA+TGG | - | chr4_4:78915655-78915674 | None:intergenic | 55.0% | |
| ATCATGGGACCCTGATGCCT+TGG | + | chr4_4:78915657-78915676 | Msa0706020:CDS | 55.0% | |
| TGTGATAGTCGGGGTGAGCA+TGG | + | chr4_4:78915930-78915949 | Msa0706020:intron | 55.0% | |
| GTGATAGTCGGGGTGAGCAT+GGG | + | chr4_4:78915931-78915950 | Msa0706020:intron | 55.0% | |
| AGGGAGAAGAAGCAACCGGT+TGG | + | chr4_4:78917131-78917150 | Msa0706020:intron | 55.0% | |
| GCTGAAGGTGAATGGCCAAC+CGG | - | chr4_4:78917149-78917168 | None:intergenic | 55.0% | |
| CAACTGGGCTCCTGTGACAA+TGG | - | chr4_4:78917325-78917344 | None:intergenic | 55.0% | |
| ! | TGGAGAAGCGCAGCCGTAAA+AGG | - | chr4_4:78917368-78917387 | None:intergenic | 55.0% |
| CCACTCGGGTGGTTTCTGAA+GGG | - | chr4_4:78917406-78917425 | None:intergenic | 55.0% | |
| CCTTCAGAAACCACCCGAGT+GGG | + | chr4_4:78917404-78917423 | Msa0706020:CDS | 55.0% | |
| GCTGAAACCGCCAAGATTGG+AGG | - | chr4_4:78917436-78917455 | None:intergenic | 55.0% | |
| GCTGCTGAAACCGCCAAGAT+TGG | - | chr4_4:78917439-78917458 | None:intergenic | 55.0% | |
| CGGTTTCAGCAGCAAGTCCA+CGG | + | chr4_4:78917446-78917465 | Msa0706020:CDS | 55.0% | |
| GGTTTCAGCAGCAAGTCCAC+GGG | + | chr4_4:78917447-78917466 | Msa0706020:CDS | 55.0% | |
| GTTTCAGCAGCAAGTCCACG+GGG | + | chr4_4:78917448-78917467 | Msa0706020:CDS | 55.0% | |
| TTTCAGCAGCAAGTCCACGG+GGG | + | chr4_4:78917449-78917468 | Msa0706020:CDS | 55.0% | |
| TGAAGCCTAGGTGTACGCAC+TGG | - | chr4_4:78917570-78917589 | None:intergenic | 55.0% | |
| CCGAAGACACTCCAGGATAC+TGG | + | chr4_4:78917625-78917644 | Msa0706020:CDS | 55.0% | |
| CCAGACACAACCCAGTATCC+TGG | - | chr4_4:78917639-78917658 | None:intergenic | 55.0% | |
| CCAGGATACTGGGTTGTGTC+TGG | + | chr4_4:78917636-78917655 | Msa0706020:CDS | 55.0% | |
| ATAGTCGGGGTGAGCATGGG+AGG | + | chr4_4:78915934-78915953 | Msa0706020:intron | 60.0% | |
| TAGTCGGGGTGAGCATGGGA+GGG | + | chr4_4:78915935-78915954 | Msa0706020:intron | 60.0% | |
| ! | CTCGGGTGGTTTCTGAAGGG+TGG | - | chr4_4:78917403-78917422 | None:intergenic | 60.0% |
| CCCTTCAGAAACCACCCGAG+TGG | + | chr4_4:78917403-78917422 | Msa0706020:CDS | 60.0% | |
| CCCACTCGGGTGGTTTCTGA+AGG | - | chr4_4:78917407-78917426 | None:intergenic | 60.0% | |
| GAGGATTGATCCCACTCGGG+TGG | - | chr4_4:78917417-78917436 | None:intergenic | 60.0% | |
| GAACCGATGGTCACATCGCC+TGG | - | chr4_4:78917519-78917538 | None:intergenic | 60.0% | |
| ! | CTAGGTGTACGCACTGGTGC+AGG | - | chr4_4:78917564-78917583 | None:intergenic | 60.0% |
| CTGCACCAGTGCGTACACCT+AGG | + | chr4_4:78917562-78917581 | Msa0706020:CDS | 60.0% | |
| GGGACCCTGATGCCTTGGCA+AGG | + | chr4_4:78915662-78915681 | Msa0706020:CDS | 65.0% | |
| AGAGGGCCCGAAGACACTCC+AGG | + | chr4_4:78917618-78917637 | Msa0706020:CDS | 65.0% | |
| CGGGGTGAGCATGGGAGGGA+AGG | + | chr4_4:78915939-78915958 | Msa0706020:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 78914774 | 78917752 | 78914774 | ID=Msa0706020;Name=Msa0706020 |
| chr4_4 | mRNA | 78914774 | 78917752 | 78914774 | ID=Msa0706020-mRNA-1;Parent=Msa0706020;Name=Msa0706020-mRNA-1;_AED=0.44;_eAED=0.44;_QI=180|0.5|0.66|1|1|1|3|0|337 |
| chr4_4 | exon | 78914774 | 78915217 | 78914774 | ID=Msa0706020-mRNA-1:exon:25287;Parent=Msa0706020-mRNA-1 |
| chr4_4 | exon | 78915445 | 78915683 | 78915445 | ID=Msa0706020-mRNA-1:exon:25288;Parent=Msa0706020-mRNA-1 |
| chr4_4 | exon | 78917242 | 78917752 | 78917242 | ID=Msa0706020-mRNA-1:exon:25289;Parent=Msa0706020-mRNA-1 |
| chr4_4 | five_prime_UTR | 78914774 | 78914953 | 78914774 | ID=Msa0706020-mRNA-1:five_prime_utr;Parent=Msa0706020-mRNA-1 |
| chr4_4 | CDS | 78914954 | 78915217 | 78914954 | ID=Msa0706020-mRNA-1:cds;Parent=Msa0706020-mRNA-1 |
| chr4_4 | CDS | 78915445 | 78915683 | 78915445 | ID=Msa0706020-mRNA-1:cds;Parent=Msa0706020-mRNA-1 |
| chr4_4 | CDS | 78917242 | 78917752 | 78917242 | ID=Msa0706020-mRNA-1:cds;Parent=Msa0706020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
