AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0176980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176980 MtrunA17_Chr1g0199671 98.489 331 5 0 1 331 1 331 0.0 672
Msa0176980 MtrunA17_Chr1g0213161 56.202 258 77 10 74 329 10 233 1.05e-74 229
Msa0176980 MtrunA17_Chr2g0326771 47.312 186 69 6 121 306 124 280 1.89e-43 152
Msa0176980 MtrunA17_Chr1g0146231 35.093 322 132 11 9 306 30 298 1.43e-38 139
Msa0176980 MtrunA17_Chr3g0140331 34.564 298 133 8 17 306 74 317 6.73e-37 135
Msa0176980 MtrunA17_Chr4g0035891 34.815 270 87 8 38 306 94 275 1.08e-36 133
Msa0176980 MtrunA17_Chr4g0028961 64.894 94 28 1 238 331 228 316 8.61e-36 132
Msa0176980 MtrunA17_Chr7g0253101 46.061 165 81 4 143 306 95 252 1.60e-35 129
Msa0176980 MtrunA17_Chr6g0461591 36.398 261 121 9 67 308 24 258 7.89e-35 127
Msa0176980 MtrunA17_Chr5g0404981 36.131 274 120 10 48 308 135 366 2.39e-34 129
Msa0176980 MtrunA17_Chr3g0145121 72.603 73 19 1 234 306 208 279 3.81e-33 124
Msa0176980 MtrunA17_Chr8g0340401 81.538 65 12 0 242 306 226 290 7.50e-33 124
Msa0176980 MtrunA17_Chr8g0372291 62.366 93 26 3 216 308 201 284 1.58e-31 119
Msa0176980 MtrunA17_Chr1g0169431 80.000 65 13 0 242 306 172 236 1.65e-31 118
Msa0176980 MtrunA17_Chr5g0395391 55.238 105 45 2 203 306 231 334 1.98e-31 120
Msa0176980 MtrunA17_Chr5g0395391 54.000 100 44 2 207 305 133 231 2.46e-28 112
Msa0176980 MtrunA17_Chr7g0232671 61.290 62 24 0 242 303 187 248 1.10e-20 89.7
Msa0176980 MtrunA17_Chr7g0232701 58.065 62 26 0 242 303 73 134 1.77e-19 83.2
Msa0176980 MtrunA17_Chr7g0232681 36.567 134 65 2 175 303 75 193 6.49e-19 83.6
Msa0176980 MtrunA17_Chr7g0267351 55.844 77 33 1 177 253 36 111 5.92e-17 75.5
Msa0176980 MtrunA17_Chr5g0404131 52.083 48 23 0 227 274 177 224 1.72e-11 64.3
Msa0176980 MtrunA17_Chr7g0271861 67.647 34 11 0 244 277 24 57 8.62e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176980 AT1G08010.2 40.678 236 110 5 85 318 89 296 1.48e-42 149
Msa0176980 AT1G08010.1 40.678 236 110 5 85 318 89 296 1.48e-42 149
Msa0176980 AT1G08010.3 40.678 236 110 5 85 318 89 296 1.48e-42 149
Msa0176980 AT3G54810.1 71.875 96 20 2 240 328 227 322 4.44e-42 149
Msa0176980 AT3G54810.2 71.875 96 20 2 240 328 227 322 4.44e-42 149
Msa0176980 AT5G25830.1 40.664 241 112 8 67 306 73 283 2.85e-38 139
Msa0176980 AT1G08000.2 42.564 195 87 3 115 309 116 285 1.05e-37 137
Msa0176980 AT1G08000.1 42.564 195 87 3 115 309 116 285 1.05e-37 137
Msa0176980 AT4G32890.1 34.967 306 119 12 17 306 20 261 3.15e-37 135
Msa0176980 AT5G66320.2 39.015 264 122 9 55 315 95 322 1.04e-36 135
Msa0176980 AT5G66320.1 39.015 264 122 9 55 315 95 322 1.04e-36 135
Msa0176980 AT3G24050.1 78.462 65 14 0 242 306 194 258 1.03e-31 120
Msa0176980 AT3G51080.1 71.053 76 21 1 242 317 221 295 1.05e-31 121
Msa0176980 AT4G36240.1 54.545 99 43 1 208 306 132 228 2.84e-31 118
Msa0176980 AT3G60530.1 74.242 66 17 0 241 306 157 222 9.59e-31 116
Msa0176980 AT2G28340.1 65.333 75 26 0 244 318 193 267 1.14e-30 117
Msa0176980 AT2G45050.1 72.727 66 18 0 241 306 178 243 2.93e-30 116
Msa0176980 AT4G34680.1 63.158 76 28 0 242 317 180 255 5.48e-29 112
Msa0176980 AT4G34680.2 63.158 76 28 0 242 317 180 255 5.48e-29 112
Msa0176980 AT3G45170.1 40.000 140 79 3 168 306 44 179 4.83e-28 108
Msa0176980 AT5G26930.1 54.545 44 18 1 234 277 20 61 4.60e-11 60.1

Find 138 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGGTGAAATTGAAATTA+AGG 0.183082 1_4:-63672477 None:intergenic
GAGAGTGAAGAAGGTTTAAA+TGG 0.266308 1_4:-63672348 None:intergenic
CTAGCAGCAGGCCGGTATTC+GGG 0.281895 1_4:-63676739 None:intergenic
AAATGAATCGTCCACAATAT+TGG 0.301923 1_4:-63676146 None:intergenic
AATAAACTAAGCTTAGTTTC+AGG 0.316869 1_4:+63672499 Msa0176980:five_prime_UTR
ACAACTCGTTGGCGAGTATC+TGG 0.323132 1_4:+63674610 Msa0176980:CDS
CTGCTTTCAAGGACAGAAAT+AGG 0.331261 1_4:-63676265 None:intergenic
TTGACTTGCAGAGAAGAAAA+TGG 0.332195 1_4:+63674473 Msa0176980:intron
GTTCGAAGATCTTCTTTCAT+TGG 0.338071 1_4:+63676114 Msa0176980:intron
GTCTCTCCAGAAGAGAGCTT+TGG 0.342561 1_4:-63676523 None:intergenic
CAATGCATGCATTTCCTAAC+AGG 0.350621 1_4:-63676619 None:intergenic
ACAGAAGGAAAGGGAAGAAA+AGG 0.361946 1_4:+63677047 Msa0176980:three_prime_UTR
AGCAGGAACTGCTGCTTTCA+AGG 0.362822 1_4:-63676276 None:intergenic
ACTAGCAGCAGGCCGGTATT+CGG 0.363594 1_4:-63676740 None:intergenic
GGCTGTGGGGCGTGGACGCT+TGG 0.367618 1_4:-63676359 None:intergenic
TCTCTACTCACCGGATCAAC+GGG 0.368770 1_4:-63674693 None:intergenic
GTCCGCAAGGCACGGGGATG+GGG 0.378251 1_4:-63676327 None:intergenic
GAAGAAAAGGGTAGGATCTT+AGG 0.378964 1_4:+63677060 Msa0176980:three_prime_UTR
TATCCTTGCATCTCATTTCA+AGG 0.385918 1_4:-63676807 None:intergenic
CAATGGAGGGCAGGTCCAAT+GGG 0.390212 1_4:+63676661 Msa0176980:CDS
CGTCCGCAAGGCACGGGGAT+GGG 0.396980 1_4:-63676328 None:intergenic
GAGGTCTGAAGTACTATTGC+CGG 0.397375 1_4:-63674658 None:intergenic
GCACTCCAATTCGCACAAAA+AGG 0.399415 1_4:+63676783 Msa0176980:CDS
AACTAAGCTTAGTTTATTTG+AGG 0.403480 1_4:-63672494 None:intergenic
ACAATGGAGGGCAGGTCCAA+TGG 0.404651 1_4:+63676660 Msa0176980:CDS
AAGGCGAGAACATTGGCGTT+TGG 0.409757 1_4:-63676859 None:intergenic
CCTTGGAATACAACATTTGA+AGG 0.412271 1_4:+63676878 Msa0176980:CDS
TTGGTTTCTTGACAATAATC+CGG 0.416836 1_4:-63676504 None:intergenic
AGGAAAGAGGAGAGTGAAGA+AGG 0.420384 1_4:-63672357 None:intergenic
TGCCCTCCATTGTGGAGTCT+TGG 0.422561 1_4:-63676650 None:intergenic
AAGAAACCAAAGCTCTCTTC+TGG 0.429167 1_4:+63676517 Msa0176980:CDS
TGAGAAGAGAATGGTAGAAA+AGG 0.440839 1_4:-63672445 None:intergenic
CCCTACTTCCTCTTCTGTTG+AGG 0.447338 1_4:+63676414 Msa0176980:CDS
TTCTGTTCGCCACTGTCAGC+TGG 0.447903 1_4:-63676586 None:intergenic
AGAATGGTTCACTACCTGTT+AGG 0.449879 1_4:+63676605 Msa0176980:CDS
CGTGCACGTCCGCAAGGCAC+GGG 0.450634 1_4:-63676334 None:intergenic
GCTGTCAGCAAGGAGGACTC+TGG 0.452116 1_4:+63676217 Msa0176980:CDS
GAAAGCAGCAGTTCCTGCTC+TGG 0.453160 1_4:+63676280 Msa0176980:CDS
GAAGAAGGTTTAAATGGTAA+AGG 0.455472 1_4:-63672342 None:intergenic
TGCGAATTGGAGTGCACAGC+TGG 0.458877 1_4:-63676775 None:intergenic
TTGTTTCATTTCAATCACTC+TGG 0.458923 1_4:+63677239 Msa0176980:three_prime_UTR
AGGGCTGGAATGGGGAGAAT+AGG 0.459690 1_4:+63677015 Msa0176980:three_prime_UTR
ATTAATAGAACAGAAGGAAA+GGG 0.461623 1_4:+63677038 Msa0176980:three_prime_UTR
GGCGGAGCTCCCCGTTGATC+CGG 0.465097 1_4:+63674683 Msa0176980:CDS
AAACGCCAATGTTCTCGCCT+TGG 0.466290 1_4:+63676861 Msa0176980:CDS
TGGTTTCTTGACAATAATCC+GGG 0.466726 1_4:-63676503 None:intergenic
TGAAGGGAACTGAGCCTAGT+TGG 0.467108 1_4:+63676895 Msa0176980:exon
AAGAAGGTTTAAATGGTAAA+GGG 0.468904 1_4:-63672341 None:intergenic
CAGAAGGAAAGGGAAGAAAA+GGG 0.470054 1_4:+63677048 Msa0176980:three_prime_UTR
GAGAGAGAGAATGTGATGGA+TGG 0.472862 1_4:-63672292 None:intergenic
TGCGGTGTACGCTACAAGTC+GGG 0.473402 1_4:+63676706 Msa0176980:CDS
GGATTGAAGGCTGTGGGGCG+TGG 0.478430 1_4:-63676367 None:intergenic
TGGAGTGAGTTATTTGAAAG+AGG 0.480052 1_4:-63672377 None:intergenic
CCTTCAAATGTTGTATTCCA+AGG 0.482354 1_4:-63676878 None:intergenic
GTTGTAGTTTGCCGCGGAGG+AGG 0.484221 1_4:-63674592 None:intergenic
GCCGACTATTCCCCGAATAC+CGG 0.484840 1_4:+63676728 Msa0176980:CDS
CTCTCTACTCACCGGATCAA+CGG 0.485631 1_4:-63674694 None:intergenic
AGATCTTCTTTCATTGGAGT+GGG 0.485791 1_4:+63676120 Msa0176980:CDS
AAGATCTTCTTTCATTGGAG+TGG 0.486353 1_4:+63676119 Msa0176980:CDS
ACGTCCGCAAGGCACGGGGA+TGG 0.486480 1_4:-63676329 None:intergenic
CCTCAACAGAAGAGGAAGTA+GGG 0.487341 1_4:-63676414 None:intergenic
AATAGGATTAATAGAACAGA+AGG 0.488681 1_4:+63677032 Msa0176980:three_prime_UTR
AGTTATTTGAAAGAGGAAAG+AGG 0.495306 1_4:-63672370 None:intergenic
CATGGCAGAACGAGGATTGA+AGG 0.499510 1_4:-63676380 None:intergenic
GAGAGAGGGGAATAGTGTGT+TGG 0.502989 1_4:-63672397 None:intergenic
AGCAGCAGTTCCTGCTCTGG+TGG 0.510966 1_4:+63676283 Msa0176980:CDS
AGCGGTGTCAACATCGTCGA+CGG 0.513583 1_4:-63674556 None:intergenic
AGAACGAGGATTGAAGGCTG+TGG 0.514782 1_4:-63676374 None:intergenic
GATTAATAGAACAGAAGGAA+AGG 0.514944 1_4:+63677037 Msa0176980:three_prime_UTR
GCGTGCACGTCCGCAAGGCA+CGG 0.517517 1_4:-63676335 None:intergenic
TTTAGATCACTTAGGTCGGT+AGG 0.519782 1_4:+63677092 Msa0176980:three_prime_UTR
GAACGAGGATTGAAGGCTGT+GGG 0.520494 1_4:-63676373 None:intergenic
AAAGAGTAGTGAGAAGAGAA+TGG 0.524359 1_4:-63672454 None:intergenic
ATTGGACCTGCCCTCCATTG+TGG 0.524395 1_4:-63676658 None:intergenic
AACACCGAGTCAGACTCATT+TGG 0.524475 1_4:-63674633 None:intergenic
GGAGGGCAATGAAGCGGCAG+CGG 0.526729 1_4:-63674574 None:intergenic
GCCGGTATTCGGGGAATAGT+CGG 0.526797 1_4:-63676729 None:intergenic
GCGGTGTCAACATCGTCGAC+GGG 0.527922 1_4:-63674555 None:intergenic
CGCGGAGGAGGGCAATGAAG+CGG 0.533925 1_4:-63674580 None:intergenic
GCCTTGGTCGAGATAACATT+AGG 0.536294 1_4:-63676448 None:intergenic
TCAAGGACAGAAATAGGACT+TGG 0.539012 1_4:-63676259 None:intergenic
CTTGCAGAGAAGAAAATGGC+TGG 0.540090 1_4:+63674477 Msa0176980:intron
TTGCTGACAGCTGATGATGA+TGG 0.540546 1_4:-63676205 None:intergenic
CTGTCAGCAAGGAGGACTCT+GGG 0.542617 1_4:+63676218 Msa0176980:CDS
TTGTAGTTTGCCGCGGAGGA+GGG 0.553031 1_4:-63674591 None:intergenic
TAGCAGCAGGCCGGTATTCG+GGG 0.557503 1_4:-63676738 None:intergenic
CATGTTCTCCTCAACAGAAG+AGG 0.558411 1_4:-63676422 None:intergenic
AAAATCTGAAGACAGCGCCT+TGG 0.558879 1_4:-63676464 None:intergenic
GTCCCCATCCCCGTGCCTTG+CGG 0.560563 1_4:+63676325 Msa0176980:CDS
TTGGAGCGTGCACGTCCGCA+AGG 0.560713 1_4:-63676340 None:intergenic
TTTATAATATCCATATCCAT+GGG 0.561480 1_4:+63677143 Msa0176980:three_prime_UTR
CGAGTTGTAGTTTGCCGCGG+AGG 0.567794 1_4:-63674595 None:intergenic
TCAGCTGGAGCAGTAGGAAG+TGG 0.567950 1_4:-63676571 None:intergenic
CCACTGTCAGCTGGAGCAGT+AGG 0.567950 1_4:-63676577 None:intergenic
GAAGGTTTAAATGGTAAAGG+GGG 0.570052 1_4:-63672339 None:intergenic
GGAGAGTCTCACAATGAAAG+TGG 0.570456 1_4:+63676174 Msa0176980:CDS
ATACGACGCGACTCTAGATA+AGG 0.574384 1_4:-63676935 None:intergenic
TCCTCAACAGAAGAGGAAGT+AGG 0.578279 1_4:-63676415 None:intergenic
CGCGGCAAACTACAACTCGT+TGG 0.579753 1_4:+63674599 Msa0176980:CDS
AACCAAGACTCCACAATGGA+GGG 0.579995 1_4:+63676648 Msa0176980:CDS
AAGACTCCACAATGGAGGGC+AGG 0.580027 1_4:+63676652 Msa0176980:CDS
CAAAACGTTGGACTAGCAGC+AGG 0.583276 1_4:-63676751 None:intergenic
CTGGCCAAATGAGTCTGACT+CGG 0.584259 1_4:+63674629 Msa0176980:CDS
GTATTCCAAGGCGAGAACAT+TGG 0.589206 1_4:-63676866 None:intergenic
GCTGACAGTGGCGAACAGAA+TGG 0.590330 1_4:+63676589 Msa0176980:CDS
TTGCGGTGTACGCTACAAGT+CGG 0.591752 1_4:+63676705 Msa0176980:CDS
AAAACACTCTGCAATGCTTG+CGG 0.597816 1_4:+63676688 Msa0176980:CDS
ATCATCATCAGCTGTCAGCA+AGG 0.601103 1_4:+63676207 Msa0176980:CDS
CTTGGAATACAACATTTGAA+GGG 0.601413 1_4:+63676879 Msa0176980:exon
CGCTTCATTGCCCTCCTCCG+CGG 0.601691 1_4:+63674581 Msa0176980:CDS
CAACGAGTTGTAGTTTGCCG+CGG 0.602863 1_4:-63674598 None:intergenic
TGCACAGCTGGACAAAACGT+TGG 0.609672 1_4:-63676763 None:intergenic
GGAGAGAGAAATCTCCAACT+AGG 0.610583 1_4:-63676909 None:intergenic
GGTCCTTGAAATGAGATGCA+AGG 0.611789 1_4:+63676804 Msa0176980:CDS
CAATAGTACTTCAGACCTCT+CGG 0.613630 1_4:+63674662 Msa0176980:CDS
GCCTAATGTTATCTCGACCA+AGG 0.613946 1_4:+63676447 Msa0176980:CDS
AGGAAAGGGAAGAAAAGGGT+AGG 0.615212 1_4:+63677052 Msa0176980:three_prime_UTR
GTGCACGTCCGCAAGGCACG+GGG 0.618240 1_4:-63676333 None:intergenic
ACGTTGGACTAGCAGCAGGC+CGG 0.619617 1_4:-63676747 None:intergenic
CTCAACAGAAGAGGAAGTAG+GGG 0.627104 1_4:-63676413 None:intergenic
TAACCAAGACTCCACAATGG+AGG 0.629519 1_4:+63676647 Msa0176980:CDS
AGTAGGGGAAATGAGTTGCA+TGG 0.640358 1_4:-63676398 None:intergenic
AGAAGGTTTAAATGGTAAAG+GGG 0.642490 1_4:-63672340 None:intergenic
AAGGTTTAAATGGTAAAGGG+GGG 0.648172 1_4:-63672338 None:intergenic
TAATTTACTCAAATTCAACA+AGG 0.648312 1_4:+63672777 Msa0176980:five_prime_UTR
CGGTGTCAACATCGTCGACG+GGG 0.659885 1_4:-63674554 None:intergenic
ATGAGTTGCATGGCAGAACG+AGG 0.661756 1_4:-63676388 None:intergenic
AACGAGGATTGAAGGCTGTG+GGG 0.665902 1_4:-63676372 None:intergenic
ACGCGACTCTAGATAAGGCG+AGG 0.670462 1_4:-63676930 None:intergenic
AATGGAGGGCAGGTCCAATG+GGG 0.678887 1_4:+63676662 Msa0176980:CDS
CAACGGGGAGCTCCGCCGAG+AGG 0.679446 1_4:-63674677 None:intergenic
CCTACTGCTCCAGCTGACAG+TGG 0.685510 1_4:+63676577 Msa0176980:CDS
ATCATCAGCTGTCAGCAAGG+AGG 0.691864 1_4:+63676210 Msa0176980:CDS
GGAGTGGGTGTCCAATATTG+TGG 0.693703 1_4:+63676135 Msa0176980:CDS
AGATAACCAAGACTCCACAA+TGG 0.734467 1_4:+63676644 Msa0176980:CDS
CTCTACTCACCGGATCAACG+GGG 0.746525 1_4:-63674692 None:intergenic
GATGGGGACGTAAATCCCTG+TGG 0.752387 1_4:-63676311 None:intergenic
TAGTACTTCAGACCTCTCGG+CGG 0.759629 1_4:+63674665 Msa0176980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCACTTATTAAAAAATAT+GGG - chr1_4:63673298-63673317 None:intergenic 10.0%
!!! TTTTTTTTTTAATCTAAAGA+AGG + chr1_4:63674266-63674285 Msa0176980:intron 10.0%
!!! AACTTTACTTTATTTATTTT+TGG - chr1_4:63675301-63675320 None:intergenic 10.0%
!!! AATATAAAGTATTTATAGAA+AGG + chr1_4:63675424-63675443 Msa0176980:intron 10.0%
!!! ATATAAAGTATTTATAGAAA+GGG + chr1_4:63675425-63675444 Msa0176980:intron 10.0%
!! AAATAAAATAAAACAAACAT+GGG - chr1_4:63675666-63675685 None:intergenic 10.0%
!! AAAATAAAATAAAACAAACA+TGG - chr1_4:63675667-63675686 None:intergenic 10.0%
!!! GTTATAAACAATTTTGATTT+TGG + chr1_4:63672669-63672688 Msa0176980:intron 15.0%
!! AATAAACAAATTAAGCAAAA+TGG - chr1_4:63672712-63672731 None:intergenic 15.0%
!!! TTTGTTTATTTTTATTATGC+AGG + chr1_4:63672722-63672741 Msa0176980:intron 15.0%
!! GTTTCACTTATTAAAAAATA+TGG - chr1_4:63673299-63673318 None:intergenic 15.0%
!!! TTTTTTAATAAGTGAAACAA+AGG + chr1_4:63673301-63673320 Msa0176980:intron 15.0%
!!! TTTTTAATAAGTGAAACAAA+GGG + chr1_4:63673302-63673321 Msa0176980:intron 15.0%
!!! AAATAATTAGTGTTTTCATT+TGG - chr1_4:63673352-63673371 None:intergenic 15.0%
!! AATATAGTATTTCAATACAA+GGG + chr1_4:63673616-63673635 Msa0176980:intron 15.0%
!! TTGTTTCAAAAGAAAAATAT+TGG + chr1_4:63674012-63674031 Msa0176980:intron 15.0%
!! TGTTTCAAAAGAAAAATATT+GGG + chr1_4:63674013-63674032 Msa0176980:intron 15.0%
!!! AAGTCATTTTAATATCTATT+TGG + chr1_4:63674139-63674158 Msa0176980:intron 15.0%
!! AGAAAAAACGAAATTAAATA+GGG - chr1_4:63674330-63674349 None:intergenic 15.0%
!! AAGAAAAAACGAAATTAAAT+AGG - chr1_4:63674331-63674350 None:intergenic 15.0%
!! GAAAAAAATTATTTCGTAAT+AGG + chr1_4:63674782-63674801 Msa0176980:intron 15.0%
!!! TATAAGTTAGTAAAATCTTT+TGG - chr1_4:63675081-63675100 None:intergenic 15.0%
!!! ATAATAAAGTTTTTTTATCG+AGG + chr1_4:63675098-63675117 Msa0176980:intron 15.0%
!! TCTCTACAAAAAAAATAATA+TGG - chr1_4:63675151-63675170 None:intergenic 15.0%
!!! AAGAGTAATATACTTTTTTT+TGG + chr1_4:63675738-63675757 Msa0176980:intron 15.0%
!!! TTGTTGAATTTTATTTCTTT+TGG + chr1_4:63676976-63676995 Msa0176980:three_prime_UTR 15.0%
!! TAATTTACTCAAATTCAACA+AGG + chr1_4:63672777-63672796 Msa0176980:five_prime_UTR 20.0%
!! TATCTTCAATTTGATTCTAA+AGG + chr1_4:63672912-63672931 Msa0176980:intron 20.0%
!! ATCTTCAATTTGATTCTAAA+GGG + chr1_4:63672913-63672932 Msa0176980:intron 20.0%
!!! TTTTTTAATCAAGGGTATTT+TGG - chr1_4:63673101-63673120 None:intergenic 20.0%
!!! TTTGAAGGTTTTTTAATCAA+GGG - chr1_4:63673109-63673128 None:intergenic 20.0%
!!! TTTTGAAGGTTTTTTAATCA+AGG - chr1_4:63673110-63673129 None:intergenic 20.0%
!! ATAAAAGTAAAAGAACTTAG+AGG - chr1_4:63673516-63673535 None:intergenic 20.0%
!! GAATATAGTATTTCAATACA+AGG + chr1_4:63673615-63673634 Msa0176980:intron 20.0%
!!! TGCTTACATTTTATTTTAGA+CGG + chr1_4:63673939-63673958 Msa0176980:intron 20.0%
!! AGATATTAAAATGACTTGAT+TGG - chr1_4:63674136-63674155 None:intergenic 20.0%
!!! TGGTTTTTCTTTTTTGATAA+AGG + chr1_4:63674914-63674933 Msa0176980:intron 20.0%
!!! GTCGAAAAATGATTTTTTTA+AGG + chr1_4:63675197-63675216 Msa0176980:intron 20.0%
!!! TAAAGGAATTTTCTACTTTT+TGG - chr1_4:63675354-63675373 None:intergenic 20.0%
!! ATTATTTGGATCATCATTAT+TGG + chr1_4:63675543-63675562 Msa0176980:intron 20.0%
!! TGAAGGTTCATTATTTATTT+AGG - chr1_4:63675615-63675634 None:intergenic 20.0%
!! TAAATAATGAACCTTCAAAT+TGG + chr1_4:63675618-63675637 Msa0176980:intron 20.0%
!! CATGATACTTATTAATACAA+AGG - chr1_4:63675907-63675926 None:intergenic 20.0%
!!! ATTTTATTTCTTTTGGTCAT+TGG + chr1_4:63676983-63677002 Msa0176980:three_prime_UTR 20.0%
!!! TTTTATAATATCCATATCCA+TGG + chr1_4:63677142-63677161 Msa0176980:three_prime_UTR 20.0%
!! TTTATAATATCCATATCCAT+GGG + chr1_4:63677143-63677162 Msa0176980:three_prime_UTR 20.0%
! AAGAAGGTTTAAATGGTAAA+GGG - chr1_4:63672344-63672363 None:intergenic 25.0%
! TTGAGGTGAAATTGAAATTA+AGG - chr1_4:63672480-63672499 None:intergenic 25.0%
! AACTAAGCTTAGTTTATTTG+AGG - chr1_4:63672497-63672516 None:intergenic 25.0%
! AATAAACTAAGCTTAGTTTC+AGG + chr1_4:63672499-63672518 Msa0176980:five_prime_UTR 25.0%
!! GTTCTTTTCATTTTCTCATT+TGG + chr1_4:63672526-63672545 Msa0176980:intron 25.0%
!!! ATTCTCTAGTTTGTTTTCTT+AGG + chr1_4:63672556-63672575 Msa0176980:intron 25.0%
! AGTAAAATGAAAGAAAGCAA+GGG - chr1_4:63672648-63672667 None:intergenic 25.0%
! GTTGAGATAAAATTGAAGAA+GGG - chr1_4:63672810-63672829 None:intergenic 25.0%
! AGTTGAGATAAAATTGAAGA+AGG - chr1_4:63672811-63672830 None:intergenic 25.0%
!!! TTTTCCTTTCTGAAGAAATA+CGG + chr1_4:63672860-63672879 Msa0176980:intron 25.0%
! AAAATAATTGTTGAACGAAG+AGG + chr1_4:63673227-63673246 Msa0176980:intron 25.0%
! AAATAATTGTTGAACGAAGA+GGG + chr1_4:63673228-63673247 Msa0176980:intron 25.0%
! AAATTTATCAAGCAAAGATG+TGG - chr1_4:63673427-63673446 None:intergenic 25.0%
! AAGAGAGATTTAAAAGTAGT+GGG - chr1_4:63673722-63673741 None:intergenic 25.0%
! TGTTTGGTTGAAAAGAAATA+AGG - chr1_4:63673819-63673838 None:intergenic 25.0%
!!! TTACATTTTATTTTAGACGG+AGG + chr1_4:63673942-63673961 Msa0176980:intron 25.0%
! ATTTCCGTAAAAAATTACGT+GGG + chr1_4:63674362-63674381 Msa0176980:intron 25.0%
!!! GAATTGCTTTGTTTTTATAG+AGG - chr1_4:63674412-63674431 None:intergenic 25.0%
!!! TTTTCCCTTTTATTGACTTA+TGG + chr1_4:63674985-63675004 Msa0176980:intron 25.0%
! ATCACCATAAGTCAATAAAA+GGG - chr1_4:63674992-63675011 None:intergenic 25.0%
! AATCACCATAAGTCAATAAA+AGG - chr1_4:63674993-63675012 None:intergenic 25.0%
!!! AATCATTTTTCGACATGAAT+TGG - chr1_4:63675191-63675210 None:intergenic 25.0%
! GAAAATTCCTTTACTTGAAT+TGG + chr1_4:63675361-63675380 Msa0176980:intron 25.0%
! TATTTATAGAAAGGGTAGTT+TGG + chr1_4:63675433-63675452 Msa0176980:intron 25.0%
! GGTTCATTATTTATTTAGGT+GGG - chr1_4:63675611-63675630 None:intergenic 25.0%
! AGGTTCATTATTTATTTAGG+TGG - chr1_4:63675612-63675631 None:intergenic 25.0%
! ATTAAAATGTCATTCACATG+TGG - chr1_4:63675805-63675824 None:intergenic 25.0%
! TCTTCATCTATTATTCTTAG+AGG - chr1_4:63676029-63676048 None:intergenic 25.0%
!! CTTGATTTTCTTTTTCTTCT+TGG - chr1_4:63676548-63676567 None:intergenic 25.0%
! CAAGAAGAAAAAGAAAATCA+AGG + chr1_4:63676546-63676565 Msa0176980:CDS 25.0%
! AATAGGATTAATAGAACAGA+AGG + chr1_4:63677032-63677051 Msa0176980:three_prime_UTR 25.0%
! ATTAATAGAACAGAAGGAAA+GGG + chr1_4:63677038-63677057 Msa0176980:three_prime_UTR 25.0%
!!! CTAGTTATTTTAGATCACTT+AGG + chr1_4:63677084-63677103 Msa0176980:three_prime_UTR 25.0%
!!! TTATTTTAGATCACTTAGGT+CGG + chr1_4:63677088-63677107 Msa0176980:three_prime_UTR 25.0%
AGAAGGTTTAAATGGTAAAG+GGG - chr1_4:63672343-63672362 None:intergenic 30.0%
GAAGAAGGTTTAAATGGTAA+AGG - chr1_4:63672345-63672364 None:intergenic 30.0%
AGTTATTTGAAAGAGGAAAG+AGG - chr1_4:63672373-63672392 None:intergenic 30.0%
GAGTAAAATGAAAGAAAGCA+AGG - chr1_4:63672649-63672668 None:intergenic 30.0%
! TTATCTCAACTTTCAAGTGT+TGG + chr1_4:63672820-63672839 Msa0176980:intron 30.0%
CTTCAGAAAGGAAAATTGAA+TGG - chr1_4:63672855-63672874 None:intergenic 30.0%
GAAATTGTGAAGAGAGAAAT+AGG + chr1_4:63672954-63672973 Msa0176980:intron 30.0%
! AGTAGATTTGATGTGTTGAT+TGG + chr1_4:63673017-63673036 Msa0176980:intron 30.0%
AAGAGAAAGATAGGAGAAAT+AGG + chr1_4:63673043-63673062 Msa0176980:intron 30.0%
AGAGAAAGATAGGAGAAATA+GGG + chr1_4:63673044-63673063 Msa0176980:intron 30.0%
ACAAAGGGAAAACAAAGTAA+AGG + chr1_4:63673317-63673336 Msa0176980:intron 30.0%
!! TTTTGAGAATTACAACTTGC+AGG + chr1_4:63673577-63673596 Msa0176980:intron 30.0%
TTTCAATACAAGGGCAAAAA+TGG + chr1_4:63673625-63673644 Msa0176980:intron 30.0%
TAGTGTGAGGAGAAATAAAA+AGG + chr1_4:63673688-63673707 Msa0176980:intron 30.0%
AGTGTGAGGAGAAATAAAAA+GGG + chr1_4:63673689-63673708 Msa0176980:intron 30.0%
GAAGAGAGATTTAAAAGTAG+TGG - chr1_4:63673723-63673742 None:intergenic 30.0%
!! CCATTTATTTTCAGTCTGTT+TGG - chr1_4:63673835-63673854 None:intergenic 30.0%
CCAAACAGACTGAAAATAAA+TGG + chr1_4:63673832-63673851 Msa0176980:intron 30.0%
CTGAAAATAAATGGAGAAAC+TGG + chr1_4:63673841-63673860 Msa0176980:intron 30.0%
!! TAAGTTAAGTTGATGTAGCT+GGG - chr1_4:63673896-63673915 None:intergenic 30.0%
!! ATAAGTTAAGTTGATGTAGC+TGG - chr1_4:63673897-63673916 None:intergenic 30.0%
CATTTCCGTAAAAAATTACG+TGG + chr1_4:63674361-63674380 Msa0176980:intron 30.0%
TTTCCGTAAAAAATTACGTG+GGG + chr1_4:63674363-63674382 Msa0176980:intron 30.0%
!!! TTATTTTTGGTCAAGTAGAG+TGG - chr1_4:63675288-63675307 None:intergenic 30.0%
ATGACTTCCAATTCAAGTAA+AGG - chr1_4:63675371-63675390 None:intergenic 30.0%
ATAATGAACCTTCAAATTGG+TGG + chr1_4:63675621-63675640 Msa0176980:intron 30.0%
AAGAATAAGAACTTGTGCTT+TGG - chr1_4:63675707-63675726 None:intergenic 30.0%
AAACAAAACATATGTGTGCA+TGG - chr1_4:63675880-63675899 None:intergenic 30.0%
TGATCAATAAATCGCATCAT+TGG - chr1_4:63675944-63675963 None:intergenic 30.0%
! ATTCTTAGAGGCTAGTTATA+TGG - chr1_4:63676017-63676036 None:intergenic 30.0%
AAATGAATCGTCCACAATAT+TGG - chr1_4:63676149-63676168 None:intergenic 30.0%
TTGGTTTCTTGACAATAATC+CGG - chr1_4:63676507-63676526 None:intergenic 30.0%
CTTGGAATACAACATTTGAA+GGG + chr1_4:63676879-63676898 Msa0176980:exon 30.0%
GATTAATAGAACAGAAGGAA+AGG + chr1_4:63677037-63677056 Msa0176980:three_prime_UTR 30.0%
AAAAAGAATTCCCATGGATA+TGG - chr1_4:63677156-63677175 None:intergenic 30.0%
TTGTTTCATTTCAATCACTC+TGG + chr1_4:63677239-63677258 Msa0176980:three_prime_UTR 30.0%
AAGGTTTAAATGGTAAAGGG+GGG - chr1_4:63672341-63672360 None:intergenic 35.0%
GAAGGTTTAAATGGTAAAGG+GGG - chr1_4:63672342-63672361 None:intergenic 35.0%
GAGAGTGAAGAAGGTTTAAA+TGG - chr1_4:63672351-63672370 None:intergenic 35.0%
TGGAGTGAGTTATTTGAAAG+AGG - chr1_4:63672380-63672399 None:intergenic 35.0%
TGAGAAGAGAATGGTAGAAA+AGG - chr1_4:63672448-63672467 None:intergenic 35.0%
AAAGAGTAGTGAGAAGAGAA+TGG - chr1_4:63672457-63672476 None:intergenic 35.0%
!! ACTAAGCTTAGTTTCAGGTT+TGG + chr1_4:63672504-63672523 Msa0176980:intron 35.0%
TTCATTAGTGAGTGTAGTGT+CGG + chr1_4:63672589-63672608 Msa0176980:intron 35.0%
! TTGATTCTAAAGGGTGTGTT+TGG + chr1_4:63672922-63672941 Msa0176980:intron 35.0%
! AAATAGGTGAGAGAGAGTAT+GGG + chr1_4:63672970-63672989 Msa0176980:intron 35.0%
GATTGGTACAAGAGAAAGAT+AGG + chr1_4:63673034-63673053 Msa0176980:intron 35.0%
! GTAAAAGAACTTAGAGGCAT+TGG - chr1_4:63673510-63673529 None:intergenic 35.0%
AAGAGAGAAGGCTCTTAATT+TGG - chr1_4:63673656-63673675 None:intergenic 35.0%
GTGTGAGGAGAAATAAAAAG+GGG + chr1_4:63673690-63673709 Msa0176980:intron 35.0%
TGTGAGGAGAAATAAAAAGG+GGG + chr1_4:63673691-63673710 Msa0176980:intron 35.0%
! GTTTGGAATGAAGAGAAACA+GGG - chr1_4:63673745-63673764 None:intergenic 35.0%
! AGTTTGGAATGAAGAGAAAC+AGG - chr1_4:63673746-63673765 None:intergenic 35.0%
GAAAGCAACTTTCTCTAGTT+TGG - chr1_4:63673762-63673781 None:intergenic 35.0%
AATAAGGAAGAGAGAAAGAG+AGG - chr1_4:63673803-63673822 None:intergenic 35.0%
AAGAAAAATATTGGGACCAG+CGG + chr1_4:63674021-63674040 Msa0176980:intron 35.0%
!!! TTGCCCCACGTAATTTTTTA+CGG - chr1_4:63674369-63674388 None:intergenic 35.0%
!! TTGACTTGCAGAGAAGAAAA+TGG + chr1_4:63674473-63674492 Msa0176980:intron 35.0%
TTAAGTAACTCTCTACTCAC+CGG - chr1_4:63674705-63674724 None:intergenic 35.0%
GTCATAATCAAGCAATCAGA+CGG - chr1_4:63674819-63674838 None:intergenic 35.0%
CATCATAATAGTTCCGTGTA+CGG + chr1_4:63674838-63674857 Msa0176980:intron 35.0%
AAAGCTACAAACAGACAATC+AGG - chr1_4:63674865-63674884 None:intergenic 35.0%
AACCATTCATGATGTTGCTA+GGG - chr1_4:63675021-63675040 None:intergenic 35.0%
AAACCATTCATGATGTTGCT+AGG - chr1_4:63675022-63675041 None:intergenic 35.0%
AGTGGCAATATGCAATTGAT+TGG - chr1_4:63675270-63675289 None:intergenic 35.0%
!!! GGTAGTTTGGTCATTTTTTC+AGG + chr1_4:63675446-63675465 Msa0176980:intron 35.0%
TTCAGGAAACTTGATTGTGT+CGG + chr1_4:63675463-63675482 Msa0176980:intron 35.0%
TAGATTGACCACCAATTTGA+AGG - chr1_4:63675632-63675651 None:intergenic 35.0%
! AAACAAACATGGGTTGTTAC+TGG - chr1_4:63675656-63675675 None:intergenic 35.0%
GTTCGAAGATCTTCTTTCAT+TGG + chr1_4:63676114-63676133 Msa0176980:intron 35.0%
AAGATCTTCTTTCATTGGAG+TGG + chr1_4:63676119-63676138 Msa0176980:CDS 35.0%
AGATCTTCTTTCATTGGAGT+GGG + chr1_4:63676120-63676139 Msa0176980:CDS 35.0%
! TTGAAAATTTTGCTGAGTCC+CGG + chr1_4:63676485-63676504 Msa0176980:CDS 35.0%
TGGTTTCTTGACAATAATCC+GGG - chr1_4:63676506-63676525 None:intergenic 35.0%
TATCCTTGCATCTCATTTCA+AGG - chr1_4:63676810-63676829 None:intergenic 35.0%
CCTTCAAATGTTGTATTCCA+AGG - chr1_4:63676881-63676900 None:intergenic 35.0%
CCTTGGAATACAACATTTGA+AGG + chr1_4:63676878-63676897 Msa0176980:CDS 35.0%
!!! TTGGTCATTGGTTTTTGTAC+AGG + chr1_4:63676995-63677014 Msa0176980:three_prime_UTR 35.0%
!!! TGGTCATTGGTTTTTGTACA+GGG + chr1_4:63676996-63677015 Msa0176980:three_prime_UTR 35.0%
AACTGCAAAAAGAATTCCCA+TGG - chr1_4:63677162-63677181 None:intergenic 35.0%
! TCTAAAGGGTGTGTTTGGTT+CGG + chr1_4:63672927-63672946 Msa0176980:intron 40.0%
GAAATAGGTGAGAGAGAGTA+TGG + chr1_4:63672969-63672988 Msa0176980:intron 40.0%
TATCAAGCAAAGATGTGGAG+TGG - chr1_4:63673422-63673441 None:intergenic 40.0%
CGAGAGAATTACCTCCAATT+TGG + chr1_4:63673481-63673500 Msa0176980:intron 40.0%
AGGAGAAATAAAAAGGGGGT+GGG + chr1_4:63673695-63673714 Msa0176980:intron 40.0%
!! TTAAGTTGATGTAGCTGGGA+CGG - chr1_4:63673892-63673911 None:intergenic 40.0%
AGCGGTGGCTAAAATACAAT+GGG + chr1_4:63674039-63674058 Msa0176980:intron 40.0%
GCAACGTAATTCATCCAATG+AGG - chr1_4:63674170-63674189 None:intergenic 40.0%
CAATAGTACTTCAGACCTCT+CGG + chr1_4:63674662-63674681 Msa0176980:CDS 40.0%
TTCCCTAGCAACATCATGAA+TGG + chr1_4:63675016-63675035 Msa0176980:intron 40.0%
! TGTGGACGATTCATTTTGTG+AGG + chr1_4:63676153-63676172 Msa0176980:CDS 40.0%
TCAAGGACAGAAATAGGACT+TGG - chr1_4:63676262-63676281 None:intergenic 40.0%
CTGCTTTCAAGGACAGAAAT+AGG - chr1_4:63676268-63676287 None:intergenic 40.0%
AAGAAACCAAAGCTCTCTTC+TGG + chr1_4:63676517-63676536 Msa0176980:CDS 40.0%
AGAATGGTTCACTACCTGTT+AGG + chr1_4:63676605-63676624 Msa0176980:CDS 40.0%
CAATGCATGCATTTCCTAAC+AGG - chr1_4:63676622-63676641 None:intergenic 40.0%
AGATAACCAAGACTCCACAA+TGG + chr1_4:63676644-63676663 Msa0176980:CDS 40.0%
!! CAAGCATTGCAGAGTGTTTT+TGG - chr1_4:63676688-63676707 None:intergenic 40.0%
AAAACACTCTGCAATGCTTG+CGG + chr1_4:63676688-63676707 Msa0176980:CDS 40.0%
! AAGGACCTTTTTGTGCGAAT+TGG - chr1_4:63676791-63676810 None:intergenic 40.0%
! TTTTTGTACAGGGCTGGAAT+GGG + chr1_4:63677006-63677025 Msa0176980:three_prime_UTR 40.0%
ACAGAAGGAAAGGGAAGAAA+AGG + chr1_4:63677047-63677066 Msa0176980:three_prime_UTR 40.0%
CAGAAGGAAAGGGAAGAAAA+GGG + chr1_4:63677048-63677067 Msa0176980:three_prime_UTR 40.0%
GAAGAAAAGGGTAGGATCTT+AGG + chr1_4:63677060-63677079 Msa0176980:three_prime_UTR 40.0%
TTTAGATCACTTAGGTCGGT+AGG + chr1_4:63677092-63677111 Msa0176980:three_prime_UTR 40.0%
GAGAGAGAGAGAGAATGTGA+TGG - chr1_4:63672299-63672318 None:intergenic 45.0%
TAAAGGGGGGTTATGAAGGA+AGG - chr1_4:63672328-63672347 None:intergenic 45.0%
ATGGTAAAGGGGGGTTATGA+AGG - chr1_4:63672332-63672351 None:intergenic 45.0%
AGGAAAGAGGAGAGTGAAGA+AGG - chr1_4:63672360-63672379 None:intergenic 45.0%
GCGACCGTATTTCTTCAGAA+AGG - chr1_4:63672867-63672886 None:intergenic 45.0%
!! AGAGGCATTGGTGTCCAAAT+TGG - chr1_4:63673498-63673517 None:intergenic 45.0%
GAGGAGAAATAAAAAGGGGG+TGG + chr1_4:63673694-63673713 Msa0176980:intron 45.0%
AAAAATATTGGGACCAGCGG+TGG + chr1_4:63674024-63674043 Msa0176980:intron 45.0%
!!! CATTGTATTTTAGCCACCGC+TGG - chr1_4:63674040-63674059 None:intergenic 45.0%
CAGCGGTGGCTAAAATACAA+TGG + chr1_4:63674038-63674057 Msa0176980:intron 45.0%
TCTATTTGGCGTGACCTCAT+TGG + chr1_4:63674153-63674172 Msa0176980:intron 45.0%
CTTGCAGAGAAGAAAATGGC+TGG + chr1_4:63674477-63674496 Msa0176980:intron 45.0%
AACACCGAGTCAGACTCATT+TGG - chr1_4:63674636-63674655 None:intergenic 45.0%
! GAGGTCTGAAGTACTATTGC+CGG - chr1_4:63674661-63674680 None:intergenic 45.0%
ACTATTTCCAGCCTGTCACA+CGG + chr1_4:63674885-63674904 Msa0176980:intron 45.0%
AACCACATAATCCGTGTGAC+AGG - chr1_4:63674899-63674918 None:intergenic 45.0%
! TTGATTGTGTCGGTGACATG+TGG + chr1_4:63675473-63675492 Msa0176980:intron 45.0%
CACCCTACTCTCCAATTTGA+GGG + chr1_4:63675507-63675526 Msa0176980:intron 45.0%
ACCCTACTCTCCAATTTGAG+GGG + chr1_4:63675508-63675527 Msa0176980:intron 45.0%
ACCCCTCAAATTGGAGAGTA+GGG - chr1_4:63675512-63675531 None:intergenic 45.0%
GGTGCGCTGTCTCAATTATT+TGG + chr1_4:63675529-63675548 Msa0176980:intron 45.0%
GGAGAGTCTCACAATGAAAG+TGG + chr1_4:63676174-63676193 Msa0176980:CDS 45.0%
! TTGCTGACAGCTGATGATGA+TGG - chr1_4:63676208-63676227 None:intergenic 45.0%
ATCATCATCAGCTGTCAGCA+AGG + chr1_4:63676207-63676226 Msa0176980:CDS 45.0%
AGTAGGGGAAATGAGTTGCA+TGG - chr1_4:63676401-63676420 None:intergenic 45.0%
CTCAACAGAAGAGGAAGTAG+GGG - chr1_4:63676416-63676435 None:intergenic 45.0%
CCTCAACAGAAGAGGAAGTA+GGG - chr1_4:63676417-63676436 None:intergenic 45.0%
TCCTCAACAGAAGAGGAAGT+AGG - chr1_4:63676418-63676437 None:intergenic 45.0%
CATGTTCTCCTCAACAGAAG+AGG - chr1_4:63676425-63676444 None:intergenic 45.0%
GCCTAATGTTATCTCGACCA+AGG + chr1_4:63676447-63676466 Msa0176980:CDS 45.0%
GCCTTGGTCGAGATAACATT+AGG - chr1_4:63676451-63676470 None:intergenic 45.0%
AAAATCTGAAGACAGCGCCT+TGG - chr1_4:63676467-63676486 None:intergenic 45.0%
TAACCAAGACTCCACAATGG+AGG + chr1_4:63676647-63676666 Msa0176980:CDS 45.0%
AACCAAGACTCCACAATGGA+GGG + chr1_4:63676648-63676667 Msa0176980:CDS 45.0%
GCACTCCAATTCGCACAAAA+AGG + chr1_4:63676783-63676802 Msa0176980:CDS 45.0%
GGTCCTTGAAATGAGATGCA+AGG + chr1_4:63676804-63676823 Msa0176980:CDS 45.0%
GTATTCCAAGGCGAGAACAT+TGG - chr1_4:63676869-63676888 None:intergenic 45.0%
GGAGAGAGAAATCTCCAACT+AGG - chr1_4:63676912-63676931 None:intergenic 45.0%
ATACGACGCGACTCTAGATA+AGG - chr1_4:63676938-63676957 None:intergenic 45.0%
!!! CATTGGTTTTTGTACAGGGC+TGG + chr1_4:63677000-63677019 Msa0176980:three_prime_UTR 45.0%
! GTTTTTGTACAGGGCTGGAA+TGG + chr1_4:63677005-63677024 Msa0176980:three_prime_UTR 45.0%
! TTTTGTACAGGGCTGGAATG+GGG + chr1_4:63677007-63677026 Msa0176980:three_prime_UTR 45.0%
AGGAAAGGGAAGAAAAGGGT+AGG + chr1_4:63677052-63677071 Msa0176980:three_prime_UTR 45.0%
!!! GGAGTCAGCGTCTTTTTTCT+TGG + chr1_4:63677113-63677132 Msa0176980:three_prime_UTR 45.0%
!!! AAAATTTAAATTAATTTTGA+AGG - chr1_4:63673124-63673143 None:intergenic 5.0%
!! ATAATATGAAATAAATAAAT+TGG + chr1_4:63673982-63674001 Msa0176980:intron 5.0%
!! TAATATGAAATAAATAAATT+GGG + chr1_4:63673983-63674002 Msa0176980:intron 5.0%
!!! TTATTTTTATTTTCTAAAAT+TGG + chr1_4:63675327-63675346 Msa0176980:intron 5.0%
GAGAGAGGGGAATAGTGTGT+TGG - chr1_4:63672400-63672419 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG - chr1_4:63672413-63672432 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr1_4:63672414-63672433 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr1_4:63672413-63672432 None:intergenic 50.0%
CAGTCTGAGAGTGGAAGACA+AGG - chr1_4:63673386-63673405 None:intergenic 50.0%
GCATTAGAGCAGTCTGAGAG+TGG - chr1_4:63673395-63673414 None:intergenic 50.0%
CAAGCAAAGATGTGGAGTGG+AGG - chr1_4:63673419-63673438 None:intergenic 50.0%
!! GGCATTGGTGTCCAAATTGG+AGG - chr1_4:63673495-63673514 None:intergenic 50.0%
GCGAAGAAAGGCAAGAGAGA+AGG - chr1_4:63673668-63673687 None:intergenic 50.0%
TGCCTTTCTTCGCTAGTGTG+AGG + chr1_4:63673675-63673694 Msa0176980:intron 50.0%
CTCCTCACACTAGCGAAGAA+AGG - chr1_4:63673680-63673699 None:intergenic 50.0%
! CAACGAGTTGTAGTTTGCCG+CGG - chr1_4:63674601-63674620 None:intergenic 50.0%
ACAACTCGTTGGCGAGTATC+TGG + chr1_4:63674610-63674629 Msa0176980:CDS 50.0%
CTGGCCAAATGAGTCTGACT+CGG + chr1_4:63674629-63674648 Msa0176980:CDS 50.0%
!!! GAGTCTGACTCGGTGTTTTC+CGG + chr1_4:63674639-63674658 Msa0176980:CDS 50.0%
TAGTACTTCAGACCTCTCGG+CGG + chr1_4:63674665-63674684 Msa0176980:CDS 50.0%
TCTCTACTCACCGGATCAAC+GGG - chr1_4:63674696-63674715 None:intergenic 50.0%
CTCTCTACTCACCGGATCAA+CGG - chr1_4:63674697-63674716 None:intergenic 50.0%
CAGACAATCAGGTCCGTACA+CGG - chr1_4:63674854-63674873 None:intergenic 50.0%
ACATAATCCGTGTGACAGGC+TGG - chr1_4:63674895-63674914 None:intergenic 50.0%
! AGCCTGTCACACGGATTATG+TGG + chr1_4:63674894-63674913 Msa0176980:intron 50.0%
CCTCAAATTGGAGAGTAGGG+TGG - chr1_4:63675509-63675528 None:intergenic 50.0%
CCACCCTACTCTCCAATTTG+AGG + chr1_4:63675506-63675525 Msa0176980:intron 50.0%
CACCCCTCAAATTGGAGAGT+AGG - chr1_4:63675513-63675532 None:intergenic 50.0%
GGAGTGGGTGTCCAATATTG+TGG + chr1_4:63676135-63676154 Msa0176980:CDS 50.0%
ATCATCAGCTGTCAGCAAGG+AGG + chr1_4:63676210-63676229 Msa0176980:CDS 50.0%
!! AGCAGGAACTGCTGCTTTCA+AGG - chr1_4:63676279-63676298 None:intergenic 50.0%
! TGTGGTTTTTCCACCAGAGC+AGG - chr1_4:63676296-63676315 None:intergenic 50.0%
TGCTCTGGTGGAAAAACCAC+AGG + chr1_4:63676295-63676314 Msa0176980:CDS 50.0%
GCTCTGGTGGAAAAACCACA+GGG + chr1_4:63676296-63676315 Msa0176980:CDS 50.0%
AACGAGGATTGAAGGCTGTG+GGG - chr1_4:63676375-63676394 None:intergenic 50.0%
GAACGAGGATTGAAGGCTGT+GGG - chr1_4:63676376-63676395 None:intergenic 50.0%
AGAACGAGGATTGAAGGCTG+TGG - chr1_4:63676377-63676396 None:intergenic 50.0%
CATGGCAGAACGAGGATTGA+AGG - chr1_4:63676383-63676402 None:intergenic 50.0%
ATGAGTTGCATGGCAGAACG+AGG - chr1_4:63676391-63676410 None:intergenic 50.0%
CCCTACTTCCTCTTCTGTTG+AGG + chr1_4:63676414-63676433 Msa0176980:CDS 50.0%
GTCTCTCCAGAAGAGAGCTT+TGG - chr1_4:63676526-63676545 None:intergenic 50.0%
!!! CAGAGTGTTTTTGGCCCCAT+TGG - chr1_4:63676679-63676698 None:intergenic 50.0%
TTGCGGTGTACGCTACAAGT+CGG + chr1_4:63676705-63676724 Msa0176980:CDS 50.0%
!! CAAAACGTTGGACTAGCAGC+AGG - chr1_4:63676754-63676773 None:intergenic 50.0%
TGCACAGCTGGACAAAACGT+TGG - chr1_4:63676766-63676785 None:intergenic 50.0%
AAGGCGAGAACATTGGCGTT+TGG - chr1_4:63676862-63676881 None:intergenic 50.0%
AAACGCCAATGTTCTCGCCT+TGG + chr1_4:63676861-63676880 Msa0176980:CDS 50.0%
TGAAGGGAACTGAGCCTAGT+TGG + chr1_4:63676895-63676914 Msa0176980:exon 50.0%
! AGCGGTGTCAACATCGTCGA+CGG - chr1_4:63674559-63674578 None:intergenic 55.0%
! TTGTAGTTTGCCGCGGAGGA+GGG - chr1_4:63674594-63674613 None:intergenic 55.0%
CGCGGCAAACTACAACTCGT+TGG + chr1_4:63674599-63674618 Msa0176980:CDS 55.0%
CTCTACTCACCGGATCAACG+GGG - chr1_4:63674695-63674714 None:intergenic 55.0%
AGACAGCGCACCCCTCAAAT+TGG - chr1_4:63675521-63675540 None:intergenic 55.0%
CTGTCAGCAAGGAGGACTCT+GGG + chr1_4:63676218-63676237 Msa0176980:CDS 55.0%
GAAAGCAGCAGTTCCTGCTC+TGG + chr1_4:63676280-63676299 Msa0176980:CDS 55.0%
GATGGGGACGTAAATCCCTG+TGG - chr1_4:63676314-63676333 None:intergenic 55.0%
TCAGCTGGAGCAGTAGGAAG+TGG - chr1_4:63676574-63676593 None:intergenic 55.0%
TTCTGTTCGCCACTGTCAGC+TGG - chr1_4:63676589-63676608 None:intergenic 55.0%
GCTGACAGTGGCGAACAGAA+TGG + chr1_4:63676589-63676608 Msa0176980:CDS 55.0%
TGCCCTCCATTGTGGAGTCT+TGG - chr1_4:63676653-63676672 None:intergenic 55.0%
AAGACTCCACAATGGAGGGC+AGG + chr1_4:63676652-63676671 Msa0176980:CDS 55.0%
ATTGGACCTGCCCTCCATTG+TGG - chr1_4:63676661-63676680 None:intergenic 55.0%
ACAATGGAGGGCAGGTCCAA+TGG + chr1_4:63676660-63676679 Msa0176980:CDS 55.0%
CAATGGAGGGCAGGTCCAAT+GGG + chr1_4:63676661-63676680 Msa0176980:CDS 55.0%
AATGGAGGGCAGGTCCAATG+GGG + chr1_4:63676662-63676681 Msa0176980:CDS 55.0%
TGCGGTGTACGCTACAAGTC+GGG + chr1_4:63676706-63676725 Msa0176980:CDS 55.0%
GCCGACTATTCCCCGAATAC+CGG + chr1_4:63676728-63676747 Msa0176980:CDS 55.0%
GCCGGTATTCGGGGAATAGT+CGG - chr1_4:63676732-63676751 None:intergenic 55.0%
ACTAGCAGCAGGCCGGTATT+CGG - chr1_4:63676743-63676762 None:intergenic 55.0%
TGCGAATTGGAGTGCACAGC+TGG - chr1_4:63676778-63676797 None:intergenic 55.0%
ACGCGACTCTAGATAAGGCG+AGG - chr1_4:63676933-63676952 None:intergenic 55.0%
AGGGCTGGAATGGGGAGAAT+AGG + chr1_4:63677015-63677034 Msa0176980:three_prime_UTR 55.0%
! CGGTGTCAACATCGTCGACG+GGG - chr1_4:63674557-63674576 None:intergenic 60.0%
! GCGGTGTCAACATCGTCGAC+GGG - chr1_4:63674558-63674577 None:intergenic 60.0%
! GTTGTAGTTTGCCGCGGAGG+AGG - chr1_4:63674595-63674614 None:intergenic 60.0%
! CGAGTTGTAGTTTGCCGCGG+AGG - chr1_4:63674598-63674617 None:intergenic 60.0%
GCTGTCAGCAAGGAGGACTC+TGG + chr1_4:63676217-63676236 Msa0176980:CDS 60.0%
AGCAGCAGTTCCTGCTCTGG+TGG + chr1_4:63676283-63676302 Msa0176980:CDS 60.0%
CCACTGTCAGCTGGAGCAGT+AGG - chr1_4:63676580-63676599 None:intergenic 60.0%
CCTACTGCTCCAGCTGACAG+TGG + chr1_4:63676577-63676596 Msa0176980:CDS 60.0%
TAGCAGCAGGCCGGTATTCG+GGG - chr1_4:63676741-63676760 None:intergenic 60.0%
CTAGCAGCAGGCCGGTATTC+GGG - chr1_4:63676742-63676761 None:intergenic 60.0%
!! ACGTTGGACTAGCAGCAGGC+CGG - chr1_4:63676750-63676769 None:intergenic 60.0%
GGAGGGCAATGAAGCGGCAG+CGG - chr1_4:63674577-63674596 None:intergenic 65.0%
CGCGGAGGAGGGCAATGAAG+CGG - chr1_4:63674583-63674602 None:intergenic 65.0%
CGCTTCATTGCCCTCCTCCG+CGG + chr1_4:63674581-63674600 Msa0176980:CDS 65.0%
TTGGAGCGTGCACGTCCGCA+AGG - chr1_4:63676343-63676362 None:intergenic 65.0%
GGATTGAAGGCTGTGGGGCG+TGG - chr1_4:63676370-63676389 None:intergenic 65.0%
GGCGGAGCTCCCCGTTGATC+CGG + chr1_4:63674683-63674702 Msa0176980:CDS 70.0%
GTCCCCATCCCCGTGCCTTG+CGG + chr1_4:63676325-63676344 Msa0176980:CDS 70.0%
GTCCGCAAGGCACGGGGATG+GGG - chr1_4:63676330-63676349 None:intergenic 70.0%
CGTCCGCAAGGCACGGGGAT+GGG - chr1_4:63676331-63676350 None:intergenic 70.0%
ACGTCCGCAAGGCACGGGGA+TGG - chr1_4:63676332-63676351 None:intergenic 70.0%
GTGCACGTCCGCAAGGCACG+GGG - chr1_4:63676336-63676355 None:intergenic 70.0%
CGTGCACGTCCGCAAGGCAC+GGG - chr1_4:63676337-63676356 None:intergenic 70.0%
GCGTGCACGTCCGCAAGGCA+CGG - chr1_4:63676338-63676357 None:intergenic 70.0%
CAACGGGGAGCTCCGCCGAG+AGG - chr1_4:63674680-63674699 None:intergenic 75.0%
GGCTGTGGGGCGTGGACGCT+TGG - chr1_4:63676362-63676381 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 63672295 63677271 63672295 ID=Msa0176980;Name=Msa0176980
chr1_4 mRNA 63672295 63677271 63672295 ID=Msa0176980-mRNA-1;Parent=Msa0176980;Name=Msa0176980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=289|1|1|1|0.33|0.25|4|374|331
chr1_4 exon 63672295 63672520 63672295 ID=Msa0176980-mRNA-1:exon:20616;Parent=Msa0176980-mRNA-1
chr1_4 exon 63672744 63672798 63672744 ID=Msa0176980-mRNA-1:exon:20617;Parent=Msa0176980-mRNA-1
chr1_4 exon 63674484 63674704 63674484 ID=Msa0176980-mRNA-1:exon:20618;Parent=Msa0176980-mRNA-1
chr1_4 exon 63676115 63677271 63676115 ID=Msa0176980-mRNA-1:exon:20619;Parent=Msa0176980-mRNA-1
chr1_4 five_prime_UTR 63672295 63672520 63672295 ID=Msa0176980-mRNA-1:five_prime_utr;Parent=Msa0176980-mRNA-1
chr1_4 five_prime_UTR 63672744 63672798 63672744 ID=Msa0176980-mRNA-1:five_prime_utr;Parent=Msa0176980-mRNA-1
chr1_4 five_prime_UTR 63674484 63674491 63674484 ID=Msa0176980-mRNA-1:five_prime_utr;Parent=Msa0176980-mRNA-1
chr1_4 CDS 63674492 63674704 63674492 ID=Msa0176980-mRNA-1:cds;Parent=Msa0176980-mRNA-1
chr1_4 CDS 63676115 63676897 63676115 ID=Msa0176980-mRNA-1:cds;Parent=Msa0176980-mRNA-1
chr1_4 three_prime_UTR 63676898 63677271 63676898 ID=Msa0176980-mRNA-1:three_prime_utr;Parent=Msa0176980-mRNA-1
Gene Sequence

>Msa0176980

ATGGCTGGAACAATGAACGAGATTGATTGCTTCAACTTATTTGACAACATTGATGACATTTACCCCGTCGACGATGTTGACACCGCTGCCGCTTCATTGCCCTCCTCCGCGGCAAACTACAACTCGTTGGCGAGTATCTGGCCAAATGAGTCTGACTCGGTGTTTTCCGGCAATAGTACTTCAGACCTCTCGGCGGAGCTCCCCGTTGATCCGTTCGAAGATCTTCTTTCATTGGAGTGGGTGTCCAATATTGTGGACGATTCATTTTGTGAGGAGAGTCTCACAATGAAAGTGGAGCAGCAGCCATCATCATCAGCTGTCAGCAAGGAGGACTCTGGGCATTATCAATTTCAGACACCAAGTCCTATTTCTGTCCTTGAAAGCAGCAGTTCCTGCTCTGGTGGAAAAACCACAGGGATTTACGTCCCCATCCCCGTGCCTTGCGGACGTGCACGCTCCAAGCGTCCACGCCCCACAGCCTTCAATCCTCGTTCTGCCATGCAACTCATTTCCCCTACTTCCTCTTCTGTTGAGGAGAACATGCAGCCTAATGTTATCTCGACCAAGGCGCTGTCTTCAGATTTTGAAAATTTTGCTGAGTCCCGGATTATTGTCAAGAAACCAAAGCTCTCTTCTGGAGAGACCAAGAAGAAAAAGAAAATCAAGGCACCACTTCCTACTGCTCCAGCTGACAGTGGCGAACAGAATGGTTCACTACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACTCCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTCTGCAATGCTTGCGGTGTACGCTACAAGTCGGGCCGACTATTCCCCGAATACCGGCCTGCTGCTAGTCCAACGTTTTGTCCAGCTGTGCACTCCAATTCGCACAAAAAGGTCCTTGAAATGAGATGCAAGGATAGTTTTGAATCAGATTCAGCTGAACTCATTCCAAACGCCAATGTTCTCGCCTTGGAATACAACATTTGA
Protein sequence

>Msa0176980

MAGTMNEIDCFNLFDNIDDIYPVDDVDTAAASLPSSAANYNSLASIWPNESDSVFSGNSTSDLSAELPVDPFEDLLSLEWVSNIVDDSFCEESLTMKVEQQPSSSAVSKEDSGHYQFQTPSPISVLESSSSCSGGKTTGIYVPIPVPCGRARSKRPRPTAFNPRSAMQLISPTSSSVEENMQPNVISTKALSSDFENFAESRIIVKKPKLSSGETKKKKKIKAPLPTAPADSGEQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRCKDSFESDSAELIPNANVLALEYNI*