Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419670 | XP_013461062.1 | 90.836 | 622 | 45 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419670 | sp|Q9SU72|EDS1C_ARATH | 39.280 | 639 | 312 | 15 | 13 | 609 | 9 | 613 | 1.94e-140 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419670 | A0A072V056 | 90.836 | 622 | 45 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055740 | Msa0419670 | 0.806229 | 9.102006e-50 | -8.615850e-47 |
| Msa0077400 | Msa0419670 | 0.828202 | 1.024659e-54 | -8.615850e-47 |
| Msa0092410 | Msa0419670 | 0.821374 | 4.177819e-53 | -8.615850e-47 |
| Msa0186320 | Msa0419670 | 0.816575 | 5.152613e-52 | -8.615850e-47 |
| Msa0187830 | Msa0419670 | 0.809602 | 1.745141e-50 | -8.615850e-47 |
| Msa0204840 | Msa0419670 | 0.808605 | 2.852490e-50 | -8.615850e-47 |
| Msa0215590 | Msa0419670 | 0.811652 | 6.289970e-51 | -8.615850e-47 |
| Msa0227340 | Msa0419670 | 0.806493 | 8.008030e-50 | -8.615850e-47 |
| Msa0229590 | Msa0419670 | 0.832150 | 1.114027e-55 | -8.615850e-47 |
| Msa0371460 | Msa0419670 | 0.882915 | 6.979532e-71 | -8.615850e-47 |
| Msa0371950 | Msa0419670 | 0.806197 | 9.244965e-50 | -8.615850e-47 |
| Msa0377800 | Msa0419670 | 0.813937 | 1.987906e-51 | -8.615850e-47 |
| Msa0394140 | Msa0419670 | 0.809939 | 1.476813e-50 | -8.615850e-47 |
| Msa0419670 | Msa0443020 | 0.853333 | 2.561721e-61 | -8.615850e-47 |
| Msa0419670 | Msa0450180 | 0.867679 | 1.145675e-65 | -8.615850e-47 |
| Msa0419670 | Msa0455760 | 0.821240 | 4.484824e-53 | -8.615850e-47 |
| Msa0419670 | Msa0466010 | 0.839007 | 2.049166e-57 | -8.615850e-47 |
| Msa0419670 | Msa0472910 | 0.800128 | 1.666592e-48 | -8.615850e-47 |
| Msa0419670 | Msa0476330 | 0.804937 | 1.699475e-49 | -8.615850e-47 |
| Msa0419670 | Msa0490380 | 0.816702 | 4.824910e-52 | -8.615850e-47 |
| Msa0419670 | Msa0501410 | 0.806389 | 8.424918e-50 | -8.615850e-47 |
| Msa0419670 | Msa0506300 | 0.827447 | 1.556825e-54 | -8.615850e-47 |
| Msa0419670 | Msa0506860 | 0.838535 | 2.714744e-57 | -8.615850e-47 |
| Msa0419670 | Msa0511620 | 0.895902 | 6.160635e-76 | -8.615850e-47 |
| Msa0419670 | Msa0517570 | 0.800384 | 1.478428e-48 | -8.615850e-47 |
| Msa0419670 | Msa0534880 | 0.841816 | 3.777501e-58 | -8.615850e-47 |
| Msa0419670 | Msa0559510 | 0.820886 | 5.410769e-53 | -8.615850e-47 |
| Msa0419670 | Msa0562660 | 0.806394 | 8.402476e-50 | -8.615850e-47 |
| Msa0419670 | Msa0574570 | 0.817026 | 4.082566e-52 | -8.615850e-47 |
| Msa0419670 | Msa0574600 | 0.817410 | 3.346053e-52 | -8.615850e-47 |
| Msa0419670 | Msa0580920 | 0.824550 | 7.595838e-54 | -8.615850e-47 |
| Msa0419670 | Msa0615010 | 0.804965 | 1.676633e-49 | -8.615850e-47 |
| Msa0419670 | Msa0631330 | 0.814017 | 1.908062e-51 | -8.615850e-47 |
| Msa0419670 | Msa0661720 | 0.825447 | 4.663447e-54 | -8.615850e-47 |
| Msa0419670 | Msa0678130 | 0.809006 | 2.342039e-50 | -8.615850e-47 |
| Msa0419670 | Msa0706020 | 0.802132 | 6.486592e-49 | -8.615850e-47 |
| Msa0419670 | Msa0708310 | 0.825756 | 3.940133e-54 | -8.615850e-47 |
| Msa0419670 | Msa0780350 | 0.803308 | 3.709643e-49 | -8.615850e-47 |
| Msa0419670 | Msa0786980 | 0.849253 | 3.640760e-60 | -8.615850e-47 |
| Msa0419670 | Msa0828240 | 0.815519 | 8.870864e-52 | -8.615850e-47 |
| Msa0419670 | Msa0870060 | 0.826400 | 2.770452e-54 | -8.615850e-47 |
| Msa0419670 | Msa0898910 | 0.804100 | 2.540574e-49 | -8.615850e-47 |
| Msa0419670 | Msa0935770 | 0.808550 | 2.931281e-50 | -8.615850e-47 |
| Msa0419670 | Msa0936390 | 0.807590 | 4.692237e-50 | -8.615850e-47 |
| Msa0419670 | Msa0936530 | 0.840140 | 1.040182e-57 | -8.615850e-47 |
| Msa0419670 | Msa0936550 | 0.826858 | 2.153675e-54 | -8.615850e-47 |
| Msa0419670 | Msa0958070 | 0.803042 | 4.210043e-49 | -8.615850e-47 |
| Msa0419670 | Msa0958080 | 0.858522 | 7.775381e-63 | -8.615850e-47 |
| Msa0419670 | Msa0961360 | 0.821165 | 4.667081e-53 | -8.615850e-47 |
| Msa0419670 | Msa0964490 | 0.830791 | 2.406857e-55 | -8.615850e-47 |
| Msa0419670 | Msa0972770 | 0.853423 | 2.413838e-61 | -8.615850e-47 |
| Msa0419670 | Msa0972810 | 0.808438 | 3.096899e-50 | -8.615850e-47 |
| Msa0419670 | Msa0973520 | 0.823237 | 1.543409e-53 | -8.615850e-47 |
| Msa0419670 | Msa0976290 | 0.809495 | 1.840017e-50 | -8.615850e-47 |
| Msa0419670 | Msa0982780 | 0.819587 | 1.074211e-52 | -8.615850e-47 |
| Msa0419670 | Msa0992640 | 0.849089 | 4.043392e-60 | -8.615850e-47 |
| Msa0419670 | Msa0992680 | 0.865061 | 7.757148e-65 | -8.615850e-47 |
| Msa0419670 | Msa1043120 | 0.801704 | 7.943034e-49 | -8.615850e-47 |
| Msa0419670 | Msa1073660 | 0.833928 | 4.023034e-56 | -8.615850e-47 |
| Msa0419670 | Msa1084640 | 0.840756 | 7.180419e-58 | -8.615850e-47 |
| Msa0419670 | Msa1173490 | 0.801184 | 1.015071e-48 | -8.615850e-47 |
| Msa0419670 | Msa1201200 | 0.823448 | 1.377778e-53 | -8.615850e-47 |
| Msa0419670 | Msa1201230 | 0.817012 | 4.110881e-52 | -8.615850e-47 |
| Msa0419670 | Msa1203350 | 0.819653 | 1.037176e-52 | -8.615850e-47 |
| Msa0419670 | Msa1236730 | 0.807569 | 4.741409e-50 | -8.615850e-47 |
| Msa0419670 | Msa1252960 | 0.820876 | 5.440376e-53 | -8.615850e-47 |
| Msa0419670 | Msa1255650 | 0.800777 | 1.229382e-48 | -8.615850e-47 |
| Msa0419670 | Msa1305530 | 0.814558 | 1.449595e-51 | -8.615850e-47 |
| Msa0419670 | Msa1353890 | 0.815652 | 8.285215e-52 | -8.615850e-47 |
| Msa0419670 | Msa1400340 | 0.842486 | 2.511106e-58 | -8.615850e-47 |
| Msa0419670 | Msa1408180 | 0.829438 | 5.147451e-55 | -8.615850e-47 |
| Msa0419670 | Msa1416730 | 0.854165 | 1.476019e-61 | -8.615850e-47 |
| Msa0419670 | Msa1418280 | 0.812002 | 5.277492e-51 | -8.615850e-47 |
| Msa0419670 | Msa1424630 | 0.826874 | 2.135136e-54 | -8.615850e-47 |
| Msa0419670 | Msa1428070 | 0.833597 | 4.866496e-56 | -8.615850e-47 |
| Msa0419670 | Msa1430550 | 0.836004 | 1.206570e-56 | -8.615850e-47 |
| Msa0419670 | Msa1448980 | 0.825297 | 5.063009e-54 | -8.615850e-47 |
| Msa0419670 | Msa1458510 | 0.828559 | 8.405406e-55 | -8.615850e-47 |
| Msa0419670 | Msa1459100 | 0.806738 | 7.111286e-50 | -8.615850e-47 |
| Msa0244880 | Msa0419670 | 0.821150 | 4.705318e-53 | -8.615850e-47 |
| Msa0264830 | Msa0419670 | 0.823550 | 1.303972e-53 | -8.615850e-47 |
| Msa0269560 | Msa0419670 | 0.828548 | 8.458566e-55 | -8.615850e-47 |
| Msa0271550 | Msa0419670 | 0.857477 | 1.589059e-62 | -8.615850e-47 |
| Msa0283470 | Msa0419670 | 0.821642 | 3.622346e-53 | -8.615850e-47 |
| Msa0283500 | Msa0419670 | 0.808847 | 2.532457e-50 | -8.615850e-47 |
| Msa0302870 | Msa0419670 | 0.816820 | 4.539624e-52 | -8.615850e-47 |
| Msa0319290 | Msa0419670 | 0.811142 | 8.117182e-51 | -8.615850e-47 |
| Msa0331980 | Msa0419670 | 0.814371 | 1.593737e-51 | -8.615850e-47 |
| Msa0333650 | Msa0419670 | 0.816223 | 6.178980e-52 | -8.615850e-47 |
| Msa0340340 | Msa0419670 | 0.817132 | 3.864316e-52 | -8.615850e-47 |
| Msa0348550 | Msa0419670 | 0.828340 | 9.495206e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419670 | MtrunA17_Chr3g0118251 | 90.836 | 622 | 45 | 3 | 1 | 614 | 1 | 618 | 0.0 | 1166 |
| Msa0419670 | MtrunA17_Chr3g0118541 | 51.294 | 618 | 272 | 12 | 13 | 614 | 22 | 626 | 0.0 | 592 |
| Msa0419670 | MtrunA17_Chr8g0384621 | 24.633 | 613 | 366 | 23 | 34 | 598 | 43 | 607 | 5.91e-48 | 177 |
| Msa0419670 | MtrunA17_Chr3g0107671 | 26.816 | 358 | 205 | 17 | 272 | 597 | 209 | 541 | 2.93e-21 | 97.8 |
| Msa0419670 | MtrunA17_Chr6g0451541 | 24.011 | 354 | 219 | 13 | 271 | 595 | 210 | 542 | 1.68e-19 | 92.4 |
| Msa0419670 | MtrunA17_Chr6g0451531 | 24.863 | 366 | 202 | 17 | 271 | 596 | 210 | 542 | 7.81e-16 | 80.9 |
| Msa0419670 | MtrunA17_Chr6g0451561 | 24.523 | 367 | 194 | 15 | 274 | 596 | 213 | 540 | 1.14e-15 | 80.5 |
| Msa0419670 | MtrunA17_Chr6g0451511 | 23.743 | 358 | 217 | 14 | 272 | 597 | 209 | 542 | 2.05e-14 | 76.3 |
| Msa0419670 | MtrunA17_Chr8g0338691 | 41.379 | 87 | 48 | 1 | 112 | 195 | 225 | 311 | 4.10e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419670 | AT3G48090.1 | 39.280 | 639 | 312 | 15 | 13 | 609 | 9 | 613 | 1.98e-141 | 425 |
| Msa0419670 | AT3G48080.1 | 37.891 | 607 | 315 | 15 | 35 | 603 | 29 | 611 | 1.37e-131 | 400 |
| Msa0419670 | AT3G48090.2 | 41.604 | 536 | 243 | 12 | 112 | 609 | 2 | 505 | 3.84e-129 | 389 |
| Msa0419670 | AT3G52430.1 | 25.926 | 351 | 203 | 13 | 264 | 580 | 175 | 502 | 4.00e-24 | 107 |
| Msa0419670 | AT3G52430.1 | 44.000 | 75 | 38 | 2 | 119 | 193 | 112 | 182 | 6.55e-11 | 65.5 |
| Msa0419670 | AT5G14930.2 | 27.928 | 222 | 133 | 6 | 398 | 597 | 293 | 509 | 5.76e-15 | 78.6 |
Find 134 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATATCTTTGAATCTT+TGG | 0.137148 | 3_2:-67813184 | None:intergenic |
| CCAAAGATTCAAAGATATTT+TGG | 0.139370 | 3_2:+67813184 | Msa0419670:CDS |
| TGTCTATATTATATAAATTT+AGG | 0.156421 | 3_2:+67816055 | Msa0419670:three_prime_UTR |
| GTTACTCAGAATCATGTTTA+TGG | 0.160363 | 3_2:+67815637 | Msa0419670:CDS |
| TAATGCATGATTGTTCTTTA+TGG | 0.162207 | 3_2:-67815845 | None:intergenic |
| GGGATACGATCGGAAGATTT+TGG | 0.194261 | 3_2:-67813964 | None:intergenic |
| TTCTTCCCTTCCAAGTCTTC+TGG | 0.229215 | 3_2:-67815435 | None:intergenic |
| CCTCCCATCTGCATTACTTT+TGG | 0.239470 | 3_2:+67813985 | Msa0419670:CDS |
| ACATTTGCTTGGAAATCTTC+TGG | 0.239841 | 3_2:-67815348 | None:intergenic |
| GGCTATTCTGGCAACACTTT+GGG | 0.244937 | 3_2:+67813921 | Msa0419670:CDS |
| GTCATTTAAGGCTATGTTAA+TGG | 0.251285 | 3_2:-67814619 | None:intergenic |
| GCTCATGAATGATTTGCTTT+TGG | 0.251739 | 3_2:-67814175 | None:intergenic |
| ATGCTACAAGGAGAGAAAAT+TGG | 0.262993 | 3_2:+67814040 | Msa0419670:CDS |
| CTTTGTTTGGTTATGTAATA+AGG | 0.263679 | 3_2:+67815988 | Msa0419670:three_prime_UTR |
| GGCTAGAACTTGCAGGAGTA+TGG | 0.273354 | 3_2:+67815376 | Msa0419670:CDS |
| TACCAGGCCAAGGTCATTTA+AGG | 0.278195 | 3_2:-67814631 | None:intergenic |
| TGGTGGTCCAGTGGCTATTC+TGG | 0.280884 | 3_2:+67813909 | Msa0419670:CDS |
| CCGTGATGGACGTGTTTATA+TGG | 0.287982 | 3_2:+67815539 | Msa0419670:CDS |
| GGCTGATAAGGATGTGTTTA+AGG | 0.289164 | 3_2:+67815767 | Msa0419670:CDS |
| AGTTTCACCAAAAGTTGTTT+TGG | 0.309827 | 3_2:-67813084 | None:intergenic |
| TGGTTTCTTGTGAGCCTTCA+AGG | 0.321792 | 3_2:-67812979 | None:intergenic |
| TGGTATTCCAAAACAACTTT+TGG | 0.322409 | 3_2:+67813077 | Msa0419670:CDS |
| CATTTGCTTGGAAATCTTCT+GGG | 0.327490 | 3_2:-67815347 | None:intergenic |
| TTGTCTGAGCATACTACTTC+AGG | 0.335540 | 3_2:+67814582 | Msa0419670:CDS |
| TCTTTGGTCTGTGGAAAGTA+TGG | 0.349731 | 3_2:-67812823 | None:intergenic |
| TGTCATATCTCATCACAAAA+TGG | 0.352184 | 3_2:-67814077 | None:intergenic |
| CATCAGGTGCTTTCAAAGAT+TGG | 0.360920 | 3_2:+67813057 | Msa0419670:CDS |
| TTACTCAGAATCATGTTTAT+GGG | 0.367047 | 3_2:+67815638 | Msa0419670:CDS |
| ACATGCTGCTTGTAGGCTAA+TGG | 0.368160 | 3_2:+67814275 | Msa0419670:CDS |
| TAAGTTCCAAAGGGTCTATA+AGG | 0.375128 | 3_2:-67814348 | None:intergenic |
| ACTTGGAAGGGAAGAAAGAT+TGG | 0.376560 | 3_2:+67815442 | Msa0419670:CDS |
| TTGAGTCCTTATAGACCCTT+TGG | 0.379079 | 3_2:+67814342 | Msa0419670:CDS |
| AGAGGAGCTAGGAGGATTCT+TGG | 0.379820 | 3_2:-67814105 | None:intergenic |
| TAGAAGACTAGTTGAGCCTT+TGG | 0.383000 | 3_2:+67815485 | Msa0419670:CDS |
| TCACAAGACATGCTGCTTGT+AGG | 0.383836 | 3_2:+67814268 | Msa0419670:CDS |
| GTTGGATCATGCACTTTGTT+TGG | 0.384787 | 3_2:+67815975 | Msa0419670:three_prime_UTR |
| TCAAGCAGCTGCAGCATTAG+AGG | 0.386121 | 3_2:+67815185 | Msa0419670:CDS |
| GTCATTTGATGCGTCCTTGA+AGG | 0.386377 | 3_2:+67812965 | Msa0419670:CDS |
| ACATCTTCAAAAGGCTTGTC+AGG | 0.388987 | 3_2:-67815687 | None:intergenic |
| AAGAAAGATTGGATTGATAT+AGG | 0.390115 | 3_2:+67815453 | Msa0419670:CDS |
| TGAGAAAGATGAGGCTGATA+AGG | 0.395368 | 3_2:+67815755 | Msa0419670:CDS |
| CTAAAGGAGGAAGGCCAAAA+AGG | 0.396329 | 3_2:+67815562 | Msa0419670:CDS |
| CATGCTGCTTGTAGGCTAAT+GGG | 0.400385 | 3_2:+67814276 | Msa0419670:CDS |
| TCTAGAAGGTAGTGTCTCTC+TGG | 0.408942 | 3_2:-67812999 | None:intergenic |
| ATCATCAGCTTTCCAGCATC+AGG | 0.410129 | 3_2:+67813041 | Msa0419670:CDS |
| TGGCTATTCTGGCAACACTT+TGG | 0.417209 | 3_2:+67813920 | Msa0419670:CDS |
| TGCTACAAGGAGAGAAAATT+GGG | 0.419960 | 3_2:+67814041 | Msa0419670:CDS |
| GTGCAGAGGCTAGAACTTGC+AGG | 0.421924 | 3_2:+67815369 | Msa0419670:CDS |
| TCACATTTATTACACAATAT+AGG | 0.422806 | 3_2:-67816023 | None:intergenic |
| TGTTGTGTACTTAGACCAAC+TGG | 0.432263 | 3_2:+67814548 | Msa0419670:CDS |
| CTAATTACTATAGACATTCA+AGG | 0.443986 | 3_2:+67815514 | Msa0419670:CDS |
| CTATGAACTTCCAGAAGACT+TGG | 0.444628 | 3_2:+67815425 | Msa0419670:CDS |
| ATTATACTAATATAGTACTT+TGG | 0.447774 | 3_2:+67815927 | Msa0419670:three_prime_UTR |
| CTAGCCTCTGCACATTTGCT+TGG | 0.448165 | 3_2:-67815359 | None:intergenic |
| TAAGGAAAAGGTTGAGGCAT+TGG | 0.451260 | 3_2:+67815710 | Msa0419670:CDS |
| AAGAAGCAGATAGTGTTTGC+AGG | 0.453653 | 3_2:+67813877 | Msa0419670:CDS |
| ATGACCTGCAGAATTGCATC+AGG | 0.455008 | 3_2:-67814423 | None:intergenic |
| TTTCGTTCACTTAAAAGCAT+TGG | 0.464216 | 3_2:+67813125 | Msa0419670:CDS |
| GATTGTTCTTTATGGTCTGT+TGG | 0.470082 | 3_2:-67815837 | None:intergenic |
| TCTTTGAAAGCACCTGATGC+TGG | 0.472238 | 3_2:-67813053 | None:intergenic |
| CAATGAATATGTAGGTGGAT+AGG | 0.474650 | 3_2:+67813842 | Msa0419670:intron |
| GGAAAAGGTTGAGGCATTGG+AGG | 0.475367 | 3_2:+67815713 | Msa0419670:CDS |
| AATGAATATGTAGGTGGATA+GGG | 0.479173 | 3_2:+67813843 | Msa0419670:intron |
| CATTATGAGAAGAGGGATGA+AGG | 0.484238 | 3_2:+67815612 | Msa0419670:CDS |
| AATATGTGATTTCCAACTAA+AGG | 0.485127 | 3_2:-67814012 | None:intergenic |
| TGGATTCTACGTTTGTTAAG+TGG | 0.487040 | 3_2:+67815802 | Msa0419670:CDS |
| AACATAGCCTTAAATGACCT+TGG | 0.489141 | 3_2:+67814624 | Msa0419670:CDS |
| GTGTTTGCAGGACATTCGTC+TGG | 0.491091 | 3_2:+67813889 | Msa0419670:CDS |
| TGCACTACAAGTGGCGATGA+AGG | 0.491111 | 3_2:+67814378 | Msa0419670:CDS |
| AGGTTATTATGATGCATTCA+AGG | 0.496748 | 3_2:+67815314 | Msa0419670:CDS |
| GCAGAAAATGTAAGTTCCAA+AGG | 0.507553 | 3_2:-67814358 | None:intergenic |
| CACAGGTGCTGCTTATCCAC+TGG | 0.507899 | 3_2:+67815888 | Msa0419670:three_prime_UTR |
| GTTGGAACATTATGAGAAGA+GGG | 0.510509 | 3_2:+67815605 | Msa0419670:CDS |
| TTCATGAGCGAATCGAGTCT+TGG | 0.516950 | 3_2:+67814189 | Msa0419670:CDS |
| GAAGTAGTATGCTCAGACAA+AGG | 0.517071 | 3_2:-67814579 | None:intergenic |
| CCAGTTCAAAATGTTGTCGC+AGG | 0.517117 | 3_2:-67814503 | None:intergenic |
| AGATAGCCTCTGTGGAGGAT+AGG | 0.517852 | 3_2:+67815244 | Msa0419670:CDS |
| AATTGGCCAACTGGCCAACC+AGG | 0.519323 | 3_2:+67812708 | None:intergenic |
| AGTGTGAGCTATAGTGCAGT+TGG | 0.524340 | 3_2:+67815957 | Msa0419670:three_prime_UTR |
| AGATGTTAAGGAAAAGGTTG+AGG | 0.526342 | 3_2:+67815704 | Msa0419670:CDS |
| TGGTAACAATGAAGCTGCTA+AGG | 0.528491 | 3_2:+67813145 | Msa0419670:CDS |
| GCTAGAACTTGCAGGAGTAT+GGG | 0.533503 | 3_2:+67815377 | Msa0419670:CDS |
| AAACCCTGATGCAATTCTGC+AGG | 0.542505 | 3_2:+67814419 | Msa0419670:CDS |
| ATTCTACGTTTGTTAAGTGG+TGG | 0.545586 | 3_2:+67815805 | Msa0419670:CDS |
| GGACGTGTTTATATGGCTAA+AGG | 0.547868 | 3_2:+67815546 | Msa0419670:CDS |
| AGCCTTAAATGACCTTGGCC+TGG | 0.548198 | 3_2:+67814629 | Msa0419670:CDS |
| TAGGTATACACAAAGATGGT+TGG | 0.548252 | 3_2:+67815587 | Msa0419670:CDS |
| GGAGGATAGGATGAAAGCAC+TGG | 0.548822 | 3_2:+67815257 | Msa0419670:CDS |
| TCATCACAAAATGGAAGAAG+TGG | 0.551943 | 3_2:-67814068 | None:intergenic |
| CAGAAAATGTAAGTTCCAAA+GGG | 0.551969 | 3_2:-67814357 | None:intergenic |
| CGAAAGAAGATAGAGGAGCT+AGG | 0.552232 | 3_2:-67814116 | None:intergenic |
| ATCATGTTTATGGGCTGAAG+TGG | 0.554848 | 3_2:+67815647 | Msa0419670:CDS |
| AACTTCCAGAAGACTTGGAA+GGG | 0.555409 | 3_2:+67815430 | Msa0419670:CDS |
| GAACTTCCAGAAGACTTGGA+AGG | 0.560632 | 3_2:+67815429 | Msa0419670:CDS |
| GGTATAGGTATACACAAAGA+TGG | 0.561423 | 3_2:+67815583 | Msa0419670:CDS |
| AAGCTCTGAAGAAGAAGCTG+AGG | 0.562108 | 3_2:+67814464 | Msa0419670:CDS |
| GGTTGGAACATTATGAGAAG+AGG | 0.569597 | 3_2:+67815604 | Msa0419670:CDS |
| ATGTTTATGGGCTGAAGTGG+AGG | 0.574694 | 3_2:+67815650 | Msa0419670:CDS |
| CAAAAGTAATGCAGATGGGA+GGG | 0.576141 | 3_2:-67813984 | None:intergenic |
| AAGCTGATGATAACTTCTGA+AGG | 0.579352 | 3_2:-67813029 | None:intergenic |
| AAAAGCATATGTCTTCAACT+TGG | 0.579608 | 3_2:+67812782 | Msa0419670:five_prime_UTR |
| ACACACATGGCTTCATCAAG+AGG | 0.586314 | 3_2:+67812900 | Msa0419670:exon |
| AGAACCAAAAGTAATGCAGA+TGG | 0.587556 | 3_2:-67813989 | None:intergenic |
| AAGGGTCTATAAGGACTCAA+AGG | 0.589494 | 3_2:-67814339 | None:intergenic |
| TTATAACTGCATTAATCCAG+TGG | 0.589743 | 3_2:-67815904 | None:intergenic |
| AAAGTCATCACTTGAAGATG+AGG | 0.590426 | 3_2:+67813208 | Msa0419670:CDS |
| TTTGCAGGACATTCGTCTGG+TGG | 0.596333 | 3_2:+67813892 | Msa0419670:CDS |
| TGGAGGAATTTATAAGCAAG+TGG | 0.596722 | 3_2:+67815730 | Msa0419670:CDS |
| CAGCTGCAGCATTAGAGGAA+CGG | 0.605468 | 3_2:+67815190 | Msa0419670:CDS |
| AAAGGTTGCATACCAGGCCA+AGG | 0.614366 | 3_2:-67814641 | None:intergenic |
| AGTGTTGCCAGAATAGCCAC+TGG | 0.614618 | 3_2:-67813916 | None:intergenic |
| GGACAGTTACAGAGAAACGC+GGG | 0.617330 | 3_2:+67815278 | Msa0419670:CDS |
| CGTGTTTATATGGCTAAAGG+AGG | 0.625592 | 3_2:+67815549 | Msa0419670:CDS |
| TTTATATGGCTAAAGGAGGA+AGG | 0.625809 | 3_2:+67815553 | Msa0419670:CDS |
| CCAAAAGTAATGCAGATGGG+AGG | 0.626384 | 3_2:-67813985 | None:intergenic |
| CCATATAAACACGTCCATCA+CGG | 0.630887 | 3_2:-67815539 | None:intergenic |
| GTCTTGTTGAAGTGTGACAC+AGG | 0.632853 | 3_2:+67815871 | Msa0419670:exon |
| TATGAGAAGAGGGATGAAGG+TGG | 0.634440 | 3_2:+67815615 | Msa0419670:CDS |
| ACATTCGTCTGGTGGTCCAG+TGG | 0.641872 | 3_2:+67813900 | Msa0419670:CDS |
| AGACATTCAAGGAACCGTGA+TGG | 0.644212 | 3_2:+67815525 | Msa0419670:CDS |
| GAACCAAAAGTAATGCAGAT+GGG | 0.645149 | 3_2:-67813988 | None:intergenic |
| TCTGAGCATACTACTTCAGG+TGG | 0.659119 | 3_2:+67814585 | Msa0419670:CDS |
| GCAGATGGGAGGGATACGAT+CGG | 0.665165 | 3_2:-67813974 | None:intergenic |
| TAGTAATTAGCAATATCCAA+AGG | 0.665329 | 3_2:-67815501 | None:intergenic |
| GCTACAAAAGATAGCCTCTG+TGG | 0.671502 | 3_2:+67815236 | Msa0419670:CDS |
| TGACCTGCAGAATTGCATCA+GGG | 0.674595 | 3_2:-67814422 | None:intergenic |
| CACATGGCTTCATCAAGAGG+TGG | 0.677661 | 3_2:+67812903 | Msa0419670:exon |
| ATTTCCAAGCAAATGTGCAG+AGG | 0.681390 | 3_2:+67815355 | Msa0419670:CDS |
| ACAAAAGATAGCCTCTGTGG+AGG | 0.699183 | 3_2:+67815239 | Msa0419670:CDS |
| AAGAAGATAGAGGAGCTAGG+AGG | 0.700489 | 3_2:-67814113 | None:intergenic |
| TGGACAGTTACAGAGAAACG+CGG | 0.726781 | 3_2:+67815277 | Msa0419670:CDS |
| CAAGTGGTATGAGAAAGATG+AGG | 0.736957 | 3_2:+67815746 | Msa0419670:CDS |
| GACAGTTACAGAGAAACGCG+GGG | 0.746046 | 3_2:+67815279 | Msa0419670:CDS |
| TTTCATCCTATCCTCCACAG+AGG | 0.805971 | 3_2:-67815250 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTCTATATTATATAAATTT+AGG | + | chr3_2:67816055-67816074 | Msa0419670:three_prime_UTR | 10.0% |
| !!! | CTTTTTTTATCATATTGTTT+AGG | - | chr3_2:67812767-67812786 | None:intergenic | 15.0% |
| !!! | ACAAAATTAATTTTCAACTT+AGG | - | chr3_2:67813456-67813475 | None:intergenic | 15.0% |
| !! | AAAAACATATTTAATAACTC+AGG | + | chr3_2:67813690-67813709 | Msa0419670:intron | 15.0% |
| !! | ATATATTTCAATGAATATGT+AGG | + | chr3_2:67813834-67813853 | Msa0419670:intron | 15.0% |
| !! | ATATGAGTATATAAAGTAAA+AGG | - | chr3_2:67814742-67814761 | None:intergenic | 15.0% |
| !! | ATTATACTAATATAGTACTT+TGG | + | chr3_2:67815927-67815946 | Msa0419670:three_prime_UTR | 15.0% |
| !! | TTAAGTATAGATGCTATAAA+AGG | - | chr3_2:67813312-67813331 | None:intergenic | 20.0% |
| !!! | AAACTAATATTGAGTTGTTT+TGG | - | chr3_2:67813363-67813382 | None:intergenic | 20.0% |
| !!! | AATGTCATGTATAATTTGTT+GGG | + | chr3_2:67813613-67813632 | Msa0419670:intron | 20.0% |
| !!! | CTTTAAAATCGACAAAAATA+GGG | - | chr3_2:67814673-67814692 | None:intergenic | 20.0% |
| !!! | ACTTTAAAATCGACAAAAAT+AGG | - | chr3_2:67814674-67814693 | None:intergenic | 20.0% |
| !! | GTAGTAATTTATTAGACATA+AGG | - | chr3_2:67814882-67814901 | None:intergenic | 20.0% |
| !! | CATAATCAGATATAATTGAA+TGG | + | chr3_2:67814901-67814920 | Msa0419670:intron | 20.0% |
| !! | TCACATTTATTACACAATAT+AGG | - | chr3_2:67816026-67816045 | None:intergenic | 20.0% |
| !!! | TTAACTCCTTGTTTTTTCTT+TGG | - | chr3_2:67812842-67812861 | None:intergenic | 25.0% |
| ! | CCAAAATATCTTTGAATCTT+TGG | - | chr3_2:67813187-67813206 | None:intergenic | 25.0% |
| !! | CCAAAGATTCAAAGATATTT+TGG | + | chr3_2:67813184-67813203 | Msa0419670:CDS | 25.0% |
| !!! | CATTTTTAGCATTAAGGATA+GGG | - | chr3_2:67813338-67813357 | None:intergenic | 25.0% |
| !!! | TCATTTTTAGCATTAAGGAT+AGG | - | chr3_2:67813339-67813358 | None:intergenic | 25.0% |
| !!! | TTGGTTCATTTTTAGCATTA+AGG | - | chr3_2:67813344-67813363 | None:intergenic | 25.0% |
| ! | TTAACATTAGAGACTCAATT+AGG | + | chr3_2:67813382-67813401 | Msa0419670:intron | 25.0% |
| !! | CAATGTCATGTATAATTTGT+TGG | + | chr3_2:67813612-67813631 | Msa0419670:intron | 25.0% |
| !!! | ATCACATGGATTTGTTAAAA+AGG | + | chr3_2:67813778-67813797 | Msa0419670:intron | 25.0% |
| ! | TATTTCAATGAATATGTAGG+TGG | + | chr3_2:67813837-67813856 | Msa0419670:intron | 25.0% |
| ! | AATATGTGATTTCCAACTAA+AGG | - | chr3_2:67814015-67814034 | None:intergenic | 25.0% |
| ! | TTTGAACTGGTAAAAAACTT+TGG | + | chr3_2:67814516-67814535 | Msa0419670:CDS | 25.0% |
| ! | AATCAGATATGTCACTAATA+TGG | - | chr3_2:67814786-67814805 | None:intergenic | 25.0% |
| ! | TCTCATGTATTATGTATGAT+AGG | - | chr3_2:67814980-67814999 | None:intergenic | 25.0% |
| !!! | TGCTATTTTTTCATGTTCAA+TGG | - | chr3_2:67815092-67815111 | None:intergenic | 25.0% |
| ! | AAGAAAGATTGGATTGATAT+AGG | + | chr3_2:67815453-67815472 | Msa0419670:CDS | 25.0% |
| ! | TAGTAATTAGCAATATCCAA+AGG | - | chr3_2:67815504-67815523 | None:intergenic | 25.0% |
| ! | CTAATTACTATAGACATTCA+AGG | + | chr3_2:67815514-67815533 | Msa0419670:CDS | 25.0% |
| ! | TTACTCAGAATCATGTTTAT+GGG | + | chr3_2:67815638-67815657 | Msa0419670:CDS | 25.0% |
| !! | TTTTCCTTAACATCTTCAAA+AGG | - | chr3_2:67815699-67815718 | None:intergenic | 25.0% |
| !!! | TTTTGAAGATGTTAAGGAAA+AGG | + | chr3_2:67815698-67815717 | Msa0419670:CDS | 25.0% |
| ! | TAATGCATGATTGTTCTTTA+TGG | - | chr3_2:67815848-67815867 | None:intergenic | 25.0% |
| !! | CTTTGTTTGGTTATGTAATA+AGG | + | chr3_2:67815988-67816007 | Msa0419670:three_prime_UTR | 25.0% |
| ! | GAAGAGAAGAAAAATGAAAT+AGG | - | chr3_2:67816082-67816101 | None:intergenic | 25.0% |
| TTGACTTAAAAACTTGAACC+TGG | - | chr3_2:67812729-67812748 | None:intergenic | 30.0% | |
| ! | AAAAGCATATGTCTTCAACT+TGG | + | chr3_2:67812782-67812801 | Msa0419670:five_prime_UTR | 30.0% |
| ! | TGGTATTCCAAAACAACTTT+TGG | + | chr3_2:67813077-67813096 | Msa0419670:CDS | 30.0% |
| ! | AGTTTCACCAAAAGTTGTTT+TGG | - | chr3_2:67813087-67813106 | None:intergenic | 30.0% |
| ! | TTTCGTTCACTTAAAAGCAT+TGG | + | chr3_2:67813125-67813144 | Msa0419670:CDS | 30.0% |
| TTTGCATAACTAGATACACA+TGG | - | chr3_2:67813268-67813287 | None:intergenic | 30.0% | |
| ATTTGATTCATGTACCAAGT+TGG | - | chr3_2:67813420-67813439 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTAGTCCCTCTTTA+AGG | + | chr3_2:67813576-67813595 | Msa0419670:intron | 30.0% |
| ! | ATACTTTTGGTCCTTAAAGA+GGG | - | chr3_2:67813590-67813609 | None:intergenic | 30.0% |
| ! | ACATGACATTGACATACTTT+TGG | - | chr3_2:67813603-67813622 | None:intergenic | 30.0% |
| TGACACTATCAAATATCACA+TGG | + | chr3_2:67813764-67813783 | Msa0419670:intron | 30.0% | |
| AATGAATATGTAGGTGGATA+GGG | + | chr3_2:67813843-67813862 | Msa0419670:intron | 30.0% | |
| ! | ACATATTTTCTCATGCTACA+AGG | + | chr3_2:67814028-67814047 | Msa0419670:CDS | 30.0% |
| TGTCATATCTCATCACAAAA+TGG | - | chr3_2:67814080-67814099 | None:intergenic | 30.0% | |
| ! | GTGCAACTGTTTCAAATTTT+TGG | - | chr3_2:67814143-67814162 | None:intergenic | 30.0% |
| !!! | CTCATGAATGATTTGCTTTT+GGG | - | chr3_2:67814177-67814196 | None:intergenic | 30.0% |
| CAGAAAATGTAAGTTCCAAA+GGG | - | chr3_2:67814360-67814379 | None:intergenic | 30.0% | |
| ! | GTCATTTAAGGCTATGTTAA+TGG | - | chr3_2:67814622-67814641 | None:intergenic | 30.0% |
| ACAAAAATAGGGAAGGATAA+AGG | - | chr3_2:67814662-67814681 | None:intergenic | 30.0% | |
| AAAATCGACAAAAATAGGGA+AGG | - | chr3_2:67814669-67814688 | None:intergenic | 30.0% | |
| AGGTTATTATGATGCATTCA+AGG | + | chr3_2:67815314-67815333 | Msa0419670:CDS | 30.0% | |
| ! | TGTGTATACCTATACCTTTT+TGG | - | chr3_2:67815579-67815598 | None:intergenic | 30.0% |
| GTTACTCAGAATCATGTTTA+TGG | + | chr3_2:67815637-67815656 | Msa0419670:CDS | 30.0% | |
| !!! | GTTTAAGGATGTGTTTTTAG+TGG | + | chr3_2:67815782-67815801 | Msa0419670:CDS | 30.0% |
| TTATAACTGCATTAATCCAG+TGG | - | chr3_2:67815907-67815926 | None:intergenic | 30.0% | |
| CTTAAAAACTTGAACCTGGT+TGG | - | chr3_2:67812725-67812744 | None:intergenic | 35.0% | |
| !!! | CTTGTTTTTTCTTTGGTCTG+TGG | - | chr3_2:67812835-67812854 | None:intergenic | 35.0% |
| CACAGACCAAAGAAAAAACA+AGG | + | chr3_2:67812833-67812852 | Msa0419670:five_prime_UTR | 35.0% | |
| ! | CTGAAGGATTCTTTTCTAGA+AGG | - | chr3_2:67813016-67813035 | None:intergenic | 35.0% |
| AAGCTGATGATAACTTCTGA+AGG | - | chr3_2:67813032-67813051 | None:intergenic | 35.0% | |
| AAAGTCATCACTTGAAGATG+AGG | + | chr3_2:67813208-67813227 | Msa0419670:CDS | 35.0% | |
| AGATACACATGGTAAGATAG+AGG | - | chr3_2:67813257-67813276 | None:intergenic | 35.0% | |
| GGCAATTTATTTGTCCAACT+TGG | + | chr3_2:67813403-67813422 | Msa0419670:intron | 35.0% | |
| ACTTGCAGGAACTAAAAAGT+AGG | - | chr3_2:67813545-67813564 | None:intergenic | 35.0% | |
| ! | CATACTTTTGGTCCTTAAAG+AGG | - | chr3_2:67813591-67813610 | None:intergenic | 35.0% |
| !! | AATTTGTTGGGAGTGAAAAG+TGG | + | chr3_2:67813625-67813644 | Msa0419670:intron | 35.0% |
| ! | ATTTGTTGGGAGTGAAAAGT+GGG | + | chr3_2:67813626-67813645 | Msa0419670:intron | 35.0% |
| CAATGAATATGTAGGTGGAT+AGG | + | chr3_2:67813842-67813861 | Msa0419670:intron | 35.0% | |
| ! | TGGAGTTGGAAAGTTTTCTA+AGG | - | chr3_2:67813947-67813966 | None:intergenic | 35.0% |
| GAACCAAAAGTAATGCAGAT+GGG | - | chr3_2:67813991-67814010 | None:intergenic | 35.0% | |
| AGAACCAAAAGTAATGCAGA+TGG | - | chr3_2:67813992-67814011 | None:intergenic | 35.0% | |
| !!! | ACTTTTGGTTCTCCTTTAGT+TGG | + | chr3_2:67814000-67814019 | Msa0419670:CDS | 35.0% |
| ATGCTACAAGGAGAGAAAAT+TGG | + | chr3_2:67814040-67814059 | Msa0419670:CDS | 35.0% | |
| TGCTACAAGGAGAGAAAATT+GGG | + | chr3_2:67814041-67814060 | Msa0419670:CDS | 35.0% | |
| TCATCACAAAATGGAAGAAG+TGG | - | chr3_2:67814071-67814090 | None:intergenic | 35.0% | |
| ! | TTTTGGTCGAAAGAAGATAG+AGG | - | chr3_2:67814126-67814145 | None:intergenic | 35.0% |
| !!! | GCTCATGAATGATTTGCTTT+TGG | - | chr3_2:67814178-67814197 | None:intergenic | 35.0% |
| TAAGTTCCAAAGGGTCTATA+AGG | - | chr3_2:67814351-67814370 | None:intergenic | 35.0% | |
| GCAGAAAATGTAAGTTCCAA+AGG | - | chr3_2:67814361-67814380 | None:intergenic | 35.0% | |
| ! | TACATTTTCTGCACTACAAG+TGG | + | chr3_2:67814369-67814388 | Msa0419670:CDS | 35.0% |
| ! | ACAAAGGAAGATTTTCCAGT+TGG | - | chr3_2:67814566-67814585 | None:intergenic | 35.0% |
| ! | AACATAGCCTTAAATGACCT+TGG | + | chr3_2:67814624-67814643 | Msa0419670:CDS | 35.0% |
| GTGTAATGCATATAACAGCA+TGG | - | chr3_2:67815032-67815051 | None:intergenic | 35.0% | |
| GTTATATGCATTACACACCT+TGG | + | chr3_2:67815036-67815055 | Msa0419670:intron | 35.0% | |
| ACATAGTTTCATTTCCACCA+AGG | - | chr3_2:67815056-67815075 | None:intergenic | 35.0% | |
| CATTTGCTTGGAAATCTTCT+GGG | - | chr3_2:67815350-67815369 | None:intergenic | 35.0% | |
| ACATTTGCTTGGAAATCTTC+TGG | - | chr3_2:67815351-67815370 | None:intergenic | 35.0% | |
| TTTATATGGCTAAAGGAGGA+AGG | + | chr3_2:67815553-67815572 | Msa0419670:CDS | 35.0% | |
| GGTATAGGTATACACAAAGA+TGG | + | chr3_2:67815583-67815602 | Msa0419670:CDS | 35.0% | |
| TAGGTATACACAAAGATGGT+TGG | + | chr3_2:67815587-67815606 | Msa0419670:CDS | 35.0% | |
| GTTGGAACATTATGAGAAGA+GGG | + | chr3_2:67815605-67815624 | Msa0419670:CDS | 35.0% | |
| !! | CAAGCCTTTTGAAGATGTTA+AGG | + | chr3_2:67815692-67815711 | Msa0419670:CDS | 35.0% |
| AGATGTTAAGGAAAAGGTTG+AGG | + | chr3_2:67815704-67815723 | Msa0419670:CDS | 35.0% | |
| TGGAGGAATTTATAAGCAAG+TGG | + | chr3_2:67815730-67815749 | Msa0419670:CDS | 35.0% | |
| ! | TGGATTCTACGTTTGTTAAG+TGG | + | chr3_2:67815802-67815821 | Msa0419670:CDS | 35.0% |
| ! | ATTCTACGTTTGTTAAGTGG+TGG | + | chr3_2:67815805-67815824 | Msa0419670:CDS | 35.0% |
| GATTGTTCTTTATGGTCTGT+TGG | - | chr3_2:67815840-67815859 | None:intergenic | 35.0% | |
| TCTTTGGTCTGTGGAAAGTA+TGG | - | chr3_2:67812826-67812845 | None:intergenic | 40.0% | |
| CATCAGGTGCTTTCAAAGAT+TGG | + | chr3_2:67813057-67813076 | Msa0419670:CDS | 40.0% | |
| TGGTAACAATGAAGCTGCTA+AGG | + | chr3_2:67813145-67813164 | Msa0419670:CDS | 40.0% | |
| ! | CATGCAACTTTGTAACTTGC+AGG | - | chr3_2:67813559-67813578 | None:intergenic | 40.0% |
| AAGAAGCAGATAGTGTTTGC+AGG | + | chr3_2:67813877-67813896 | Msa0419670:CDS | 40.0% | |
| CAAAAGTAATGCAGATGGGA+GGG | - | chr3_2:67813987-67814006 | None:intergenic | 40.0% | |
| AAGGGTCTATAAGGACTCAA+AGG | - | chr3_2:67814342-67814361 | None:intergenic | 40.0% | |
| TTGAGTCCTTATAGACCCTT+TGG | + | chr3_2:67814342-67814361 | Msa0419670:CDS | 40.0% | |
| ! | ATGTTGTCGCAGGCTTTTAA+GGG | - | chr3_2:67814496-67814515 | None:intergenic | 40.0% |
| ! | AATGTTGTCGCAGGCTTTTA+AGG | - | chr3_2:67814497-67814516 | None:intergenic | 40.0% |
| TGTTGTGTACTTAGACCAAC+TGG | + | chr3_2:67814548-67814567 | Msa0419670:CDS | 40.0% | |
| GAAGTAGTATGCTCAGACAA+AGG | - | chr3_2:67814582-67814601 | None:intergenic | 40.0% | |
| TTGTCTGAGCATACTACTTC+AGG | + | chr3_2:67814582-67814601 | Msa0419670:CDS | 40.0% | |
| AAGGATAAAGGTTGCATACC+AGG | - | chr3_2:67814650-67814669 | None:intergenic | 40.0% | |
| ATATGCATTACACACCTTGG+TGG | + | chr3_2:67815039-67815058 | Msa0419670:intron | 40.0% | |
| ATTTCCAAGCAAATGTGCAG+AGG | + | chr3_2:67815355-67815374 | Msa0419670:CDS | 40.0% | |
| CTATGAACTTCCAGAAGACT+TGG | + | chr3_2:67815425-67815444 | Msa0419670:CDS | 40.0% | |
| AACTTCCAGAAGACTTGGAA+GGG | + | chr3_2:67815430-67815449 | Msa0419670:CDS | 40.0% | |
| ACTTGGAAGGGAAGAAAGAT+TGG | + | chr3_2:67815442-67815461 | Msa0419670:CDS | 40.0% | |
| ! | TAGAAGACTAGTTGAGCCTT+TGG | + | chr3_2:67815485-67815504 | Msa0419670:CDS | 40.0% |
| CCATATAAACACGTCCATCA+CGG | - | chr3_2:67815542-67815561 | None:intergenic | 40.0% | |
| GGACGTGTTTATATGGCTAA+AGG | + | chr3_2:67815546-67815565 | Msa0419670:CDS | 40.0% | |
| CGTGTTTATATGGCTAAAGG+AGG | + | chr3_2:67815549-67815568 | Msa0419670:CDS | 40.0% | |
| GGTTGGAACATTATGAGAAG+AGG | + | chr3_2:67815604-67815623 | Msa0419670:CDS | 40.0% | |
| CATTATGAGAAGAGGGATGA+AGG | + | chr3_2:67815612-67815631 | Msa0419670:CDS | 40.0% | |
| ! | ATCATGTTTATGGGCTGAAG+TGG | + | chr3_2:67815647-67815666 | Msa0419670:CDS | 40.0% |
| ACATCTTCAAAAGGCTTGTC+AGG | - | chr3_2:67815690-67815709 | None:intergenic | 40.0% | |
| TAAGGAAAAGGTTGAGGCAT+TGG | + | chr3_2:67815710-67815729 | Msa0419670:CDS | 40.0% | |
| CAAGTGGTATGAGAAAGATG+AGG | + | chr3_2:67815746-67815765 | Msa0419670:CDS | 40.0% | |
| TGAGAAAGATGAGGCTGATA+AGG | + | chr3_2:67815755-67815774 | Msa0419670:CDS | 40.0% | |
| GGCTGATAAGGATGTGTTTA+AGG | + | chr3_2:67815767-67815786 | Msa0419670:CDS | 40.0% | |
| GTTGGATCATGCACTTTGTT+TGG | + | chr3_2:67815975-67815994 | Msa0419670:three_prime_UTR | 40.0% | |
| AACACACACACACACACACA+TGG | + | chr3_2:67812887-67812906 | Msa0419670:exon | 45.0% | |
| ACACACATGGCTTCATCAAG+AGG | + | chr3_2:67812900-67812919 | Msa0419670:exon | 45.0% | |
| GTCATTTGATGCGTCCTTGA+AGG | + | chr3_2:67812965-67812984 | Msa0419670:CDS | 45.0% | |
| TGGTTTCTTGTGAGCCTTCA+AGG | - | chr3_2:67812982-67813001 | None:intergenic | 45.0% | |
| TCTAGAAGGTAGTGTCTCTC+TGG | - | chr3_2:67813002-67813021 | None:intergenic | 45.0% | |
| ATCATCAGCTTTCCAGCATC+AGG | + | chr3_2:67813041-67813060 | Msa0419670:CDS | 45.0% | |
| !! | TCTTTGAAAGCACCTGATGC+TGG | - | chr3_2:67813056-67813075 | None:intergenic | 45.0% |
| TGGGAGTGAAAAGTGGGTAT+AGG | + | chr3_2:67813632-67813651 | Msa0419670:intron | 45.0% | |
| GGGAGTGAAAAGTGGGTATA+GGG | + | chr3_2:67813633-67813652 | Msa0419670:intron | 45.0% | |
| TGGCTATTCTGGCAACACTT+TGG | + | chr3_2:67813920-67813939 | Msa0419670:CDS | 45.0% | |
| GGCTATTCTGGCAACACTTT+GGG | + | chr3_2:67813921-67813940 | Msa0419670:CDS | 45.0% | |
| !!! | CGATCGGAAGATTTTGGAGT+TGG | - | chr3_2:67813961-67813980 | None:intergenic | 45.0% |
| ! | GGGATACGATCGGAAGATTT+TGG | - | chr3_2:67813967-67813986 | None:intergenic | 45.0% |
| CCAAAAGTAATGCAGATGGG+AGG | - | chr3_2:67813988-67814007 | None:intergenic | 45.0% | |
| ! | CCTCCCATCTGCATTACTTT+TGG | + | chr3_2:67813985-67814004 | Msa0419670:CDS | 45.0% |
| AAGAAGATAGAGGAGCTAGG+AGG | - | chr3_2:67814116-67814135 | None:intergenic | 45.0% | |
| CGAAAGAAGATAGAGGAGCT+AGG | - | chr3_2:67814119-67814138 | None:intergenic | 45.0% | |
| TTCATGAGCGAATCGAGTCT+TGG | + | chr3_2:67814189-67814208 | Msa0419670:CDS | 45.0% | |
| ! | TCACAAGACATGCTGCTTGT+AGG | + | chr3_2:67814268-67814287 | Msa0419670:CDS | 45.0% |
| ! | ACATGCTGCTTGTAGGCTAA+TGG | + | chr3_2:67814275-67814294 | Msa0419670:CDS | 45.0% |
| ! | CATGCTGCTTGTAGGCTAAT+GGG | + | chr3_2:67814276-67814295 | Msa0419670:CDS | 45.0% |
| AAACCCTGATGCAATTCTGC+AGG | + | chr3_2:67814419-67814438 | Msa0419670:CDS | 45.0% | |
| TGACCTGCAGAATTGCATCA+GGG | - | chr3_2:67814425-67814444 | None:intergenic | 45.0% | |
| ATGACCTGCAGAATTGCATC+AGG | - | chr3_2:67814426-67814445 | None:intergenic | 45.0% | |
| !! | AAGCTCTGAAGAAGAAGCTG+AGG | + | chr3_2:67814464-67814483 | Msa0419670:CDS | 45.0% |
| ! | TGTTGTCGCAGGCTTTTAAG+GGG | - | chr3_2:67814495-67814514 | None:intergenic | 45.0% |
| CCAGTTCAAAATGTTGTCGC+AGG | - | chr3_2:67814506-67814525 | None:intergenic | 45.0% | |
| ! | CCTGCGACAACATTTTGAAC+TGG | + | chr3_2:67814503-67814522 | Msa0419670:CDS | 45.0% |
| TCTGAGCATACTACTTCAGG+TGG | + | chr3_2:67814585-67814604 | Msa0419670:CDS | 45.0% | |
| TACCAGGCCAAGGTCATTTA+AGG | - | chr3_2:67814634-67814653 | None:intergenic | 45.0% | |
| GCTACAAAAGATAGCCTCTG+TGG | + | chr3_2:67815236-67815255 | Msa0419670:CDS | 45.0% | |
| ACAAAAGATAGCCTCTGTGG+AGG | + | chr3_2:67815239-67815258 | Msa0419670:CDS | 45.0% | |
| TTTCATCCTATCCTCCACAG+AGG | - | chr3_2:67815253-67815272 | None:intergenic | 45.0% | |
| TGGACAGTTACAGAGAAACG+CGG | + | chr3_2:67815277-67815296 | Msa0419670:CDS | 45.0% | |
| ! | GCTAGAACTTGCAGGAGTAT+GGG | + | chr3_2:67815377-67815396 | Msa0419670:CDS | 45.0% |
| GAACTTCCAGAAGACTTGGA+AGG | + | chr3_2:67815429-67815448 | Msa0419670:CDS | 45.0% | |
| TTCTTCCCTTCCAAGTCTTC+TGG | - | chr3_2:67815438-67815457 | None:intergenic | 45.0% | |
| AGACATTCAAGGAACCGTGA+TGG | + | chr3_2:67815525-67815544 | Msa0419670:CDS | 45.0% | |
| !! | CCGTGATGGACGTGTTTATA+TGG | + | chr3_2:67815539-67815558 | Msa0419670:CDS | 45.0% |
| CTAAAGGAGGAAGGCCAAAA+AGG | + | chr3_2:67815562-67815581 | Msa0419670:CDS | 45.0% | |
| ! | GAGGAAGGCCAAAAAGGTAT+AGG | + | chr3_2:67815568-67815587 | Msa0419670:CDS | 45.0% |
| TATGAGAAGAGGGATGAAGG+TGG | + | chr3_2:67815615-67815634 | Msa0419670:CDS | 45.0% | |
| ! | ATGTTTATGGGCTGAAGTGG+AGG | + | chr3_2:67815650-67815669 | Msa0419670:CDS | 45.0% |
| ! | GTCTTGTTGAAGTGTGACAC+AGG | + | chr3_2:67815871-67815890 | Msa0419670:exon | 45.0% |
| AGTGTGAGCTATAGTGCAGT+TGG | + | chr3_2:67815957-67815976 | Msa0419670:three_prime_UTR | 45.0% | |
| CACATGGCTTCATCAAGAGG+TGG | + | chr3_2:67812903-67812922 | Msa0419670:exon | 50.0% | |
| GTGTTTGCAGGACATTCGTC+TGG | + | chr3_2:67813889-67813908 | Msa0419670:CDS | 50.0% | |
| TTTGCAGGACATTCGTCTGG+TGG | + | chr3_2:67813892-67813911 | Msa0419670:CDS | 50.0% | |
| AGTGTTGCCAGAATAGCCAC+TGG | - | chr3_2:67813919-67813938 | None:intergenic | 50.0% | |
| AGAGGAGCTAGGAGGATTCT+TGG | - | chr3_2:67814108-67814127 | None:intergenic | 50.0% | |
| TGCACTACAAGTGGCGATGA+AGG | + | chr3_2:67814378-67814397 | Msa0419670:CDS | 50.0% | |
| AGCCTTAAATGACCTTGGCC+TGG | + | chr3_2:67814629-67814648 | Msa0419670:CDS | 50.0% | |
| AAAGGTTGCATACCAGGCCA+AGG | - | chr3_2:67814644-67814663 | None:intergenic | 50.0% | |
| TCAAGCAGCTGCAGCATTAG+AGG | + | chr3_2:67815185-67815204 | Msa0419670:CDS | 50.0% | |
| CAGCTGCAGCATTAGAGGAA+CGG | + | chr3_2:67815190-67815209 | Msa0419670:CDS | 50.0% | |
| AGATAGCCTCTGTGGAGGAT+AGG | + | chr3_2:67815244-67815263 | Msa0419670:CDS | 50.0% | |
| ! | GGAGGATAGGATGAAAGCAC+TGG | + | chr3_2:67815257-67815276 | Msa0419670:CDS | 50.0% |
| GGACAGTTACAGAGAAACGC+GGG | + | chr3_2:67815278-67815297 | Msa0419670:CDS | 50.0% | |
| GACAGTTACAGAGAAACGCG+GGG | + | chr3_2:67815279-67815298 | Msa0419670:CDS | 50.0% | |
| ACGCGGGGACATCAGAAAAA+AGG | + | chr3_2:67815294-67815313 | Msa0419670:CDS | 50.0% | |
| CTAGCCTCTGCACATTTGCT+TGG | - | chr3_2:67815362-67815381 | None:intergenic | 50.0% | |
| GGCTAGAACTTGCAGGAGTA+TGG | + | chr3_2:67815376-67815395 | Msa0419670:CDS | 50.0% | |
| !! | GGAAAAGGTTGAGGCATTGG+AGG | + | chr3_2:67815713-67815732 | Msa0419670:CDS | 50.0% |
| ACATTCGTCTGGTGGTCCAG+TGG | + | chr3_2:67813900-67813919 | Msa0419670:CDS | 55.0% | |
| TGGTGGTCCAGTGGCTATTC+TGG | + | chr3_2:67813909-67813928 | Msa0419670:CDS | 55.0% | |
| GCAGATGGGAGGGATACGAT+CGG | - | chr3_2:67813977-67813996 | None:intergenic | 55.0% | |
| GTGCAGAGGCTAGAACTTGC+AGG | + | chr3_2:67815369-67815388 | Msa0419670:CDS | 55.0% | |
| !! | CACAGGTGCTGCTTATCCAC+TGG | + | chr3_2:67815888-67815907 | Msa0419670:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 67812720 | 67816110 | 67812720 | ID=Msa0419670;Name=Msa0419670 |
| chr3_2 | mRNA | 67812720 | 67816110 | 67812720 | ID=Msa0419670-mRNA-1;Parent=Msa0419670;Name=Msa0419670-mRNA-1;_AED=0.03;_eAED=0.03;_QI=186|1|1|1|1|1|3|223|614 |
| chr3_2 | exon | 67812720 | 67813229 | 67812720 | ID=Msa0419670-mRNA-1:exon:15857;Parent=Msa0419670-mRNA-1 |
| chr3_2 | exon | 67813856 | 67814650 | 67813856 | ID=Msa0419670-mRNA-1:exon:15858;Parent=Msa0419670-mRNA-1 |
| chr3_2 | exon | 67815162 | 67816110 | 67815162 | ID=Msa0419670-mRNA-1:exon:15859;Parent=Msa0419670-mRNA-1 |
| chr3_2 | five_prime_UTR | 67812720 | 67812905 | 67812720 | ID=Msa0419670-mRNA-1:five_prime_utr;Parent=Msa0419670-mRNA-1 |
| chr3_2 | CDS | 67812906 | 67813229 | 67812906 | ID=Msa0419670-mRNA-1:cds;Parent=Msa0419670-mRNA-1 |
| chr3_2 | CDS | 67813856 | 67814650 | 67813856 | ID=Msa0419670-mRNA-1:cds;Parent=Msa0419670-mRNA-1 |
| chr3_2 | CDS | 67815162 | 67815887 | 67815162 | ID=Msa0419670-mRNA-1:cds;Parent=Msa0419670-mRNA-1 |
| chr3_2 | three_prime_UTR | 67815888 | 67816110 | 67815888 | ID=Msa0419670-mRNA-1:three_prime_utr;Parent=Msa0419670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
