AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0711960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711960 MtrunA17_Chr5g0396371 99.482 193 1 0 1 193 1 193 1.75e-142 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711960 AT1G51510.1 64.246 179 54 6 9 178 7 184 1.22e-73 221
Msa0711960 AT5G64200.2 32.353 102 68 1 79 180 5 105 2.75e-11 61.6
Msa0711960 AT5G64200.1 32.353 102 68 1 79 180 5 105 2.75e-11 61.6

Find 75 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAGTCTATTATGGTTTA+TGG 0.120038 5_1:+3809047 Msa0711960:three_prime_UTR
CACAAACCATTTATGTTGAT+TGG 0.221624 5_1:+3807775 Msa0711960:CDS
TATTAACTCAAAGTCTATTA+TGG 0.252809 5_1:+3809040 Msa0711960:three_prime_UTR
TATTGAAGGATGGATTATTT+TGG 0.283878 5_1:+3805378 Msa0711960:CDS
AACTCTCGTCTCGCTGATTC+CGG 0.283971 5_1:+3805220 Msa0711960:CDS
GAGGAAGATAGTATCTCTTT+TGG 0.289491 5_1:+3809149 Msa0711960:three_prime_UTR
GAAAGCCCAATCAACATAAA+TGG 0.296555 5_1:-3807781 None:intergenic
CGCCGCCGACGGAGAAGCTT+TGG 0.306556 5_1:+3805042 Msa0711960:CDS
TAATTCAAACGAATTGGAAT+TGG 0.314736 5_1:+3804950 Msa0711960:five_prime_UTR
AGTGATGGCGGATTTGAGTT+TGG 0.318147 5_1:-3805137 None:intergenic
GATGATTTGCAGAATGCTTT+TGG 0.361063 5_1:+3805430 Msa0711960:CDS
GTGATGGCGGATTTGAGTTT+GGG 0.363430 5_1:-3805136 None:intergenic
CTGACGGAAACCGCGACCTT+TGG 0.364553 5_1:-3805176 None:intergenic
CTTCTAACTGACTCATTGAT+AGG 0.375297 5_1:-3807813 None:intergenic
ACAAACCATTTATGTTGATT+GGG 0.381801 5_1:+3807776 Msa0711960:CDS
TCGTTGTAATTCAAACGAAT+TGG 0.383790 5_1:+3804944 Msa0711960:five_prime_UTR
GCAGACCTCAGCGGCGCTCC+AGG 0.401643 5_1:+3808825 Msa0711960:intron
AATTCAAACGAATTGGAATT+GGG 0.407430 5_1:+3804951 Msa0711960:five_prime_UTR
CTCACTGCTGAGGGTGGTCC+TGG 0.420911 5_1:+3805253 Msa0711960:CDS
AGAGAGGAGTGAGTGTATGA+AGG 0.429108 5_1:-3804997 None:intergenic
GCCAGAGGAAGATGACTTGA+TGG 0.429124 5_1:+3805072 Msa0711960:CDS
ATGAGTCAGTTAGAAGAAAC+AGG 0.431891 5_1:+3807820 Msa0711960:CDS
GAGACGAGAGTTACGGTTAG+AGG 0.454033 5_1:-3805209 None:intergenic
GCGGATTTGAGTTTGGGATG+TGG 0.456064 5_1:-3805130 None:intergenic
GAGAGGAGTGAGTGTATGAA+GGG 0.457187 5_1:-3804996 None:intergenic
CAAAGGTCGCGGTTTCCGTC+AGG 0.458944 5_1:+3805177 Msa0711960:CDS
GGATTGCGTCTTGTGTGTGA+TGG 0.470406 5_1:+3809170 Msa0711960:three_prime_UTR
TTGAATCTTGATCGCCGTAC+TGG 0.470728 5_1:+3805481 Msa0711960:CDS
TCTCCTCCTAGGAGGACTCC+TGG 0.475841 5_1:-3808843 None:intergenic
AGAGTTACGGTTAGAGGAAT+CGG 0.477329 5_1:-3805203 None:intergenic
TCCATCAAGTCATCTTCCTC+TGG 0.480725 5_1:-3805073 None:intergenic
CCGTCAGACAAAATACATAT+CGG 0.482615 5_1:+3808979 Msa0711960:three_prime_UTR
GTTGATTGGGCTTTCAGCAG+TGG 0.486700 5_1:+3807789 Msa0711960:CDS
GATTTCTGTTTGTCCAGTTG+TGG 0.497584 5_1:+3808929 Msa0711960:three_prime_UTR
AATGCAATAGAGAATTTGAA+TGG 0.500993 5_1:+3807738 Msa0711960:CDS
TGGGGATACGAACATCTTTG+AGG 0.513262 5_1:-3805277 None:intergenic
CTCTATTCAGCAACGATGCA+AGG 0.516755 5_1:+3805016 Msa0711960:exon
CCCTTTCAATATCTCCTCCT+AGG 0.518724 5_1:-3808854 None:intergenic
GGGATGTGGAGGAGAAGCTT+CGG 0.519462 5_1:-3805116 None:intergenic
GATTGCGTCTTGTGTGTGAT+GGG 0.524426 5_1:+3809171 Msa0711960:three_prime_UTR
AGCAGTGAGAGTATCGAAAC+CGG 0.528470 5_1:-3805239 None:intergenic
TTCGATACTCTCACTGCTGA+GGG 0.535196 5_1:+3805244 Msa0711960:CDS
TGTAAATACAATACAATACA+TGG 0.540737 5_1:-3809274 None:intergenic
GGGTAGTTCAATTCAACCTA+GGG 0.541693 5_1:-3804976 None:intergenic
GAATTGGAATTGGGAACCCT+AGG 0.543155 5_1:+3804960 Msa0711960:five_prime_UTR
TCCTAGGAGGAGATATTGAA+AGG 0.548743 5_1:+3808853 Msa0711960:exon
ATGCAAGGAAGCGCCGCCGA+CGG 0.551395 5_1:+3805031 Msa0711960:CDS
GGCGCTCCAGGAGTCCTCCT+AGG 0.551753 5_1:+3808837 Msa0711960:CDS
GGACTCCTGGAGCGCCGCTG+AGG 0.554772 5_1:-3808830 None:intergenic
AGGGTAGTTCAATTCAACCT+AGG 0.558714 5_1:-3804977 None:intergenic
AAAATACATATCGGTTGTTG+AGG 0.562247 5_1:+3808988 Msa0711960:three_prime_UTR
ATGAGCGCTCTGAGGAAGCT+CGG 0.562915 5_1:+3807715 Msa0711960:CDS
AATCAGCGAGACGAGAGTTA+CGG 0.563114 5_1:-3805216 None:intergenic
TACGAACATCTTTGAGGACC+AGG 0.563747 5_1:-3805271 None:intergenic
GATGACTTGATGGACGAAGA+AGG 0.572561 5_1:+3805082 Msa0711960:CDS
GATTTGAGTTTGGGATGTGG+AGG 0.573507 5_1:-3805127 None:intergenic
AGCTTTGGATTTCGAGCCAG+AGG 0.579650 5_1:+3805057 Msa0711960:CDS
GACGGAAGCTGCATAAGTAT+AGG 0.580468 5_1:-3808961 None:intergenic
ATCCAAAGCTTCTCCGTCGG+CGG 0.583085 5_1:-3805044 None:intergenic
CCTAGGAGGAGATATTGAAA+GGG 0.586913 5_1:+3808854 Msa0711960:exon
TTTCGATACTCTCACTGCTG+AGG 0.590321 5_1:+3805243 Msa0711960:CDS
TTTGGGAACGGAAGTGATGG+CGG 0.614347 5_1:-3805149 None:intergenic
GCTCCAGGAGTCCTCCTAGG+AGG 0.642226 5_1:+3808840 Msa0711960:CDS
TTTCAATATCTCCTCCTAGG+AGG 0.646524 5_1:-3808851 None:intergenic
GATACTCTCACTGCTGAGGG+TGG 0.647746 5_1:+3805247 Msa0711960:CDS
TATACATGATGTCAGTTGTG+TGG 0.649704 5_1:+3808888 Msa0711960:three_prime_UTR
TGCATCGTTGCTGAATAGAG+AGG 0.657759 5_1:-3805013 None:intergenic
GCACCTTAACAAAACCAGTA+CGG 0.658816 5_1:-3805495 None:intergenic
TTTGGTGACTGGTGTACATG+AGG 0.661358 5_1:+3805396 Msa0711960:CDS
GTAATGACTACATTGTGTTG+AGG 0.667089 5_1:+3809130 Msa0711960:three_prime_UTR
TAGAGGAATCGGAATCCTGA+CGG 0.677725 5_1:-3805192 None:intergenic
GATTGAATATGAGCGCTCTG+AGG 0.688874 5_1:+3807707 Msa0711960:CDS
GAAATCCAAAGCTTCTCCGT+CGG 0.701772 5_1:-3805047 None:intergenic
AAATACAATACAATACATGG+TGG 0.715878 5_1:-3809271 None:intergenic
TTGTGTGGAACTTAAATGAG+CGG 0.731925 5_1:+3808903 Msa0711960:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTTAATAAAATAAGATA+AGG - chr5_1:3807428-3807447 None:intergenic 10.0%
!!! TATCTTATTTTATTAAGAAA+AGG + chr5_1:3807428-3807447 Msa0711960:intron 10.0%
!! AATTGACAAAAATTGAAATT+GGG - chr5_1:3805299-3805318 None:intergenic 15.0%
!! AAATTGACAAAAATTGAAAT+TGG - chr5_1:3805300-3805319 None:intergenic 15.0%
!!! TACTTTTCATTCTTAAATTA+TGG + chr5_1:3805738-3805757 Msa0711960:intron 15.0%
!!! GCTTTGAAAAAAAAAAAAAA+AGG + chr5_1:3806201-3806220 Msa0711960:intron 15.0%
!! TGAAAAAAAAAAAAAAAGGA+AGG + chr5_1:3806205-3806224 Msa0711960:intron 15.0%
!! AAACTATGAAAAGTTTATAA+GGG - chr5_1:3808774-3808793 None:intergenic 15.0%
!! TAAACTATGAAAAGTTTATA+AGG - chr5_1:3808775-3808794 None:intergenic 15.0%
!! ATTGACAAAAATTGAAATTG+GGG - chr5_1:3805298-3805317 None:intergenic 20.0%
!!! TTTTGGAAGAAGAAAAAAAA+AGG - chr5_1:3806105-3806124 None:intergenic 20.0%
!! TTGAGAAATATATGGAAAAA+TGG - chr5_1:3806409-3806428 None:intergenic 20.0%
!! TTTATAGACAGTGTATATTA+CGG - chr5_1:3806599-3806618 None:intergenic 20.0%
!! TTTGAAAAAAAAATACTGCA+GGG - chr5_1:3807226-3807245 None:intergenic 20.0%
!! ATTTGAAAAAAAAATACTGC+AGG - chr5_1:3807227-3807246 None:intergenic 20.0%
!!! AATGCAGTTTTGATTTTTAA+AGG + chr5_1:3807272-3807291 Msa0711960:intron 20.0%
!!! TACTTGTAATTTTGTAAACA+GGG + chr5_1:3807471-3807490 Msa0711960:intron 20.0%
!!! TGATAAGCATTTTGATTTTA+GGG + chr5_1:3807675-3807694 Msa0711960:intron 20.0%
!!! AAGAAACAGGTAATTTATTT+TGG + chr5_1:3807833-3807852 Msa0711960:intron 20.0%
!!! TTGGTTTTATATTTATCTAC+AGG + chr5_1:3807852-3807871 Msa0711960:intron 20.0%
!!! TGGTTTTATATTTATCTACA+GGG + chr5_1:3807853-3807872 Msa0711960:intron 20.0%
!! TTTACATCATTTATTTGAGT+TGG + chr5_1:3807935-3807954 Msa0711960:intron 20.0%
!!! GCAAAAATAAATTTTACAGT+TGG - chr5_1:3808412-3808431 None:intergenic 20.0%
!! ATATATATAAAATGTGCAGT+AGG - chr5_1:3808473-3808492 None:intergenic 20.0%
!! AAGTTATTTAACGATAATCT+AGG - chr5_1:3808587-3808606 None:intergenic 20.0%
!! AACTATGAAAAGTTTATAAG+GGG - chr5_1:3808773-3808792 None:intergenic 20.0%
!! TATTAACTCAAAGTCTATTA+TGG + chr5_1:3809040-3809059 Msa0711960:three_prime_UTR 20.0%
!! TGTAAATACAATACAATACA+TGG - chr5_1:3809277-3809296 None:intergenic 20.0%
! TAATTCAAACGAATTGGAAT+TGG + chr5_1:3804950-3804969 Msa0711960:five_prime_UTR 25.0%
! AATTCAAACGAATTGGAATT+GGG + chr5_1:3804951-3804970 Msa0711960:five_prime_UTR 25.0%
!!! AATTGCGTGATTTTGATTTT+AGG + chr5_1:3805320-3805339 Msa0711960:intron 25.0%
!!! ATTGCGTGATTTTGATTTTA+GGG + chr5_1:3805321-3805340 Msa0711960:intron 25.0%
!!! TATTGAAGGATGGATTATTT+TGG + chr5_1:3805378-3805397 Msa0711960:CDS 25.0%
!!! GTATAGATTGACTAGTTTTA+TGG + chr5_1:3805596-3805615 Msa0711960:intron 25.0%
!! TTTGAAGTAGGAAATGTATA+TGG + chr5_1:3805654-3805673 Msa0711960:intron 25.0%
! GTGTATTAATCTATGTTGTT+GGG - chr5_1:3805887-3805906 None:intergenic 25.0%
! AGTGTATTAATCTATGTTGT+TGG - chr5_1:3805888-3805907 None:intergenic 25.0%
! AAACAAAACCCTCATAATTT+GGG - chr5_1:3806014-3806033 None:intergenic 25.0%
! AAAACAAAACCCTCATAATT+TGG - chr5_1:3806015-3806034 None:intergenic 25.0%
! TTACCATTAATCAATCACTT+AGG - chr5_1:3806446-3806465 None:intergenic 25.0%
! CAGAAGGTTAACAATAAAAA+AGG - chr5_1:3806484-3806503 None:intergenic 25.0%
!!! CTTTTTTATTGTTAACCTTC+TGG + chr5_1:3806482-3806501 Msa0711960:intron 25.0%
!! AAAATTTGATAACCATGATC+CGG - chr5_1:3806535-3806554 None:intergenic 25.0%
!! TGAATCAGAAGATCTATTTT+CGG + chr5_1:3806554-3806573 Msa0711960:intron 25.0%
! TCATGACTTGAATTATTTGA+AGG - chr5_1:3806687-3806706 None:intergenic 25.0%
! AATTCAAGTCATGAATCAAA+TGG + chr5_1:3806693-3806712 Msa0711960:intron 25.0%
! GTGTATCATTGTATCTATAT+GGG - chr5_1:3806839-3806858 None:intergenic 25.0%
! TGTGTATCATTGTATCTATA+TGG - chr5_1:3806840-3806859 None:intergenic 25.0%
!!! TTGATTTTTAAAGGATGTAG+TGG + chr5_1:3807281-3807300 Msa0711960:intron 25.0%
!! CTACTTGTAATTTTGTAAAC+AGG + chr5_1:3807470-3807489 Msa0711960:intron 25.0%
! CTAAATAAAGTTACAGGAAA+AGG - chr5_1:3807597-3807616 None:intergenic 25.0%
! AAGTTGCTAAATAAAGTTAC+AGG - chr5_1:3807603-3807622 None:intergenic 25.0%
! CAAATCTTCACATGATAAAA+TGG - chr5_1:3807645-3807664 None:intergenic 25.0%
!! CATTTTATCATGTGAAGATT+TGG + chr5_1:3807643-3807662 Msa0711960:intron 25.0%
!!! CTGATAAGCATTTTGATTTT+AGG + chr5_1:3807674-3807693 Msa0711960:intron 25.0%
! AATGCAATAGAGAATTTGAA+TGG + chr5_1:3807738-3807757 Msa0711960:CDS 25.0%
!! ACAAACCATTTATGTTGATT+GGG + chr5_1:3807776-3807795 Msa0711960:CDS 25.0%
! TGTGATAACAAATCATAATG+TGG - chr5_1:3808025-3808044 None:intergenic 25.0%
! AAATTCCATAGTAAGAAAAG+TGG - chr5_1:3808158-3808177 None:intergenic 25.0%
! ATAATTCTCTTCTTTGTAGA+TGG + chr5_1:3808533-3808552 Msa0711960:intron 25.0%
! TGGATTGAAAAATGAAGATA+TGG + chr5_1:3808553-3808572 Msa0711960:intron 25.0%
! AATCCATACATACAATGAAA+CGG - chr5_1:3808628-3808647 None:intergenic 25.0%
! TAGTTTAGCATTTGAATGTT+TGG + chr5_1:3808788-3808807 Msa0711960:intron 25.0%
! TCAAAGTCTATTATGGTTTA+TGG + chr5_1:3809047-3809066 Msa0711960:three_prime_UTR 25.0%
! AAATACAATACAATACATGG+TGG - chr5_1:3809274-3809293 None:intergenic 25.0%
TCGTTGTAATTCAAACGAAT+TGG + chr5_1:3804944-3804963 Msa0711960:five_prime_UTR 30.0%
! TTTTTGTAGCTATTGAAGGA+TGG + chr5_1:3805368-3805387 Msa0711960:intron 30.0%
!!! GATAGAAAGTGTTTTGAAGT+AGG + chr5_1:3805642-3805661 Msa0711960:intron 30.0%
AAGTAGGAAATGTATATGGA+CGG + chr5_1:3805658-3805677 Msa0711960:intron 30.0%
! TAATCTAAGGGTATGATTGT+AGG + chr5_1:3805688-3805707 Msa0711960:intron 30.0%
! AATCTAAGGGTATGATTGTA+GGG + chr5_1:3805689-3805708 Msa0711960:intron 30.0%
ATTAATCTATGTTGTTGGGA+GGG - chr5_1:3805883-3805902 None:intergenic 30.0%
TATTAATCTATGTTGTTGGG+AGG - chr5_1:3805884-3805903 None:intergenic 30.0%
AACAAAACCCTCATAATTTG+GGG - chr5_1:3806013-3806032 None:intergenic 30.0%
GGAAGAAGAAAAAAAAAGGA+AGG - chr5_1:3806101-3806120 None:intergenic 30.0%
TGGATGAAATAGAAGACATT+GGG + chr5_1:3806234-3806253 Msa0711960:intron 30.0%
TTGGGAGTTTGAGAAATATA+TGG - chr5_1:3806417-3806436 None:intergenic 30.0%
AAGCCTAAGTGATTGATTAA+TGG + chr5_1:3806440-3806459 Msa0711960:intron 30.0%
CGATTCTCATTTCATTCTAA+TGG - chr5_1:3806783-3806802 None:intergenic 30.0%
!! TGAGAATCGTTTTAGTGAAT+TGG + chr5_1:3806794-3806813 Msa0711960:intron 30.0%
!! GAGAATCGTTTTAGTGAATT+GGG + chr5_1:3806795-3806814 Msa0711960:intron 30.0%
ATGAGATGATAACTCAGTTA+AGG - chr5_1:3807031-3807050 None:intergenic 30.0%
TATGAACATAGAAACAGAGA+TGG - chr5_1:3807524-3807543 None:intergenic 30.0%
CACAAACCATTTATGTTGAT+TGG + chr5_1:3807775-3807794 Msa0711960:CDS 30.0%
! AACAAAGTTCCATGAAGTTT+TGG + chr5_1:3807905-3807924 Msa0711960:intron 30.0%
CAATGACTTGACTATAAACA+TGG - chr5_1:3808051-3808070 None:intergenic 30.0%
CATGTTTATAGTCAAGTCAT+TGG + chr5_1:3808049-3808068 Msa0711960:intron 30.0%
TATTTGCCAATAGTGTTTGT+TGG + chr5_1:3808091-3808110 Msa0711960:intron 30.0%
AGAAAAGTGGATGAGATAAA+AGG - chr5_1:3808145-3808164 None:intergenic 30.0%
! ATTCAACTACATAACTTGTG+TGG + chr5_1:3808383-3808402 Msa0711960:intron 30.0%
! GTTTTACAAACTTTCAAGAG+TGG - chr5_1:3808446-3808465 None:intergenic 30.0%
ATCCATACATACAATGAAAC+GGG - chr5_1:3808627-3808646 None:intergenic 30.0%
TTGTGAGTTTGTCAAAATCA+CGG - chr5_1:3808684-3808703 None:intergenic 30.0%
CTTAAACACAATTGCATGTT+TGG - chr5_1:3808720-3808739 None:intergenic 30.0%
AAAAGTTTATAAGGGGAAGA+AGG - chr5_1:3808766-3808785 None:intergenic 30.0%
! AAAATACATATCGGTTGTTG+AGG + chr5_1:3808988-3809007 Msa0711960:three_prime_UTR 30.0%
! GTTTCTTTTTCTCTGAATAG+AGG + chr5_1:3809220-3809239 Msa0711960:three_prime_UTR 30.0%
!!! ACCTTTGGTTTTTTTGGGAA+CGG - chr5_1:3805164-3805183 None:intergenic 35.0%
!!! GCTGTTTTTGTAGCTATTGA+AGG + chr5_1:3805364-3805383 Msa0711960:intron 35.0%
!! GATGATTTGCAGAATGCTTT+TGG + chr5_1:3805430-3805449 Msa0711960:CDS 35.0%
! CAGAATGCTTTTGGTGAATA+TGG + chr5_1:3805439-3805458 Msa0711960:CDS 35.0%
ACTAGTCAATCTATACGAGT+GGG - chr5_1:3805592-3805611 None:intergenic 35.0%
AACTAGTCAATCTATACGAG+TGG - chr5_1:3805593-3805612 None:intergenic 35.0%
AGTAGGAAATGTATATGGAC+GGG + chr5_1:3805659-3805678 Msa0711960:intron 35.0%
AAATGTATATGGACGGGTAA+TGG + chr5_1:3805665-3805684 Msa0711960:intron 35.0%
!!! TATGATTGTAGGGTTTTGGA+GGG + chr5_1:3805699-3805718 Msa0711960:intron 35.0%
TTAATCTATGTTGTTGGGAG+GGG - chr5_1:3805882-3805901 None:intergenic 35.0%
!!! TATTCGAGGAGAGTTTTGAA+GGG - chr5_1:3805976-3805995 None:intergenic 35.0%
GGAACTCAAAATTGTATTCG+AGG - chr5_1:3805990-3806009 None:intergenic 35.0%
ACAAAACCCTCATAATTTGG+GGG - chr5_1:3806012-3806031 None:intergenic 35.0%
AAAAAAAAGGAAGGAGCAAG+TGG - chr5_1:3806214-3806233 None:intergenic 35.0%
! TCTTTGTTTGGGAGTTTAGA+GGG - chr5_1:3806138-3806157 None:intergenic 35.0%
! CTAAGGCTTTGTCTTTGTTT+GGG - chr5_1:3806149-3806168 None:intergenic 35.0%
AAAAAAAAGGAAGGAGCAAG+TGG + chr5_1:3806214-3806233 Msa0711960:intron 35.0%
GTGGATGAAATAGAAGACAT+TGG + chr5_1:3806233-3806252 Msa0711960:intron 35.0%
ATGAAATAGAAGACATTGGG+AGG + chr5_1:3806237-3806256 Msa0711960:intron 35.0%
TGAAATAGAAGACATTGGGA+GGG + chr5_1:3806238-3806257 Msa0711960:intron 35.0%
AATACAAAATCCCCCTCATT+TGG + chr5_1:3806290-3806309 Msa0711960:intron 35.0%
ATACAAAATCCCCCTCATTT+GGG + chr5_1:3806291-3806310 Msa0711960:intron 35.0%
!! CAATCACTTAGGCTTTGTTT+GGG - chr5_1:3806435-3806454 None:intergenic 35.0%
!! TCAATCACTTAGGCTTTGTT+TGG - chr5_1:3806436-3806455 None:intergenic 35.0%
! AATATCAAGGTACCTTTCCT+CGG - chr5_1:3806512-3806531 None:intergenic 35.0%
! GAATTATAGCCAGCTTTTGT+CGG - chr5_1:3806741-3806760 None:intergenic 35.0%
TAGTGAATTGGGATTCAAGA+TGG + chr5_1:3806806-3806825 Msa0711960:intron 35.0%
AGTGAATTGGGATTCAAGAT+GGG + chr5_1:3806807-3806826 Msa0711960:intron 35.0%
ACAATGATACACACTAACTG+AGG + chr5_1:3806847-3806866 Msa0711960:intron 35.0%
ACACTAACTGAGGTTATTGA+TGG + chr5_1:3806857-3806876 Msa0711960:intron 35.0%
CACTAACTGAGGTTATTGAT+GGG + chr5_1:3806858-3806877 Msa0711960:intron 35.0%
AAACTCCACATCATGGTTAT+CGG - chr5_1:3806932-3806951 None:intergenic 35.0%
! CATATCTTTTCACCGTTAGT+TGG + chr5_1:3807048-3807067 Msa0711960:intron 35.0%
GGAAAGTTAAGTCCAACTAA+CGG - chr5_1:3807063-3807082 None:intergenic 35.0%
GAGATGGCAGAAAATTTACT+TGG - chr5_1:3807508-3807527 None:intergenic 35.0%
GAAAGCCCAATCAACATAAA+TGG - chr5_1:3807784-3807803 None:intergenic 35.0%
! CTTCTAACTGACTCATTGAT+AGG - chr5_1:3807816-3807835 None:intergenic 35.0%
ATGAGTCAGTTAGAAGAAAC+AGG + chr5_1:3807820-3807839 Msa0711960:CDS 35.0%
!!! AGTTCCATGAAGTTTTGGTT+TGG + chr5_1:3807910-3807929 Msa0711960:intron 35.0%
!!! GTTCCATGAAGTTTTGGTTT+GGG + chr5_1:3807911-3807930 Msa0711960:intron 35.0%
AAACCCAAACCAAAACTTCA+TGG - chr5_1:3807917-3807936 None:intergenic 35.0%
!! TGAGTCTTATTCCACAAAGT+GGG + chr5_1:3807980-3807999 Msa0711960:intron 35.0%
!! CTCATCCACTTTTCTTACTA+TGG + chr5_1:3808150-3808169 Msa0711960:intron 35.0%
AAATCTCGACTTAGATGGTT+TGG - chr5_1:3808202-3808221 None:intergenic 35.0%
TGATGAAATCTCGACTTAGA+TGG - chr5_1:3808207-3808226 None:intergenic 35.0%
TGATAGCATTAGAGAGAGTT+GGG - chr5_1:3808251-3808270 None:intergenic 35.0%
ATGATAGCATTAGAGAGAGT+TGG - chr5_1:3808252-3808271 None:intergenic 35.0%
ATGTGATGAGAATTGAGTGT+TGG - chr5_1:3808309-3808328 None:intergenic 35.0%
!! CATCTTCACTTAGTTTGTGT+TGG + chr5_1:3808326-3808345 Msa0711960:intron 35.0%
TCCATACATACAATGAAACG+GGG - chr5_1:3808626-3808645 None:intergenic 35.0%
CAATTGCATGTTTGGTAGAT+TGG - chr5_1:3808712-3808731 None:intergenic 35.0%
TATACATGATGTCAGTTGTG+TGG + chr5_1:3808888-3808907 Msa0711960:three_prime_UTR 35.0%
TTGTGTGGAACTTAAATGAG+CGG + chr5_1:3808903-3808922 Msa0711960:three_prime_UTR 35.0%
! CCGATATGTATTTTGTCTGA+CGG - chr5_1:3808982-3809001 None:intergenic 35.0%
CCGTCAGACAAAATACATAT+CGG + chr5_1:3808979-3808998 Msa0711960:three_prime_UTR 35.0%
GTAATGACTACATTGTGTTG+AGG + chr5_1:3809130-3809149 Msa0711960:three_prime_UTR 35.0%
! GAGGAAGATAGTATCTCTTT+TGG + chr5_1:3809149-3809168 Msa0711960:three_prime_UTR 35.0%
ATGGTGGCAAAGAAAAAGAT+GGG - chr5_1:3809258-3809277 None:intergenic 35.0%
GGGTAGTTCAATTCAACCTA+GGG - chr5_1:3804979-3804998 None:intergenic 40.0%
AGGGTAGTTCAATTCAACCT+AGG - chr5_1:3804980-3804999 None:intergenic 40.0%
!!! TTTTTTGGGAACGGAAGTGA+TGG - chr5_1:3805155-3805174 None:intergenic 40.0%
TCCGTTCCCAAAAAAACCAA+AGG + chr5_1:3805160-3805179 Msa0711960:CDS 40.0%
AGAGTTACGGTTAGAGGAAT+CGG - chr5_1:3805206-3805225 None:intergenic 40.0%
!!! GGATGGATTATTTTGGTGAC+TGG + chr5_1:3805385-3805404 Msa0711960:CDS 40.0%
GCACCTTAACAAAACCAGTA+CGG - chr5_1:3805498-3805517 None:intergenic 40.0%
! GACGGGTAATGGTAATCTAA+GGG + chr5_1:3805676-3805695 Msa0711960:intron 40.0%
! AGGGTATGATTGTAGGGTTT+TGG + chr5_1:3805695-3805714 Msa0711960:intron 40.0%
!! GTATGATTGTAGGGTTTTGG+AGG + chr5_1:3805698-3805717 Msa0711960:intron 40.0%
!!! ATGATTGTAGGGTTTTGGAG+GGG + chr5_1:3805700-3805719 Msa0711960:intron 40.0%
!!! GAGTTTTGAAGGGATTTGGA+AGG - chr5_1:3805966-3805985 None:intergenic 40.0%
!!! AGGAGAGTTTTGAAGGGATT+TGG - chr5_1:3805970-3805989 None:intergenic 40.0%
!! GTATTCGAGGAGAGTTTTGA+AGG - chr5_1:3805977-3805996 None:intergenic 40.0%
CAAAACCCTCATAATTTGGG+GGG - chr5_1:3806011-3806030 None:intergenic 40.0%
GAAATAGAGGAGTTTGAGAG+GGG - chr5_1:3806067-3806086 None:intergenic 40.0%
GGAAATAGAGGAGTTTGAGA+GGG - chr5_1:3806068-3806087 None:intergenic 40.0%
AGGAAATAGAGGAGTTTGAG+AGG - chr5_1:3806069-3806088 None:intergenic 40.0%
! GTCTTTGTTTGGGAGTTTAG+AGG - chr5_1:3806139-3806158 None:intergenic 40.0%
! CCTAAGGCTTTGTCTTTGTT+TGG - chr5_1:3806150-3806169 None:intergenic 40.0%
CCAAACAAAGACAAAGCCTT+AGG + chr5_1:3806147-3806166 Msa0711960:intron 40.0%
!! ACAAAGCCTTAGGCTTTGTT+TGG + chr5_1:3806157-3806176 Msa0711960:intron 40.0%
!! CAAAGCCTTAGGCTTTGTTT+GGG + chr5_1:3806158-3806177 Msa0711960:intron 40.0%
AAACTCCCAAACAAAGCCTA+AGG - chr5_1:3806427-3806446 None:intergenic 40.0%
!! GCTTTGTTTGGGAGTTTAGA+GGG + chr5_1:3806169-3806188 Msa0711960:intron 40.0%
GAAATAGAAGACATTGGGAG+GGG + chr5_1:3806239-3806258 Msa0711960:intron 40.0%
TACAAAATCCCCCTCATTTG+GGG + chr5_1:3806292-3806311 Msa0711960:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG - chr5_1:3806305-3806324 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG - chr5_1:3806306-3806325 None:intergenic 40.0%
! ATATCAAGGTACCTTTCCTC+GGG - chr5_1:3806511-3806530 None:intergenic 40.0%
!! GGAAAGGTACCTTGATATTC+CGG + chr5_1:3806513-3806532 Msa0711960:intron 40.0%
TACCTTGATATTCCGGATCA+TGG + chr5_1:3806520-3806539 Msa0711960:intron 40.0%
AACCATGATCCGGAATATCA+AGG - chr5_1:3806525-3806544 None:intergenic 40.0%
TCATGAATCAAATGGCAAGC+TGG + chr5_1:3806701-3806720 Msa0711960:intron 40.0%
AGATACCGATAACCATGATG+TGG + chr5_1:3806924-3806943 Msa0711960:intron 40.0%
CTCAATCAAACTCCACATCA+TGG - chr5_1:3806939-3806958 None:intergenic 40.0%
TGATGTGGAGTTTGATTGAG+AGG + chr5_1:3806939-3806958 Msa0711960:intron 40.0%
ATTGAGAGGTAGGTAAAGTG+AGG + chr5_1:3806953-3806972 Msa0711960:intron 40.0%
CAGTTAAGGTTGCATCAATC+AGG - chr5_1:3807017-3807036 None:intergenic 40.0%
TCCATTTCATGTCTCAGTCA+TGG + chr5_1:3807080-3807099 Msa0711960:intron 40.0%
! TTGACCTCAAGCTGTTACTT+TGG + chr5_1:3807136-3807155 Msa0711960:intron 40.0%
!! TGACCTCAAGCTGTTACTTT+GGG + chr5_1:3807137-3807156 Msa0711960:intron 40.0%
! CACACAGTTACTTGTTAGGA+AGG - chr5_1:3807321-3807340 None:intergenic 40.0%
CCTACACACAGTTACTTGTT+AGG - chr5_1:3807325-3807344 None:intergenic 40.0%
CCTAACAAGTAACTGTGTGT+AGG + chr5_1:3807322-3807341 Msa0711960:intron 40.0%
CAGTTTCAGAAACTGCAGAT+TGG + chr5_1:3807567-3807586 Msa0711960:intron 40.0%
GACTCAGTAGTTGCTGTAAT+AGG - chr5_1:3807966-3807985 None:intergenic 40.0%
!! CTGAGTCTTATTCCACAAAG+TGG + chr5_1:3807979-3807998 Msa0711960:intron 40.0%
!! GAGTCTTATTCCACAAAGTG+GGG + chr5_1:3807981-3808000 Msa0711960:intron 40.0%
TTCCATTGCCTTTCGCAATT+CGG + chr5_1:3808116-3808135 Msa0711960:intron 40.0%
! TTAGATGGTTTGGACATGTG+TGG - chr5_1:3808192-3808211 None:intergenic 40.0%
ACGTGTGGAAAGACTAGAAA+GGG - chr5_1:3808286-3808305 None:intergenic 40.0%
!! TTCTTCGTCGTTTTCTACGA+TGG + chr5_1:3808351-3808370 Msa0711960:intron 40.0%
TTCAAGAGTGGAGTATGTGT+TGG - chr5_1:3808434-3808453 None:intergenic 40.0%
AATGAAACGGGGTTGAAAGA+TGG - chr5_1:3808615-3808634 None:intergenic 40.0%
ACCCCGTTTCATTGTATGTA+TGG + chr5_1:3808622-3808641 Msa0711960:intron 40.0%
TTTCAATATCTCCTCCTAGG+AGG - chr5_1:3808854-3808873 None:intergenic 40.0%
TCCTAGGAGGAGATATTGAA+AGG + chr5_1:3808853-3808872 Msa0711960:exon 40.0%
CCTAGGAGGAGATATTGAAA+GGG + chr5_1:3808854-3808873 Msa0711960:exon 40.0%
GATTTCTGTTTGTCCAGTTG+TGG + chr5_1:3808929-3808948 Msa0711960:three_prime_UTR 40.0%
!! TAGGAAAAAGCATCCACAAC+TGG - chr5_1:3808945-3808964 None:intergenic 40.0%
CATGGTGGCAAAGAAAAAGA+TGG - chr5_1:3809259-3809278 None:intergenic 40.0%
GAATTGGAATTGGGAACCCT+AGG + chr5_1:3804960-3804979 Msa0711960:five_prime_UTR 45.0%
GAGAGGAGTGAGTGTATGAA+GGG - chr5_1:3804999-3805018 None:intergenic 45.0%
AGAGAGGAGTGAGTGTATGA+AGG - chr5_1:3805000-3805019 None:intergenic 45.0%
TGCATCGTTGCTGAATAGAG+AGG - chr5_1:3805016-3805035 None:intergenic 45.0%
CTCTATTCAGCAACGATGCA+AGG + chr5_1:3805016-3805035 Msa0711960:exon 45.0%
GAAATCCAAAGCTTCTCCGT+CGG - chr5_1:3805050-3805069 None:intergenic 45.0%
TCCATCAAGTCATCTTCCTC+TGG - chr5_1:3805076-3805095 None:intergenic 45.0%
! GATGACTTGATGGACGAAGA+AGG + chr5_1:3805082-3805101 Msa0711960:CDS 45.0%
! GATTTGAGTTTGGGATGTGG+AGG - chr5_1:3805130-3805149 None:intergenic 45.0%
!! GTGATGGCGGATTTGAGTTT+GGG - chr5_1:3805139-3805158 None:intergenic 45.0%
!! AGTGATGGCGGATTTGAGTT+TGG - chr5_1:3805140-3805159 None:intergenic 45.0%
!!! CCGCGACCTTTGGTTTTTTT+GGG - chr5_1:3805169-3805188 None:intergenic 45.0%
CCCAAAAAAACCAAAGGTCG+CGG + chr5_1:3805166-3805185 Msa0711960:CDS 45.0%
!!! ACCGCGACCTTTGGTTTTTT+TGG - chr5_1:3805170-3805189 None:intergenic 45.0%
TAGAGGAATCGGAATCCTGA+CGG - chr5_1:3805195-3805214 None:intergenic 45.0%
AATCAGCGAGACGAGAGTTA+CGG - chr5_1:3805219-3805238 None:intergenic 45.0%
!! AGCAGTGAGAGTATCGAAAC+CGG - chr5_1:3805242-3805261 None:intergenic 45.0%
TTTCGATACTCTCACTGCTG+AGG + chr5_1:3805243-3805262 Msa0711960:CDS 45.0%
TTCGATACTCTCACTGCTGA+GGG + chr5_1:3805244-3805263 Msa0711960:CDS 45.0%
! TACGAACATCTTTGAGGACC+AGG - chr5_1:3805274-3805293 None:intergenic 45.0%
TGGGGATACGAACATCTTTG+AGG - chr5_1:3805280-3805299 None:intergenic 45.0%
! TTTGGTGACTGGTGTACATG+AGG + chr5_1:3805396-3805415 Msa0711960:CDS 45.0%
TTGAATCTTGATCGCCGTAC+TGG + chr5_1:3805481-3805500 Msa0711960:CDS 45.0%
!!! TCGCCGTACTGGTTTTGTTA+AGG + chr5_1:3805492-3805511 Msa0711960:CDS 45.0%
! GGACGGGTAATGGTAATCTA+AGG + chr5_1:3805675-3805694 Msa0711960:intron 45.0%
! TATGTTGTTGGGAGGGGTTT+TGG - chr5_1:3805876-3805895 None:intergenic 45.0%
TGAGTTCCCCCCAAATTATG+AGG + chr5_1:3806002-3806021 Msa0711960:intron 45.0%
GAGTTCCCCCCAAATTATGA+GGG + chr5_1:3806003-3806022 Msa0711960:intron 45.0%
AAAAAGGAAGGAGCAAGTGG+AGG - chr5_1:3806217-3806236 None:intergenic 45.0%
TTTGGGAGTTTAGAGGGCAA+GGG - chr5_1:3806132-3806151 None:intergenic 45.0%
!! GGCTTTGTTTGGGAGTTTAG+AGG + chr5_1:3806168-3806187 Msa0711960:intron 45.0%
GGAGTTTAGAGGGAAGTGAA+GGG + chr5_1:3806179-3806198 Msa0711960:intron 45.0%
ACAAAATCCCCCTCATTTGG+GGG + chr5_1:3806293-3806312 Msa0711960:intron 45.0%
! TTTGAGTTCCCCCAAATGAG+GGG - chr5_1:3806304-3806323 None:intergenic 45.0%
CAATGTTGACCGACAAAAGC+TGG + chr5_1:3806729-3806748 Msa0711960:intron 45.0%
GTGGAGTTTGATTGAGAGGT+AGG + chr5_1:3806943-3806962 Msa0711960:intron 45.0%
TCCCATGCTGGAACAATCTT+CGG - chr5_1:3806979-3806998 None:intergenic 45.0%
TTCCAGCATGGGATCTAACT+TGG + chr5_1:3806986-3807005 Msa0711960:intron 45.0%
TCCAGCATGGGATCTAACTT+GGG + chr5_1:3806987-3807006 Msa0711960:intron 45.0%
GCCATGACTGAGACATGAAA+TGG - chr5_1:3807084-3807103 None:intergenic 45.0%
!! GACCTCAAGCTGTTACTTTG+GGG + chr5_1:3807138-3807157 Msa0711960:intron 45.0%
AACCCCAAAGTAACAGCTTG+AGG - chr5_1:3807143-3807162 None:intergenic 45.0%
!! CTGTTACTTTGGGGTTCAGA+TGG + chr5_1:3807147-3807166 Msa0711960:intron 45.0%
TGAGATCAAAGCAGCGAAAG+TGG - chr5_1:3807405-3807424 None:intergenic 45.0%
GATTGAATATGAGCGCTCTG+AGG + chr5_1:3807707-3807726 Msa0711960:CDS 45.0%
CTTATTCCACAAAGTGGGGT+TGG + chr5_1:3807985-3808004 Msa0711960:intron 45.0%
GGAAGGCCAACAAACACTAT+TGG - chr5_1:3808100-3808119 None:intergenic 45.0%
GAATTGCGAAAGGCAATGGA+AGG - chr5_1:3808117-3808136 None:intergenic 45.0%
AACCGAATTGCGAAAGGCAA+TGG - chr5_1:3808121-3808140 None:intergenic 45.0%
AAAGGCAACCGAATTGCGAA+AGG - chr5_1:3808127-3808146 None:intergenic 45.0%
CATTAGAGAGAGTTGGGTAG+AGG - chr5_1:3808245-3808264 None:intergenic 45.0%
GTGGAAAGACTAGAAAGGGT+AGG - chr5_1:3808282-3808301 None:intergenic 45.0%
GACGTGTGGAAAGACTAGAA+AGG - chr5_1:3808287-3808306 None:intergenic 45.0%
!! AGAATTGAGTGTTGGACGTG+TGG - chr5_1:3808301-3808320 None:intergenic 45.0%
! TGACATTTTGCAGACCTCAG+CGG + chr5_1:3808816-3808835 Msa0711960:intron 45.0%
CCCTTTCAATATCTCCTCCT+AGG - chr5_1:3808857-3808876 None:intergenic 45.0%
GACGGAAGCTGCATAAGTAT+AGG - chr5_1:3808964-3808983 None:intergenic 45.0%
GATTGCGTCTTGTGTGTGAT+GGG + chr5_1:3809171-3809190 Msa0711960:three_prime_UTR 45.0%
GTGGCAAAGAAAAAGATGGG+AGG - chr5_1:3809255-3809274 None:intergenic 45.0%
!!! TGTATATAAATTTTATAAAA+TGG + chr5_1:3807188-3807207 Msa0711960:intron 5.0%
!! AATATTTAAAAAATATTTAG+AGG - chr5_1:3808075-3808094 None:intergenic 5.0%
!! AGCTTTGGATTTCGAGCCAG+AGG + chr5_1:3805057-3805076 Msa0711960:CDS 50.0%
GCCAGAGGAAGATGACTTGA+TGG + chr5_1:3805072-3805091 Msa0711960:CDS 50.0%
! GCGGATTTGAGTTTGGGATG+TGG - chr5_1:3805133-3805152 None:intergenic 50.0%
TTTGGGAACGGAAGTGATGG+CGG - chr5_1:3805152-3805171 None:intergenic 50.0%
GAGACGAGAGTTACGGTTAG+AGG - chr5_1:3805212-3805231 None:intergenic 50.0%
!! AACTCTCGTCTCGCTGATTC+CGG + chr5_1:3805220-3805239 Msa0711960:CDS 50.0%
!!! ATTGTAGGGTTTTGGAGGGG+AGG + chr5_1:3805703-3805722 Msa0711960:intron 50.0%
!!! TTGTAGGGTTTTGGAGGGGA+GGG + chr5_1:3805704-3805723 Msa0711960:intron 50.0%
TAGAGGAGTTTGAGAGGGGA+GGG - chr5_1:3806063-3806082 None:intergenic 50.0%
ATAGAGGAGTTTGAGAGGGG+AGG - chr5_1:3806064-3806083 None:intergenic 50.0%
GGAGCAAGTGGAGGAAATAG+AGG - chr5_1:3806080-3806099 None:intergenic 50.0%
GTTTGGGAGTTTAGAGGGCA+AGG - chr5_1:3806133-3806152 None:intergenic 50.0%
GGGAGTTTAGAGGGAAGTGA+AGG + chr5_1:3806178-3806197 Msa0711960:intron 50.0%
ATAGAAGACATTGGGAGGGG+AGG + chr5_1:3806242-3806261 Msa0711960:intron 50.0%
TAGAAGACATTGGGAGGGGA+GGG + chr5_1:3806243-3806262 Msa0711960:intron 50.0%
TTGAGTTCCCCCAAATGAGG+GGG - chr5_1:3806303-3806322 None:intergenic 50.0%
!! GTTAACCTTCTGGTTTCCCG+AGG + chr5_1:3806492-3806511 Msa0711960:intron 50.0%
GCCGAAGATTGTTCCAGCAT+GGG + chr5_1:3806975-3806994 Msa0711960:intron 50.0%
ACCCAAGTTAGATCCCATGC+TGG - chr5_1:3806991-3807010 None:intergenic 50.0%
GTTGATTGGGCTTTCAGCAG+TGG + chr5_1:3807789-3807808 Msa0711960:CDS 50.0%
ATGTAGCCAACCCCACTTTG+TGG - chr5_1:3807994-3808013 None:intergenic 50.0%
!! ACAAAGTGGGGTTGGCTACA+TGG + chr5_1:3807993-3808012 Msa0711960:intron 50.0%
! GATGGTTTGGACATGTGTGG+AGG - chr5_1:3808189-3808208 None:intergenic 50.0%
GGATTGCGTCTTGTGTGTGA+TGG + chr5_1:3809170-3809189 Msa0711960:three_prime_UTR 50.0%
ATCCAAAGCTTCTCCGTCGG+CGG - chr5_1:3805047-3805066 None:intergenic 55.0%
GGGATGTGGAGGAGAAGCTT+CGG - chr5_1:3805119-3805138 None:intergenic 55.0%
GATACTCTCACTGCTGAGGG+TGG + chr5_1:3805247-3805266 Msa0711960:CDS 55.0%
!!! TGTAGGGTTTTGGAGGGGAG+GGG + chr5_1:3805705-3805724 Msa0711960:intron 55.0%
!! GTTGTTGGGAGGGGTTTTGG+AGG - chr5_1:3805873-3805892 None:intergenic 55.0%
TTTGAGAGGGGAGGGCTTTG+GGG - chr5_1:3806055-3806074 None:intergenic 55.0%
GTTTGAGAGGGGAGGGCTTT+GGG - chr5_1:3806056-3806075 None:intergenic 55.0%
AGTTTGAGAGGGGAGGGCTT+TGG - chr5_1:3806057-3806076 None:intergenic 55.0%
! TAGAGGGCAAGGGAGGGTTT+TGG - chr5_1:3806122-3806141 None:intergenic 55.0%
GGAGTTTAGAGGGCAAGGGA+GGG - chr5_1:3806128-3806147 None:intergenic 55.0%
! ATTGGGAGGGGAGGGCTTTT+GGG + chr5_1:3806251-3806270 Msa0711960:intron 55.0%
CCTTTCCTCGGGAAACCAGA+AGG - chr5_1:3806500-3806519 None:intergenic 55.0%
!! CCTTCTGGTTTCCCGAGGAA+AGG + chr5_1:3806497-3806516 Msa0711960:intron 55.0%
GGCCGAAGATTGTTCCAGCA+TGG + chr5_1:3806974-3806993 Msa0711960:intron 55.0%
! ATACTGCAGGGAGTGCAGTG+AGG - chr5_1:3807214-3807233 None:intergenic 55.0%
!! ATGAGCGCTCTGAGGAAGCT+CGG + chr5_1:3807715-3807734 Msa0711960:CDS 55.0%
CTGACGGAAACCGCGACCTT+TGG - chr5_1:3805179-3805198 None:intergenic 60.0%
CAAAGGTCGCGGTTTCCGTC+AGG + chr5_1:3805177-3805196 Msa0711960:CDS 60.0%
!!! GTAGGGTTTTGGAGGGGAGG+GGG + chr5_1:3805706-3805725 Msa0711960:intron 60.0%
! TTGAGAGGGGAGGGCTTTGG+GGG - chr5_1:3806054-3806073 None:intergenic 60.0%
GGGAGTTTAGAGGGCAAGGG+AGG - chr5_1:3806129-3806148 None:intergenic 60.0%
! CATTGGGAGGGGAGGGCTTT+TGG + chr5_1:3806250-3806269 Msa0711960:intron 60.0%
! TTGGGAGGGGAGGGCTTTTG+GGG + chr5_1:3806252-3806271 Msa0711960:intron 60.0%
TCTCCTCCTAGGAGGACTCC+TGG - chr5_1:3808846-3808865 None:intergenic 60.0%
!! ATGCAAGGAAGCGCCGCCGA+CGG + chr5_1:3805031-3805050 Msa0711960:CDS 65.0%
CTCACTGCTGAGGGTGGTCC+TGG + chr5_1:3805253-3805272 Msa0711960:CDS 65.0%
!! TTTTGGAGGGGAGGGGGTGG+AGG + chr5_1:3805712-3805731 Msa0711960:intron 65.0%
!! TGAGAGGGGAGGGCTTTGGG+GGG - chr5_1:3806053-3806072 None:intergenic 65.0%
GCTCCAGGAGTCCTCCTAGG+AGG + chr5_1:3808840-3808859 Msa0711960:CDS 65.0%
CGCCGCCGACGGAGAAGCTT+TGG + chr5_1:3805042-3805061 Msa0711960:CDS 70.0%
!!! GGGTTTTGGAGGGGAGGGGG+TGG + chr5_1:3805709-3805728 Msa0711960:intron 70.0%
GGCGCTCCAGGAGTCCTCCT+AGG + chr5_1:3808837-3808856 Msa0711960:CDS 70.0%
GCAGACCTCAGCGGCGCTCC+AGG + chr5_1:3808825-3808844 Msa0711960:intron 75.0%
!! GGACTCCTGGAGCGCCGCTG+AGG - chr5_1:3808833-3808852 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 3804867 3809319 3804867 ID=Msa0711960;Name=Msa0711960
chr5_1 mRNA 3804867 3809319 3804867 ID=Msa0711960-mRNA-1;Parent=Msa0711960;Name=Msa0711960-mRNA-1;_AED=0.04;_eAED=0.04;_QI=164|1|1|1|1|1|4|448|193
chr5_1 exon 3804867 3805286 3804867 ID=Msa0711960-mRNA-1:exon:1439;Parent=Msa0711960-mRNA-1
chr5_1 exon 3805377 3805513 3805377 ID=Msa0711960-mRNA-1:exon:1440;Parent=Msa0711960-mRNA-1
chr5_1 exon 3807696 3807841 3807696 ID=Msa0711960-mRNA-1:exon:1441;Parent=Msa0711960-mRNA-1
chr5_1 exon 3808829 3809319 3808829 ID=Msa0711960-mRNA-1:exon:1442;Parent=Msa0711960-mRNA-1
chr5_1 five_prime_UTR 3804867 3805030 3804867 ID=Msa0711960-mRNA-1:five_prime_utr;Parent=Msa0711960-mRNA-1
chr5_1 CDS 3805031 3805286 3805031 ID=Msa0711960-mRNA-1:cds;Parent=Msa0711960-mRNA-1
chr5_1 CDS 3805377 3805513 3805377 ID=Msa0711960-mRNA-1:cds;Parent=Msa0711960-mRNA-1
chr5_1 CDS 3807696 3807841 3807696 ID=Msa0711960-mRNA-1:cds;Parent=Msa0711960-mRNA-1
chr5_1 CDS 3808829 3808871 3808829 ID=Msa0711960-mRNA-1:cds;Parent=Msa0711960-mRNA-1
chr5_1 three_prime_UTR 3808872 3809319 3808872 ID=Msa0711960-mRNA-1:three_prime_utr;Parent=Msa0711960-mRNA-1
Gene Sequence

>Msa0711960

ATGCAAGGAAGCGCCGCCGACGGAGAAGCTTTGGATTTCGAGCCAGAGGAAGATGACTTGATGGACGAAGAAGGTGCTGTTGACGCCGAAGCTTCTCCTCCACATCCCAAACTCAAATCCGCCATCACTTCCGTTCCCAAAAAAACCAAAGGTCGCGGTTTCCGTCAGGATTCCGATTCCTCTAACCGTAACTCTCGTCTCGCTGATTCCGGTTTCGATACTCTCACTGCTGAGGGTGGTCCTGGTCCTCAAAGATCTATTGAAGGATGGATTATTTTGGTGACTGGTGTACATGAGGAAGCTCAAGATGATGATTTGCAGAATGCTTTTGGTGAATATGGTGATATTAAGAATCTTCACTTGAATCTTGATCGCCGTACTGGTTTTGTTAAGGGTTATGCACTGATTGAATATGAGCGCTCTGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGTGCTTCTCACACAAACCATTTATGTTGATTGGGCTTTCAGCAGTGGACCTATCAATGAGTCAGTTAGAAGAAACAGACCTCAGCGGCGCTCCAGGAGTCCTCCTAGGAGGAGATATTGA
Protein sequence

>Msa0711960

MQGSAADGEALDFEPEEDDLMDEEGAVDAEASPPHPKLKSAITSVPKKTKGRGFRQDSDSSNRNSRLADSGFDTLTAEGGPGPQRSIEGWIILVTGVHEEAQDDDLQNAFGEYGDIKNLHLNLDRRTGFVKGYALIEYERSEEARNAIENLNGSVLLTQTIYVDWAFSSGPINESVRRNRPQRRSRSPPRRRY*