AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0712840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712840 MtrunA17_Chr5g0406031 99.573 234 1 0 1 234 1 234 4.96e-171 470
Msa0712840 MtrunA17_Chr8g0371291 70.513 234 59 2 1 234 2 225 1.71e-113 324
Msa0712840 MtrunA17_Chr4g0060981 42.640 197 106 3 42 234 26 219 2.00e-47 156
Msa0712840 MtrunA17_Chr5g0444141 36.818 220 116 5 13 231 65 262 2.31e-31 116
Msa0712840 MtrunA17_Chr5g0444161 36.842 190 110 2 43 231 47 227 4.96e-30 111
Msa0712840 MtrunA17_Chr5g0437361 41.975 81 47 0 154 234 68 148 6.55e-18 78.2
Msa0712840 MtrunA17_Chr1g0198201 44.595 74 40 1 158 231 58 130 4.02e-17 77.4
Msa0712840 MtrunA17_Chr3g0128771 45.455 77 42 0 158 234 88 164 5.05e-17 75.9
Msa0712840 MtrunA17_Chr4g0067591 45.205 73 36 1 159 231 78 146 1.43e-16 76.6
Msa0712840 MtrunA17_Chr8g0369571 61.702 47 18 0 187 233 88 134 2.06e-16 74.3
Msa0712840 MtrunA17_Chr4g0030831 33.945 109 64 2 131 231 46 154 4.67e-16 73.2
Msa0712840 MtrunA17_Chr7g0248831 38.028 71 44 0 161 231 80 150 1.15e-15 72.4
Msa0712840 MtrunA17_Chr5g0409211 50.000 58 29 0 174 231 79 136 2.64e-15 71.2
Msa0712840 MtrunA17_Chr7g0276591 53.571 56 26 0 179 234 91 146 4.26e-15 72.8
Msa0712840 MtrunA17_Chr7g0274741 41.892 74 42 1 159 231 68 141 6.83e-15 70.5
Msa0712840 MtrunA17_Chr2g0295571 39.286 84 49 1 148 231 80 161 8.35e-15 72.0
Msa0712840 MtrunA17_Chr5g0411081 62.222 45 17 0 187 231 146 190 9.75e-15 72.4
Msa0712840 MtrunA17_Chr8g0366561 64.444 45 16 0 187 231 140 184 1.14e-14 72.0
Msa0712840 MtrunA17_Chr5g0426871 28.030 132 86 2 104 234 59 182 1.46e-14 72.0
Msa0712840 MtrunA17_Chr8g0388231 41.667 72 42 0 161 232 309 380 1.47e-14 72.0
Msa0712840 MtrunA17_Chr2g0300331 48.333 60 31 0 172 231 152 211 1.82e-14 70.5
Msa0712840 MtrunA17_Chr5g0407431 40.260 77 46 0 158 234 74 150 2.14e-14 69.7
Msa0712840 MtrunA17_Chr1g0150571 32.692 104 64 2 136 234 175 277 2.31e-14 70.9
Msa0712840 MtrunA17_Chr6g0451051 39.189 74 43 1 158 231 37 108 3.21e-14 67.8
Msa0712840 MtrunA17_Chr3g0126611 32.759 116 73 1 116 231 263 373 5.36e-14 70.5
Msa0712840 MtrunA17_Chr1g0203541 50.000 54 27 0 181 234 128 181 5.57e-14 68.6
Msa0712840 MtrunA17_Chr8g0381731 46.479 71 36 1 161 231 148 216 5.77e-14 69.7
Msa0712840 MtrunA17_Chr6g0486651 39.437 71 41 1 161 231 93 161 7.70e-14 70.1
Msa0712840 MtrunA17_Chr7g0246761 33.696 92 59 2 140 231 43 132 7.84e-14 67.8
Msa0712840 MtrunA17_Chr2g0307411 34.066 91 53 2 145 234 61 145 8.70e-14 67.8
Msa0712840 MtrunA17_Chr2g0279431 57.447 47 20 0 185 231 157 203 9.00e-14 69.7
Msa0712840 MtrunA17_Chr5g0426881 37.662 77 47 1 159 234 112 188 9.06e-14 69.7
Msa0712840 MtrunA17_Chr8g0383921 39.474 76 45 1 159 234 109 183 9.06e-14 67.8
Msa0712840 MtrunA17_Chr3g0132491 36.842 76 47 1 160 234 106 181 9.71e-14 69.7
Msa0712840 MtrunA17_Chr8g0383871 40.000 75 44 1 160 234 111 184 1.09e-13 67.8
Msa0712840 MtrunA17_Chr4g0050041 43.836 73 39 1 159 231 124 194 1.12e-13 69.3
Msa0712840 MtrunA17_Chr3g0105441 44.737 76 38 2 159 231 100 174 1.29e-13 68.2
Msa0712840 MtrunA17_Chr8g0383941 38.462 78 47 1 157 234 103 179 1.33e-13 67.8
Msa0712840 MtrunA17_Chr3g0144241 42.857 77 39 2 159 234 77 149 1.52e-13 67.0
Msa0712840 MtrunA17_Chr3g0123631 53.191 47 22 0 188 234 74 120 1.62e-13 66.6
Msa0712840 MtrunA17_Chr1g0186661 40.789 76 41 2 160 231 98 173 1.66e-13 68.9
Msa0712840 MtrunA17_Chr5g0396611 38.889 72 44 0 161 232 312 383 1.87e-13 68.9
Msa0712840 MtrunA17_Chr3g0117821 35.211 71 46 0 161 231 57 127 1.90e-13 65.9
Msa0712840 MtrunA17_Chr1g0167811 40.260 77 43 2 160 234 93 168 1.94e-13 68.6
Msa0712840 MtrunA17_Chr3g0113811 38.667 75 44 1 159 231 74 148 2.47e-13 65.9
Msa0712840 MtrunA17_Chr5g0426781 57.447 47 20 0 185 231 150 196 2.50e-13 68.2
Msa0712840 MtrunA17_Chr5g0409201 45.588 68 34 1 167 231 68 135 2.71e-13 65.5
Msa0712840 MtrunA17_Chr8g0370171 39.189 74 45 0 158 231 67 140 2.82e-13 66.6
Msa0712840 MtrunA17_Chr3g0126931 33.058 121 67 4 121 231 53 169 2.82e-13 68.2
Msa0712840 MtrunA17_Chr7g0244851 42.857 77 36 3 161 234 81 152 2.84e-13 65.9
Msa0712840 MtrunA17_Chr3g0123641 53.191 47 22 0 188 234 74 120 3.02e-13 67.0
Msa0712840 MtrunA17_Chr6g0451031 35.135 74 45 1 158 231 41 111 3.18e-13 64.7
Msa0712840 MtrunA17_Chr7g0274721 49.057 53 27 0 179 231 83 135 3.29e-13 65.5
Msa0712840 MtrunA17_Chr1g0184631 40.000 75 44 1 158 231 65 139 3.73e-13 65.5
Msa0712840 MtrunA17_Chr3g0143301 46.053 76 36 2 159 234 46 116 4.09e-13 64.3
Msa0712840 MtrunA17_Chr8g0383881 37.662 77 47 1 158 234 100 175 4.33e-13 66.2
Msa0712840 MtrunA17_Chr2g0327791 38.158 76 46 1 156 231 103 177 5.00e-13 65.9
Msa0712840 MtrunA17_Chr7g0274731 49.057 53 27 0 179 231 104 156 5.12e-13 65.5
Msa0712840 MtrunA17_Chr5g0396601 38.889 72 44 0 161 232 322 393 5.79e-13 67.4
Msa0712840 MtrunA17_Chr8g0383861 37.662 77 47 1 158 234 110 185 5.88e-13 65.9
Msa0712840 MtrunA17_Chr5g0396591 37.500 72 45 0 161 232 212 283 6.01e-13 66.6
Msa0712840 MtrunA17_Chr8g0388201 36.111 72 46 0 161 232 319 390 6.53e-13 67.4
Msa0712840 MtrunA17_Chr7g0274711 40.000 75 44 1 158 231 64 138 7.61e-13 64.7
Msa0712840 MtrunA17_Chr1g0171791 38.750 80 45 2 155 234 128 203 8.03e-13 65.9
Msa0712840 MtrunA17_Chr7g0248841 50.000 44 22 0 189 232 104 147 8.85e-13 64.3
Msa0712840 MtrunA17_Chr5g0427431 52.941 51 22 1 183 231 152 202 1.03e-12 66.6
Msa0712840 MtrunA17_Chr8g0348151 37.500 72 41 1 161 232 90 157 1.14e-12 64.7
Msa0712840 MtrunA17_Chr5g0430781 41.667 72 37 1 160 231 86 152 1.33e-12 64.7
Msa0712840 MtrunA17_Chr3g0118061 38.028 71 44 0 161 231 76 146 1.39e-12 64.7
Msa0712840 MtrunA17_Chr8g0345361 40.278 72 40 1 161 232 92 160 1.58e-12 65.1
Msa0712840 MtrunA17_Chr7g0273051 37.662 77 47 1 159 234 89 165 1.73e-12 65.9
Msa0712840 MtrunA17_Chr1g0191601 35.897 78 49 1 158 234 95 172 1.76e-12 65.9
Msa0712840 MtrunA17_Chr3g0112041 49.057 53 26 1 179 231 203 254 1.94e-12 65.1
Msa0712840 MtrunA17_Chr3g0118071 28.182 110 75 1 122 231 41 146 2.22e-12 64.3
Msa0712840 MtrunA17_Chr4g0059281 36.047 86 52 2 149 234 95 177 2.29e-12 65.1
Msa0712840 MtrunA17_Chr6g0470751 37.662 77 47 1 159 234 95 171 2.45e-12 65.1
Msa0712840 MtrunA17_Chr2g0328531 34.831 89 53 3 147 234 149 233 2.83e-12 65.1
Msa0712840 MtrunA17_Chr4g0073141 54.348 46 21 0 189 234 144 189 2.86e-12 65.5
Msa0712840 MtrunA17_Chr1g0177041 38.889 72 43 1 161 231 74 145 2.94e-12 62.8
Msa0712840 MtrunA17_Chr4g0013561 47.170 53 28 0 179 231 100 152 3.65e-12 63.9
Msa0712840 MtrunA17_Chr2g0317671 34.043 94 54 3 143 231 111 201 3.91e-12 63.2
Msa0712840 MtrunA17_Chr4g0027761 36.111 72 41 1 160 231 99 165 3.92e-12 63.2
Msa0712840 MtrunA17_Chr5g0413841 52.000 50 24 0 185 234 138 187 5.27e-12 64.7
Msa0712840 MtrunA17_Chr3g0114781 36.250 80 47 2 155 234 190 265 5.69e-12 64.3
Msa0712840 MtrunA17_Chr1g0184171 38.356 73 44 1 159 231 101 172 5.96e-12 64.3
Msa0712840 MtrunA17_Chr3g0129671 35.714 84 53 1 151 234 99 181 8.02e-12 62.8
Msa0712840 MtrunA17_Chr6g0481701 36.471 85 51 2 150 234 198 279 8.51e-12 63.9
Msa0712840 MtrunA17_Chr3g0133001 51.064 47 23 0 185 231 152 198 8.86e-12 63.9
Msa0712840 MtrunA17_Chr2g0325141 45.000 60 33 0 172 231 74 133 9.00e-12 61.2
Msa0712840 MtrunA17_Chr4g0052671 33.333 102 66 1 131 232 50 149 9.25e-12 61.2
Msa0712840 MtrunA17_Chr7g0237871 40.909 66 39 0 167 232 136 201 1.06e-11 62.4
Msa0712840 MtrunA17_Chr8g0383901 54.348 46 21 0 189 234 131 176 1.14e-11 62.4
Msa0712840 MtrunA17_Chr2g0325161 34.211 114 61 3 122 231 62 165 1.22e-11 62.4
Msa0712840 MtrunA17_Chr8g0350741 27.907 129 74 4 110 234 21 134 1.41e-11 61.2
Msa0712840 MtrunA17_Chr8g0343571 50.000 50 25 0 185 234 81 130 1.54e-11 60.8
Msa0712840 MtrunA17_Chr3g0121201 36.905 84 44 2 151 234 207 281 1.71e-11 63.2
Msa0712840 MtrunA17_Chr3g0102761 36.667 90 44 3 157 234 243 331 1.89e-11 62.8
Msa0712840 MtrunA17_Chr1g0157091 39.474 76 41 2 159 234 46 116 1.94e-11 59.7
Msa0712840 MtrunA17_Chr8g0383931 54.545 44 20 0 189 232 141 184 2.00e-11 61.6
Msa0712840 MtrunA17_Chr8g0364881 30.159 126 83 3 108 231 14 136 2.05e-11 62.8
Msa0712840 MtrunA17_Chr5g0441191 36.250 80 47 2 155 234 169 244 2.12e-11 62.4
Msa0712840 MtrunA17_Chr6g0451041 48.837 43 22 0 189 231 18 60 3.10e-11 58.5
Msa0712840 MtrunA17_Chr5g0417501 38.667 75 39 2 157 231 89 156 3.78e-11 60.8
Msa0712840 MtrunA17_Chr1g0169651 37.838 74 40 2 161 234 660 727 4.90e-11 62.0
Msa0712840 MtrunA17_Chr3g0112071 40.278 72 39 2 163 234 173 240 5.27e-11 61.6
Msa0712840 MtrunA17_Chr3g0093621 36.364 77 45 2 158 234 162 234 8.78e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712840 AT4G35840.1 78.539 219 46 1 17 234 18 236 4.10e-123 349
Msa0712840 AT2G17730.1 78.341 217 46 1 19 234 25 241 2.35e-120 342
Msa0712840 AT4G35840.2 68.526 251 46 2 17 234 18 268 4.81e-116 332
Msa0712840 AT5G66070.5 76.056 213 47 1 22 234 13 221 3.81e-114 326
Msa0712840 AT5G66070.1 76.056 213 47 1 22 234 13 221 3.81e-114 326
Msa0712840 AT2G17730.2 78.261 207 44 1 19 224 25 231 1.74e-112 323
Msa0712840 AT5G66070.2 68.354 237 47 2 22 234 13 245 1.40e-108 313
Msa0712840 AT5G66070.4 74.269 171 40 1 24 194 15 181 1.55e-81 242
Msa0712840 AT5G66070.3 65.128 195 40 2 24 194 15 205 8.04e-76 228
Msa0712840 AT1G74410.1 39.000 200 120 1 33 232 22 219 7.01e-44 147
Msa0712840 AT3G20395.1 34.921 189 110 4 47 234 40 216 4.18e-34 122
Msa0712840 AT5G05280.1 49.333 75 27 2 160 234 95 158 1.16e-15 72.8
Msa0712840 AT3G03550.1 59.574 47 19 0 185 231 155 201 1.63e-15 75.1
Msa0712840 AT3G16720.1 40.541 74 41 1 158 231 91 161 3.63e-15 73.6
Msa0712840 AT2G46493.1 35.366 82 53 0 150 231 99 180 5.91e-15 70.9
Msa0712840 AT2G17450.1 39.560 91 45 2 154 234 57 147 6.15e-15 70.9
Msa0712840 AT5G17600.1 62.791 43 16 0 189 231 142 184 6.30e-15 73.6
Msa0712840 AT2G27940.1 41.667 72 39 1 160 231 114 182 1.20e-14 71.2
Msa0712840 AT5G42200.1 42.667 75 41 1 160 234 77 149 1.39e-14 69.3
Msa0712840 AT4G30370.1 39.726 73 42 1 159 231 87 157 2.17e-14 69.3
Msa0712840 AT4G28890.1 42.254 71 39 1 161 231 97 165 2.79e-14 71.6
Msa0712840 AT1G72200.1 41.558 77 44 1 159 234 113 189 2.93e-14 71.6
Msa0712840 AT3G10910.1 37.624 101 46 3 145 234 65 159 3.09e-14 68.9
Msa0712840 AT1G76410.1 36.559 93 58 1 142 234 58 149 3.19e-14 68.9
Msa0712840 AT1G20823.1 39.744 78 46 1 157 234 80 156 4.12e-14 68.9
Msa0712840 AT1G49200.1 41.558 77 42 2 159 234 107 181 4.77e-14 69.3
Msa0712840 AT3G18773.1 40.741 81 45 2 155 234 97 175 6.21e-14 68.9
Msa0712840 AT2G46494.1 35.366 82 53 0 150 231 277 358 8.81e-14 70.1
Msa0712840 AT1G04360.1 41.026 78 41 1 159 231 99 176 9.36e-14 70.1
Msa0712840 AT5G01880.1 40.541 74 42 1 161 234 79 150 1.11e-13 67.0
Msa0712840 AT2G18670.1 41.096 73 42 1 159 231 81 152 1.73e-13 67.0
Msa0712840 AT1G72220.1 53.191 47 22 0 185 231 173 219 1.81e-13 69.3
Msa0712840 AT2G20030.1 40.845 71 40 1 161 231 98 166 2.40e-13 68.9
Msa0712840 AT5G10380.1 60.000 45 18 0 187 231 133 177 2.45e-13 68.6
Msa0712840 AT2G35910.1 35.294 102 60 2 132 231 92 189 2.46e-13 67.4
Msa0712840 AT2G46160.1 37.179 78 43 1 161 232 104 181 2.57e-13 67.0
Msa0712840 AT2G46160.2 37.179 78 43 1 161 232 104 181 2.57e-13 67.0
Msa0712840 AT1G28040.1 31.579 95 65 0 137 231 201 295 2.69e-13 68.2
Msa0712840 AT4G10150.1 54.348 46 21 0 189 234 111 156 2.77e-13 67.4
Msa0712840 AT4G10160.1 54.348 46 21 0 189 234 97 142 3.27e-13 67.0
Msa0712840 AT5G20910.1 35.227 88 53 2 150 234 188 274 3.93e-13 67.8
Msa0712840 AT4G33565.1 59.574 47 19 0 185 231 213 259 4.07e-13 68.2
Msa0712840 AT2G25410.1 33.333 111 64 3 126 233 268 371 4.63e-13 68.2
Msa0712840 AT4G15975.1 55.556 45 20 0 187 231 74 118 6.02e-13 66.6
Msa0712840 AT3G05200.1 37.975 79 48 1 157 234 95 173 7.03e-13 67.8
Msa0712840 AT2G35000.1 39.241 79 43 2 159 234 104 180 7.47e-13 67.4
Msa0712840 AT5G53110.1 36.620 71 45 0 161 231 302 372 7.92e-13 67.4
Msa0712840 AT4G40070.1 40.580 69 34 1 166 234 108 169 8.46e-13 67.0
Msa0712840 AT3G56580.3 40.580 69 38 2 166 234 165 230 8.64e-13 67.0
Msa0712840 AT3G56580.1 40.580 69 38 2 166 234 165 230 8.64e-13 67.0
Msa0712840 AT3G56580.2 40.580 69 38 2 166 234 165 230 8.64e-13 67.0
Msa0712840 AT4G26580.1 40.698 86 43 4 155 234 250 333 9.01e-13 67.0
Msa0712840 AT4G26580.2 40.698 86 43 4 155 234 250 333 9.01e-13 67.0
Msa0712840 AT1G14200.1 32.955 88 52 3 150 234 70 153 1.04e-12 64.7
Msa0712840 AT4G09100.1 36.986 73 45 1 160 231 55 127 1.20e-12 63.5
Msa0712840 AT1G53010.1 36.145 83 48 2 157 234 93 175 1.28e-12 64.7
Msa0712840 AT3G18930.2 60.465 43 17 0 189 231 156 198 1.69e-12 66.6
Msa0712840 AT3G18930.3 60.465 43 17 0 189 231 156 198 1.69e-12 66.6
Msa0712840 AT3G18930.1 60.465 43 17 0 189 231 156 198 1.69e-12 66.6
Msa0712840 AT1G49220.1 38.462 78 47 1 157 234 104 180 1.81e-12 65.5
Msa0712840 AT2G46495.1 48.077 52 27 0 180 231 311 362 2.05e-12 66.2
Msa0712840 AT2G46495.2 48.077 52 27 0 180 231 283 334 2.37e-12 65.9
Msa0712840 AT3G48030.2 37.209 86 52 2 149 234 91 174 2.78e-12 65.1
Msa0712840 AT5G06490.1 36.842 76 43 1 161 231 96 171 2.82e-12 63.9
Msa0712840 AT5G43420.1 55.814 43 19 0 189 231 138 180 2.90e-12 65.9
Msa0712840 AT3G61550.1 35.000 80 43 1 161 231 99 178 3.16e-12 63.9
Msa0712840 AT3G48030.1 37.209 86 52 2 149 234 169 252 3.16e-12 65.5
Msa0712840 AT2G18650.1 54.348 46 21 0 189 234 126 171 3.88e-12 65.5
Msa0712840 AT5G07040.1 32.258 93 61 1 141 231 44 136 4.11e-12 62.8
Msa0712840 AT1G33480.1 53.488 43 20 0 189 231 100 142 4.70e-12 64.3
Msa0712840 AT1G72310.1 36.364 77 46 1 155 231 96 169 4.70e-12 64.7
Msa0712840 AT4G17905.1 45.000 60 31 1 172 231 140 197 5.04e-12 64.7
Msa0712840 AT1G22500.1 38.667 75 45 1 161 234 89 163 5.26e-12 65.1
Msa0712840 AT4G17905.2 45.000 60 31 1 172 231 166 223 5.27e-12 64.7
Msa0712840 AT1G53820.1 53.333 45 21 0 187 231 118 162 5.44e-12 64.7
Msa0712840 AT1G49210.1 40.260 77 43 2 159 234 106 180 5.60e-12 63.5
Msa0712840 AT3G19950.2 34.118 85 53 2 150 234 237 318 6.86e-12 64.7
Msa0712840 AT3G19950.3 34.118 85 53 2 150 234 237 318 6.86e-12 64.7
Msa0712840 AT4G30400.1 55.814 43 19 0 189 231 134 176 7.98e-12 64.7
Msa0712840 AT3G19950.1 34.118 85 53 2 150 234 179 260 9.19e-12 63.9
Msa0712840 AT1G60360.1 36.250 80 48 2 155 234 192 268 1.16e-11 63.9
Msa0712840 AT2G34000.1 36.000 75 46 1 160 232 60 134 1.17e-11 61.2
Msa0712840 AT5G27420.1 35.065 77 49 1 159 234 93 169 1.18e-11 63.9
Msa0712840 AT2G40830.1 37.681 69 40 2 166 234 169 234 1.63e-11 63.2
Msa0712840 AT2G40830.3 37.681 69 40 2 166 234 169 234 1.63e-11 63.2
Msa0712840 AT2G40830.4 37.681 69 40 2 166 234 169 234 1.63e-11 63.2
Msa0712840 AT2G40830.2 37.681 69 40 2 166 234 169 234 1.63e-11 63.2
Msa0712840 AT1G23980.1 32.653 98 63 2 134 231 92 186 1.64e-11 63.5
Msa0712840 AT5G57750.1 52.273 44 21 0 188 231 121 164 1.94e-11 62.0
Msa0712840 AT4G24015.1 43.333 60 34 0 172 231 88 147 2.30e-11 60.8
Msa0712840 AT4G09120.1 33.708 89 50 2 151 234 84 168 2.60e-11 62.8
Msa0712840 AT4G09110.1 35.955 89 48 2 151 234 84 168 2.87e-11 62.4
Msa0712840 AT2G44330.1 35.484 93 55 3 145 234 50 140 2.96e-11 60.8
Msa0712840 AT5G05810.1 50.980 51 23 1 183 231 138 188 3.02e-11 62.8
Msa0712840 AT2G34990.2 50.000 48 24 0 187 234 116 163 3.24e-11 62.4
Msa0712840 AT1G04790.1 38.028 71 38 2 161 231 566 630 3.26e-11 63.2
Msa0712840 AT5G47610.1 32.500 80 53 1 155 234 74 152 3.27e-11 60.5
Msa0712840 AT5G56340.1 36.471 85 45 2 150 234 228 303 3.89e-11 62.4
Msa0712840 AT2G34990.1 50.000 48 24 0 187 234 94 141 3.91e-11 62.0
Msa0712840 AT1G35330.1 35.366 82 52 1 154 234 93 174 4.22e-11 62.0
Msa0712840 AT4G26400.2 41.176 68 31 2 167 234 227 285 5.36e-11 62.0
Msa0712840 AT4G26400.1 41.176 68 31 2 167 234 227 285 5.36e-11 62.0
Msa0712840 AT1G49230.1 50.980 51 25 0 184 234 126 176 5.71e-11 60.8
Msa0712840 AT3G10815.1 31.183 93 60 2 142 234 77 165 5.96e-11 60.5
Msa0712840 AT2G47560.1 43.077 65 37 0 167 231 86 150 7.13e-11 60.5
Msa0712840 AT4G35480.1 37.079 89 43 2 159 234 70 158 7.23e-11 60.1
Msa0712840 AT3G55530.1 44.444 54 29 1 178 231 200 252 8.24e-11 60.8
Msa0712840 AT4G38140.1 50.000 48 23 1 185 231 58 105 9.46e-11 58.5

Find 67 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTTGTTCGGTTCTTT+TGG 0.184520 5_1:-4642926 Msa0712840:CDS
TGGTACAAGATTTGGGTTTA+AGG 0.212940 5_1:+4643075 None:intergenic
TGAATTGATGGTACAAGATT+TGG 0.218651 5_1:+4643067 None:intergenic
TTGAATCATCCCTTGTTCTT+TGG 0.242713 5_1:-4642259 Msa0712840:CDS
GTTGACAAAGTTAAACAATT+TGG 0.246551 5_1:-4642896 Msa0712840:CDS
ATATAAGCTTATTTAATTCT+AGG 0.258165 5_1:-4641422 Msa0712840:three_prime_UTR
TATGCAGTTGGAACATTATT+GGG 0.267904 5_1:-4642383 Msa0712840:intron
CTTTGGCATTCTGATGAATC+TGG 0.268428 5_1:-4642242 Msa0712840:CDS
CAAAATCACTGCTGACAATA+TGG 0.283427 5_1:-4641805 Msa0712840:CDS
TACAGATCCCTTCTGCATAA+TGG 0.286937 5_1:+4641518 None:intergenic
CTCGCAATTTCTGTTATCAT+TGG 0.306616 5_1:-4642869 Msa0712840:CDS
TTATGCAGTTGGAACATTAT+TGG 0.308342 5_1:-4642384 Msa0712840:intron
GAATTGATGGTACAAGATTT+GGG 0.322669 5_1:+4643068 None:intergenic
GTACGTTCGGTTTGAATTGA+TGG 0.327980 5_1:+4643055 None:intergenic
CATATACAAGAAGCTGAAAA+TGG 0.338887 5_1:+4641311 None:intergenic
CATTCTGATGAATCTGGAAT+TGG 0.345918 5_1:-4642236 Msa0712840:CDS
CCTTCTCGTTCTTCTTTGTT+CGG 0.352151 5_1:-4642935 Msa0712840:CDS
ACAGATCCCTTCTGCATAAT+GGG 0.371614 5_1:+4641519 None:intergenic
ACAACAAGAACAAGAAGAAT+TGG 0.383363 5_1:+4643028 None:intergenic
TGAACAGCACTCAACATTGC+AGG 0.404709 5_1:+4642034 None:intergenic
TGTGTGAAAATCTAGATAGA+TGG 0.404945 5_1:-4642978 Msa0712840:exon
ACCTCGAATGAAACCGCTTT+CGG 0.406134 5_1:+4642328 None:intergenic
GCTGCCGTTGGTGCTATATC+AGG 0.409617 5_1:-4642305 Msa0712840:CDS
GAACGAGAAGGACATGGATT+TGG 0.415770 5_1:+4642947 None:intergenic
AGAGTTATATAATAAAATAA+TGG 0.417462 5_1:+4643099 None:intergenic
GCTTTGACAGGAGCTTTGAT+AGG 0.421666 5_1:-4642359 Msa0712840:CDS
TTCTTGTTCAGTTTGTCTCC+AGG 0.423090 5_1:-4641763 Msa0712840:intron
TGTTGATATTTATAAGAGAA+AGG 0.428979 5_1:+4643180 None:intergenic
ACATTATTGGGTGCTTTGAC+AGG 0.432101 5_1:-4642371 Msa0712840:CDS
TATTTATAAGAGAAAGGTCT+TGG 0.434864 5_1:+4643186 None:intergenic
CAAAGGGTTATCCGTAGATT+CGG 0.437753 5_1:-4641847 Msa0712840:CDS
ATCTACCTTGCATAGATATG+TGG 0.445633 5_1:-4641562 Msa0712840:CDS
AAGAATTGGTAAAGTACGTT+CGG 0.445719 5_1:+4643042 None:intergenic
GCTGACAATATGGAGGCATC+AGG 0.449417 5_1:-4641795 Msa0712840:CDS
TATAAGAGAAAGGTCTTGGT+TGG 0.454819 5_1:+4643190 None:intergenic
GTTCAAAACATCTTTGACAT+TGG 0.455979 5_1:-4641876 Msa0712840:CDS
CGAATCTACGGATAACCCTT+TGG 0.456589 5_1:+4641848 None:intergenic
CAAAACATCTTTGACATTGG+TGG 0.466592 5_1:-4641873 Msa0712840:CDS
ACCGAAAGCGGTTTCATTCG+AGG 0.472995 5_1:-4642329 Msa0712840:CDS
TTCATTCGAGGTGCTGCCGT+TGG 0.491747 5_1:-4642317 Msa0712840:CDS
TGTTTCCAGGACTTTCAACT+TGG 0.497160 5_1:-4641626 Msa0712840:intron
GTTGAGTGCTGTTCAAAGTC+AGG 0.500376 5_1:-4642026 Msa0712840:intron
CATCAGAATGCCAAAGAACA+AGG 0.502078 5_1:+4642249 None:intergenic
AATAGCACAGATCGTAAAAG+AGG 0.516115 5_1:-4641483 Msa0712840:three_prime_UTR
TTTGACATTGGTGGTTCCAA+AGG 0.524386 5_1:-4641864 Msa0712840:CDS
TTGACATTGGTGGTTCCAAA+GGG 0.534675 5_1:-4641863 Msa0712840:CDS
CTGACAATATGGAGGCATCA+GGG 0.538346 5_1:-4641794 Msa0712840:CDS
AGACTTGTGCGTGAGAGGAT+AGG 0.548829 5_1:-4642058 Msa0712840:CDS
GTTCTTGCCCATTATGCAGA+AGG 0.553778 5_1:-4641526 Msa0712840:CDS
TTATTGTAAGTTTGTTGAGT+GGG 0.555503 5_1:-4642081 Msa0712840:CDS
GATCTTCGAAACCGAATCTA+CGG 0.586617 5_1:+4641836 None:intergenic
CAATGATAACAGAAATTGCG+AGG 0.591128 5_1:+4642870 None:intergenic
AGCTCCTGATATAGCACCAA+CGG 0.599233 5_1:+4642301 None:intergenic
AAAGAAGAACGAGAAGGACA+TGG 0.601349 5_1:+4642941 None:intergenic
CAAACCTAATGCAAAACAGA+AGG 0.616968 5_1:+4642823 None:intergenic
TTCTTGCCCATTATGCAGAA+GGG 0.619811 5_1:-4641525 Msa0712840:CDS
AAAAGCCACATATCTATGCA+AGG 0.625321 5_1:+4641557 None:intergenic
GTTATTGTAAGTTTGTTGAG+TGG 0.631657 5_1:-4642082 Msa0712840:CDS
ATCAGAATGCCAAAGAACAA+GGG 0.633081 5_1:+4642250 None:intergenic
GTGGGAGACTTGTGCGTGAG+AGG 0.638826 5_1:-4642063 Msa0712840:CDS
TGACAATATGGAGGCATCAG+GGG 0.638879 5_1:-4641793 Msa0712840:CDS
CCGAACAAAGAAGAACGAGA+AGG 0.645534 5_1:+4642935 None:intergenic
TGTTGAAACAAGCTTTGATG+AGG 0.659709 5_1:-4641898 Msa0712840:CDS
ATAGGTCAAGAGACCGAAAG+CGG 0.669182 5_1:-4642341 Msa0712840:CDS
AATGATAACAGAAATTGCGA+GGG 0.676404 5_1:+4642871 None:intergenic
AATCACTGCTGACAATATGG+AGG 0.690081 5_1:-4641802 Msa0712840:CDS
TGAAACATGTGATGACAATG+AGG 0.720588 5_1:+4641584 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGTTATATAATAAAATAA+TGG + chr5_1:4641418-4641437 None:intergenic 10.0%
!! AGAGTTATATAATAAAATAA+TGG + chr5_1:4641418-4641437 None:intergenic 10.0%
!!! TTTATGATATTTTGAAGATT+GGG - chr5_1:4641902-4641921 Msa0712840:CDS 15.0%
!! AACAAAATTTACAAAATTGT+AGG - chr5_1:4641981-4642000 Msa0712840:intron 15.0%
!!! TTTATATGTTTGAAGTTTTA+AGG - chr5_1:4642052-4642071 Msa0712840:CDS 15.0%
!!! TTTTGTTTGTTTTTTGAATA+AGG - chr5_1:4642088-4642107 Msa0712840:CDS 15.0%
!!! TTTTTTGAATAAGGTTTAAT+GGG - chr5_1:4642097-4642116 Msa0712840:intron 15.0%
!!! TTCTTTTTTCTTTCTTTTTT+TGG - chr5_1:4643061-4643080 Msa0712840:five_prime_UTR 15.0%
!! ATATAAGCTTATTTAATTCT+AGG - chr5_1:4643092-4643111 Msa0712840:five_prime_UTR 15.0%
!!! TTTATGATATTTTGAAGATT+GGG - chr5_1:4641902-4641921 Msa0712840:CDS 15.0%
!! AACAAAATTTACAAAATTGT+AGG - chr5_1:4641981-4642000 Msa0712840:intron 15.0%
!!! TTTATATGTTTGAAGTTTTA+AGG - chr5_1:4642052-4642071 Msa0712840:CDS 15.0%
!!! TTTTGTTTGTTTTTTGAATA+AGG - chr5_1:4642088-4642107 Msa0712840:CDS 15.0%
!!! TTTTTTGAATAAGGTTTAAT+GGG - chr5_1:4642097-4642116 Msa0712840:intron 15.0%
!!! TTCTTTTTTCTTTCTTTTTT+TGG - chr5_1:4643061-4643080 Msa0712840:five_prime_UTR 15.0%
!! ATATAAGCTTATTTAATTCT+AGG - chr5_1:4643092-4643111 Msa0712840:five_prime_UTR 15.0%
!! TGTTGATATTTATAAGAGAA+AGG + chr5_1:4641337-4641356 None:intergenic 20.0%
!!! TGATATTTTTGTGTTGTTTT+GGG - chr5_1:4641748-4641767 Msa0712840:intron 20.0%
!! TTAGAAGAAAAAATGAAACT+TGG - chr5_1:4641871-4641890 Msa0712840:CDS 20.0%
!! TAGAAGAAAAAATGAAACTT+GGG - chr5_1:4641872-4641891 Msa0712840:CDS 20.0%
!!! GTTTATGATATTTTGAAGAT+TGG - chr5_1:4641901-4641920 Msa0712840:CDS 20.0%
!!! ATTTATGATCTTCTATTTCT+TGG - chr5_1:4642006-4642025 Msa0712840:intron 20.0%
!!! TTTGAAGTTTTAAGGTTTAA+TGG - chr5_1:4642060-4642079 Msa0712840:CDS 20.0%
!!! GTTTTTTGAATAAGGTTTAA+TGG - chr5_1:4642096-4642115 Msa0712840:intron 20.0%
!!! TGTTCAAAAGGATTTTATTA+AGG - chr5_1:4642522-4642541 Msa0712840:intron 20.0%
!!! TTACACTTTTTTTATCAGAT+GGG - chr5_1:4642590-4642609 Msa0712840:intron 20.0%
!!! GATTTGATTTTGATTGATAT+TGG - chr5_1:4642846-4642865 Msa0712840:CDS 20.0%
!! TGTTGATATTTATAAGAGAA+AGG + chr5_1:4641337-4641356 None:intergenic 20.0%
!!! TGATATTTTTGTGTTGTTTT+GGG - chr5_1:4641748-4641767 Msa0712840:intron 20.0%
!! TTAGAAGAAAAAATGAAACT+TGG - chr5_1:4641871-4641890 Msa0712840:CDS 20.0%
!! TAGAAGAAAAAATGAAACTT+GGG - chr5_1:4641872-4641891 Msa0712840:CDS 20.0%
!!! GTTTATGATATTTTGAAGAT+TGG - chr5_1:4641901-4641920 Msa0712840:CDS 20.0%
!!! ATTTATGATCTTCTATTTCT+TGG - chr5_1:4642006-4642025 Msa0712840:intron 20.0%
!!! TTTGAAGTTTTAAGGTTTAA+TGG - chr5_1:4642060-4642079 Msa0712840:CDS 20.0%
!!! GTTTTTTGAATAAGGTTTAA+TGG - chr5_1:4642096-4642115 Msa0712840:intron 20.0%
!!! TGTTCAAAAGGATTTTATTA+AGG - chr5_1:4642522-4642541 Msa0712840:intron 20.0%
!!! TTACACTTTTTTTATCAGAT+GGG - chr5_1:4642590-4642609 Msa0712840:intron 20.0%
!!! GATTTGATTTTGATTGATAT+TGG - chr5_1:4642846-4642865 Msa0712840:CDS 20.0%
! TATTTATAAGAGAAAGGTCT+TGG + chr5_1:4641331-4641350 None:intergenic 25.0%
! GTTGACAAAGTTAAACAATT+TGG - chr5_1:4641618-4641637 Msa0712840:CDS 25.0%
!!! CTGATATTTTTGTGTTGTTT+TGG - chr5_1:4641747-4641766 Msa0712840:intron 25.0%
!! GTTTGGATTTTTCATTGTTT+TGG - chr5_1:4641924-4641943 Msa0712840:intron 25.0%
!! GGATTTTCAACATTTATATG+TGG - chr5_1:4642027-4642046 Msa0712840:CDS 25.0%
!! AATTGGTTGTCTTTTATACT+TGG - chr5_1:4642295-4642314 Msa0712840:CDS 25.0%
!!! TTATTGTAAGTTTGTTGAGT+GGG - chr5_1:4642433-4642452 Msa0712840:intron 25.0%
!!! GTACTTTTGTTTTGTTCAAA+AGG - chr5_1:4642510-4642529 Msa0712840:intron 25.0%
!!! CTTACACTTTTTTTATCAGA+TGG - chr5_1:4642589-4642608 Msa0712840:intron 25.0%
!! TATTGGCATTTTCTGATTAT+TGG - chr5_1:4642863-4642882 Msa0712840:CDS 25.0%
! TATTTATAAGAGAAAGGTCT+TGG + chr5_1:4641331-4641350 None:intergenic 25.0%
! GTTGACAAAGTTAAACAATT+TGG - chr5_1:4641618-4641637 Msa0712840:CDS 25.0%
!!! CTGATATTTTTGTGTTGTTT+TGG - chr5_1:4641747-4641766 Msa0712840:intron 25.0%
!! GTTTGGATTTTTCATTGTTT+TGG - chr5_1:4641924-4641943 Msa0712840:intron 25.0%
!! GGATTTTCAACATTTATATG+TGG - chr5_1:4642027-4642046 Msa0712840:CDS 25.0%
!! AATTGGTTGTCTTTTATACT+TGG - chr5_1:4642295-4642314 Msa0712840:CDS 25.0%
!!! TTATTGTAAGTTTGTTGAGT+GGG - chr5_1:4642433-4642452 Msa0712840:intron 25.0%
!!! GTACTTTTGTTTTGTTCAAA+AGG - chr5_1:4642510-4642529 Msa0712840:intron 25.0%
!!! CTTACACTTTTTTTATCAGA+TGG - chr5_1:4642589-4642608 Msa0712840:intron 25.0%
!! TATTGGCATTTTCTGATTAT+TGG - chr5_1:4642863-4642882 Msa0712840:CDS 25.0%
! GAATTGATGGTACAAGATTT+GGG + chr5_1:4641449-4641468 None:intergenic 30.0%
! TGAATTGATGGTACAAGATT+TGG + chr5_1:4641450-4641469 None:intergenic 30.0%
AAGAATTGGTAAAGTACGTT+CGG + chr5_1:4641475-4641494 None:intergenic 30.0%
ACAACAAGAACAAGAAGAAT+TGG + chr5_1:4641489-4641508 None:intergenic 30.0%
TGTGTGAAAATCTAGATAGA+TGG - chr5_1:4641536-4641555 Msa0712840:CDS 30.0%
AATGATAACAGAAATTGCGA+GGG + chr5_1:4641646-4641665 None:intergenic 30.0%
!!! TGTTGTTTTGGGTTTTTTGT+GGG - chr5_1:4641759-4641778 Msa0712840:intron 30.0%
AAGAAAAAATGAAACTTGGG+AGG - chr5_1:4641875-4641894 Msa0712840:CDS 30.0%
!! GATATTTTGAAGATTGGGTT+TGG - chr5_1:4641907-4641926 Msa0712840:CDS 30.0%
!!! GTTGTTTTGTTTTATGCAGT+TGG - chr5_1:4642119-4642138 Msa0712840:intron 30.0%
TTATGCAGTTGGAACATTAT+TGG - chr5_1:4642130-4642149 Msa0712840:intron 30.0%
TATGCAGTTGGAACATTATT+GGG - chr5_1:4642131-4642150 Msa0712840:intron 30.0%
ATCAATCTGCATAACTCAAA+AGG + chr5_1:4642412-4642431 None:intergenic 30.0%
!! GTTATTGTAAGTTTGTTGAG+TGG - chr5_1:4642432-4642451 Msa0712840:intron 30.0%
GTTCAAAACATCTTTGACAT+TGG - chr5_1:4642638-4642657 Msa0712840:intron 30.0%
!!! CAGCAGTGATTTTGATTTTT+GGG + chr5_1:4642703-4642722 None:intergenic 30.0%
!!! TCAGCAGTGATTTTGATTTT+TGG + chr5_1:4642704-4642723 None:intergenic 30.0%
CATATACAAGAAGCTGAAAA+TGG + chr5_1:4643206-4643225 None:intergenic 30.0%
! CATTTTCAGCTTCTTGTATA+TGG - chr5_1:4643204-4643223 Msa0712840:five_prime_UTR 30.0%
! GAATTGATGGTACAAGATTT+GGG + chr5_1:4641449-4641468 None:intergenic 30.0%
! TGAATTGATGGTACAAGATT+TGG + chr5_1:4641450-4641469 None:intergenic 30.0%
AAGAATTGGTAAAGTACGTT+CGG + chr5_1:4641475-4641494 None:intergenic 30.0%
ACAACAAGAACAAGAAGAAT+TGG + chr5_1:4641489-4641508 None:intergenic 30.0%
TGTGTGAAAATCTAGATAGA+TGG - chr5_1:4641536-4641555 Msa0712840:CDS 30.0%
AATGATAACAGAAATTGCGA+GGG + chr5_1:4641646-4641665 None:intergenic 30.0%
!!! TGTTGTTTTGGGTTTTTTGT+GGG - chr5_1:4641759-4641778 Msa0712840:intron 30.0%
AAGAAAAAATGAAACTTGGG+AGG - chr5_1:4641875-4641894 Msa0712840:CDS 30.0%
!! GATATTTTGAAGATTGGGTT+TGG - chr5_1:4641907-4641926 Msa0712840:CDS 30.0%
!!! GTTGTTTTGTTTTATGCAGT+TGG - chr5_1:4642119-4642138 Msa0712840:intron 30.0%
TTATGCAGTTGGAACATTAT+TGG - chr5_1:4642130-4642149 Msa0712840:intron 30.0%
TATGCAGTTGGAACATTATT+GGG - chr5_1:4642131-4642150 Msa0712840:intron 30.0%
ATCAATCTGCATAACTCAAA+AGG + chr5_1:4642412-4642431 None:intergenic 30.0%
!! GTTATTGTAAGTTTGTTGAG+TGG - chr5_1:4642432-4642451 Msa0712840:intron 30.0%
GTTCAAAACATCTTTGACAT+TGG - chr5_1:4642638-4642657 Msa0712840:intron 30.0%
!!! CAGCAGTGATTTTGATTTTT+GGG + chr5_1:4642703-4642722 None:intergenic 30.0%
!!! TCAGCAGTGATTTTGATTTT+TGG + chr5_1:4642704-4642723 None:intergenic 30.0%
CATATACAAGAAGCTGAAAA+TGG + chr5_1:4643206-4643225 None:intergenic 30.0%
! CATTTTCAGCTTCTTGTATA+TGG - chr5_1:4643204-4643223 Msa0712840:five_prime_UTR 30.0%
TATAAGAGAAAGGTCTTGGT+TGG + chr5_1:4641327-4641346 None:intergenic 35.0%
! TGGTACAAGATTTGGGTTTA+AGG + chr5_1:4641442-4641461 None:intergenic 35.0%
! TCTTCTTTGTTCGGTTCTTT+TGG - chr5_1:4641588-4641607 Msa0712840:CDS 35.0%
! CTTCTTTGTTCGGTTCTTTT+GGG - chr5_1:4641589-4641608 Msa0712840:CDS 35.0%
CAATGATAACAGAAATTGCG+AGG + chr5_1:4641647-4641666 None:intergenic 35.0%
CTCGCAATTTCTGTTATCAT+TGG - chr5_1:4641645-4641664 Msa0712840:intron 35.0%
! TTGACCTTCTGTTTTGCATT+AGG - chr5_1:4641687-4641706 Msa0712840:intron 35.0%
CAAACCTAATGCAAAACAGA+AGG + chr5_1:4641694-4641713 None:intergenic 35.0%
!!! GTGTTGTTTTGGGTTTTTTG+TGG - chr5_1:4641758-4641777 Msa0712840:intron 35.0%
AAAAAATGAAACTTGGGAGG+TGG - chr5_1:4641878-4641897 Msa0712840:CDS 35.0%
AAAAATGAAACTTGGGAGGT+GGG - chr5_1:4641879-4641898 Msa0712840:CDS 35.0%
TTGAATCATCCCTTGTTCTT+TGG - chr5_1:4642255-4642274 Msa0712840:CDS 35.0%
ATCAGAATGCCAAAGAACAA+GGG + chr5_1:4642267-4642286 None:intergenic 35.0%
! CATTCTGATGAATCTGGAAT+TGG - chr5_1:4642278-4642297 Msa0712840:CDS 35.0%
!! GTCTTTTATACTTGGTGAGT+AGG - chr5_1:4642303-4642322 Msa0712840:CDS 35.0%
! TGTTGAAACAAGCTTTGATG+AGG - chr5_1:4642616-4642635 Msa0712840:intron 35.0%
CAAAACATCTTTGACATTGG+TGG - chr5_1:4642641-4642660 Msa0712840:intron 35.0%
CAAAATCACTGCTGACAATA+TGG - chr5_1:4642709-4642728 Msa0712840:intron 35.0%
AAAGTGCAAAAAAACCAACC+TGG + chr5_1:4642772-4642791 None:intergenic 35.0%
GAACACTTTGTTCATGTCAT+GGG + chr5_1:4642820-4642839 None:intergenic 35.0%
AGAACACTTTGTTCATGTCA+TGG + chr5_1:4642821-4642840 None:intergenic 35.0%
CTGATTATTGGTATGTTTCC+AGG - chr5_1:4642875-4642894 Msa0712840:CDS 35.0%
TGAAACATGTGATGACAATG+AGG + chr5_1:4642933-4642952 None:intergenic 35.0%
ATCTACCTTGCATAGATATG+TGG - chr5_1:4642952-4642971 Msa0712840:CDS 35.0%
AAAAGCCACATATCTATGCA+AGG + chr5_1:4642960-4642979 None:intergenic 35.0%
! GCATAGATATGTGGCTTTTA+AGG - chr5_1:4642961-4642980 Msa0712840:CDS 35.0%
AATAGCACAGATCGTAAAAG+AGG - chr5_1:4643031-4643050 Msa0712840:five_prime_UTR 35.0%
TATAAGAGAAAGGTCTTGGT+TGG + chr5_1:4641327-4641346 None:intergenic 35.0%
! TGGTACAAGATTTGGGTTTA+AGG + chr5_1:4641442-4641461 None:intergenic 35.0%
! TCTTCTTTGTTCGGTTCTTT+TGG - chr5_1:4641588-4641607 Msa0712840:CDS 35.0%
! CTTCTTTGTTCGGTTCTTTT+GGG - chr5_1:4641589-4641608 Msa0712840:CDS 35.0%
CAATGATAACAGAAATTGCG+AGG + chr5_1:4641647-4641666 None:intergenic 35.0%
CTCGCAATTTCTGTTATCAT+TGG - chr5_1:4641645-4641664 Msa0712840:intron 35.0%
! TTGACCTTCTGTTTTGCATT+AGG - chr5_1:4641687-4641706 Msa0712840:intron 35.0%
CAAACCTAATGCAAAACAGA+AGG + chr5_1:4641694-4641713 None:intergenic 35.0%
!!! GTGTTGTTTTGGGTTTTTTG+TGG - chr5_1:4641758-4641777 Msa0712840:intron 35.0%
AAAAAATGAAACTTGGGAGG+TGG - chr5_1:4641878-4641897 Msa0712840:CDS 35.0%
AAAAATGAAACTTGGGAGGT+GGG - chr5_1:4641879-4641898 Msa0712840:CDS 35.0%
TTGAATCATCCCTTGTTCTT+TGG - chr5_1:4642255-4642274 Msa0712840:CDS 35.0%
ATCAGAATGCCAAAGAACAA+GGG + chr5_1:4642267-4642286 None:intergenic 35.0%
! CATTCTGATGAATCTGGAAT+TGG - chr5_1:4642278-4642297 Msa0712840:CDS 35.0%
!! GTCTTTTATACTTGGTGAGT+AGG - chr5_1:4642303-4642322 Msa0712840:CDS 35.0%
! TGTTGAAACAAGCTTTGATG+AGG - chr5_1:4642616-4642635 Msa0712840:intron 35.0%
CAAAACATCTTTGACATTGG+TGG - chr5_1:4642641-4642660 Msa0712840:intron 35.0%
CAAAATCACTGCTGACAATA+TGG - chr5_1:4642709-4642728 Msa0712840:intron 35.0%
AAAGTGCAAAAAAACCAACC+TGG + chr5_1:4642772-4642791 None:intergenic 35.0%
GAACACTTTGTTCATGTCAT+GGG + chr5_1:4642820-4642839 None:intergenic 35.0%
AGAACACTTTGTTCATGTCA+TGG + chr5_1:4642821-4642840 None:intergenic 35.0%
CTGATTATTGGTATGTTTCC+AGG - chr5_1:4642875-4642894 Msa0712840:CDS 35.0%
TGAAACATGTGATGACAATG+AGG + chr5_1:4642933-4642952 None:intergenic 35.0%
ATCTACCTTGCATAGATATG+TGG - chr5_1:4642952-4642971 Msa0712840:CDS 35.0%
AAAAGCCACATATCTATGCA+AGG + chr5_1:4642960-4642979 None:intergenic 35.0%
! GCATAGATATGTGGCTTTTA+AGG - chr5_1:4642961-4642980 Msa0712840:CDS 35.0%
AATAGCACAGATCGTAAAAG+AGG - chr5_1:4643031-4643050 Msa0712840:five_prime_UTR 35.0%
! GTACGTTCGGTTTGAATTGA+TGG + chr5_1:4641462-4641481 None:intergenic 40.0%
AAAGAAGAACGAGAAGGACA+TGG + chr5_1:4641576-4641595 None:intergenic 40.0%
CCTTCTCGTTCTTCTTTGTT+CGG - chr5_1:4641579-4641598 Msa0712840:CDS 40.0%
ACATTATTGGGTGCTTTGAC+AGG - chr5_1:4642143-4642162 Msa0712840:intron 40.0%
CATCAGAATGCCAAAGAACA+AGG + chr5_1:4642268-4642287 None:intergenic 40.0%
CTTTGGCATTCTGATGAATC+TGG - chr5_1:4642272-4642291 Msa0712840:CDS 40.0%
! CAAGAGATCTTTTCTTGTGC+TGG - chr5_1:4642335-4642354 Msa0712840:CDS 40.0%
! TTTGACATTGGTGGTTCCAA+AGG - chr5_1:4642650-4642669 Msa0712840:intron 40.0%
! TTGACATTGGTGGTTCCAAA+GGG - chr5_1:4642651-4642670 Msa0712840:intron 40.0%
CAAAGGGTTATCCGTAGATT+CGG - chr5_1:4642667-4642686 Msa0712840:intron 40.0%
GATCTTCGAAACCGAATCTA+CGG + chr5_1:4642681-4642700 None:intergenic 40.0%
AATCACTGCTGACAATATGG+AGG - chr5_1:4642712-4642731 Msa0712840:intron 40.0%
TTCTTGTTCAGTTTGTCTCC+AGG - chr5_1:4642751-4642770 Msa0712840:intron 40.0%
TGTTTCCAGGACTTTCAACT+TGG - chr5_1:4642888-4642907 Msa0712840:CDS 40.0%
!!! GATATGTGGCTTTTAAGGCA+TGG - chr5_1:4642966-4642985 Msa0712840:exon 40.0%
TTCTTGCCCATTATGCAGAA+GGG - chr5_1:4642989-4643008 Msa0712840:five_prime_UTR 40.0%
ACAGATCCCTTCTGCATAAT+GGG + chr5_1:4642998-4643017 None:intergenic 40.0%
TACAGATCCCTTCTGCATAA+TGG + chr5_1:4642999-4643018 None:intergenic 40.0%
! GTACGTTCGGTTTGAATTGA+TGG + chr5_1:4641462-4641481 None:intergenic 40.0%
AAAGAAGAACGAGAAGGACA+TGG + chr5_1:4641576-4641595 None:intergenic 40.0%
CCTTCTCGTTCTTCTTTGTT+CGG - chr5_1:4641579-4641598 Msa0712840:CDS 40.0%
ACATTATTGGGTGCTTTGAC+AGG - chr5_1:4642143-4642162 Msa0712840:intron 40.0%
CATCAGAATGCCAAAGAACA+AGG + chr5_1:4642268-4642287 None:intergenic 40.0%
CTTTGGCATTCTGATGAATC+TGG - chr5_1:4642272-4642291 Msa0712840:CDS 40.0%
! CAAGAGATCTTTTCTTGTGC+TGG - chr5_1:4642335-4642354 Msa0712840:CDS 40.0%
! TTTGACATTGGTGGTTCCAA+AGG - chr5_1:4642650-4642669 Msa0712840:intron 40.0%
! TTGACATTGGTGGTTCCAAA+GGG - chr5_1:4642651-4642670 Msa0712840:intron 40.0%
CAAAGGGTTATCCGTAGATT+CGG - chr5_1:4642667-4642686 Msa0712840:intron 40.0%
GATCTTCGAAACCGAATCTA+CGG + chr5_1:4642681-4642700 None:intergenic 40.0%
AATCACTGCTGACAATATGG+AGG - chr5_1:4642712-4642731 Msa0712840:intron 40.0%
TTCTTGTTCAGTTTGTCTCC+AGG - chr5_1:4642751-4642770 Msa0712840:intron 40.0%
TGTTTCCAGGACTTTCAACT+TGG - chr5_1:4642888-4642907 Msa0712840:CDS 40.0%
!!! GATATGTGGCTTTTAAGGCA+TGG - chr5_1:4642966-4642985 Msa0712840:exon 40.0%
TTCTTGCCCATTATGCAGAA+GGG - chr5_1:4642989-4643008 Msa0712840:five_prime_UTR 40.0%
ACAGATCCCTTCTGCATAAT+GGG + chr5_1:4642998-4643017 None:intergenic 40.0%
TACAGATCCCTTCTGCATAA+TGG + chr5_1:4642999-4643018 None:intergenic 40.0%
GAACGAGAAGGACATGGATT+TGG + chr5_1:4641570-4641589 None:intergenic 45.0%
CCGAACAAAGAAGAACGAGA+AGG + chr5_1:4641582-4641601 None:intergenic 45.0%
! GCTTTGACAGGAGCTTTGAT+AGG - chr5_1:4642155-4642174 Msa0712840:intron 45.0%
ATAGGTCAAGAGACCGAAAG+CGG - chr5_1:4642173-4642192 Msa0712840:intron 45.0%
ACCTCGAATGAAACCGCTTT+CGG + chr5_1:4642189-4642208 None:intergenic 45.0%
AGCTCCTGATATAGCACCAA+CGG + chr5_1:4642216-4642235 None:intergenic 45.0%
TGAACAGCACTCAACATTGC+AGG + chr5_1:4642483-4642502 None:intergenic 45.0%
! GTTGAGTGCTGTTCAAAGTC+AGG - chr5_1:4642488-4642507 Msa0712840:intron 45.0%
CGAATCTACGGATAACCCTT+TGG + chr5_1:4642669-4642688 None:intergenic 45.0%
!! CTGACAATATGGAGGCATCA+GGG - chr5_1:4642720-4642739 Msa0712840:intron 45.0%
!! TGACAATATGGAGGCATCAG+GGG - chr5_1:4642721-4642740 Msa0712840:intron 45.0%
TGTTCAGTTTGTCTCCAGGT+TGG - chr5_1:4642755-4642774 Msa0712840:intron 45.0%
! TCTCTCCAAGTTGAAAGTCC+TGG + chr5_1:4642896-4642915 None:intergenic 45.0%
GTTCTTGCCCATTATGCAGA+AGG - chr5_1:4642988-4643007 Msa0712840:five_prime_UTR 45.0%
GAACGAGAAGGACATGGATT+TGG + chr5_1:4641570-4641589 None:intergenic 45.0%
CCGAACAAAGAAGAACGAGA+AGG + chr5_1:4641582-4641601 None:intergenic 45.0%
! GCTTTGACAGGAGCTTTGAT+AGG - chr5_1:4642155-4642174 Msa0712840:intron 45.0%
ATAGGTCAAGAGACCGAAAG+CGG - chr5_1:4642173-4642192 Msa0712840:intron 45.0%
ACCTCGAATGAAACCGCTTT+CGG + chr5_1:4642189-4642208 None:intergenic 45.0%
AGCTCCTGATATAGCACCAA+CGG + chr5_1:4642216-4642235 None:intergenic 45.0%
TGAACAGCACTCAACATTGC+AGG + chr5_1:4642483-4642502 None:intergenic 45.0%
! GTTGAGTGCTGTTCAAAGTC+AGG - chr5_1:4642488-4642507 Msa0712840:intron 45.0%
CGAATCTACGGATAACCCTT+TGG + chr5_1:4642669-4642688 None:intergenic 45.0%
!! CTGACAATATGGAGGCATCA+GGG - chr5_1:4642720-4642739 Msa0712840:intron 45.0%
!! TGACAATATGGAGGCATCAG+GGG - chr5_1:4642721-4642740 Msa0712840:intron 45.0%
TGTTCAGTTTGTCTCCAGGT+TGG - chr5_1:4642755-4642774 Msa0712840:intron 45.0%
! TCTCTCCAAGTTGAAAGTCC+TGG + chr5_1:4642896-4642915 None:intergenic 45.0%
GTTCTTGCCCATTATGCAGA+AGG - chr5_1:4642988-4643007 Msa0712840:five_prime_UTR 45.0%
!! AATAGTAATAAATATAAAAA+AGG + chr5_1:4641390-4641409 None:intergenic 5.0%
!! AATAGTAATAAATATAAAAA+AGG + chr5_1:4641390-4641409 None:intergenic 5.0%
ACCGAAAGCGGTTTCATTCG+AGG - chr5_1:4642185-4642204 Msa0712840:intron 50.0%
AGACTTGTGCGTGAGAGGAT+AGG - chr5_1:4642456-4642475 Msa0712840:intron 50.0%
!! GCTGACAATATGGAGGCATC+AGG - chr5_1:4642719-4642738 Msa0712840:intron 50.0%
ACCGAAAGCGGTTTCATTCG+AGG - chr5_1:4642185-4642204 Msa0712840:intron 50.0%
AGACTTGTGCGTGAGAGGAT+AGG - chr5_1:4642456-4642475 Msa0712840:intron 50.0%
!! GCTGACAATATGGAGGCATC+AGG - chr5_1:4642719-4642738 Msa0712840:intron 50.0%
!! TTCATTCGAGGTGCTGCCGT+TGG - chr5_1:4642197-4642216 Msa0712840:intron 55.0%
!! GCTGCCGTTGGTGCTATATC+AGG - chr5_1:4642209-4642228 Msa0712840:intron 55.0%
!! TTCATTCGAGGTGCTGCCGT+TGG - chr5_1:4642197-4642216 Msa0712840:intron 55.0%
!! GCTGCCGTTGGTGCTATATC+AGG - chr5_1:4642209-4642228 Msa0712840:intron 55.0%
GTGGGAGACTTGTGCGTGAG+AGG - chr5_1:4642451-4642470 Msa0712840:intron 60.0%
GTGGGAGACTTGTGCGTGAG+AGG - chr5_1:4642451-4642470 Msa0712840:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 4641287 4643249 4641287 ID=Msa0712840;Name=Msa0712840
chr5_1 mRNA 4641287 4643249 4641287 ID=Msa0712840-mRNA-1;Parent=Msa0712840;Name=Msa0712840-mRNA-1;_AED=0.04;_eAED=0.04;_QI=268|1|1|1|1|1|5|230|234
chr5_1 exon 4641287 4641639 4641287 ID=Msa0712840-mRNA-1:exon:1939;Parent=Msa0712840-mRNA-1
chr5_1 exon 4641764 4641928 4641764 ID=Msa0712840-mRNA-1:exon:1938;Parent=Msa0712840-mRNA-1
chr5_1 exon 4642027 4642110 4642027 ID=Msa0712840-mRNA-1:exon:1937;Parent=Msa0712840-mRNA-1
chr5_1 exon 4642220 4642398 4642220 ID=Msa0712840-mRNA-1:exon:1936;Parent=Msa0712840-mRNA-1
chr5_1 exon 4642828 4643249 4642828 ID=Msa0712840-mRNA-1:exon:1935;Parent=Msa0712840-mRNA-1
chr5_1 five_prime_UTR 4642982 4643249 4642982 ID=Msa0712840-mRNA-1:five_prime_utr;Parent=Msa0712840-mRNA-1
chr5_1 CDS 4642828 4642981 4642828 ID=Msa0712840-mRNA-1:cds;Parent=Msa0712840-mRNA-1
chr5_1 CDS 4642220 4642398 4642220 ID=Msa0712840-mRNA-1:cds;Parent=Msa0712840-mRNA-1
chr5_1 CDS 4642027 4642110 4642027 ID=Msa0712840-mRNA-1:cds;Parent=Msa0712840-mRNA-1
chr5_1 CDS 4641764 4641928 4641764 ID=Msa0712840-mRNA-1:cds;Parent=Msa0712840-mRNA-1
chr5_1 CDS 4641517 4641639 4641517 ID=Msa0712840-mRNA-1:cds;Parent=Msa0712840-mRNA-1
chr5_1 three_prime_UTR 4641287 4641516 4641287 ID=Msa0712840-mRNA-1:three_prime_utr;Parent=Msa0712840-mRNA-1
Gene Sequence

>Msa0712840

ATGGATTTTGTACCAAATCCATGTCCTTCTCGTTCTTCTTTGTTCGGTTCTTTTGGGAATTTCGTTGACAAAGTTAAACAATTTGGTACCCTCGCAATTTCTGTTATCATTGGAAACATTTTCTCTGCGATCTTGACCTTCTGTTTTGCATTAGTTGGAACATTATTGGGTGCTTTGACAGGAGCTTTGATAGGTCAAGAGACCGAAAGCGGTTTCATTCGAGGTGCTGCCGTTGGTGCTATATCAGGAGCTGTTTTTTCTATTGAAGTTTTTGAATCATCCCTTGTTCTTTGGCATTCTGATGAATCTGGAATTGGTTGTCTTTTATACTTGATTGATGTTATTGTAAGTTTGTTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCTGCAATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACAAGCTTTGATGAGGTTCAAAACATCTTTGACATTGGTGGTTCCAAAGGGTTATCCGTAGATTCGGTTTCGAAGATCCCAAAAATCAAAATCACTGCTGACAATATGGAGGCATCAGGGGAGAAAGTTTCTTGTTCAGTTTGTCTCCAGGACTTTCAACTTGGAGAGACAGTTAGAAGTCTACCTCATTGTCATCACATGTTTCATCTACCTTGCATAGATATGTGGCTTTTAAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA
Protein sequence

>Msa0712840

MDFVPNPCPSRSSLFGSFGNFVDKVKQFGTLAISVIIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDIGGSKGLSVDSVSKIPKIKITADNMEASGEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL*