AlfalfaGEDB | Msa0295960

M. sativa cultivar zhongmu-4 / Msa0295960

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295960	XP_013464768.1	99.170	843	7	0	1	843	1	843	0.0	1726

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295960	sp\|Q9LK35\|THE1_ARATH	73.740	853	207	10	6	843	5	855	0.0	1259

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295960	A0A072VBJ9	99.170	843	7	0	1	843	1	843	0.0	1726

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0216740	Msa0295960	0.991259	1.033965e-186	-8.615850e-47
Msa0242820	Msa0295960	0.804229	2.388226e-49	-8.615850e-47
Msa0287640	Msa0295960	0.817098	3.932928e-52	-8.615850e-47
Msa0287660	Msa0295960	0.812008	5.260841e-51	-8.615850e-47
Msa0295960	Msa0333950	0.979157	2.344704e-147	-8.615850e-47
Msa0295960	Msa0334060	0.978127	3.522634e-145	-8.615850e-47
Msa0295960	Msa0373030	0.813932	1.992997e-51	-8.615850e-47
Msa0295960	Msa0514460	0.822327	2.513461e-53	-8.615850e-47
Msa0295960	Msa0619010	0.824477	7.902598e-54	-8.615850e-47
Msa0295960	Msa0627580	0.810827	9.497422e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0295960	MtrunA17_Chr2g0318301	99.170	843	7	0	1	843	1	843	1726
Msa0295960	MtrunA17_Chr2g0327671	52.260	863	376	17	1	843	1	847	840
Msa0295960	MtrunA17_Chr4g0030441	52.700	852	367	17	8	843	9	840	833
Msa0295960	MtrunA17_Chr8g0352381	55.455	770	307	14	27	780	59	808	829
Msa0295960	MtrunA17_Chr8g0361611	51.259	794	314	14	3	785	1	732	741
Msa0295960	MtrunA17_Chr4g0061081	47.653	852	401	17	28	843	33	875	734
Msa0295960	MtrunA17_Chr1g0202711	48.317	832	375	18	27	843	41	832	729
Msa0295960	MtrunA17_Chr6g0468691	48.359	792	363	21	27	794	23	792	694
Msa0295960	MtrunA17_Chr2g0292501	45.695	871	431	17	4	843	1	860	687
Msa0295960	MtrunA17_Chr1g0165521	48.208	809	353	16	6	802	8	762	685

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0295960	AT5G54380.1	73.740	853	207	10	6	843	5	855	1259
Msa0295960	AT3G46290.1	53.069	831	351	16	27	843	25	830	830
Msa0295960	AT2G21480.1	53.581	782	336	15	25	793	49	816	824
Msa0295960	AT4G39110.1	53.716	767	327	15	27	780	52	803	808
Msa0295960	AT5G61350.1	53.523	809	325	18	27	796	28	824	804
Msa0295960	AT5G59700.1	52.159	857	359	23	6	843	5	829	795
Msa0295960	AT5G24010.1	47.759	848	393	18	13	843	10	824	722
Msa0295960	AT3G51550.1	45.268	877	419	17	22	843	25	895	691
Msa0295960	AT1G30570.1	45.420	797	400	14	9	780	12	798	683
Msa0295960	AT5G28680.1	43.628	871	431	22	14	843	7	858	661

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Find 193 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAACTCATCTTCCGCG+TGG	0.685983	2_3:-48820081	None:intergenic
AAAGCAACCGAACCATTTGA+AGG	0.498018	2_3:-48818059	None:intergenic
AAAGTGCAGCCGAACAAAAT+AGG	0.356461	2_3:-48818462	None:intergenic
AAATCAGATGTTTATTCATT+CGG	0.386535	2_3:+48819610	Msa0295960:CDS
AAATGCAACCATGAATGGAT+TGG	0.502206	2_3:+48818682	Msa0295960:CDS
AACAAGATAGGAATCATCAT+TGG	0.503039	2_3:+48818791	Msa0295960:CDS
AACAAGGTAGGCATTGGATT+AGG	0.419780	2_3:+48817859	Msa0295960:CDS
AACACTTTGACGGTAAGCGT+CGG	0.674991	2_3:+48818635	Msa0295960:CDS
AACAGCACGAACCACATTAC+TGG	0.378985	2_3:+48819934	Msa0295960:CDS
AACAGGTTAATATAGCCGAG+TGG	0.693103	2_3:+48819692	Msa0295960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTATCATGAGGTGTGTATA+AGG	-	chr2_3:48817640-48817659	None:intergenic	30.0%
TTATGTAAACTGTTTGGAAG+AGG	-	chr2_3:48817897-48817916	None:intergenic	30.0%
CGAACAAAATAGGAGAAATT+TGG	-	chr2_3:48818455-48818474	None:intergenic	30.0%
GTAAATACTGATATAGCGAT+TGG	+	chr2_3:48818533-48818552	Msa0295960:CDS	30.0%
AATCATTTGTCAAAGATGAG+AGG	-	chr2_3:48818568-48818587	None:intergenic	30.0%
CTCATCTTTGACAAATGATT+TGG	+	chr2_3:48818568-48818587	Msa0295960:CDS	30.0%
GAAACAAAGTCCTTATAGTA+AGG	-	chr2_3:48818599-48818618	None:intergenic	30.0%
ATTACAAATGCAACCATGAA+TGG	+	chr2_3:48818677-48818696	Msa0295960:CDS	30.0%
AACAAGATAGGAATCATCAT+TGG	+	chr2_3:48818791-48818810	Msa0295960:CDS	30.0%
ATAACATCTCGATTTCAGTT+CGG	-	chr2_3:48819195-48819214	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	48817564	48820095	48817564	ID=Msa0295960;Name=Msa0295960
chr2_3	mRNA	48817564	48820095	48817564	ID=Msa0295960-mRNA-1;Parent=Msa0295960;Name=Msa0295960-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|843
chr2_3	exon	48817564	48820095	48817564	ID=Msa0295960-mRNA-1:exon:15349;Parent=Msa0295960-mRNA-1
chr2_3	CDS	48817564	48820095	48817564	ID=Msa0295960-mRNA-1:cds;Parent=Msa0295960-mRNA-1

Gene Sequence

>Msa0295960

ATGGTGATGATGTTGAAGCTTGTTTTGGTTGTTGTTACTATTCTTATTGCATTTTTGGTGAATGTGTCATTTGCCTTATACACACCTCATGATAATTATCTAATTGCTTGTGGTTCATCCAAAAGTGTAAACTTTCAAGATCGTGTTTTTGTCCCTGATTCACAGCATTCTACATTAGTGTTGAAAACTGGAAATTCAGTTGTTGTTGGTAGTTCAAATTCAAGTGTTGTTCCATCTCCAATTTACCAATCAGCTAGGATTTTCACTGAGAGAAGTTCTTATAGATTTGATGTTCAACAAGGTAGGCATTGGATTAGGTTATATTTTTATCCTCTTCCAAACAGTTTACATAATTTGACTTCAGCTTCTGTAACAGTTGTTAGTGATGATTTTGTTCTATTAAGCAACTTCACTTTTAGAAACTATAGTGGTTCTTATATGTTTAGGGAGTATGCTATCAATGTAACCTCTGATATCTTGACTGTAACCTTCATTCCTTCAAATGGTTCGGTTGCTTTTGTGAATGCAATTGAAGTCGTGTCAATGCCAGACGATTTGTTTGTCGATCAGGCATTGGCACTTAGTCCATTGGCCCCTTTTAATGGTCTTTCCGAACTTGCTTTCGAAACTGTTTACCGTTTGAACATAGGAGGAGACTTGCTTACTGCCGAAAATGACACGTTGGGAAGGACTTGGGAGAATGATCAGAAGTACCTTCATGTGAACAGTTCGGTCACTAATGTGTCGGTCAGCCCTACAAGCATTAAGTATCGACCAGGCGTTACTGCTGAGACAGCACCTAATTGGGTCTATGCTACTGCGGAAGCAATGGGGGATGCAAATGTAGCCAATTCAAATTTCAACATAACTTGGGTTTTCCCTGTAGATCCAAATTTCTCCTATTTTGTTCGGCTGCACTTTTGCGATATTATTAGCATGGCGATGAACACATTAGTTTTCAATGTGTTTGTAAATACTGATATAGCGATTGGAAGCCTTGACCTCTCATCTTTGACAAATGATTTGGCTTTGCCTTACTATAAGGACTTTGTTTCCAATGCTACATCGGACAACACTTTGACGGTAAGCGTCGGTCCTGATACGATGGCAGACATTACAAATGCAACCATGAATGGATTGGAGATAATGAAAATCAGCAATGCATTGAAGAGCTTGGATGGACTTTCGTCGGTCAAGAGTTTGCTTCCCAGTTCAAAATCAAAAAAGAACAAGATAGGAATCATCATTGGCTCTGCTGCTGGTGCTGTTGTTGCCTTTGCTTTTGTTGGTTTGTGTGTTTGCTTGTTGGCGAGGAGAAAATCGAAGTCTTCTCCTCAAGAGGGTGGTCATTCATGGCTGCCATTGCCCTTATATGGAAATTCTCAAACAATTACAAAAATGTCGACAACTTCACAGAAGAGTGGAGGAACTGCAAGCTTCATTTCTTCGACGAATCTTGGACGGTTCTTCACTTTCCAAGAAATCCTAGACGCAACAAATAAATTTGATGAGAAGCTTCTTCTTGGTGTTGGTGGTTTCGGTAGGGTTTATAAGGGAATCCTCGATGACGGTACCAACGTAGCTGTTAAAAGGGGAAATCCAAGATCCGAACAAGGTCTTGCTGAATTCCGAACTGAAATCGAGATGTTATCAAAGCTTCGCCATCGTCATCTTGTGTCTCTAATTGGTTACTGTGATGAAAGGTCAGAAATGATTCTTGTCTATGAATACATGGCTAATGGTCCCCTCAGGAGTCATCTGTATGGAACAGATCTACCGCCTTTATCGTGGAAACAACGGCTTGATATTTGCATCGGAGCAGCAAGAGGTCTTCATTATCTCCACACCGGTGCATCTCAAAGTATAATTCACCGAGATGTAAAGACGACGAACATTCTTTTAGATGATAACTTTGTTGCTAAAGTTGCTGACTTTGGCCTCTCCAAAACTGGTCCTGCACTCGATCAGACTCATGTTAGCACAGCAGTTAAAGGTAGTTTCGGTTATCTTGATCCAGAATACTTTAGAAGGCAACAACTCACAGAGAAATCAGATGTTTATTCATTCGGAGTAGTTTTAATGGAAGTGCTATGCACAAGACCGGCGTTGAACCCTGTCCTTCCTAGAGAACAGGTTAATATAGCCGAGTGGGCGATGAACTGGCAGAAGAAGGGAATGCTTGATCAAATCATGGATCAACAGCTTGTCGGGAAGGTCAATCCTGCTTCGCTTAAGAAGTTCGGGGAGACCGCGGAGAAGTGCTTGGCGGAGTATGGAGTGGATAGGCCATCCATGGGAGATGTTTTATGGAATCTTGAATATGCTTTGCAGCTCCAAGAAACCTCGTCAGCACTGATGGAACCGGAAGACAACAGCACGAACCACATTACTGGAATTCAGTTGACACGTCTTGAGAATTTTGAGAACAGTGTGAGTATGGTTGATGGAGGCAACTCTGTCACAGACGATGACGCAGAAGACGCTGCTACAAGTGCAGTGTTCTCTCAATTGGTAAATCCACGCGGAAGATGA

Protein sequence

>Msa0295960

MVMMLKLVLVVVTILIAFLVNVSFALYTPHDNYLIACGSSKSVNFQDRVFVPDSQHSTLVLKTGNSVVVGSSNSSVVPSPIYQSARIFTERSSYRFDVQQGRHWIRLYFYPLPNSLHNLTSASVTVVSDDFVLLSNFTFRNYSGSYMFREYAINVTSDILTVTFIPSNGSVAFVNAIEVVSMPDDLFVDQALALSPLAPFNGLSELAFETVYRLNIGGDLLTAENDTLGRTWENDQKYLHVNSSVTNVSVSPTSIKYRPGVTAETAPNWVYATAEAMGDANVANSNFNITWVFPVDPNFSYFVRLHFCDIISMAMNTLVFNVFVNTDIAIGSLDLSSLTNDLALPYYKDFVSNATSDNTLTVSVGPDTMADITNATMNGLEIMKISNALKSLDGLSSVKSLLPSSKSKKNKIGIIIGSAAGAVVAFAFVGLCVCLLARRKSKSSPQEGGHSWLPLPLYGNSQTITKMSTTSQKSGGTASFISSTNLGRFFTFQEILDATNKFDEKLLLGVGGFGRVYKGILDDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGASQSIIHRDVKTTNILLDDNFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMNWQKKGMLDQIMDQQLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTRLENFENSVSMVDGGNSVTDDDAEDAATSAVFSQLVNPRGR*