Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711200 | RHN53256.1 | 96.411 | 418 | 11 | 3 | 1 | 415 | 64 | 480 | 0.0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711200 | A0A396HJ24 | 96.411 | 418 | 11 | 3 | 1 | 415 | 64 | 480 | 0.0 | 816 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084870 | Msa0711200 | 0.806352 | 8.575688e-50 | -8.615850e-47 |
| Msa0608060 | Msa0711200 | 0.800584 | 1.345846e-48 | -8.615850e-47 |
| Msa0711200 | Msa1026770 | 0.843456 | 1.385938e-58 | -8.615850e-47 |
| Msa0711200 | Msa1026800 | 0.844698 | 6.436339e-59 | -8.615850e-47 |
| Msa0711200 | Msa1111770 | 0.844962 | 5.461551e-59 | -8.615850e-47 |
| Msa0711200 | Msa1380270 | 0.965899 | 3.312912e-125 | -8.615850e-47 |
| Msa0176980 | Msa0711200 | 0.810721 | 1.001134e-50 | -8.615850e-47 |
| Msa0216740 | Msa0711200 | 0.819190 | 1.322877e-52 | -8.615850e-47 |
| Msa0295960 | Msa0711200 | 0.814272 | 1.676719e-51 | -8.615850e-47 |
| Msa0333950 | Msa0711200 | 0.814085 | 1.843384e-51 | -8.615850e-47 |
| Msa0334060 | Msa0711200 | 0.807648 | 4.561190e-50 | -8.615850e-47 |
| Msa0510120 | Msa0711200 | 0.818818 | 1.606967e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711200 | MtrunA17_Chr5g0393941 | 96.411 | 418 | 11 | 3 | 1 | 415 | 64 | 480 | 0.0 | 816 |
| Msa0711200 | MtrunA17_Chr3g0140721 | 48.085 | 470 | 167 | 10 | 1 | 415 | 1 | 448 | 5.99e-133 | 389 |
| Msa0711200 | MtrunA17_Chr6g0487371 | 42.857 | 441 | 197 | 13 | 1 | 413 | 1 | 414 | 1.02e-104 | 316 |
| Msa0711200 | MtrunA17_Chr8g0337321 | 34.000 | 450 | 224 | 12 | 1 | 414 | 1 | 413 | 1.10e-72 | 233 |
| Msa0711200 | MtrunA17_Chr8g0389691 | 49.761 | 209 | 64 | 5 | 214 | 413 | 2 | 178 | 2.18e-53 | 176 |
| Msa0711200 | MtrunA17_Chr8g0389701 | 41.176 | 136 | 73 | 4 | 66 | 197 | 27 | 159 | 1.70e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711200 | AT3G19680.1 | 49.796 | 490 | 165 | 14 | 1 | 415 | 1 | 484 | 2.00e-129 | 382 |
| Msa0711200 | AT1G50040.1 | 51.852 | 459 | 171 | 13 | 1 | 415 | 1 | 453 | 1.54e-124 | 369 |
| Msa0711200 | AT1G10020.1 | 45.223 | 471 | 184 | 11 | 1 | 413 | 1 | 455 | 3.77e-120 | 357 |
| Msa0711200 | AT4G29310.1 | 43.624 | 447 | 186 | 12 | 1 | 413 | 1 | 415 | 2.82e-113 | 338 |
| Msa0711200 | AT4G29310.2 | 44.340 | 318 | 138 | 9 | 1 | 286 | 1 | 311 | 1.56e-82 | 256 |
| Msa0711200 | AT5G17640.1 | 38.269 | 439 | 213 | 14 | 1 | 403 | 1 | 417 | 2.43e-80 | 254 |
Find 113 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTAGAGATTTGTGATTT+AGG | 0.171640 | 5_1:-3071854 | None:intergenic |
| CGTTAGAGATTTGTGATTTA+GGG | 0.208710 | 5_1:-3071853 | None:intergenic |
| CCAAACGGAAGCTGGGATTT+AGG | 0.285254 | 5_1:+3072592 | Msa0711200:CDS |
| TCCAACGGAGTTTGAGTAAC+CGG | 0.343106 | 5_1:-3072446 | None:intergenic |
| TCAAGACCCGGGTCTGGTTC+CGG | 0.366880 | 5_1:+3072628 | Msa0711200:CDS |
| CCCGGTTCAGTTTCCATCAA+TGG | 0.370037 | 5_1:+3072228 | Msa0711200:CDS |
| CTGCAACCGGCGAGTGTGAC+TGG | 0.377352 | 5_1:-3072502 | None:intergenic |
| ACCGGTTGCGTGTGCTTCAA+TGG | 0.380208 | 5_1:+3072294 | Msa0711200:CDS |
| TCCTTCCCCTGGTTCACAAC+GGG | 0.385398 | 5_1:+3072330 | Msa0711200:CDS |
| TTTCCGGTTTGACGGTGAAC+CGG | 0.390430 | 5_1:+3072114 | Msa0711200:CDS |
| TCCATTGATGGAAACTGAAC+CGG | 0.392616 | 5_1:-3072229 | None:intergenic |
| AACCCGATGGTGATGGTACT+TGG | 0.396043 | 5_1:+3072389 | Msa0711200:CDS |
| AAAACCTGTGGACTGCATTC+CGG | 0.398056 | 5_1:-3072133 | None:intergenic |
| ATACCGGTTCGACGTTCTTC+CGG | 0.400080 | 5_1:+3072468 | Msa0711200:CDS |
| TCAAACCGGAAAATAAATCT+TGG | 0.401676 | 5_1:-3072103 | None:intergenic |
| CTTCCGTTTGGAGTGTTAAC+GGG | 0.405734 | 5_1:-3072580 | None:intergenic |
| AGCTGCTATGGATTTGAGTA+TGG | 0.413553 | 5_1:+3072804 | Msa0711200:CDS |
| TGGGATTTAGGATCCGGTTC+AGG | 0.417320 | 5_1:+3072604 | Msa0711200:CDS |
| CCAACCGTTGTGAAAAGAAC+AGG | 0.425210 | 5_1:-3072002 | None:intergenic |
| GCTTGAAGGATGAACTTTGC+CGG | 0.425992 | 5_1:-3071708 | None:intergenic |
| TGTTGCTCTTGCAGCTGCTA+TGG | 0.432619 | 5_1:+3072792 | Msa0711200:CDS |
| AGCACACGCAACCGGTGAAC+CGG | 0.433904 | 5_1:-3072287 | None:intergenic |
| CTGAATTTGCATGTGAAAAC+CGG | 0.437926 | 5_1:-3072181 | None:intergenic |
| ACACCCTTCGTTCCTTCCCC+TGG | 0.440544 | 5_1:+3072319 | Msa0711200:CDS |
| ACCATTGAAGCACACGCAAC+CGG | 0.440718 | 5_1:-3072295 | None:intergenic |
| GGAAACTGAACCGGGTTTGA+AGG | 0.444228 | 5_1:-3072220 | None:intergenic |
| TTTACAATTGATGTAGCATC+AGG | 0.444386 | 5_1:+3072550 | Msa0711200:CDS |
| TTTAACAGTCCGAGTTGAAC+CGG | 0.444551 | 5_1:+3072078 | Msa0711200:CDS |
| CCTAAATCCCAGCTTCCGTT+TGG | 0.449770 | 5_1:-3072592 | None:intergenic |
| GCTTCCGTTTGGAGTGTTAA+CGG | 0.458009 | 5_1:-3072581 | None:intergenic |
| GTGATGTCCGCGAGATTTGA+CGG | 0.461060 | 5_1:+3072694 | Msa0711200:CDS |
| GGAAGCTGGGATTTAGGATC+CGG | 0.461778 | 5_1:+3072598 | Msa0711200:CDS |
| TTAACACTCCAAACGGAAGC+TGG | 0.465898 | 5_1:+3072584 | Msa0711200:CDS |
| TTCACACCAACTTCCACCTC+CGG | 0.469096 | 5_1:-3072736 | None:intergenic |
| CTGTGAACTGATACTGCAAC+CGG | 0.471720 | 5_1:-3072515 | None:intergenic |
| CCCGGGTCTTGATCCTGAAC+CGG | 0.472126 | 5_1:-3072617 | None:intergenic |
| ATCTGGACCGGAACCAGACC+CGG | 0.472927 | 5_1:-3072635 | None:intergenic |
| CAGTAGCATGTGGAGCTTGA+AGG | 0.474576 | 5_1:-3071722 | None:intergenic |
| TCATTCGTACGGATCTTAAT+CGG | 0.483307 | 5_1:+3071641 | Msa0711200:CDS |
| TTTCCATCAATGGATAGAAA+AGG | 0.487017 | 5_1:+3072238 | Msa0711200:CDS |
| TTACTGACCCGTTGTGAACC+AGG | 0.488538 | 5_1:-3072337 | None:intergenic |
| ATTACGATACACGATTTATC+CGG | 0.490765 | 5_1:+3072268 | Msa0711200:CDS |
| ATTCCGGTTCACCGTCAAAC+CGG | 0.493752 | 5_1:-3072117 | None:intergenic |
| CATGGGGTCGACTCGAAGCT+TGG | 0.495685 | 5_1:+3072416 | Msa0711200:CDS |
| CTCGAAGCTTGGCGTGAACC+CGG | 0.500118 | 5_1:+3072427 | Msa0711200:CDS |
| GTGACTGGATCAGCGGTGGC+CGG | 0.500258 | 5_1:-3072487 | None:intergenic |
| TTCCAAGTACCATCACCATC+GGG | 0.502674 | 5_1:-3072391 | None:intergenic |
| AGGATGAACTTTGCCGGAGA+AGG | 0.503747 | 5_1:-3071702 | None:intergenic |
| ACTCAAACTCCGTTGGATAC+CGG | 0.505974 | 5_1:+3072452 | Msa0711200:CDS |
| AAAGTGTAGTAAACCGGAGG+TGG | 0.509798 | 5_1:+3072723 | Msa0711200:CDS |
| TTCCTTCCCCTGGTTCACAA+CGG | 0.514660 | 5_1:+3072329 | Msa0711200:CDS |
| TTGATAATTAACCAAGCACC+TGG | 0.518437 | 5_1:-3072367 | None:intergenic |
| TCAGGATCAAGACCCGGGTC+TGG | 0.518778 | 5_1:+3072622 | Msa0711200:CDS |
| CAAACCGGAAAATAAATCTT+GGG | 0.524651 | 5_1:-3072102 | None:intergenic |
| CGGAAAATAAATCTTGGGTC+CGG | 0.524889 | 5_1:-3072097 | None:intergenic |
| CAAGGGAGAAGTAAAACAAC+CGG | 0.526470 | 5_1:+3072162 | Msa0711200:CDS |
| ACACGATTTATCCGGTTCAC+CGG | 0.530542 | 5_1:+3072276 | Msa0711200:CDS |
| TGGCCGGAAGAACGTCGAAC+CGG | 0.534116 | 5_1:-3072471 | None:intergenic |
| CCATTGATGGAAACTGAACC+GGG | 0.538501 | 5_1:-3072228 | None:intergenic |
| TCATCAAAACCATCCTTCTC+CGG | 0.538620 | 5_1:+3071689 | Msa0711200:CDS |
| GGAACTGTTGCGACGTGGCA+AGG | 0.541832 | 5_1:-3071776 | None:intergenic |
| CCCGGTTACTCAAACTCCGT+TGG | 0.543060 | 5_1:+3072445 | Msa0711200:CDS |
| TGCAGTATCAGTTCACAGAA+TGG | 0.545387 | 5_1:+3072520 | Msa0711200:CDS |
| GAAACTGAACCGGGTTTGAA+GGG | 0.547385 | 5_1:-3072219 | None:intergenic |
| GTAAATCAAACCCAGGTGCT+TGG | 0.549731 | 5_1:+3072356 | Msa0711200:CDS |
| GCAGTGTTGAAAACGCATGA+AGG | 0.556005 | 5_1:-3071923 | None:intergenic |
| AAGGTAGCAGCGAGAGAGTG+AGG | 0.557770 | 5_1:-3071824 | None:intergenic |
| AGTAAACCGGAGGTGGAAGT+TGG | 0.559317 | 5_1:+3072730 | Msa0711200:CDS |
| ACTCCCGTTAACACTCCAAA+CGG | 0.562154 | 5_1:+3072577 | Msa0711200:CDS |
| TGAACTTTGCCGGAGAAGGA+TGG | 0.563927 | 5_1:-3071698 | None:intergenic |
| CCCTTGACTTGGAAAACCTG+TGG | 0.564292 | 5_1:-3072145 | None:intergenic |
| TGGATCCGTGCTCATTCGTA+CGG | 0.564550 | 5_1:+3071630 | Msa0711200:CDS |
| CCAACGGAGTTTGAGTAACC+GGG | 0.565981 | 5_1:-3072445 | None:intergenic |
| TTTCCAAGTACCATCACCAT+CGG | 0.566391 | 5_1:-3072392 | None:intergenic |
| TACTGACCCGTTGTGAACCA+GGG | 0.567667 | 5_1:-3072336 | None:intergenic |
| TCAACTAACGTTAGATCAAG+AGG | 0.569554 | 5_1:-3071971 | None:intergenic |
| TCCGGTTCAGGATCAAGACC+CGG | 0.572090 | 5_1:+3072616 | Msa0711200:CDS |
| TAACACTCCAAACGGAAGCT+GGG | 0.572899 | 5_1:+3072585 | Msa0711200:CDS |
| TCTGGACCGGAACCAGACCC+GGG | 0.576297 | 5_1:-3072634 | None:intergenic |
| TGATGGTACTTGGAAACCAT+GGG | 0.577535 | 5_1:+3072399 | Msa0711200:CDS |
| CATCAATGGATAGAAAAGGT+TGG | 0.582790 | 5_1:+3072242 | Msa0711200:CDS |
| CCGGTTCAGGATCAAGACCC+GGG | 0.584337 | 5_1:+3072617 | Msa0711200:CDS |
| TTTGATTTCGCAGTAGCATG+TGG | 0.586946 | 5_1:-3071732 | None:intergenic |
| ATCTTGGGTCCGGTTCAACT+CGG | 0.588586 | 5_1:-3072087 | None:intergenic |
| GTGATGGTACTTGGAAACCA+TGG | 0.592053 | 5_1:+3072398 | Msa0711200:CDS |
| ACCCGTTGTGAACCAGGGGA+AGG | 0.596861 | 5_1:-3072331 | None:intergenic |
| ATTATCAAACCCGATGGTGA+TGG | 0.600303 | 5_1:+3072382 | Msa0711200:CDS |
| TTGTGATTTAGGGAAATCAA+AGG | 0.603406 | 5_1:-3071843 | None:intergenic |
| TGGTTAATTATCAAACCCGA+TGG | 0.611258 | 5_1:+3072376 | Msa0711200:CDS |
| TGAACCGGAATGCAGTCCAC+AGG | 0.623479 | 5_1:+3072129 | Msa0711200:CDS |
| TACTGCGAAATCAAACTCAA+AGG | 0.623956 | 5_1:+3071740 | Msa0711200:CDS |
| AGAAATTACGAAAAGAGTTG+CGG | 0.624516 | 5_1:+3072848 | Msa0711200:CDS |
| TGAACCAGGGGAAGGAACGA+AGG | 0.624619 | 5_1:-3072323 | None:intergenic |
| CAAGCTTCGAGTCGACCCCA+TGG | 0.631720 | 5_1:-3072415 | None:intergenic |
| AGGTAGCAGCGAGAGAGTGA+GGG | 0.638529 | 5_1:-3071823 | None:intergenic |
| GGCGAGTGTGACTGGATCAG+CGG | 0.640369 | 5_1:-3072494 | None:intergenic |
| GTTTCTGATTCTGATACTAG+AGG | 0.642324 | 5_1:-3071797 | None:intergenic |
| GAGTGTGACTGGATCAGCGG+TGG | 0.643291 | 5_1:-3072491 | None:intergenic |
| CTCACTCTCAACAACAACAA+CGG | 0.645230 | 5_1:+3072031 | Msa0711200:CDS |
| AACGTCGAACCGGTATCCAA+CGG | 0.651013 | 5_1:-3072461 | None:intergenic |
| TTCAACACTGCAAAACTCGT+AGG | 0.651845 | 5_1:+3071935 | Msa0711200:CDS |
| AAGATCCGTACGAATGAGCA+CGG | 0.652835 | 5_1:-3071635 | None:intergenic |
| CAACCGTTGTGAAAAGAACA+GGG | 0.658170 | 5_1:-3072001 | None:intergenic |
| GAACCAGGGGAAGGAACGAA+GGG | 0.658472 | 5_1:-3072322 | None:intergenic |
| GCTGATCCAGTCACACTCGC+CGG | 0.659941 | 5_1:+3072496 | Msa0711200:CDS |
| TGATAATTAACCAAGCACCT+GGG | 0.663225 | 5_1:-3072366 | None:intergenic |
| ACTGACCCGTTGTGAACCAG+GGG | 0.673424 | 5_1:-3072335 | None:intergenic |
| AGTATCAGTTCACAGAATGG+TGG | 0.683678 | 5_1:+3072523 | Msa0711200:CDS |
| CTAGAGGAACTGTTGCGACG+TGG | 0.686510 | 5_1:-3071781 | None:intergenic |
| CGGGTCAGTAAATCAAACCC+AGG | 0.691115 | 5_1:+3072349 | Msa0711200:CDS |
| ACTGTTGCGACGTGGCAAGG+TGG | 0.702049 | 5_1:-3071773 | None:intergenic |
| TGTGAAGCACGTGACATGCA+CGG | 0.711455 | 5_1:+3072753 | Msa0711200:CDS |
| GATGGTACTTGGAAACCATG+GGG | 0.759321 | 5_1:+3072400 | Msa0711200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTGTTAGTTTTGAAAA+CGG | - | chr5_1:3071903-3071922 | None:intergenic | 20.0% |
| !!! | ATTTGTGTTAGTTTTGAAAA+CGG | - | chr5_1:3071903-3071922 | None:intergenic | 20.0% |
| !! | TGAAAAAAAGTGTAGTAAAC+CGG | + | chr5_1:3072717-3072736 | Msa0711200:CDS | 25.0% |
| !! | TGAAAAAAAGTGTAGTAAAC+CGG | + | chr5_1:3072717-3072736 | Msa0711200:CDS | 25.0% |
| !! | ATGATGGTGATTTTATTGCA+AGG | - | chr5_1:3071670-3071689 | None:intergenic | 30.0% |
| TTGTGATTTAGGGAAATCAA+AGG | - | chr5_1:3071846-3071865 | None:intergenic | 30.0% | |
| CGTTAGAGATTTGTGATTTA+GGG | - | chr5_1:3071856-3071875 | None:intergenic | 30.0% | |
| ACGTTAGAGATTTGTGATTT+AGG | - | chr5_1:3071857-3071876 | None:intergenic | 30.0% | |
| AACAACAACGGAAAAAATAC+TGG | + | chr5_1:3072043-3072062 | Msa0711200:CDS | 30.0% | |
| CAAACCGGAAAATAAATCTT+GGG | - | chr5_1:3072105-3072124 | None:intergenic | 30.0% | |
| TCAAACCGGAAAATAAATCT+TGG | - | chr5_1:3072106-3072125 | None:intergenic | 30.0% | |
| !! | AGATTTATTTTCCGGTTTGA+CGG | + | chr5_1:3072106-3072125 | Msa0711200:CDS | 30.0% |
| TTTCCATCAATGGATAGAAA+AGG | + | chr5_1:3072238-3072257 | Msa0711200:CDS | 30.0% | |
| ATTACGATACACGATTTATC+CGG | + | chr5_1:3072268-3072287 | Msa0711200:CDS | 30.0% | |
| TTTACAATTGATGTAGCATC+AGG | + | chr5_1:3072550-3072569 | Msa0711200:CDS | 30.0% | |
| TGATTCTCCAATGAAAAATC+TGG | - | chr5_1:3072655-3072674 | None:intergenic | 30.0% | |
| ! | GAGAATCAGTTTTTGTATAG+CGG | + | chr5_1:3072667-3072686 | Msa0711200:CDS | 30.0% |
| AGAAATTACGAAAAGAGTTG+CGG | + | chr5_1:3072848-3072867 | Msa0711200:CDS | 30.0% | |
| !! | ATGATGGTGATTTTATTGCA+AGG | - | chr5_1:3071670-3071689 | None:intergenic | 30.0% |
| TTGTGATTTAGGGAAATCAA+AGG | - | chr5_1:3071846-3071865 | None:intergenic | 30.0% | |
| CGTTAGAGATTTGTGATTTA+GGG | - | chr5_1:3071856-3071875 | None:intergenic | 30.0% | |
| ACGTTAGAGATTTGTGATTT+AGG | - | chr5_1:3071857-3071876 | None:intergenic | 30.0% | |
| AACAACAACGGAAAAAATAC+TGG | + | chr5_1:3072043-3072062 | Msa0711200:CDS | 30.0% | |
| CAAACCGGAAAATAAATCTT+GGG | - | chr5_1:3072105-3072124 | None:intergenic | 30.0% | |
| TCAAACCGGAAAATAAATCT+TGG | - | chr5_1:3072106-3072125 | None:intergenic | 30.0% | |
| !! | AGATTTATTTTCCGGTTTGA+CGG | + | chr5_1:3072106-3072125 | Msa0711200:CDS | 30.0% |
| TTTCCATCAATGGATAGAAA+AGG | + | chr5_1:3072238-3072257 | Msa0711200:CDS | 30.0% | |
| ATTACGATACACGATTTATC+CGG | + | chr5_1:3072268-3072287 | Msa0711200:CDS | 30.0% | |
| TTTACAATTGATGTAGCATC+AGG | + | chr5_1:3072550-3072569 | Msa0711200:CDS | 30.0% | |
| TGATTCTCCAATGAAAAATC+TGG | - | chr5_1:3072655-3072674 | None:intergenic | 30.0% | |
| ! | GAGAATCAGTTTTTGTATAG+CGG | + | chr5_1:3072667-3072686 | Msa0711200:CDS | 30.0% |
| AGAAATTACGAAAAGAGTTG+CGG | + | chr5_1:3072848-3072867 | Msa0711200:CDS | 30.0% | |
| TCATTCGTACGGATCTTAAT+CGG | + | chr5_1:3071641-3071660 | Msa0711200:CDS | 35.0% | |
| !!! | AAGGATGGTTTTGATGATGA+TGG | - | chr5_1:3071686-3071705 | None:intergenic | 35.0% |
| TACTGCGAAATCAAACTCAA+AGG | + | chr5_1:3071740-3071759 | Msa0711200:CDS | 35.0% | |
| GTTTCTGATTCTGATACTAG+AGG | - | chr5_1:3071800-3071819 | None:intergenic | 35.0% | |
| !! | AAACGGAGATTTTGATGAGA+GGG | - | chr5_1:3071886-3071905 | None:intergenic | 35.0% |
| !! | AAAACGGAGATTTTGATGAG+AGG | - | chr5_1:3071887-3071906 | None:intergenic | 35.0% |
| TCAACTAACGTTAGATCAAG+AGG | - | chr5_1:3071974-3071993 | None:intergenic | 35.0% | |
| CTGAATTTGCATGTGAAAAC+CGG | - | chr5_1:3072184-3072203 | None:intergenic | 35.0% | |
| ! | CAACCTTTTCTATCCATTGA+TGG | - | chr5_1:3072244-3072263 | None:intergenic | 35.0% |
| CATCAATGGATAGAAAAGGT+TGG | + | chr5_1:3072242-3072261 | Msa0711200:CDS | 35.0% | |
| TGATAATTAACCAAGCACCT+GGG | - | chr5_1:3072369-3072388 | None:intergenic | 35.0% | |
| ! | TTGATAATTAACCAAGCACC+TGG | - | chr5_1:3072370-3072389 | None:intergenic | 35.0% |
| TGGTTAATTATCAAACCCGA+TGG | + | chr5_1:3072376-3072395 | Msa0711200:CDS | 35.0% | |
| ! | AAAAAAGTGTAGTAAACCGG+AGG | + | chr5_1:3072720-3072739 | Msa0711200:CDS | 35.0% |
| TCATTCGTACGGATCTTAAT+CGG | + | chr5_1:3071641-3071660 | Msa0711200:CDS | 35.0% | |
| !!! | AAGGATGGTTTTGATGATGA+TGG | - | chr5_1:3071686-3071705 | None:intergenic | 35.0% |
| TACTGCGAAATCAAACTCAA+AGG | + | chr5_1:3071740-3071759 | Msa0711200:CDS | 35.0% | |
| GTTTCTGATTCTGATACTAG+AGG | - | chr5_1:3071800-3071819 | None:intergenic | 35.0% | |
| !! | AAACGGAGATTTTGATGAGA+GGG | - | chr5_1:3071886-3071905 | None:intergenic | 35.0% |
| !! | AAAACGGAGATTTTGATGAG+AGG | - | chr5_1:3071887-3071906 | None:intergenic | 35.0% |
| TCAACTAACGTTAGATCAAG+AGG | - | chr5_1:3071974-3071993 | None:intergenic | 35.0% | |
| CTGAATTTGCATGTGAAAAC+CGG | - | chr5_1:3072184-3072203 | None:intergenic | 35.0% | |
| ! | CAACCTTTTCTATCCATTGA+TGG | - | chr5_1:3072244-3072263 | None:intergenic | 35.0% |
| CATCAATGGATAGAAAAGGT+TGG | + | chr5_1:3072242-3072261 | Msa0711200:CDS | 35.0% | |
| TGATAATTAACCAAGCACCT+GGG | - | chr5_1:3072369-3072388 | None:intergenic | 35.0% | |
| ! | TTGATAATTAACCAAGCACC+TGG | - | chr5_1:3072370-3072389 | None:intergenic | 35.0% |
| TGGTTAATTATCAAACCCGA+TGG | + | chr5_1:3072376-3072395 | Msa0711200:CDS | 35.0% | |
| ! | AAAAAAGTGTAGTAAACCGG+AGG | + | chr5_1:3072720-3072739 | Msa0711200:CDS | 35.0% |
| TCATCAAAACCATCCTTCTC+CGG | + | chr5_1:3071689-3071708 | Msa0711200:CDS | 40.0% | |
| ! | TTTGATTTCGCAGTAGCATG+TGG | - | chr5_1:3071735-3071754 | None:intergenic | 40.0% |
| TTCAACACTGCAAAACTCGT+AGG | + | chr5_1:3071935-3071954 | Msa0711200:CDS | 40.0% | |
| CAACCGTTGTGAAAAGAACA+GGG | - | chr5_1:3072004-3072023 | None:intergenic | 40.0% | |
| CTCACTCTCAACAACAACAA+CGG | + | chr5_1:3072031-3072050 | Msa0711200:CDS | 40.0% | |
| ! | TTTAACAGTCCGAGTTGAAC+CGG | + | chr5_1:3072078-3072097 | Msa0711200:CDS | 40.0% |
| CGGAAAATAAATCTTGGGTC+CGG | - | chr5_1:3072100-3072119 | None:intergenic | 40.0% | |
| !! | CGGACCCAAGATTTATTTTC+CGG | + | chr5_1:3072098-3072117 | Msa0711200:CDS | 40.0% |
| ! | GTTTTACTTCTCCCTTGACT+TGG | - | chr5_1:3072159-3072178 | None:intergenic | 40.0% |
| CAAGGGAGAAGTAAAACAAC+CGG | + | chr5_1:3072162-3072181 | Msa0711200:CDS | 40.0% | |
| AGACAAAAACCCTTCAAACC+CGG | + | chr5_1:3072210-3072229 | Msa0711200:CDS | 40.0% | |
| TCCATTGATGGAAACTGAAC+CGG | - | chr5_1:3072232-3072251 | None:intergenic | 40.0% | |
| ATTATCAAACCCGATGGTGA+TGG | + | chr5_1:3072382-3072401 | Msa0711200:CDS | 40.0% | |
| TTTCCAAGTACCATCACCAT+CGG | - | chr5_1:3072395-3072414 | None:intergenic | 40.0% | |
| TGATGGTACTTGGAAACCAT+GGG | + | chr5_1:3072399-3072418 | Msa0711200:CDS | 40.0% | |
| TGCAGTATCAGTTCACAGAA+TGG | + | chr5_1:3072520-3072539 | Msa0711200:CDS | 40.0% | |
| AGTATCAGTTCACAGAATGG+TGG | + | chr5_1:3072523-3072542 | Msa0711200:CDS | 40.0% | |
| ! | TTCCGGTCCAGATTTTTCAT+TGG | + | chr5_1:3072645-3072664 | Msa0711200:CDS | 40.0% |
| CTCCAATGAAAAATCTGGAC+CGG | - | chr5_1:3072650-3072669 | None:intergenic | 40.0% | |
| ! | TTTTTCACCGTCAAATCTCG+CGG | - | chr5_1:3072704-3072723 | None:intergenic | 40.0% |
| AGCTGCTATGGATTTGAGTA+TGG | + | chr5_1:3072804-3072823 | Msa0711200:CDS | 40.0% | |
| TCATCAAAACCATCCTTCTC+CGG | + | chr5_1:3071689-3071708 | Msa0711200:CDS | 40.0% | |
| ! | TTTGATTTCGCAGTAGCATG+TGG | - | chr5_1:3071735-3071754 | None:intergenic | 40.0% |
| TTCAACACTGCAAAACTCGT+AGG | + | chr5_1:3071935-3071954 | Msa0711200:CDS | 40.0% | |
| CAACCGTTGTGAAAAGAACA+GGG | - | chr5_1:3072004-3072023 | None:intergenic | 40.0% | |
| CTCACTCTCAACAACAACAA+CGG | + | chr5_1:3072031-3072050 | Msa0711200:CDS | 40.0% | |
| ! | TTTAACAGTCCGAGTTGAAC+CGG | + | chr5_1:3072078-3072097 | Msa0711200:CDS | 40.0% |
| CGGAAAATAAATCTTGGGTC+CGG | - | chr5_1:3072100-3072119 | None:intergenic | 40.0% | |
| !! | CGGACCCAAGATTTATTTTC+CGG | + | chr5_1:3072098-3072117 | Msa0711200:CDS | 40.0% |
| ! | GTTTTACTTCTCCCTTGACT+TGG | - | chr5_1:3072159-3072178 | None:intergenic | 40.0% |
| CAAGGGAGAAGTAAAACAAC+CGG | + | chr5_1:3072162-3072181 | Msa0711200:CDS | 40.0% | |
| AGACAAAAACCCTTCAAACC+CGG | + | chr5_1:3072210-3072229 | Msa0711200:CDS | 40.0% | |
| TCCATTGATGGAAACTGAAC+CGG | - | chr5_1:3072232-3072251 | None:intergenic | 40.0% | |
| ATTATCAAACCCGATGGTGA+TGG | + | chr5_1:3072382-3072401 | Msa0711200:CDS | 40.0% | |
| TTTCCAAGTACCATCACCAT+CGG | - | chr5_1:3072395-3072414 | None:intergenic | 40.0% | |
| TGATGGTACTTGGAAACCAT+GGG | + | chr5_1:3072399-3072418 | Msa0711200:CDS | 40.0% | |
| TGCAGTATCAGTTCACAGAA+TGG | + | chr5_1:3072520-3072539 | Msa0711200:CDS | 40.0% | |
| AGTATCAGTTCACAGAATGG+TGG | + | chr5_1:3072523-3072542 | Msa0711200:CDS | 40.0% | |
| ! | TTCCGGTCCAGATTTTTCAT+TGG | + | chr5_1:3072645-3072664 | Msa0711200:CDS | 40.0% |
| CTCCAATGAAAAATCTGGAC+CGG | - | chr5_1:3072650-3072669 | None:intergenic | 40.0% | |
| ! | TTTTTCACCGTCAAATCTCG+CGG | - | chr5_1:3072704-3072723 | None:intergenic | 40.0% |
| AGCTGCTATGGATTTGAGTA+TGG | + | chr5_1:3072804-3072823 | Msa0711200:CDS | 40.0% | |
| AAGATCCGTACGAATGAGCA+CGG | - | chr5_1:3071638-3071657 | None:intergenic | 45.0% | |
| GCTTGAAGGATGAACTTTGC+CGG | - | chr5_1:3071711-3071730 | None:intergenic | 45.0% | |
| ! | GCAGTGTTGAAAACGCATGA+AGG | - | chr5_1:3071926-3071945 | None:intergenic | 45.0% |
| ! | CGACCCTGTTCTTTTCACAA+CGG | + | chr5_1:3071998-3072017 | Msa0711200:CDS | 45.0% |
| CCAACCGTTGTGAAAAGAAC+AGG | - | chr5_1:3072005-3072024 | None:intergenic | 45.0% | |
| ! | CCTGTTCTTTTCACAACGGT+TGG | + | chr5_1:3072002-3072021 | Msa0711200:CDS | 45.0% |
| ! | AAAACCTGTGGACTGCATTC+CGG | - | chr5_1:3072136-3072155 | None:intergenic | 45.0% |
| ! | TCCACAGGTTTTCCAAGTCA+AGG | + | chr5_1:3072144-3072163 | Msa0711200:CDS | 45.0% |
| ! | CCACAGGTTTTCCAAGTCAA+GGG | + | chr5_1:3072145-3072164 | Msa0711200:CDS | 45.0% |
| GAAACTGAACCGGGTTTGAA+GGG | - | chr5_1:3072222-3072241 | None:intergenic | 45.0% | |
| CCATTGATGGAAACTGAACC+GGG | - | chr5_1:3072231-3072250 | None:intergenic | 45.0% | |
| ACACGATTTATCCGGTTCAC+CGG | + | chr5_1:3072276-3072295 | Msa0711200:CDS | 45.0% | |
| GTAAATCAAACCCAGGTGCT+TGG | + | chr5_1:3072356-3072375 | Msa0711200:CDS | 45.0% | |
| TTCCAAGTACCATCACCATC+GGG | - | chr5_1:3072394-3072413 | None:intergenic | 45.0% | |
| GTGATGGTACTTGGAAACCA+TGG | + | chr5_1:3072398-3072417 | Msa0711200:CDS | 45.0% | |
| GATGGTACTTGGAAACCATG+GGG | + | chr5_1:3072400-3072419 | Msa0711200:CDS | 45.0% | |
| TCCAACGGAGTTTGAGTAAC+CGG | - | chr5_1:3072449-3072468 | None:intergenic | 45.0% | |
| ACTCAAACTCCGTTGGATAC+CGG | + | chr5_1:3072452-3072471 | Msa0711200:CDS | 45.0% | |
| CTGTGAACTGATACTGCAAC+CGG | - | chr5_1:3072518-3072537 | None:intergenic | 45.0% | |
| ACTCCCGTTAACACTCCAAA+CGG | + | chr5_1:3072577-3072596 | Msa0711200:CDS | 45.0% | |
| ! | CTTCCGTTTGGAGTGTTAAC+GGG | - | chr5_1:3072583-3072602 | None:intergenic | 45.0% |
| ! | GCTTCCGTTTGGAGTGTTAA+CGG | - | chr5_1:3072584-3072603 | None:intergenic | 45.0% |
| TTAACACTCCAAACGGAAGC+TGG | + | chr5_1:3072584-3072603 | Msa0711200:CDS | 45.0% | |
| TAACACTCCAAACGGAAGCT+GGG | + | chr5_1:3072585-3072604 | Msa0711200:CDS | 45.0% | |
| AAAGTGTAGTAAACCGGAGG+TGG | + | chr5_1:3072723-3072742 | Msa0711200:CDS | 45.0% | |
| AAGATCCGTACGAATGAGCA+CGG | - | chr5_1:3071638-3071657 | None:intergenic | 45.0% | |
| GCTTGAAGGATGAACTTTGC+CGG | - | chr5_1:3071711-3071730 | None:intergenic | 45.0% | |
| ! | GCAGTGTTGAAAACGCATGA+AGG | - | chr5_1:3071926-3071945 | None:intergenic | 45.0% |
| ! | CGACCCTGTTCTTTTCACAA+CGG | + | chr5_1:3071998-3072017 | Msa0711200:CDS | 45.0% |
| CCAACCGTTGTGAAAAGAAC+AGG | - | chr5_1:3072005-3072024 | None:intergenic | 45.0% | |
| ! | CCTGTTCTTTTCACAACGGT+TGG | + | chr5_1:3072002-3072021 | Msa0711200:CDS | 45.0% |
| ! | AAAACCTGTGGACTGCATTC+CGG | - | chr5_1:3072136-3072155 | None:intergenic | 45.0% |
| ! | TCCACAGGTTTTCCAAGTCA+AGG | + | chr5_1:3072144-3072163 | Msa0711200:CDS | 45.0% |
| ! | CCACAGGTTTTCCAAGTCAA+GGG | + | chr5_1:3072145-3072164 | Msa0711200:CDS | 45.0% |
| GAAACTGAACCGGGTTTGAA+GGG | - | chr5_1:3072222-3072241 | None:intergenic | 45.0% | |
| CCATTGATGGAAACTGAACC+GGG | - | chr5_1:3072231-3072250 | None:intergenic | 45.0% | |
| ACACGATTTATCCGGTTCAC+CGG | + | chr5_1:3072276-3072295 | Msa0711200:CDS | 45.0% | |
| GTAAATCAAACCCAGGTGCT+TGG | + | chr5_1:3072356-3072375 | Msa0711200:CDS | 45.0% | |
| TTCCAAGTACCATCACCATC+GGG | - | chr5_1:3072394-3072413 | None:intergenic | 45.0% | |
| GTGATGGTACTTGGAAACCA+TGG | + | chr5_1:3072398-3072417 | Msa0711200:CDS | 45.0% | |
| GATGGTACTTGGAAACCATG+GGG | + | chr5_1:3072400-3072419 | Msa0711200:CDS | 45.0% | |
| TCCAACGGAGTTTGAGTAAC+CGG | - | chr5_1:3072449-3072468 | None:intergenic | 45.0% | |
| ACTCAAACTCCGTTGGATAC+CGG | + | chr5_1:3072452-3072471 | Msa0711200:CDS | 45.0% | |
| CTGTGAACTGATACTGCAAC+CGG | - | chr5_1:3072518-3072537 | None:intergenic | 45.0% | |
| ACTCCCGTTAACACTCCAAA+CGG | + | chr5_1:3072577-3072596 | Msa0711200:CDS | 45.0% | |
| ! | CTTCCGTTTGGAGTGTTAAC+GGG | - | chr5_1:3072583-3072602 | None:intergenic | 45.0% |
| ! | GCTTCCGTTTGGAGTGTTAA+CGG | - | chr5_1:3072584-3072603 | None:intergenic | 45.0% |
| TTAACACTCCAAACGGAAGC+TGG | + | chr5_1:3072584-3072603 | Msa0711200:CDS | 45.0% | |
| TAACACTCCAAACGGAAGCT+GGG | + | chr5_1:3072585-3072604 | Msa0711200:CDS | 45.0% | |
| AAAGTGTAGTAAACCGGAGG+TGG | + | chr5_1:3072723-3072742 | Msa0711200:CDS | 45.0% | |
| TGGATCCGTGCTCATTCGTA+CGG | + | chr5_1:3071630-3071649 | Msa0711200:CDS | 50.0% | |
| TGAACTTTGCCGGAGAAGGA+TGG | - | chr5_1:3071701-3071720 | None:intergenic | 50.0% | |
| AGGATGAACTTTGCCGGAGA+AGG | - | chr5_1:3071705-3071724 | None:intergenic | 50.0% | |
| CAGTAGCATGTGGAGCTTGA+AGG | - | chr5_1:3071725-3071744 | None:intergenic | 50.0% | |
| ATCTTGGGTCCGGTTCAACT+CGG | - | chr5_1:3072090-3072109 | None:intergenic | 50.0% | |
| ! | TTTCCGGTTTGACGGTGAAC+CGG | + | chr5_1:3072114-3072133 | Msa0711200:CDS | 50.0% |
| ATTCCGGTTCACCGTCAAAC+CGG | - | chr5_1:3072120-3072139 | None:intergenic | 50.0% | |
| !! | CCCTTGACTTGGAAAACCTG+TGG | - | chr5_1:3072148-3072167 | None:intergenic | 50.0% |
| GGAAACTGAACCGGGTTTGA+AGG | - | chr5_1:3072223-3072242 | None:intergenic | 50.0% | |
| CCCGGTTCAGTTTCCATCAA+TGG | + | chr5_1:3072228-3072247 | Msa0711200:CDS | 50.0% | |
| ACCATTGAAGCACACGCAAC+CGG | - | chr5_1:3072298-3072317 | None:intergenic | 50.0% | |
| TTCCTTCCCCTGGTTCACAA+CGG | + | chr5_1:3072329-3072348 | Msa0711200:CDS | 50.0% | |
| TACTGACCCGTTGTGAACCA+GGG | - | chr5_1:3072339-3072358 | None:intergenic | 50.0% | |
| TTACTGACCCGTTGTGAACC+AGG | - | chr5_1:3072340-3072359 | None:intergenic | 50.0% | |
| CGGGTCAGTAAATCAAACCC+AGG | + | chr5_1:3072349-3072368 | Msa0711200:CDS | 50.0% | |
| !! | AACCCGATGGTGATGGTACT+TGG | + | chr5_1:3072389-3072408 | Msa0711200:CDS | 50.0% |
| CCAACGGAGTTTGAGTAACC+GGG | - | chr5_1:3072448-3072467 | None:intergenic | 50.0% | |
| AACGTCGAACCGGTATCCAA+CGG | - | chr5_1:3072464-3072483 | None:intergenic | 50.0% | |
| !! | ATACCGGTTCGACGTTCTTC+CGG | + | chr5_1:3072468-3072487 | Msa0711200:CDS | 50.0% |
| CCTAAATCCCAGCTTCCGTT+TGG | - | chr5_1:3072595-3072614 | None:intergenic | 50.0% | |
| CCAAACGGAAGCTGGGATTT+AGG | + | chr5_1:3072592-3072611 | Msa0711200:CDS | 50.0% | |
| ! | GGAAGCTGGGATTTAGGATC+CGG | + | chr5_1:3072598-3072617 | Msa0711200:CDS | 50.0% |
| ! | TGGGATTTAGGATCCGGTTC+AGG | + | chr5_1:3072604-3072623 | Msa0711200:CDS | 50.0% |
| GTGATGTCCGCGAGATTTGA+CGG | + | chr5_1:3072694-3072713 | Msa0711200:CDS | 50.0% | |
| AGTAAACCGGAGGTGGAAGT+TGG | + | chr5_1:3072730-3072749 | Msa0711200:CDS | 50.0% | |
| TTCACACCAACTTCCACCTC+CGG | - | chr5_1:3072739-3072758 | None:intergenic | 50.0% | |
| TGTGAAGCACGTGACATGCA+CGG | + | chr5_1:3072753-3072772 | Msa0711200:CDS | 50.0% | |
| TGTTGCTCTTGCAGCTGCTA+TGG | + | chr5_1:3072792-3072811 | Msa0711200:CDS | 50.0% | |
| TGGATCCGTGCTCATTCGTA+CGG | + | chr5_1:3071630-3071649 | Msa0711200:CDS | 50.0% | |
| TGAACTTTGCCGGAGAAGGA+TGG | - | chr5_1:3071701-3071720 | None:intergenic | 50.0% | |
| AGGATGAACTTTGCCGGAGA+AGG | - | chr5_1:3071705-3071724 | None:intergenic | 50.0% | |
| CAGTAGCATGTGGAGCTTGA+AGG | - | chr5_1:3071725-3071744 | None:intergenic | 50.0% | |
| ATCTTGGGTCCGGTTCAACT+CGG | - | chr5_1:3072090-3072109 | None:intergenic | 50.0% | |
| ! | TTTCCGGTTTGACGGTGAAC+CGG | + | chr5_1:3072114-3072133 | Msa0711200:CDS | 50.0% |
| ATTCCGGTTCACCGTCAAAC+CGG | - | chr5_1:3072120-3072139 | None:intergenic | 50.0% | |
| !! | CCCTTGACTTGGAAAACCTG+TGG | - | chr5_1:3072148-3072167 | None:intergenic | 50.0% |
| GGAAACTGAACCGGGTTTGA+AGG | - | chr5_1:3072223-3072242 | None:intergenic | 50.0% | |
| CCCGGTTCAGTTTCCATCAA+TGG | + | chr5_1:3072228-3072247 | Msa0711200:CDS | 50.0% | |
| ACCATTGAAGCACACGCAAC+CGG | - | chr5_1:3072298-3072317 | None:intergenic | 50.0% | |
| TTCCTTCCCCTGGTTCACAA+CGG | + | chr5_1:3072329-3072348 | Msa0711200:CDS | 50.0% | |
| TACTGACCCGTTGTGAACCA+GGG | - | chr5_1:3072339-3072358 | None:intergenic | 50.0% | |
| TTACTGACCCGTTGTGAACC+AGG | - | chr5_1:3072340-3072359 | None:intergenic | 50.0% | |
| CGGGTCAGTAAATCAAACCC+AGG | + | chr5_1:3072349-3072368 | Msa0711200:CDS | 50.0% | |
| !! | AACCCGATGGTGATGGTACT+TGG | + | chr5_1:3072389-3072408 | Msa0711200:CDS | 50.0% |
| CCAACGGAGTTTGAGTAACC+GGG | - | chr5_1:3072448-3072467 | None:intergenic | 50.0% | |
| AACGTCGAACCGGTATCCAA+CGG | - | chr5_1:3072464-3072483 | None:intergenic | 50.0% | |
| !! | ATACCGGTTCGACGTTCTTC+CGG | + | chr5_1:3072468-3072487 | Msa0711200:CDS | 50.0% |
| CCTAAATCCCAGCTTCCGTT+TGG | - | chr5_1:3072595-3072614 | None:intergenic | 50.0% | |
| CCAAACGGAAGCTGGGATTT+AGG | + | chr5_1:3072592-3072611 | Msa0711200:CDS | 50.0% | |
| ! | GGAAGCTGGGATTTAGGATC+CGG | + | chr5_1:3072598-3072617 | Msa0711200:CDS | 50.0% |
| ! | TGGGATTTAGGATCCGGTTC+AGG | + | chr5_1:3072604-3072623 | Msa0711200:CDS | 50.0% |
| GTGATGTCCGCGAGATTTGA+CGG | + | chr5_1:3072694-3072713 | Msa0711200:CDS | 50.0% | |
| AGTAAACCGGAGGTGGAAGT+TGG | + | chr5_1:3072730-3072749 | Msa0711200:CDS | 50.0% | |
| TTCACACCAACTTCCACCTC+CGG | - | chr5_1:3072739-3072758 | None:intergenic | 50.0% | |
| TGTGAAGCACGTGACATGCA+CGG | + | chr5_1:3072753-3072772 | Msa0711200:CDS | 50.0% | |
| TGTTGCTCTTGCAGCTGCTA+TGG | + | chr5_1:3072792-3072811 | Msa0711200:CDS | 50.0% | |
| CTAGAGGAACTGTTGCGACG+TGG | - | chr5_1:3071784-3071803 | None:intergenic | 55.0% | |
| AGGTAGCAGCGAGAGAGTGA+GGG | - | chr5_1:3071826-3071845 | None:intergenic | 55.0% | |
| AAGGTAGCAGCGAGAGAGTG+AGG | - | chr5_1:3071827-3071846 | None:intergenic | 55.0% | |
| TGAACCGGAATGCAGTCCAC+AGG | + | chr5_1:3072129-3072148 | Msa0711200:CDS | 55.0% | |
| ACCGGTTGCGTGTGCTTCAA+TGG | + | chr5_1:3072294-3072313 | Msa0711200:CDS | 55.0% | |
| GAACCAGGGGAAGGAACGAA+GGG | - | chr5_1:3072325-3072344 | None:intergenic | 55.0% | |
| TGAACCAGGGGAAGGAACGA+AGG | - | chr5_1:3072326-3072345 | None:intergenic | 55.0% | |
| TCCTTCCCCTGGTTCACAAC+GGG | + | chr5_1:3072330-3072349 | Msa0711200:CDS | 55.0% | |
| ACTGACCCGTTGTGAACCAG+GGG | - | chr5_1:3072338-3072357 | None:intergenic | 55.0% | |
| CCCGGTTACTCAAACTCCGT+TGG | + | chr5_1:3072445-3072464 | Msa0711200:CDS | 55.0% | |
| TCCGGTTCAGGATCAAGACC+CGG | + | chr5_1:3072616-3072635 | Msa0711200:CDS | 55.0% | |
| CTAGAGGAACTGTTGCGACG+TGG | - | chr5_1:3071784-3071803 | None:intergenic | 55.0% | |
| AGGTAGCAGCGAGAGAGTGA+GGG | - | chr5_1:3071826-3071845 | None:intergenic | 55.0% | |
| AAGGTAGCAGCGAGAGAGTG+AGG | - | chr5_1:3071827-3071846 | None:intergenic | 55.0% | |
| TGAACCGGAATGCAGTCCAC+AGG | + | chr5_1:3072129-3072148 | Msa0711200:CDS | 55.0% | |
| ACCGGTTGCGTGTGCTTCAA+TGG | + | chr5_1:3072294-3072313 | Msa0711200:CDS | 55.0% | |
| GAACCAGGGGAAGGAACGAA+GGG | - | chr5_1:3072325-3072344 | None:intergenic | 55.0% | |
| TGAACCAGGGGAAGGAACGA+AGG | - | chr5_1:3072326-3072345 | None:intergenic | 55.0% | |
| TCCTTCCCCTGGTTCACAAC+GGG | + | chr5_1:3072330-3072349 | Msa0711200:CDS | 55.0% | |
| ACTGACCCGTTGTGAACCAG+GGG | - | chr5_1:3072338-3072357 | None:intergenic | 55.0% | |
| CCCGGTTACTCAAACTCCGT+TGG | + | chr5_1:3072445-3072464 | Msa0711200:CDS | 55.0% | |
| TCCGGTTCAGGATCAAGACC+CGG | + | chr5_1:3072616-3072635 | Msa0711200:CDS | 55.0% | |
| ACTGTTGCGACGTGGCAAGG+TGG | - | chr5_1:3071776-3071795 | None:intergenic | 60.0% | |
| GGAACTGTTGCGACGTGGCA+AGG | - | chr5_1:3071779-3071798 | None:intergenic | 60.0% | |
| AGCACACGCAACCGGTGAAC+CGG | - | chr5_1:3072290-3072309 | None:intergenic | 60.0% | |
| ACACCCTTCGTTCCTTCCCC+TGG | + | chr5_1:3072319-3072338 | Msa0711200:CDS | 60.0% | |
| ACCCGTTGTGAACCAGGGGA+AGG | - | chr5_1:3072334-3072353 | None:intergenic | 60.0% | |
| CAAGCTTCGAGTCGACCCCA+TGG | - | chr5_1:3072418-3072437 | None:intergenic | 60.0% | |
| !! | CATGGGGTCGACTCGAAGCT+TGG | + | chr5_1:3072416-3072435 | Msa0711200:CDS | 60.0% |
| CTCGAAGCTTGGCGTGAACC+CGG | + | chr5_1:3072427-3072446 | Msa0711200:CDS | 60.0% | |
| TGGCCGGAAGAACGTCGAAC+CGG | - | chr5_1:3072474-3072493 | None:intergenic | 60.0% | |
| GAGTGTGACTGGATCAGCGG+TGG | - | chr5_1:3072494-3072513 | None:intergenic | 60.0% | |
| GGCGAGTGTGACTGGATCAG+CGG | - | chr5_1:3072497-3072516 | None:intergenic | 60.0% | |
| GCTGATCCAGTCACACTCGC+CGG | + | chr5_1:3072496-3072515 | Msa0711200:CDS | 60.0% | |
| CCCGGGTCTTGATCCTGAAC+CGG | - | chr5_1:3072620-3072639 | None:intergenic | 60.0% | |
| CCGGTTCAGGATCAAGACCC+GGG | + | chr5_1:3072617-3072636 | Msa0711200:CDS | 60.0% | |
| TCAGGATCAAGACCCGGGTC+TGG | + | chr5_1:3072622-3072641 | Msa0711200:CDS | 60.0% | |
| ! | TCAAGACCCGGGTCTGGTTC+CGG | + | chr5_1:3072628-3072647 | Msa0711200:CDS | 60.0% |
| ATCTGGACCGGAACCAGACC+CGG | - | chr5_1:3072638-3072657 | None:intergenic | 60.0% | |
| ACTGTTGCGACGTGGCAAGG+TGG | - | chr5_1:3071776-3071795 | None:intergenic | 60.0% | |
| GGAACTGTTGCGACGTGGCA+AGG | - | chr5_1:3071779-3071798 | None:intergenic | 60.0% | |
| AGCACACGCAACCGGTGAAC+CGG | - | chr5_1:3072290-3072309 | None:intergenic | 60.0% | |
| ACACCCTTCGTTCCTTCCCC+TGG | + | chr5_1:3072319-3072338 | Msa0711200:CDS | 60.0% | |
| ACCCGTTGTGAACCAGGGGA+AGG | - | chr5_1:3072334-3072353 | None:intergenic | 60.0% | |
| CAAGCTTCGAGTCGACCCCA+TGG | - | chr5_1:3072418-3072437 | None:intergenic | 60.0% | |
| !! | CATGGGGTCGACTCGAAGCT+TGG | + | chr5_1:3072416-3072435 | Msa0711200:CDS | 60.0% |
| CTCGAAGCTTGGCGTGAACC+CGG | + | chr5_1:3072427-3072446 | Msa0711200:CDS | 60.0% | |
| TGGCCGGAAGAACGTCGAAC+CGG | - | chr5_1:3072474-3072493 | None:intergenic | 60.0% | |
| GAGTGTGACTGGATCAGCGG+TGG | - | chr5_1:3072494-3072513 | None:intergenic | 60.0% | |
| GGCGAGTGTGACTGGATCAG+CGG | - | chr5_1:3072497-3072516 | None:intergenic | 60.0% | |
| GCTGATCCAGTCACACTCGC+CGG | + | chr5_1:3072496-3072515 | Msa0711200:CDS | 60.0% | |
| CCCGGGTCTTGATCCTGAAC+CGG | - | chr5_1:3072620-3072639 | None:intergenic | 60.0% | |
| CCGGTTCAGGATCAAGACCC+GGG | + | chr5_1:3072617-3072636 | Msa0711200:CDS | 60.0% | |
| TCAGGATCAAGACCCGGGTC+TGG | + | chr5_1:3072622-3072641 | Msa0711200:CDS | 60.0% | |
| ! | TCAAGACCCGGGTCTGGTTC+CGG | + | chr5_1:3072628-3072647 | Msa0711200:CDS | 60.0% |
| ATCTGGACCGGAACCAGACC+CGG | - | chr5_1:3072638-3072657 | None:intergenic | 60.0% | |
| GTGACTGGATCAGCGGTGGC+CGG | - | chr5_1:3072490-3072509 | None:intergenic | 65.0% | |
| CTGCAACCGGCGAGTGTGAC+TGG | - | chr5_1:3072505-3072524 | None:intergenic | 65.0% | |
| TCTGGACCGGAACCAGACCC+GGG | - | chr5_1:3072637-3072656 | None:intergenic | 65.0% | |
| GTGACTGGATCAGCGGTGGC+CGG | - | chr5_1:3072490-3072509 | None:intergenic | 65.0% | |
| CTGCAACCGGCGAGTGTGAC+TGG | - | chr5_1:3072505-3072524 | None:intergenic | 65.0% | |
| TCTGGACCGGAACCAGACCC+GGG | - | chr5_1:3072637-3072656 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 3071629 | 3072876 | 3071629 | ID=Msa0711200;Name=Msa0711200 |
| chr5_1 | mRNA | 3071629 | 3072876 | 3071629 | ID=Msa0711200-mRNA-1;Parent=Msa0711200;Name=Msa0711200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|415 |
| chr5_1 | exon | 3071629 | 3072876 | 3071629 | ID=Msa0711200-mRNA-1:exon:1047;Parent=Msa0711200-mRNA-1 |
| chr5_1 | CDS | 3071629 | 3072876 | 3071629 | ID=Msa0711200-mRNA-1:cds;Parent=Msa0711200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
