AlfalfaGEDB | Msa0363530

M. sativa cultivar zhongmu-4 / Msa0363530

KEGG: -
GO: -
PFAM: PF01582.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363530	XP_039687174.1	80.989	1052	188	5	8	1052	12	1058	0.0	1703

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363530	sp\|V9M398\|RUN1_VITRO	40.502	916	479	19	15	891	27	915	0.0	574

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363530	A0A396ISP4	80.989	1052	188	5	8	1052	12	1058	0.0	1703

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0363530	0.813824	2.104621e-51	-8.615850e-47
Msa0044090	Msa0363530	0.811371	7.240729e-51	-8.615850e-47
Msa0045790	Msa0363530	0.807671	4.510341e-50	-8.615850e-47
Msa0046160	Msa0363530	0.805170	1.518882e-49	-8.615850e-47
Msa0077400	Msa0363530	0.807426	5.083513e-50	-8.615850e-47
Msa0090320	Msa0363530	0.810222	1.282964e-50	-8.615850e-47
Msa0137640	Msa0363530	0.809752	1.619863e-50	-8.615850e-47
Msa0142220	Msa0363530	0.803691	3.088608e-49	-8.615850e-47
Msa0182740	Msa0363530	0.812254	4.650950e-51	-8.615850e-47
Msa0211150	Msa0363530	0.803465	3.441570e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0363530	MtrunA17_Chr3g0102281	80.989	1052	188	5	8	1052	12	1058	1703
Msa0363530	MtrunA17_Chr3g0102171	79.774	1063	195	8	8	1056	12	1068	1674
Msa0363530	MtrunA17_Chr3g0102271	79.323	1064	196	9	8	1056	12	1066	1665
Msa0363530	MtrunA17_Chr3g0102131	75.228	1098	239	8	8	1079	12	1102	1590
Msa0363530	MtrunA17_Chr3g0102261	76.564	1071	225	7	11	1058	15	1082	1588
Msa0363530	MtrunA17_Chr3g0102121	75.520	1058	243	7	11	1055	15	1069	1583
Msa0363530	MtrunA17_Chr4g0018431	59.832	1073	394	16	9	1056	15	1075	1182
Msa0363530	MtrunA17_Chr3g0118981	58.185	1069	400	18	2	1042	10	1059	1123
Msa0363530	MtrunA17_Chr2g0298531	53.516	1095	451	15	2	1058	9	1083	1052
Msa0363530	MtrunA17_Chr2g0298291	54.278	1087	434	17	2	1054	9	1066	1051

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363530	AT5G17680.2	39.013	892	493	12	14	881	17	881	0.0	574
Msa0363530	AT5G17680.2	26.316	475	260	20	583	975	711	1177	6.36e-13	73.9
Msa0363530	AT5G17680.1	38.901	892	493	13	14	881	17	880	0.0	567
Msa0363530	AT5G17680.1	26.316	475	260	20	583	975	710	1176	5.94e-13	73.9
Msa0363530	AT5G49140.1	35.061	984	558	17	14	973	14	940	5.73e-172	531
Msa0363530	AT5G41540.1	36.052	932	515	16	13	921	9	882	2.66e-167	520
Msa0363530	AT5G41550.1	34.091	968	561	22	4	948	2	915	3.94e-162	508
Msa0363530	AT5G41750.1	35.048	933	538	15	4	921	2	881	8.30e-162	507
Msa0363530	AT5G41750.2	35.048	933	538	15	4	921	2	881	8.30e-162	507
Msa0363530	AT5G40910.1	35.246	976	562	22	13	975	10	928	7.90e-159	500

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Find 205 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATTCAATGCTAAAA+TGG	0.312507	3_1:-56079356	Msa0363530:CDS
AAAACTATGCTTCCTCAAAA+TGG	0.305839	3_1:-56082543	Msa0363530:CDS
AAAATCCATAATATATCTAG+AGG	0.588083	3_1:-56080326	Msa0363530:CDS
AAAATTGATGGTCTGGGACC+AGG	0.525717	3_1:-56081208	Msa0363530:CDS
AAACCACAAAAGCTATATTT+TGG	0.189377	3_1:+56079072	None:intergenic
AAACTTAGATGTTTGAGCCG+TGG	0.567485	3_1:+56079780	None:intergenic
AAAGAAAATTGAAACCTTTA+TGG	0.101091	3_1:-56082656	Msa0363530:CDS
AAAGCTCTGGGATGGAGTTC+AGG	0.361150	3_1:-56080150	Msa0363530:intron
AAATCAATGCATTATGTCTG+AGG	0.618478	3_1:-56079461	Msa0363530:CDS
AAATTGTATGCCATCAAGGA+TGG	0.557928	3_1:+56079437	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGAAAAACCCATTTACTT+AGG	-	chr3_1:56078669-56078688	Msa0363530:CDS	30.0%
GTTATGCAATCCTAAGTAAA+TGG	+	chr3_1:56078682-56078701	None:intergenic	30.0%
AGAATTCAATTCAAGCAACA+AGG	+	chr3_1:56079037-56079056	None:intergenic	30.0%
TCTTCACTTAATCTGAGTTA+AGG	-	chr3_1:56079075-56079094	Msa0363530:CDS	30.0%
TCTGAGTTAAGGTTCTTTAT+TGG	-	chr3_1:56079086-56079105	Msa0363530:CDS	30.0%
CTGAGTTAAGGTTCTTTATT+GGG	-	chr3_1:56079087-56079106	Msa0363530:CDS	30.0%
AAAACTATGCTTCCTCAAAA+TGG	-	chr3_1:56079858-56079877	Msa0363530:CDS	30.0%
GGATCTATGTTGTAAAAAAC+AGG	+	chr3_1:56079944-56079963	None:intergenic	30.0%
TTCATTTCCAATCACGAATA+TGG	+	chr3_1:56080267-56080286	None:intergenic	30.0%
AATAAACAGGCCCAATTATT+TGG	-	chr3_1:56080327-56080346	Msa0363530:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	56078615	56083808	56078615	ID=Msa0363530;Name=Msa0363530
chr3_1	mRNA	56078615	56083808	56078615	ID=Msa0363530-mRNA-1;Parent=Msa0363530;Name=Msa0363530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=241\|1\|0.8\|1\|0.75\|0.6\|5\|0\|1079
chr3_1	exon	56078615	56079949	56078615	ID=Msa0363530-mRNA-1:exon:10249;Parent=Msa0363530-mRNA-1
chr3_1	exon	56080151	56080450	56080151	ID=Msa0363530-mRNA-1:exon:10248;Parent=Msa0363530-mRNA-1
chr3_1	exon	56080571	56081681	56080571	ID=Msa0363530-mRNA-1:exon:10247;Parent=Msa0363530-mRNA-1
chr3_1	exon	56082304	56082850	56082304	ID=Msa0363530-mRNA-1:exon:10246;Parent=Msa0363530-mRNA-1
chr3_1	exon	56083621	56083808	56083621	ID=Msa0363530-mRNA-1:exon:10245;Parent=Msa0363530-mRNA-1
chr3_1	five_prime_UTR	56083621	56083808	56083621	ID=Msa0363530-mRNA-1:five_prime_utr;Parent=Msa0363530-mRNA-1
chr3_1	five_prime_UTR	56082798	56082850	56082798	ID=Msa0363530-mRNA-1:five_prime_utr;Parent=Msa0363530-mRNA-1
chr3_1	CDS	56082304	56082797	56082304	ID=Msa0363530-mRNA-1:cds;Parent=Msa0363530-mRNA-1
chr3_1	CDS	56080571	56081681	56080571	ID=Msa0363530-mRNA-1:cds;Parent=Msa0363530-mRNA-1
chr3_1	CDS	56080151	56080450	56080151	ID=Msa0363530-mRNA-1:cds;Parent=Msa0363530-mRNA-1
chr3_1	CDS	56078615	56079949	56078615	ID=Msa0363530-mRNA-1:cds;Parent=Msa0363530-mRNA-1

Gene Sequence

>Msa0363530

ATGAGCAGTGCTTTTTCCTCTGATGTGGTGCCTCAGAAAAAATATGACGTTTTTCTTAGCTTTCGAGGTGAGGATACTCGCAGAAACTTCACAAGCCATCTTTATGATGCTCTAAGCCGAAAGAAAATTGAAACCTTTATGGACAACAATGAGCTTCAAAAAGGAGATGAGATCTCGCCAGCACTCATCAAAGCCATTGAGGAGTCACATGCATCTATTGTCATCTTCTCAGAAAACTATGCTTCCTCAAAATGGTGCTTAAATGAGCTCAAAGAGATTCTTGAATGCAAAAAATATAGGGAACATATTGTGATACCTGTTTTTTACAACATAGATCCATCACATGTGAGGAAGCAGACTGGGAGTTACCAGCAAGCCTTCGCAAAACATAAGCGAGATTTGAAACACAATAATGATAACTATAAGTTGGAGAAATGGAAAGCTGCTCTCACTGATGCAGCTAATTTAGTTGGTTGGGACTCTCGAAATTATAGGAGTGAACCAGACTTCATTAAGGACATTGTTGAAGATGTTTTGCGGAAACTGAATCTTAGGTACCCATATGAAATTAAGGGGCTTGTTGGAATTGAGAAAAATTACGAACAAATTGATTCAATGTTGGAAATTGGGTCAAATGATGTTAGAGTCCTTGGAATATGGGGCATGGGTGGAATAGGGAAGACCACCCTTGCTAAGACATTATATGCTAAACTTTTTTCCCAATTCGAAGGTCGTTGCTTCCTCAATGTAATGGATGAATCAAACAAGTATGGACTCAATGTTCTACACAATAAACTTTTGTCTTCATTGTTGGAGGAAGAAAATATTCATCCCGATGCATACTACATAGAAGCCCCATTCTCCGAGAGAAGGATCGGGCGTAAAAAAGTTTTAATTGTTTTGGATGGTGTAGAAACCGTAGAGCAAATAGAAGATCTTATCCTAAAAATTGATGGTCTGGGACCAGGTAGTAGGGTCATTATTACAACTAGAGATAAGCACATATTTAGTCAGTTGAGTAAATGTGAAATATATGAGGTTAAGGAATTGAATAAGCATGATTCTTTTCAGCTATTCAGTTTGACTGCCTTCAAAGAAAAACATCCTAAAATTGGATATGAAGATCTATCAGAAAGTGTAATTGCCTATTGCAAAGGTAACCCTCTGGCATTAAAAGTTTTAGGTGCAAATCTCAGTTCAAGGGGCCAAGAATCATGGGAAAATGAATTGAAAAAGATCCAAAAGATTCCCAATCGAAAAATTTATGATGTGTTAAAATTGAGTTATGATGACTTAGATCGTTGTCAAAAGGCCATATTTCTAGACATCGCATGCTTGTTGAGAGAAGAGAGTAAGGATTTTGTAAGAGATCTGTTGGAAGCTTGTGAGTTCTTTGCAATAAGCGGTATAGAAGTGCTTCTAGATAAAGCTCTCATACAACTAAAACTGGTTTGGCTTTACAATTCGGGTGTTGATGGTATAGAAATGCATGATTTGTTACAAGAAATGGGACGGGAGATTGTTAATCAAGAATCTGAAGACCCTGGAAAACGAAGTCGACTGTGGAAAACTGAAGAGATATTTGATGTATTGAAAAATAACAAGGGAACTGAAGCTGTCGAAGGGATAACATTCGATAGTACAGATGTGGGGGATCTTTACTTGAAGTCTAATTCCTTTAGAAGGATGACAAATTTAAGATATCTTAAAATCCATAATATATCTAGAGGAAGCACATGCAATGTGTACTTTCCCGATGGTCTTGAGTGGATTTCTGATAAATTGAGGTACCTTCGATGGGATGGATACTGTCTTGAGTCTTTGCCATCAACCTTTTGTGCTGAAAAGCTCGTAGTGCTTCACATGAGTCATAGCAAGCTTAAAAAGCTCTGGGATGGAGTTCAGAATCTTGTGAATCTAAACGTACTTTGGCTTGAATCCTCCAAAGATCTGATTGAGATCCCAGACTTATCCAGTGCTACAAATCTCGAACGTGTATATCTTCAAGGATGTGAAAGCCTGCGTGAGCTCCATCCAGCCATCTTGTCTCTCCCACGGCTCAAACATCTAAGTTTAGGAGGCTGCAAAAAGCTTGAAAGCCTTAAAACCAACATTCATTCAATGTCTCTCTGTGAAGTCTTACTCGATGGTTGTTCATCTCTCACGGAATTTTCGGTGACATCGGAGAAAATGACAAAGTTATCCTTACATGGTACTTCCATACATGAATTGTCTTCATCAATTTGGCTTAATACCAAACTTACTGTTCTTGACCTAGCTGAATGTAACAAGCTGAACATTGTTGGGAATAAGTTATCAGATGATCATGGAATGGGGTCTGTTACAGAGCTAGACCTTTCAGGGTGCACAGAAATCAATGCATTATGTCTGAGGTCCATCCTTGATGGCATACAATTTTTAAAACGGCTAATATTGAATGAGTGTTGCAACTTAGAATGTCTCCCTGAGAACATACAAAACCATTCAATGCTAAAATGGCTTGATTTAGATGATTGCAGGAAACTTGTGTCTCTAACAGAGCTTCCACCATCCATATTATATTTGAAAGCCGTTAACTGCACTTATCTGGACACAGACTCCACTCAACGGTCATTGCTTGAGAATATGGTACAAACCTTCTCTAAAGACCCTTTTTATGAAGATGAAGGTGATTATAATTTTTCTTTCTTGCCAGGAGCACGAGTTCCAAGCAAGTTTGATTTTCAAACAATAGAGGCTTCAATAGCCATTCCTCCTATTCCAAAATATAGCTTTTGTGGTTTCATATTTTGCATCATTCTTAACCAGGGCTTATATGGTTACCACAACCTTCATTGTATCATCTTTGATCACGGCAAAGAAGTCGACAGACGTCGTATTAGTTGCAATTATCTTGGGACATTAATTTCGGATCATGTATTGATATGTTGGCATCGTTACAAAAGACAAAAAAGTGAAAGTAATGATTGCAACTTATCATTTCAATTCATTCTTCAAGGTCCAGATAAGGAATTGTGGTGGTCAAAGGAGGGGATAAAGGGGTGTGGGGTCTTACCTGTCTATGCCTTAAAACGTCAGTTGGGGCTGGATGATGGTAGTAGTAGTGACGAAACTGTTGAAAGTGAATTCAGAAACAATGAAAATGAAGATGACCAGGAACAACCTTCTATTAGTAGACCTCCTATCAAACATGTCTATGTTAGACGCAGGCGCAAAATAATTAGACCCAAGTTTGTGTAA

Protein sequence

>Msa0363530

MSSAFSSDVVPQKKYDVFLSFRGEDTRRNFTSHLYDALSRKKIETFMDNNELQKGDEISPALIKAIEESHASIVIFSENYASSKWCLNELKEILECKKYREHIVIPVFYNIDPSHVRKQTGSYQQAFAKHKRDLKHNNDNYKLEKWKAALTDAANLVGWDSRNYRSEPDFIKDIVEDVLRKLNLRYPYEIKGLVGIEKNYEQIDSMLEIGSNDVRVLGIWGMGGIGKTTLAKTLYAKLFSQFEGRCFLNVMDESNKYGLNVLHNKLLSSLLEEENIHPDAYYIEAPFSERRIGRKKVLIVLDGVETVEQIEDLILKIDGLGPGSRVIITTRDKHIFSQLSKCEIYEVKELNKHDSFQLFSLTAFKEKHPKIGYEDLSESVIAYCKGNPLALKVLGANLSSRGQESWENELKKIQKIPNRKIYDVLKLSYDDLDRCQKAIFLDIACLLREESKDFVRDLLEACEFFAISGIEVLLDKALIQLKLVWLYNSGVDGIEMHDLLQEMGREIVNQESEDPGKRSRLWKTEEIFDVLKNNKGTEAVEGITFDSTDVGDLYLKSNSFRRMTNLRYLKIHNISRGSTCNVYFPDGLEWISDKLRYLRWDGYCLESLPSTFCAEKLVVLHMSHSKLKKLWDGVQNLVNLNVLWLESSKDLIEIPDLSSATNLERVYLQGCESLRELHPAILSLPRLKHLSLGGCKKLESLKTNIHSMSLCEVLLDGCSSLTEFSVTSEKMTKLSLHGTSIHELSSSIWLNTKLTVLDLAECNKLNIVGNKLSDDHGMGSVTELDLSGCTEINALCLRSILDGIQFLKRLILNECCNLECLPENIQNHSMLKWLDLDDCRKLVSLTELPPSILYLKAVNCTYLDTDSTQRSLLENMVQTFSKDPFYEDEGDYNFSFLPGARVPSKFDFQTIEASIAIPPIPKYSFCGFIFCIILNQGLYGYHNLHCIIFDHGKEVDRRRISCNYLGTLISDHVLICWHRYKRQKSESNDCNLSFQFILQGPDKELWWSKEGIKGCGVLPVYALKRQLGLDDGSSSDETVESEFRNNENEDDQEQPSISRPPIKHVYVRRRRKIIRPKFV*