Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439980 | XP_003593981.1 | 97.486 | 358 | 9 | 0 | 1 | 358 | 1 | 358 | 0.0 | 730 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439980 | sp|P19515|LIP_RHIMI | 31.855 | 248 | 146 | 10 | 61 | 303 | 131 | 360 | 2.31e-27 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439980 | B7FJ77 | 97.486 | 358 | 9 | 0 | 1 | 358 | 1 | 358 | 0.0 | 730 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016510 | Msa0439980 | 0.807109 | 5.934403e-50 | -8.615850e-47 |
| Msa0020390 | Msa0439980 | 0.820468 | 6.749571e-53 | -8.615850e-47 |
| Msa0020410 | Msa0439980 | 0.800690 | 1.280618e-48 | -8.615850e-47 |
| Msa0032470 | Msa0439980 | 0.802958 | 4.381985e-49 | -8.615850e-47 |
| Msa0038870 | Msa0439980 | 0.848533 | 5.770221e-60 | -8.615850e-47 |
| Msa0081630 | Msa0439980 | 0.811699 | 6.144878e-51 | -8.615850e-47 |
| Msa0081660 | Msa0439980 | 0.825826 | 3.793420e-54 | -8.615850e-47 |
| Msa0082420 | Msa0439980 | 0.834723 | 2.541913e-56 | -8.615850e-47 |
| Msa0086420 | Msa0439980 | 0.823059 | 1.698257e-53 | -8.615850e-47 |
| Msa0090510 | Msa0439980 | 0.802973 | 4.350581e-49 | -8.615850e-47 |
| Msa0090550 | Msa0439980 | 0.813166 | 2.937224e-51 | -8.615850e-47 |
| Msa0111080 | Msa0439980 | 0.823130 | 1.634342e-53 | -8.615850e-47 |
| Msa0115790 | Msa0439980 | 0.803919 | 2.770254e-49 | -8.615850e-47 |
| Msa0127870 | Msa0439980 | 0.814168 | 1.767780e-51 | -8.615850e-47 |
| Msa0139010 | Msa0439980 | 0.809986 | 1.442820e-50 | -8.615850e-47 |
| Msa0154920 | Msa0439980 | 0.823782 | 1.150836e-53 | -8.615850e-47 |
| Msa0160960 | Msa0439980 | 0.814674 | 1.366074e-51 | -8.615850e-47 |
| Msa0167980 | Msa0439980 | 0.827504 | 1.508844e-54 | -8.615850e-47 |
| Msa0174010 | Msa0439980 | 0.809066 | 2.273388e-50 | -8.615850e-47 |
| Msa0182990 | Msa0439980 | 0.810479 | 1.129148e-50 | -8.615850e-47 |
| Msa0183910 | Msa0439980 | 0.808120 | 3.619392e-50 | -8.615850e-47 |
| Msa0187490 | Msa0439980 | 0.803013 | 4.267920e-49 | -8.615850e-47 |
| Msa0190590 | Msa0439980 | 0.814909 | 1.211719e-51 | -8.615850e-47 |
| Msa0191070 | Msa0439980 | 0.873776 | 1.131232e-67 | -8.615850e-47 |
| Msa0194080 | Msa0439980 | 0.820714 | 5.928370e-53 | -8.615850e-47 |
| Msa0196670 | Msa0439980 | 0.834511 | 2.873103e-56 | -8.615850e-47 |
| Msa0230610 | Msa0439980 | 0.815369 | 9.578815e-52 | -8.615850e-47 |
| Msa0232790 | Msa0439980 | 0.816034 | 6.809652e-52 | -8.615850e-47 |
| Msa0233370 | Msa0439980 | 0.841364 | 4.970235e-58 | -8.615850e-47 |
| Msa0237320 | Msa0439980 | 0.988320 | 1.474742e-173 | -8.615850e-47 |
| Msa0374440 | Msa0439980 | 0.830250 | 3.264381e-55 | -8.615850e-47 |
| Msa0374530 | Msa0439980 | 0.828055 | 1.111877e-54 | -8.615850e-47 |
| Msa0374570 | Msa0439980 | 0.823486 | 1.349871e-53 | -8.615850e-47 |
| Msa0376910 | Msa0439980 | 0.805719 | 1.165192e-49 | -8.615850e-47 |
| Msa0382310 | Msa0439980 | 0.815597 | 8.522762e-52 | -8.615850e-47 |
| Msa0385500 | Msa0439980 | 0.814822 | 1.266687e-51 | -8.615850e-47 |
| Msa0388730 | Msa0439980 | 0.821137 | 4.737518e-53 | -8.615850e-47 |
| Msa0389210 | Msa0439980 | 0.819110 | 1.379046e-52 | -8.615850e-47 |
| Msa0390550 | Msa0439980 | 0.812378 | 4.369745e-51 | -8.615850e-47 |
| Msa0403770 | Msa0439980 | 0.809905 | 1.501634e-50 | -8.615850e-47 |
| Msa0431210 | Msa0439980 | 0.812352 | 4.426360e-51 | -8.615850e-47 |
| Msa0432500 | Msa0439980 | 0.801163 | 1.024901e-48 | -8.615850e-47 |
| Msa0439980 | Msa0484630 | 0.807421 | 5.095558e-50 | -8.615850e-47 |
| Msa0439980 | Msa0485710 | 0.820330 | 7.262947e-53 | -8.615850e-47 |
| Msa0439980 | Msa0520270 | 0.814367 | 1.597013e-51 | -8.615850e-47 |
| Msa0439980 | Msa0527540 | 0.816721 | 4.778079e-52 | -8.615850e-47 |
| Msa0439980 | Msa0527740 | 0.874214 | 8.042388e-68 | -8.615850e-47 |
| Msa0439980 | Msa0528990 | 0.809432 | 1.897894e-50 | -8.615850e-47 |
| Msa0439980 | Msa0542560 | 0.848261 | 6.861932e-60 | -8.615850e-47 |
| Msa0439980 | Msa0544840 | 0.801255 | 9.814542e-49 | -8.615850e-47 |
| Msa0439980 | Msa0566350 | 0.819478 | 1.137104e-52 | -8.615850e-47 |
| Msa0439980 | Msa0566750 | 0.814888 | 1.225039e-51 | -8.615850e-47 |
| Msa0439980 | Msa0600450 | 0.802477 | 5.507624e-49 | -8.615850e-47 |
| Msa0439980 | Msa0604290 | 0.836177 | 1.089999e-56 | -8.615850e-47 |
| Msa0439980 | Msa0605510 | 0.806452 | 8.171314e-50 | -8.615850e-47 |
| Msa0439980 | Msa0623990 | 0.834011 | 3.834842e-56 | -8.615850e-47 |
| Msa0439980 | Msa0624060 | 0.832373 | 9.812314e-56 | -8.615850e-47 |
| Msa0439980 | Msa0646470 | 0.816311 | 5.904771e-52 | -8.615850e-47 |
| Msa0439980 | Msa0657120 | 0.826370 | 2.816446e-54 | -8.615850e-47 |
| Msa0439980 | Msa0676130 | 0.835621 | 1.508609e-56 | -8.615850e-47 |
| Msa0439980 | Msa0676180 | 0.825685 | 4.096798e-54 | -8.615850e-47 |
| Msa0439980 | Msa0689320 | 0.812846 | 3.452006e-51 | -8.615850e-47 |
| Msa0439980 | Msa0701100 | 0.823936 | 1.058858e-53 | -8.615850e-47 |
| Msa0439980 | Msa0703810 | 0.801367 | 9.311277e-49 | -8.615850e-47 |
| Msa0439980 | Msa0712840 | 0.811744 | 6.007596e-51 | -8.615850e-47 |
| Msa0439980 | Msa0727530 | 0.846774 | 1.757958e-59 | -8.615850e-47 |
| Msa0439980 | Msa0746170 | 0.813230 | 2.843405e-51 | -8.615850e-47 |
| Msa0439980 | Msa0746210 | 0.815367 | 9.584994e-52 | -8.615850e-47 |
| Msa0439980 | Msa0750850 | 0.814083 | 1.845745e-51 | -8.615850e-47 |
| Msa0439980 | Msa0769970 | 0.846751 | 1.784466e-59 | -8.615850e-47 |
| Msa0439980 | Msa0808090 | 0.816443 | 5.515851e-52 | -8.615850e-47 |
| Msa0439980 | Msa0829220 | 0.811071 | 8.408011e-51 | -8.615850e-47 |
| Msa0439980 | Msa0838370 | 0.800547 | 1.369119e-48 | -8.615850e-47 |
| Msa0439980 | Msa0860820 | 0.837239 | 5.844460e-57 | -8.615850e-47 |
| Msa0439980 | Msa0861470 | 0.809809 | 1.574558e-50 | -8.615850e-47 |
| Msa0439980 | Msa0861570 | 0.809687 | 1.672734e-50 | -8.615850e-47 |
| Msa0439980 | Msa0944020 | 0.800277 | 1.554515e-48 | -8.615850e-47 |
| Msa0439980 | Msa0985180 | 0.845433 | 4.073448e-59 | -8.615850e-47 |
| Msa0439980 | Msa0994370 | 0.816814 | 4.555641e-52 | -8.615850e-47 |
| Msa0439980 | Msa1013070 | 0.815716 | 8.014616e-52 | -8.615850e-47 |
| Msa0439980 | Msa1023180 | 0.809734 | 1.634592e-50 | -8.615850e-47 |
| Msa0439980 | Msa1024710 | 0.802309 | 5.963081e-49 | -8.615850e-47 |
| Msa0439980 | Msa1037520 | 0.816322 | 5.870399e-52 | -8.615850e-47 |
| Msa0439980 | Msa1043050 | 0.808875 | 2.498133e-50 | -8.615850e-47 |
| Msa0439980 | Msa1059470 | 0.805687 | 1.183473e-49 | -8.615850e-47 |
| Msa0439980 | Msa1062040 | 0.836296 | 1.016833e-56 | -8.615850e-47 |
| Msa0439980 | Msa1070520 | 0.839721 | 1.337783e-57 | -8.615850e-47 |
| Msa0439980 | Msa1071320 | 0.816321 | 5.874209e-52 | -8.615850e-47 |
| Msa0439980 | Msa1081790 | -0.800685 | 1.283652e-48 | -8.615850e-47 |
| Msa0439980 | Msa1089320 | 0.801382 | 9.243288e-49 | -8.615850e-47 |
| Msa0439980 | Msa1101220 | 0.844900 | 5.677952e-59 | -8.615850e-47 |
| Msa0439980 | Msa1107200 | 0.819838 | 9.411386e-53 | -8.615850e-47 |
| Msa0439980 | Msa1150710 | 0.814739 | 1.321568e-51 | -8.615850e-47 |
| Msa0439980 | Msa1158370 | 0.839857 | 1.233014e-57 | -8.615850e-47 |
| Msa0439980 | Msa1207310 | 0.811149 | 8.086617e-51 | -8.615850e-47 |
| Msa0439980 | Msa1218620 | 0.818116 | 2.318935e-52 | -8.615850e-47 |
| Msa0439980 | Msa1244960 | 0.804882 | 1.745310e-49 | -8.615850e-47 |
| Msa0439980 | Msa1270660 | 0.800781 | 1.226792e-48 | -8.615850e-47 |
| Msa0439980 | Msa1307180 | 0.811812 | 5.805612e-51 | -8.615850e-47 |
| Msa0439980 | Msa1316360 | 0.816861 | 4.445214e-52 | -8.615850e-47 |
| Msa0439980 | Msa1316440 | 0.813408 | 2.599156e-51 | -8.615850e-47 |
| Msa0439980 | Msa1352890 | 0.803326 | 3.677781e-49 | -8.615850e-47 |
| Msa0439980 | Msa1364210 | 0.804505 | 2.092219e-49 | -8.615850e-47 |
| Msa0439980 | Msa1372290 | 0.805163 | 1.524031e-49 | -8.615850e-47 |
| Msa0439980 | Msa1378410 | 0.830635 | 2.628894e-55 | -8.615850e-47 |
| Msa0439980 | Msa1382020 | 0.823647 | 1.237824e-53 | -8.615850e-47 |
| Msa0439980 | Msa1407760 | 0.810603 | 1.061975e-50 | -8.615850e-47 |
| Msa0439980 | Msa1411250 | 0.812793 | 3.545322e-51 | -8.615850e-47 |
| Msa0439980 | Msa1419840 | 0.811518 | 6.724644e-51 | -8.615850e-47 |
| Msa0439980 | Msa1428780 | 0.808528 | 2.962842e-50 | -8.615850e-47 |
| Msa0439980 | Msa1437730 | 0.812716 | 3.685309e-51 | -8.615850e-47 |
| Msa0439980 | Msa1448630 | 0.805661 | 1.198701e-49 | -8.615850e-47 |
| Msa0439980 | Msa1457620 | 0.825905 | 3.631956e-54 | -8.615850e-47 |
| Msa0257490 | Msa0439980 | 0.818856 | 1.575520e-52 | -8.615850e-47 |
| Msa0259680 | Msa0439980 | 0.820296 | 7.394496e-53 | -8.615850e-47 |
| Msa0272300 | Msa0439980 | 0.820639 | 6.166079e-53 | -8.615850e-47 |
| Msa0273770 | Msa0439980 | 0.813579 | 2.383137e-51 | -8.615850e-47 |
| Msa0274340 | Msa0439980 | 0.812433 | 4.250499e-51 | -8.615850e-47 |
| Msa0274740 | Msa0439980 | 0.986040 | 1.768020e-165 | -8.615850e-47 |
| Msa0276100 | Msa0439980 | 0.827291 | 1.696980e-54 | -8.615850e-47 |
| Msa0277960 | Msa0439980 | 0.809463 | 1.868879e-50 | -8.615850e-47 |
| Msa0296790 | Msa0439980 | 0.801054 | 1.079167e-48 | -8.615850e-47 |
| Msa0310430 | Msa0439980 | 0.810012 | 1.424023e-50 | -8.615850e-47 |
| Msa0311720 | Msa0439980 | 0.821398 | 4.125028e-53 | -8.615850e-47 |
| Msa0315540 | Msa0439980 | 0.980109 | 1.817001e-149 | -8.615850e-47 |
| Msa0316390 | Msa0439980 | 0.826837 | 2.178472e-54 | -8.615850e-47 |
| Msa0331020 | Msa0439980 | 0.800687 | 1.282134e-48 | -8.615850e-47 |
| Msa0341480 | Msa0439980 | 0.826564 | 2.531548e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439980 | MtrunA17_Chr2g0286301 | 97.486 | 358 | 9 | 0 | 1 | 358 | 1 | 358 | 0.0 | 730 |
| Msa0439980 | MtrunA17_Chr7g0260671 | 36.145 | 166 | 78 | 7 | 98 | 239 | 198 | 359 | 1.05e-13 | 72.0 |
| Msa0439980 | MtrunA17_Chr2g0283561 | 31.319 | 182 | 90 | 8 | 89 | 237 | 150 | 329 | 6.54e-13 | 69.3 |
| Msa0439980 | MtrunA17_Chr7g0260681 | 33.735 | 166 | 82 | 7 | 98 | 239 | 198 | 359 | 1.04e-12 | 68.9 |
| Msa0439980 | MtrunA17_Chr4g0046011 | 29.891 | 184 | 93 | 9 | 83 | 234 | 110 | 289 | 2.83e-12 | 67.4 |
| Msa0439980 | MtrunA17_Chr7g0250561 | 29.762 | 168 | 90 | 6 | 98 | 239 | 191 | 356 | 2.93e-12 | 67.4 |
| Msa0439980 | MtrunA17_Chr4g0039301 | 32.919 | 161 | 85 | 5 | 98 | 237 | 223 | 381 | 8.55e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439980 | AT5G18640.1 | 60.694 | 346 | 132 | 4 | 1 | 343 | 1 | 345 | 9.32e-159 | 449 |
| Msa0439980 | AT5G18640.3 | 60.694 | 346 | 132 | 4 | 1 | 343 | 1 | 345 | 9.32e-159 | 449 |
| Msa0439980 | AT5G18640.4 | 60.694 | 346 | 132 | 4 | 1 | 343 | 13 | 357 | 1.64e-158 | 449 |
| Msa0439980 | AT5G18640.2 | 60.694 | 346 | 132 | 4 | 1 | 343 | 13 | 357 | 1.64e-158 | 449 |
| Msa0439980 | AT5G18630.2 | 61.782 | 348 | 129 | 4 | 1 | 345 | 1 | 347 | 5.13e-158 | 447 |
| Msa0439980 | AT5G18630.1 | 61.605 | 349 | 129 | 5 | 1 | 345 | 1 | 348 | 3.74e-156 | 443 |
| Msa0439980 | AT5G18640.5 | 64.336 | 286 | 100 | 2 | 1 | 284 | 1 | 286 | 3.70e-140 | 399 |
| Msa0439980 | AT5G18630.3 | 64.336 | 286 | 100 | 2 | 1 | 284 | 1 | 286 | 4.16e-138 | 394 |
| Msa0439980 | AT2G44810.1 | 31.373 | 153 | 90 | 6 | 98 | 237 | 118 | 268 | 8.56e-13 | 69.3 |
| Msa0439980 | AT2G30550.1 | 31.720 | 186 | 90 | 9 | 89 | 240 | 208 | 390 | 1.19e-12 | 69.3 |
| Msa0439980 | AT2G44810.2 | 31.373 | 153 | 90 | 6 | 98 | 237 | 208 | 358 | 1.31e-12 | 68.9 |
| Msa0439980 | AT2G30550.2 | 31.720 | 186 | 90 | 9 | 89 | 240 | 208 | 390 | 2.73e-12 | 68.2 |
Find 100 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGTCCTAACGCTATAAT+TGG | 0.247096 | 3_3:-6472917 | None:intergenic |
| TTTGTAACTCGGATTGTATT+TGG | 0.257884 | 3_3:-6473970 | None:intergenic |
| AATTGCAGAGTATTATAGTA+TGG | 0.259826 | 3_3:+6469791 | Msa0439980:exon |
| TATAGCGTTAGGACATTCTA+TGG | 0.261149 | 3_3:+6472922 | Msa0439980:CDS |
| ACTGGATTGAAGATTTATAT+TGG | 0.271080 | 3_3:+6472678 | Msa0439980:CDS |
| TGTATATATGACTCAATTCT+TGG | 0.277794 | 3_3:+6475310 | Msa0439980:three_prime_UTR |
| ACCATTGCATCGTCCATATC+TGG | 0.298803 | 3_3:-6472722 | None:intergenic |
| TTGAAGAGTCGTGAAGGTTT+TGG | 0.306800 | 3_3:-6469568 | None:intergenic |
| GCCGTTAATGTCTATTGAAT+TGG | 0.311622 | 3_3:+6475144 | Msa0439980:exon |
| CAGGACGTATTGTTGTATTA+TGG | 0.319238 | 3_3:-6472847 | None:intergenic |
| TGATGTCGAGCATTGCTTAC+AGG | 0.324280 | 3_3:+6471769 | Msa0439980:CDS |
| AATGTCCAGGTTATGACATT+TGG | 0.325688 | 3_3:+6473895 | Msa0439980:CDS |
| AGAAGCATATTCCACTAATA+TGG | 0.340478 | 3_3:-6471009 | None:intergenic |
| TGGCTTTATAACATTGGATT+AGG | 0.341814 | 3_3:+6474677 | Msa0439980:CDS |
| AGAATTTCATCAGCCGTAAC+TGG | 0.342339 | 3_3:+6475248 | Msa0439980:three_prime_UTR |
| ACAGACCACTTAGTCTATTA+TGG | 0.351770 | 3_3:+6474958 | Msa0439980:CDS |
| CATTTGGACAACCACGTATT+GGG | 0.356503 | 3_3:+6473911 | Msa0439980:CDS |
| ATCCTATTCTAGGCATTTGT+TGG | 0.358162 | 3_3:+6471919 | Msa0439980:intron |
| TGAAATAAATTATCCAGATA+TGG | 0.373021 | 3_3:+6472709 | Msa0439980:CDS |
| ATAAGCAAATATCATATTCA+TGG | 0.381794 | 3_3:-6475496 | None:intergenic |
| TGTGGTAAATAGTAATAGTA+TGG | 0.381803 | 3_3:-6474021 | None:intergenic |
| GAAGTTTCCTCTTGAATCTC+TGG | 0.389569 | 3_3:-6475055 | None:intergenic |
| ACATTTGGACAACCACGTAT+TGG | 0.395829 | 3_3:+6473910 | Msa0439980:CDS |
| GTAATAGTATGGAGGCAAAT+GGG | 0.400466 | 3_3:-6474010 | None:intergenic |
| GATATTCCAATTATAGCGTT+AGG | 0.403714 | 3_3:+6472911 | Msa0439980:CDS |
| CAGAAAATATATTCCCCATT+CGG | 0.406050 | 3_3:+6469640 | Msa0439980:five_prime_UTR |
| ATAACGATTCTGCATGTTTG+TGG | 0.409009 | 3_3:-6475003 | None:intergenic |
| GAGTAGAGAGTTTGACAATC+AGG | 0.409874 | 3_3:+6475116 | Msa0439980:CDS |
| GATTAGGTAGTCTTGTGTAC+AGG | 0.416781 | 3_3:+6474693 | Msa0439980:CDS |
| TCGCCGCCGCAGAGATTTCC+CGG | 0.418853 | 3_3:-6469608 | None:intergenic |
| ATACATGTAATTTCCCGAAT+GGG | 0.428586 | 3_3:-6469654 | None:intergenic |
| AGTAATAGTATGGAGGCAAA+TGG | 0.428634 | 3_3:-6474011 | None:intergenic |
| TACACTTGCTACCATATTAG+TGG | 0.437079 | 3_3:+6470998 | Msa0439980:CDS |
| GCCAATTCAATAGACATTAA+CGG | 0.447294 | 3_3:-6475145 | None:intergenic |
| AACTTCTCTTCCCTTCTCAC+CGG | 0.451569 | 3_3:+6469589 | Msa0439980:five_prime_UTR |
| GGGATTTGAAATTATAGAGT+TGG | 0.453939 | 3_3:+6471742 | Msa0439980:intron |
| CAGGTATGGCTTTATAACAT+TGG | 0.454190 | 3_3:+6474671 | Msa0439980:intron |
| TGGAAGAAGATTGCGTGTAT+AGG | 0.459075 | 3_3:+6475268 | Msa0439980:three_prime_UTR |
| CGCAAGATGACTCGTATGCC+TGG | 0.469287 | 3_3:-6470964 | None:intergenic |
| AGAAAATATATTCCCCATTC+GGG | 0.478064 | 3_3:+6469641 | Msa0439980:five_prime_UTR |
| ACGCAATCTTCTTCCAGTTA+CGG | 0.483201 | 3_3:-6475261 | None:intergenic |
| ATCTCTTGCTACATAATTGT+GGG | 0.483947 | 3_3:+6475175 | Msa0439980:three_prime_UTR |
| ATTAGGTAGTCTTGTGTACA+GGG | 0.485417 | 3_3:+6474694 | Msa0439980:CDS |
| GATAATAGCACGCGGATCAT+CGG | 0.490054 | 3_3:-6471947 | None:intergenic |
| AATTTGAGAAGGGAACTTGT+AGG | 0.496423 | 3_3:-6475093 | None:intergenic |
| GAGAAGATTTGTGATGGATC+TGG | 0.505465 | 3_3:+6474719 | Msa0439980:CDS |
| TATCTCTTGCTACATAATTG+TGG | 0.505780 | 3_3:+6475174 | Msa0439980:three_prime_UTR |
| GGAAATCTCTGCGGCGGCGA+CGG | 0.506631 | 3_3:+6469611 | Msa0439980:five_prime_UTR |
| GTTATGCAACTTACCTCTCT+CGG | 0.514324 | 3_3:-6474063 | None:intergenic |
| TTACGGCTGATGAAATTCTT+CGG | 0.514451 | 3_3:-6475244 | None:intergenic |
| ATTGCAGAGTATTATAGTAT+GGG | 0.517876 | 3_3:+6469792 | Msa0439980:exon |
| AATACATGTAATTTCCCGAA+TGG | 0.518225 | 3_3:-6469655 | None:intergenic |
| CTCTGCGGCGGCGACGGCGA+CGG | 0.518794 | 3_3:+6469617 | Msa0439980:five_prime_UTR |
| AGAGTTTGACAATCAGGAAA+AGG | 0.519904 | 3_3:+6475122 | Msa0439980:CDS |
| ACTTCTCTTCCCTTCTCACC+GGG | 0.525031 | 3_3:+6469590 | Msa0439980:five_prime_UTR |
| ATTCTTCGGCCGCATTTGAA+AGG | 0.525812 | 3_3:-6475230 | None:intergenic |
| AGTCTATTATGGTGTTGACA+TGG | 0.533086 | 3_3:+6474969 | Msa0439980:CDS |
| GTGAGGATCCATCTTGCAGC+AGG | 0.534910 | 3_3:+6474741 | Msa0439980:CDS |
| GTCTATTATGGTGTTGACAT+GGG | 0.539346 | 3_3:+6474970 | Msa0439980:CDS |
| CAGAGATTTCCCGGTGAGAA+GGG | 0.540039 | 3_3:-6469599 | None:intergenic |
| CTTCACAGTCCTTTCAAATG+CGG | 0.540660 | 3_3:+6475221 | Msa0439980:three_prime_UTR |
| GCAGAGATTTCCCGGTGAGA+AGG | 0.541085 | 3_3:-6469600 | None:intergenic |
| CATTTGCAGAACTCAAGACC+AGG | 0.543038 | 3_3:+6470946 | Msa0439980:intron |
| CAACACCATAATAGACTAAG+TGG | 0.543275 | 3_3:-6474963 | None:intergenic |
| ACATTCTATGGGCGGAGCAA+TGG | 0.544513 | 3_3:+6472934 | Msa0439980:CDS |
| TTACCTCTCTCGGAAAGTGC+TGG | 0.547597 | 3_3:-6474053 | None:intergenic |
| TTGACTAACCTGCTGCAAGA+TGG | 0.553754 | 3_3:-6474749 | None:intergenic |
| ACTCTCTACTCAATTTGAGA+AGG | 0.553988 | 3_3:-6475104 | None:intergenic |
| GAGAAGTTGAAGAGTCGTGA+AGG | 0.556471 | 3_3:-6469574 | None:intergenic |
| CTCTCTACTCAATTTGAGAA+GGG | 0.557931 | 3_3:-6475103 | None:intergenic |
| TATCATGGTCATTTGTAACT+CGG | 0.558491 | 3_3:-6473981 | None:intergenic |
| TCCAGATATGGACGATGCAA+TGG | 0.561000 | 3_3:+6472721 | Msa0439980:CDS |
| ACTTGGACGTGCTCTAGATG+TGG | 0.563135 | 3_3:+6471570 | Msa0439980:CDS |
| ATAGTATGGGCAAAACTTCG+TGG | 0.564253 | 3_3:+6469805 | Msa0439980:exon |
| GGACAACCACGTATTGGGAA+TGG | 0.564280 | 3_3:+6473916 | Msa0439980:CDS |
| AGGGTTGAGAAGATTTGTGA+TGG | 0.578073 | 3_3:+6474713 | Msa0439980:CDS |
| GCAAATGGGGAACAATATCA+TGG | 0.581870 | 3_3:-6473996 | None:intergenic |
| GCTATTATCATTGCATTCAG+AGG | 0.582162 | 3_3:+6471961 | Msa0439980:CDS |
| TCAACAGCCCCTAAAACTGC+AGG | 0.585625 | 3_3:-6472866 | None:intergenic |
| GTTGTCCAAATGTCATAACC+TGG | 0.593290 | 3_3:-6473900 | None:intergenic |
| TAATAGTATGGAGGCAAATG+GGG | 0.594902 | 3_3:-6474009 | None:intergenic |
| TACATGTAATTTCCCGAATG+GGG | 0.598485 | 3_3:-6469653 | None:intergenic |
| TATTTAATAAAATTTAACAT+CGG | 0.602386 | 3_3:-6475416 | None:intergenic |
| ATAGCGTTAGGACATTCTAT+GGG | 0.614505 | 3_3:+6472923 | Msa0439980:CDS |
| ATACCAGCACTTTCCGAGAG+AGG | 0.625717 | 3_3:+6474050 | Msa0439980:CDS |
| GGTAAATAGTAATAGTATGG+AGG | 0.628678 | 3_3:-6474018 | None:intergenic |
| TTATGGTGTTGACATGGGAT+CGG | 0.634783 | 3_3:+6474975 | Msa0439980:CDS |
| TAGATGTGGCGACTTGACCA+AGG | 0.642125 | 3_3:+6471584 | Msa0439980:CDS |
| AGCAGCACCAGAGATTCAAG+AGG | 0.642364 | 3_3:+6475048 | Msa0439980:CDS |
| ATTAGTGGAATATGCTTCTG+CGG | 0.652645 | 3_3:+6471013 | Msa0439980:CDS |
| AAGTGCTGGTATGTCTTCTG+TGG | 0.655421 | 3_3:-6474039 | None:intergenic |
| TCACCGGGAAATCTCTGCGG+CGG | 0.657670 | 3_3:+6469605 | Msa0439980:five_prime_UTR |
| TGAAATTCTATACTTAACAT+CGG | 0.658609 | 3_3:-6475335 | None:intergenic |
| GCGTTAGGACATTCTATGGG+CGG | 0.665707 | 3_3:+6472926 | Msa0439980:CDS |
| AAAACACCATTCCCAATACG+TGG | 0.686180 | 3_3:-6473922 | None:intergenic |
| GATTTGTGATGGATCTGGTG+AGG | 0.704710 | 3_3:+6474724 | Msa0439980:CDS |
| TCAGAGGAACTAATGAACAC+AGG | 0.707900 | 3_3:+6471977 | Msa0439980:CDS |
| CATTCTCTACAGGTACATCG+TGG | 0.720950 | 3_3:+6472809 | Msa0439980:intron |
| TTCTCACCGGGAAATCTCTG+CGG | 0.725795 | 3_3:+6469602 | Msa0439980:five_prime_UTR |
| AATGCAATGATAATAGCACG+CGG | 0.784321 | 3_3:-6471955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAAAATAACAATTA+GGG | - | chr3_3:6469689-6469708 | None:intergenic | 10.0% |
| !! | TATCAAATAAAATAACAATT+AGG | - | chr3_3:6469690-6469709 | None:intergenic | 10.0% |
| !!! | TTAATTATTTTTTCATTGTT+TGG | + | chr3_3:6470712-6470731 | Msa0439980:intron | 10.0% |
| !!! | TAATTATTTTTTCATTGTTT+GGG | + | chr3_3:6470713-6470732 | Msa0439980:intron | 10.0% |
| !! | CATAAATAATTTAATAATTG+AGG | + | chr3_3:6471269-6471288 | Msa0439980:intron | 10.0% |
| !! | TATGAATTATATACAATAAA+AGG | + | chr3_3:6471492-6471511 | Msa0439980:intron | 10.0% |
| !! | ATATAAAAACATAAAAACTA+CGG | - | chr3_3:6473409-6473428 | None:intergenic | 10.0% |
| !!! | AAAACAAAATTTTAATGAAT+GGG | - | chr3_3:6475456-6475475 | None:intergenic | 10.0% |
| !! | TCAAATAAAATAACAATTAG+GGG | - | chr3_3:6469688-6469707 | None:intergenic | 15.0% |
| !! | AAAAAGAAATATCTCATATA+TGG | - | chr3_3:6470769-6470788 | None:intergenic | 15.0% |
| !!! | AAGATATTTTACATTTAAAC+AGG | + | chr3_3:6471721-6471740 | Msa0439980:intron | 15.0% |
| !!! | AGATATTTTACATTTAAACA+GGG | + | chr3_3:6471722-6471741 | Msa0439980:intron | 15.0% |
| !!! | TCTTTTTTTCTAAAATATAC+AGG | - | chr3_3:6472117-6472136 | None:intergenic | 15.0% |
| !! | AAAAATAAAGACAATACATA+TGG | - | chr3_3:6473035-6473054 | None:intergenic | 15.0% |
| !!! | TTTATATTTGTTATTTGTGT+TGG | + | chr3_3:6473422-6473441 | Msa0439980:intron | 15.0% |
| !!! | TTATATTTGTTATTTGTGTT+GGG | + | chr3_3:6473423-6473442 | Msa0439980:intron | 15.0% |
| !!! | TTAGTTCTTTTAGTTAAATT+TGG | + | chr3_3:6473577-6473596 | Msa0439980:intron | 15.0% |
| !!! | CAAAACAAAATTTTAATGAA+TGG | - | chr3_3:6475457-6475476 | None:intergenic | 15.0% |
| !!! | CATTCATTAAAATTTTGTTT+TGG | + | chr3_3:6475455-6475474 | Msa0439980:three_prime_UTR | 15.0% |
| !! | AGGAAATAATATCAACAATT+AGG | + | chr3_3:6470077-6470096 | Msa0439980:intron | 20.0% |
| !! | GGAAATAATATCAACAATTA+GGG | + | chr3_3:6470078-6470097 | Msa0439980:intron | 20.0% |
| !! | GTCACATTCTTAAATTTATA+CGG | + | chr3_3:6470200-6470219 | Msa0439980:intron | 20.0% |
| !! | TCACATTCTTAAATTTATAC+GGG | + | chr3_3:6470201-6470220 | Msa0439980:intron | 20.0% |
| !!! | GATTTGCATTTTAAAATAGT+TGG | + | chr3_3:6470293-6470312 | Msa0439980:intron | 20.0% |
| !! | ATCAGAATACCTAATTTAAA+AGG | + | chr3_3:6470640-6470659 | Msa0439980:intron | 20.0% |
| !! | TCTGTAAAATAAAGAAGATA+TGG | - | chr3_3:6471211-6471230 | None:intergenic | 20.0% |
| !!! | TATCAGTTATTGCATTTTAT+CGG | + | chr3_3:6471364-6471383 | Msa0439980:intron | 20.0% |
| !!! | ATAGAATTCATTGTTTCTAT+AGG | - | chr3_3:6471830-6471849 | None:intergenic | 20.0% |
| !! | TTATTATTACATCCTATTCT+AGG | + | chr3_3:6471909-6471928 | Msa0439980:intron | 20.0% |
| !!! | ATAGATTGTTCTTTTTGAAA+GGG | + | chr3_3:6472416-6472435 | Msa0439980:intron | 20.0% |
| !!! | ATGTTTTCTTCATAGTAAAA+TGG | - | chr3_3:6472534-6472553 | None:intergenic | 20.0% |
| !! | TGAAATAAATTATCCAGATA+TGG | + | chr3_3:6472709-6472728 | Msa0439980:CDS | 20.0% |
| !! | ATGATGATAATATTTCAGAA+TGG | - | chr3_3:6472792-6472811 | None:intergenic | 20.0% |
| !! | TATTATTAGAAATTTGAGAG+AGG | + | chr3_3:6473115-6473134 | Msa0439980:intron | 20.0% |
| !! | TATATTGTTGAATTTCATGT+AGG | - | chr3_3:6473229-6473248 | None:intergenic | 20.0% |
| !! | AGTATGTACAAATTTATAGA+TGG | + | chr3_3:6473262-6473281 | Msa0439980:intron | 20.0% |
| !! | ATTTAGTGCATATTACTAAT+AGG | + | chr3_3:6473468-6473487 | Msa0439980:intron | 20.0% |
| !! | TTTAGTGCATATTACTAATA+GGG | + | chr3_3:6473469-6473488 | Msa0439980:intron | 20.0% |
| !!! | ATTTGGTCTATATATTTTTG+TGG | + | chr3_3:6473594-6473613 | Msa0439980:intron | 20.0% |
| !!! | TGATTTTACATTCTTATTAC+AGG | + | chr3_3:6473855-6473874 | Msa0439980:intron | 20.0% |
| !!! | TGATTATACTTTGTTTTTTC+TGG | + | chr3_3:6474162-6474181 | Msa0439980:intron | 20.0% |
| !!! | AGATCATTATTTTGAATACA+AGG | - | chr3_3:6474244-6474263 | None:intergenic | 20.0% |
| !! | TATAACTCTTGGATTATTTA+TGG | + | chr3_3:6474574-6474593 | Msa0439980:intron | 20.0% |
| !!! | AAATTGAAAACAAATTTTGC+AGG | - | chr3_3:6474615-6474634 | None:intergenic | 20.0% |
| !! | TGAAATTCTATACTTAACAT+CGG | - | chr3_3:6475338-6475357 | None:intergenic | 20.0% |
| !! | AATTGCAGAGTATTATAGTA+TGG | + | chr3_3:6469791-6469810 | Msa0439980:exon | 25.0% |
| !! | ATTGCAGAGTATTATAGTAT+GGG | + | chr3_3:6469792-6469811 | Msa0439980:exon | 25.0% |
| ! | TTTGTCAAACTCTTTCAAAA+GGG | - | chr3_3:6470058-6470077 | None:intergenic | 25.0% |
| ! | AATACCTAATTTAAAAGGCA+AGG | + | chr3_3:6470645-6470664 | Msa0439980:intron | 25.0% |
| ! | AAATGCAATAACTGATAGTT+TGG | - | chr3_3:6471361-6471380 | None:intergenic | 25.0% |
| !!! | TGACTTAAACTCTAAAATCT+AGG | - | chr3_3:6471397-6471416 | None:intergenic | 25.0% |
| ! | TACAATAAAAGGACTGAAAT+AGG | + | chr3_3:6471503-6471522 | Msa0439980:intron | 25.0% |
| !! | ATTTGACTCAACTTTTTACT+TGG | + | chr3_3:6471553-6471572 | Msa0439980:CDS | 25.0% |
| !!! | TTCATTGTTTCTATAGGTAA+AGG | - | chr3_3:6471824-6471843 | None:intergenic | 25.0% |
| !! | CATAGATTGTTCTTTTTGAA+AGG | + | chr3_3:6472415-6472434 | Msa0439980:intron | 25.0% |
| !! | TTCCTTTTAAACGTGTTTTA+TGG | - | chr3_3:6472561-6472580 | None:intergenic | 25.0% |
| !! | TTTTATGTAGTTTACAGAAC+TGG | + | chr3_3:6472660-6472679 | Msa0439980:intron | 25.0% |
| ! | ACTGGATTGAAGATTTATAT+TGG | + | chr3_3:6472678-6472697 | Msa0439980:CDS | 25.0% |
| ! | AATATTACAGACACAAAGTA+AGG | - | chr3_3:6472767-6472786 | None:intergenic | 25.0% |
| ! | ATATTATCATCATTCTCTAC+AGG | + | chr3_3:6472799-6472818 | Msa0439980:intron | 25.0% |
| !!! | TAACTATAGTTTAGCTTTCT+TGG | + | chr3_3:6472984-6473003 | Msa0439980:intron | 25.0% |
| !!! | TATTGTCTTTATTTTTCCTC+AGG | + | chr3_3:6473039-6473058 | Msa0439980:intron | 25.0% |
| !!! | TTTTAGGGAAACATTGTATT+TGG | + | chr3_3:6473077-6473096 | Msa0439980:intron | 25.0% |
| ! | ATTTCACACAATAGTAGAAA+GGG | - | chr3_3:6473164-6473183 | None:intergenic | 25.0% |
| ! | AATTTCACACAATAGTAGAA+AGG | - | chr3_3:6473165-6473184 | None:intergenic | 25.0% |
| ! | AATTCAACAATATAGTGTGT+CGG | + | chr3_3:6473235-6473254 | Msa0439980:intron | 25.0% |
| ! | ATGTACAAATTTATAGATGG+TGG | + | chr3_3:6473265-6473284 | Msa0439980:intron | 25.0% |
| ! | AAACTACGGAACAAATTTAT+AGG | - | chr3_3:6473395-6473414 | None:intergenic | 25.0% |
| !!! | TCTATATATTTTTGTGGTGT+TGG | + | chr3_3:6473600-6473619 | Msa0439980:intron | 25.0% |
| !!! | TTGGATTTTAGTTTTAACCT+TGG | - | chr3_3:6473646-6473665 | None:intergenic | 25.0% |
| !!! | CTGATTTGTAGTTTGAATTT+TGG | - | chr3_3:6473755-6473774 | None:intergenic | 25.0% |
| ! | TAAACAAGAAAAAAATGTCC+AGG | + | chr3_3:6473882-6473901 | Msa0439980:CDS | 25.0% |
| ! | TGTGGTAAATAGTAATAGTA+TGG | - | chr3_3:6474024-6474043 | None:intergenic | 25.0% |
| ! | AAAGTATAATCACCATCAAA+GGG | - | chr3_3:6474154-6474173 | None:intergenic | 25.0% |
| !! | TATCATTTTGTATTGCTACT+AGG | - | chr3_3:6474212-6474231 | None:intergenic | 25.0% |
| ! | TGATCTTATCTCTTTCATTA+TGG | + | chr3_3:6474258-6474277 | Msa0439980:intron | 25.0% |
| ! | AAAACAAACTTTGAATGCAT+AGG | - | chr3_3:6474292-6474311 | None:intergenic | 25.0% |
| !!! | TTTTTCAAGAATCTTTGTTG+TGG | + | chr3_3:6474644-6474663 | Msa0439980:intron | 25.0% |
| !!! | TTTGAATTATTGCTTTTTGC+AGG | + | chr3_3:6474914-6474933 | Msa0439980:intron | 25.0% |
| ! | TGTATATATGACTCAATTCT+TGG | + | chr3_3:6475310-6475329 | Msa0439980:three_prime_UTR | 25.0% |
| ! | TCGGAAAGAAAAAAAAAATG+AGG | - | chr3_3:6475400-6475419 | None:intergenic | 25.0% |
| !!! | GTGAAGGTTTTGGATTAAAT+AGG | - | chr3_3:6469561-6469580 | None:intergenic | 30.0% |
| CAGAAAATATATTCCCCATT+CGG | + | chr3_3:6469640-6469659 | Msa0439980:five_prime_UTR | 30.0% | |
| AGAAAATATATTCCCCATTC+GGG | + | chr3_3:6469641-6469660 | Msa0439980:five_prime_UTR | 30.0% | |
| ATACATGTAATTTCCCGAAT+GGG | - | chr3_3:6469657-6469676 | None:intergenic | 30.0% | |
| AATACATGTAATTTCCCGAA+TGG | - | chr3_3:6469658-6469677 | None:intergenic | 30.0% | |
| AGCAATTAACGTATTCTTCA+CGG | + | chr3_3:6469746-6469765 | Msa0439980:intron | 30.0% | |
| AAACGCAAAAAGACATAAAC+AGG | - | chr3_3:6469847-6469866 | None:intergenic | 30.0% | |
| GGAATTGTTTCATGTTTGTT+TGG | + | chr3_3:6469961-6469980 | Msa0439980:intron | 30.0% | |
| TTGTTTCATGTTTGTTTGGT+TGG | + | chr3_3:6469965-6469984 | Msa0439980:intron | 30.0% | |
| !! | AATTGAGCTTTATTTGAGAG+TGG | + | chr3_3:6469991-6470010 | Msa0439980:intron | 30.0% |
| !! | ATTGAGCTTTATTTGAGAGT+GGG | + | chr3_3:6469992-6470011 | Msa0439980:intron | 30.0% |
| TTTATTTGAGAGTGGGAAAA+TGG | + | chr3_3:6469999-6470018 | Msa0439980:intron | 30.0% | |
| TTATTTGAGAGTGGGAAAAT+GGG | + | chr3_3:6470000-6470019 | Msa0439980:intron | 30.0% | |
| AAAATGGGGCAAATAGTTAA+AGG | + | chr3_3:6470015-6470034 | Msa0439980:intron | 30.0% | |
| CTTTGTCAAACTCTTTCAAA+AGG | - | chr3_3:6470059-6470078 | None:intergenic | 30.0% | |
| !! | CTTTTGAAAGAGTTTGACAA+AGG | + | chr3_3:6470057-6470076 | Msa0439980:intron | 30.0% |
| TGTATGTGTTAATGCTTCAT+AGG | + | chr3_3:6470262-6470281 | Msa0439980:intron | 30.0% | |
| AATAGTTGGACGATTATTGT+TGG | + | chr3_3:6470307-6470326 | Msa0439980:intron | 30.0% | |
| ATAGTTGGACGATTATTGTT+GGG | + | chr3_3:6470308-6470327 | Msa0439980:intron | 30.0% | |
| ATGCTTGCATTGTATTTGTA+TGG | - | chr3_3:6470382-6470401 | None:intergenic | 30.0% | |
| TTGTACTAGATAGTGTATCA+TGG | + | chr3_3:6470423-6470442 | Msa0439980:intron | 30.0% | |
| ! | TGATCCTTGCCTTTTAAATT+AGG | - | chr3_3:6470652-6470671 | None:intergenic | 30.0% |
| AAAGGCAAGGATCAATATTA+TGG | + | chr3_3:6470658-6470677 | Msa0439980:intron | 30.0% | |
| AAGGCAAGGATCAATATTAT+GGG | + | chr3_3:6470659-6470678 | Msa0439980:intron | 30.0% | |
| ! | GCAAATGAAAAGTGTATCAT+TGG | - | chr3_3:6470933-6470952 | None:intergenic | 30.0% |
| ! | AGAAGCATATTCCACTAATA+TGG | - | chr3_3:6471012-6471031 | None:intergenic | 30.0% |
| !!! | TTTTATTCTAGTCTTGTCAG+AGG | + | chr3_3:6471100-6471119 | Msa0439980:intron | 30.0% |
| !! | TTTATTCTAGTCTTGTCAGA+GGG | + | chr3_3:6471101-6471120 | Msa0439980:intron | 30.0% |
| !! | GAAAATTTCAAGTTTCAACC+TGG | + | chr3_3:6471149-6471168 | Msa0439980:intron | 30.0% |
| AAAGAAGATATGGTTTGAAG+TGG | - | chr3_3:6471201-6471220 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTGTTACATGCATT+CGG | + | chr3_3:6471443-6471462 | Msa0439980:intron | 30.0% |
| ! | TATCTTTAGACCAGCTATTT+TGG | - | chr3_3:6471707-6471726 | None:intergenic | 30.0% |
| ! | GGGATTTGAAATTATAGAGT+TGG | + | chr3_3:6471742-6471761 | Msa0439980:intron | 30.0% |
| TAATGGTGACTATGGAATTT+GGG | - | chr3_3:6472043-6472062 | None:intergenic | 30.0% | |
| TTAATGGTGACTATGGAATT+TGG | - | chr3_3:6472044-6472063 | None:intergenic | 30.0% | |
| TTCCATAGTCACCATTAAAA+TGG | + | chr3_3:6472046-6472065 | Msa0439980:intron | 30.0% | |
| !! | ATCCATTTTAATGGTGACTA+TGG | - | chr3_3:6472051-6472070 | None:intergenic | 30.0% |
| ! | CTACAATCGATCCATTTTAA+TGG | - | chr3_3:6472060-6472079 | None:intergenic | 30.0% |
| ATACAAACTTCACATGCATA+AGG | - | chr3_3:6472155-6472174 | None:intergenic | 30.0% | |
| TTGTGAATGCAATGTATTAC+TGG | + | chr3_3:6472238-6472257 | Msa0439980:intron | 30.0% | |
| GAGCAAATGACTAAGTAATA+CGG | + | chr3_3:6472273-6472292 | Msa0439980:intron | 30.0% | |
| !!! | GTTTTCAGTTTTTTTGCACA+AGG | + | chr3_3:6472300-6472319 | Msa0439980:intron | 30.0% |
| TAGTAAAATGGTTCTCGTAT+AGG | - | chr3_3:6472522-6472541 | None:intergenic | 30.0% | |
| GTCCATAAAACACGTTTAAA+AGG | + | chr3_3:6472556-6472575 | Msa0439980:intron | 30.0% | |
| ! | GTTTACGTCTTTCAGATTTT+TGG | + | chr3_3:6472585-6472604 | Msa0439980:intron | 30.0% |
| ! | GAAAGAGCAAAGAAGTTTTA+TGG | + | chr3_3:6472887-6472906 | Msa0439980:CDS | 30.0% |
| GATATTCCAATTATAGCGTT+AGG | + | chr3_3:6472911-6472930 | Msa0439980:CDS | 30.0% | |
| ! | GTTTTGTGGACTTGATTTAA+CGG | + | chr3_3:6472961-6472980 | Msa0439980:CDS | 30.0% |
| ATTAGAAATTTGAGAGAGGT+CGG | + | chr3_3:6473119-6473138 | Msa0439980:intron | 30.0% | |
| ! | TGAAATTTTGTCTCACTAAC+TGG | + | chr3_3:6473178-6473197 | Msa0439980:intron | 30.0% |
| !!! | TTGGCAAATCTTTTTTGACA+AGG | + | chr3_3:6473345-6473364 | Msa0439980:intron | 30.0% |
| TCAGATAAGTTAAAATGCCA+AGG | + | chr3_3:6473626-6473645 | Msa0439980:intron | 30.0% | |
| CAAGATATTCCTATTATACG+AGG | + | chr3_3:6473815-6473834 | Msa0439980:intron | 30.0% | |
| ATTATGCATCCTCGTATAAT+AGG | - | chr3_3:6473827-6473846 | None:intergenic | 30.0% | |
| TTTGTAACTCGGATTGTATT+TGG | - | chr3_3:6473973-6473992 | None:intergenic | 30.0% | |
| TATCATGGTCATTTGTAACT+CGG | - | chr3_3:6473984-6474003 | None:intergenic | 30.0% | |
| GGTAAATAGTAATAGTATGG+AGG | - | chr3_3:6474021-6474040 | None:intergenic | 30.0% | |
| AAGTATAATCACCATCAAAG+GGG | - | chr3_3:6474153-6474172 | None:intergenic | 30.0% | |
| CAAAGTATAATCACCATCAA+AGG | - | chr3_3:6474155-6474174 | None:intergenic | 30.0% | |
| AGCAATACAAAATGATAACC+TGG | + | chr3_3:6474215-6474234 | Msa0439980:intron | 30.0% | |
| ! | ATTTTGAATACAAGGAAACC+AGG | - | chr3_3:6474236-6474255 | None:intergenic | 30.0% |
| TTGTCATGATCTATAACTCT+TGG | + | chr3_3:6474563-6474582 | Msa0439980:intron | 30.0% | |
| !! | TGGCTTTATAACATTGGATT+AGG | + | chr3_3:6474677-6474696 | Msa0439980:CDS | 30.0% |
| ! | GTTTTCAGTAAGTCAACATT+CGG | - | chr3_3:6474793-6474812 | None:intergenic | 30.0% |
| TTCAAATTTCAGCAGCTATA+TGG | - | chr3_3:6474900-6474919 | None:intergenic | 30.0% | |
| GCCAATTCAATAGACATTAA+CGG | - | chr3_3:6475148-6475167 | None:intergenic | 30.0% | |
| TATCTCTTGCTACATAATTG+TGG | + | chr3_3:6475174-6475193 | Msa0439980:three_prime_UTR | 30.0% | |
| ATCTCTTGCTACATAATTGT+GGG | + | chr3_3:6475175-6475194 | Msa0439980:three_prime_UTR | 30.0% | |
| TACATGTAATTTCCCGAATG+GGG | - | chr3_3:6469656-6469675 | None:intergenic | 35.0% | |
| ! | TGTCTTTTTGCGTTTTCAGA+TGG | + | chr3_3:6469852-6469871 | Msa0439980:CDS | 35.0% |
| !! | TAGTCTTGTGTGGGTATAAT+TGG | + | chr3_3:6469940-6469959 | Msa0439980:intron | 35.0% |
| TTTCATGTTTGTTTGGTTGG+TGG | + | chr3_3:6469968-6469987 | Msa0439980:intron | 35.0% | |
| TATTTGAGAGTGGGAAAATG+GGG | + | chr3_3:6470001-6470020 | Msa0439980:intron | 35.0% | |
| ! | AATATTCTTTTGCTCGTACG+TGG | + | chr3_3:6470104-6470123 | Msa0439980:intron | 35.0% |
| TTAACACATACACATCACCA+GGG | - | chr3_3:6470254-6470273 | None:intergenic | 35.0% | |
| ATTAACACATACACATCACC+AGG | - | chr3_3:6470255-6470274 | None:intergenic | 35.0% | |
| TTCCCAGAATTGTCAAATAG+CGG | - | chr3_3:6470505-6470524 | None:intergenic | 35.0% | |
| ! | TGACAATTCTGGGAAAACTT+AGG | + | chr3_3:6470510-6470529 | Msa0439980:intron | 35.0% |
| ! | ACCATAGTCTTTTACTCTTG+TGG | + | chr3_3:6470889-6470908 | Msa0439980:intron | 35.0% |
| TCCACAAGAGTAAAAGACTA+TGG | - | chr3_3:6470893-6470912 | None:intergenic | 35.0% | |
| ! | TACACTTGCTACCATATTAG+TGG | + | chr3_3:6470998-6471017 | Msa0439980:CDS | 35.0% |
| ATTAGTGGAATATGCTTCTG+CGG | + | chr3_3:6471013-6471032 | Msa0439980:CDS | 35.0% | |
| AACCTAAGCAATGCATATAG+AGG | + | chr3_3:6471053-6471072 | Msa0439980:intron | 35.0% | |
| TTCCTCTATATGCATTGCTT+AGG | - | chr3_3:6471058-6471077 | None:intergenic | 35.0% | |
| CCTTAAAACCTACTTAAGCA+AGG | - | chr3_3:6471175-6471194 | None:intergenic | 35.0% | |
| ! | CCTTGCTTAAGTAGGTTTTA+AGG | + | chr3_3:6471172-6471191 | Msa0439980:intron | 35.0% |
| ATCAATGTTAGCATGTGAGA+AGG | - | chr3_3:6471297-6471316 | None:intergenic | 35.0% | |
| ! | TATTGCATTTTATCGGTGTG+TGG | + | chr3_3:6471371-6471390 | Msa0439980:intron | 35.0% |
| TAAAAGGACTGAAATAGGTC+TGG | + | chr3_3:6471508-6471527 | Msa0439980:intron | 35.0% | |
| TGTTCATATTATCAGCACCT+TGG | - | chr3_3:6471604-6471623 | None:intergenic | 35.0% | |
| AACTCTTCTTCCAAAATAGC+TGG | + | chr3_3:6471694-6471713 | Msa0439980:intron | 35.0% | |
| ATCCTATTCTAGGCATTTGT+TGG | + | chr3_3:6471919-6471938 | Msa0439980:intron | 35.0% | |
| AATGCAATGATAATAGCACG+CGG | - | chr3_3:6471958-6471977 | None:intergenic | 35.0% | |
| GCTATTATCATTGCATTCAG+AGG | + | chr3_3:6471961-6471980 | Msa0439980:CDS | 35.0% | |
| !! | ACACAGGTGGATTTTATTTC+TGG | + | chr3_3:6471993-6472012 | Msa0439980:intron | 35.0% |
| TGATCCAAAATTGATCAGCA+GGG | + | chr3_3:6472335-6472354 | Msa0439980:intron | 35.0% | |
| ! | GATCATGTTTGAGATGTTGT+AGG | + | chr3_3:6472384-6472403 | Msa0439980:intron | 35.0% |
| GTTCTCGTATAGGTCAATAT+AGG | - | chr3_3:6472512-6472531 | None:intergenic | 35.0% | |
| CAGGACGTATTGTTGTATTA+TGG | - | chr3_3:6472850-6472869 | None:intergenic | 35.0% | |
| GAATGTCCTAACGCTATAAT+TGG | - | chr3_3:6472920-6472939 | None:intergenic | 35.0% | |
| TATAGCGTTAGGACATTCTA+TGG | + | chr3_3:6472922-6472941 | Msa0439980:CDS | 35.0% | |
| ATAGCGTTAGGACATTCTAT+GGG | + | chr3_3:6472923-6472942 | Msa0439980:CDS | 35.0% | |
| CATATGGAACAACAAAACCT+GGG | - | chr3_3:6473019-6473038 | None:intergenic | 35.0% | |
| ACATATGGAACAACAAAACC+TGG | - | chr3_3:6473020-6473039 | None:intergenic | 35.0% | |
| !!! | TCTTTATTTTTCCTCAGGCA+GGG | + | chr3_3:6473044-6473063 | Msa0439980:intron | 35.0% |
| !!! | CAGGGGCTTTGAATATTTTA+GGG | + | chr3_3:6473062-6473081 | Msa0439980:intron | 35.0% |
| TGGACAAGTAAATTGGAACA+GGG | + | chr3_3:6473536-6473555 | Msa0439980:intron | 35.0% | |
| ! | AAATTGGAACAGGGTTTGTT+TGG | + | chr3_3:6473545-6473564 | Msa0439980:intron | 35.0% |
| AATGTCCAGGTTATGACATT+TGG | + | chr3_3:6473895-6473914 | Msa0439980:CDS | 35.0% | |
| TAATAGTATGGAGGCAAATG+GGG | - | chr3_3:6474012-6474031 | None:intergenic | 35.0% | |
| GTAATAGTATGGAGGCAAAT+GGG | - | chr3_3:6474013-6474032 | None:intergenic | 35.0% | |
| AGTAATAGTATGGAGGCAAA+TGG | - | chr3_3:6474014-6474033 | None:intergenic | 35.0% | |
| TACAAGCGCGATAATATAAC+TGG | - | chr3_3:6474115-6474134 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTACCTGTTGCTCA+TGG | + | chr3_3:6474305-6474324 | Msa0439980:intron | 35.0% |
| CAATGACTGCATGCTATTAT+TGG | + | chr3_3:6474374-6474393 | Msa0439980:intron | 35.0% | |
| ! | TGATGCTTGTTTGTCTGTTT+TGG | + | chr3_3:6474410-6474429 | Msa0439980:intron | 35.0% |
| ! | GATGCTTGTTTGTCTGTTTT+GGG | + | chr3_3:6474411-6474430 | Msa0439980:intron | 35.0% |
| ! | ATGCTTGTTTGTCTGTTTTG+GGG | + | chr3_3:6474412-6474431 | Msa0439980:intron | 35.0% |
| CTGATAGAGAAGACACAAAT+AGG | - | chr3_3:6474494-6474513 | None:intergenic | 35.0% | |
| ACTCTTGGATTATTTATGGC+AGG | + | chr3_3:6474578-6474597 | Msa0439980:intron | 35.0% | |
| !! | CAGGTATGGCTTTATAACAT+TGG | + | chr3_3:6474671-6474690 | Msa0439980:intron | 35.0% |
| !! | ATTAGGTAGTCTTGTGTACA+GGG | + | chr3_3:6474694-6474713 | Msa0439980:CDS | 35.0% |
| AATTTCAGCAGCTATATGGA+GGG | - | chr3_3:6474896-6474915 | None:intergenic | 35.0% | |
| AAATTTCAGCAGCTATATGG+AGG | - | chr3_3:6474897-6474916 | None:intergenic | 35.0% | |
| ACAGACCACTTAGTCTATTA+TGG | + | chr3_3:6474958-6474977 | Msa0439980:CDS | 35.0% | |
| CAACACCATAATAGACTAAG+TGG | - | chr3_3:6474966-6474985 | None:intergenic | 35.0% | |
| !! | AGTCTATTATGGTGTTGACA+TGG | + | chr3_3:6474969-6474988 | Msa0439980:CDS | 35.0% |
| !! | GTCTATTATGGTGTTGACAT+GGG | + | chr3_3:6474970-6474989 | Msa0439980:CDS | 35.0% |
| ATAACGATTCTGCATGTTTG+TGG | - | chr3_3:6475006-6475025 | None:intergenic | 35.0% | |
| AATTTGAGAAGGGAACTTGT+AGG | - | chr3_3:6475096-6475115 | None:intergenic | 35.0% | |
| CTCTCTACTCAATTTGAGAA+GGG | - | chr3_3:6475106-6475125 | None:intergenic | 35.0% | |
| ACTCTCTACTCAATTTGAGA+AGG | - | chr3_3:6475107-6475126 | None:intergenic | 35.0% | |
| AGAGTTTGACAATCAGGAAA+AGG | + | chr3_3:6475122-6475141 | Msa0439980:CDS | 35.0% | |
| GCCGTTAATGTCTATTGAAT+TGG | + | chr3_3:6475144-6475163 | Msa0439980:exon | 35.0% | |
| TTACGGCTGATGAAATTCTT+CGG | - | chr3_3:6475247-6475266 | None:intergenic | 35.0% | |
| ! | TTGAAGAGTCGTGAAGGTTT+TGG | - | chr3_3:6469571-6469590 | None:intergenic | 40.0% |
| AATTGCACGAACACGCAATT+TGG | + | chr3_3:6469713-6469732 | Msa0439980:intron | 40.0% | |
| ATTGCACGAACACGCAATTT+GGG | + | chr3_3:6469714-6469733 | Msa0439980:intron | 40.0% | |
| ATAGTATGGGCAAAACTTCG+TGG | + | chr3_3:6469805-6469824 | Msa0439980:exon | 40.0% | |
| ! | TTTGCGTTTTCAGATGGTAG+AGG | + | chr3_3:6469858-6469877 | Msa0439980:CDS | 40.0% |
| !! | TGTGTGTGTTTAGTCTTGTG+TGG | + | chr3_3:6469930-6469949 | Msa0439980:intron | 40.0% |
| !! | GTGTGTGTTTAGTCTTGTGT+GGG | + | chr3_3:6469931-6469950 | Msa0439980:intron | 40.0% |
| GAATTGTCAAATAGCGGCAA+TGG | - | chr3_3:6470499-6470518 | None:intergenic | 40.0% | |
| TTGCCGCTATTTGACAATTC+TGG | + | chr3_3:6470499-6470518 | Msa0439980:intron | 40.0% | |
| TGCCGCTATTTGACAATTCT+GGG | + | chr3_3:6470500-6470519 | Msa0439980:intron | 40.0% | |
| !!! | GTTTTTGAGTCCAAGAGCAA+GGG | - | chr3_3:6470581-6470600 | None:intergenic | 40.0% |
| CTCTTGGACTCAAAAACCAT+TGG | + | chr3_3:6470584-6470603 | Msa0439980:intron | 40.0% | |
| ! | GAAATGGGTTTATCTGTGCA+TGG | + | chr3_3:6470613-6470632 | Msa0439980:intron | 40.0% |
| GGACATAGTTCGAAGTTGAA+CGG | - | chr3_3:6470685-6470704 | None:intergenic | 40.0% | |
| ! | CATTGGTGTGAAAGTGTGAA+AGG | - | chr3_3:6470916-6470935 | None:intergenic | 40.0% |
| ! | GAAGATATGGTTTGAAGTGG+TGG | - | chr3_3:6471198-6471217 | None:intergenic | 40.0% |
| ! | ACTGATAGTTTGGCTAGTTC+TGG | - | chr3_3:6471351-6471370 | None:intergenic | 40.0% |
| TTGTTACATGCATTCGGTCA+AGG | + | chr3_3:6471449-6471468 | Msa0439980:intron | 40.0% | |
| CTCCAACAAATGCCTAGAAT+AGG | - | chr3_3:6471924-6471943 | None:intergenic | 40.0% | |
| TCAGAGGAACTAATGAACAC+AGG | + | chr3_3:6471977-6471996 | Msa0439980:CDS | 40.0% | |
| GCAATGTATTACTGGCATAG+AGG | + | chr3_3:6472246-6472265 | Msa0439980:intron | 40.0% | |
| ATGTATTACTGGCATAGAGG+CGG | + | chr3_3:6472249-6472268 | Msa0439980:intron | 40.0% | |
| GTGATCCAAAATTGATCAGC+AGG | + | chr3_3:6472334-6472353 | Msa0439980:intron | 40.0% | |
| ! | AGAACCCTGCTGATCAATTT+TGG | - | chr3_3:6472342-6472361 | None:intergenic | 40.0% |
| ! | ACAATACGTCCTGCAGTTTT+AGG | + | chr3_3:6472857-6472876 | Msa0439980:CDS | 40.0% |
| ! | CAATACGTCCTGCAGTTTTA+GGG | + | chr3_3:6472858-6472877 | Msa0439980:CDS | 40.0% |
| !! | AATACGTCCTGCAGTTTTAG+GGG | + | chr3_3:6472859-6472878 | Msa0439980:CDS | 40.0% |
| TTTCTTGGTATTGTACACCC+AGG | + | chr3_3:6472999-6473018 | Msa0439980:intron | 40.0% | |
| !!! | GTCTTTATTTTTCCTCAGGC+AGG | + | chr3_3:6473043-6473062 | Msa0439980:intron | 40.0% |
| !!! | CTTTATTTTTCCTCAGGCAG+GGG | + | chr3_3:6473045-6473064 | Msa0439980:intron | 40.0% |
| !!! | GCAGGGGCTTTGAATATTTT+AGG | + | chr3_3:6473061-6473080 | Msa0439980:intron | 40.0% |
| ! | TTTTGTCTCACTAACTGGAG+TGG | + | chr3_3:6473183-6473202 | Msa0439980:intron | 40.0% |
| AGTGGACCCATATTATTTGC+TGG | + | chr3_3:6473201-6473220 | Msa0439980:intron | 40.0% | |
| GTGGACCCATATTATTTGCT+GGG | + | chr3_3:6473202-6473221 | Msa0439980:intron | 40.0% | |
| ! | TGGACCCATATTATTTGCTG+GGG | + | chr3_3:6473203-6473222 | Msa0439980:intron | 40.0% |
| TAGGCCCCAGCAAATAATAT+GGG | - | chr3_3:6473210-6473229 | None:intergenic | 40.0% | |
| GTCTCAAGCTTAGGTAAAAG+AGG | + | chr3_3:6473287-6473306 | Msa0439980:intron | 40.0% | |
| TCAAGCTTAGGTAAAAGAGG+AGG | + | chr3_3:6473290-6473309 | Msa0439980:intron | 40.0% | |
| CAAGCTTAGGTAAAAGAGGA+GGG | + | chr3_3:6473291-6473310 | Msa0439980:intron | 40.0% | |
| ! | AAACTTTTCCATAGCTGCCA+GGG | - | chr3_3:6473327-6473346 | None:intergenic | 40.0% |
| ACAAGGATCAACAATGTAGC+TGG | + | chr3_3:6473362-6473381 | Msa0439980:intron | 40.0% | |
| AATTTACTTGTCCAGCGGTT+AGG | - | chr3_3:6473530-6473549 | None:intergenic | 40.0% | |
| TAACCGCTGGACAAGTAAAT+TGG | + | chr3_3:6473529-6473548 | Msa0439980:intron | 40.0% | |
| GTTCCAATTTACTTGTCCAG+CGG | - | chr3_3:6473535-6473554 | None:intergenic | 40.0% | |
| CTGGACAAGTAAATTGGAAC+AGG | + | chr3_3:6473535-6473554 | Msa0439980:intron | 40.0% | |
| GTTGTCCAAATGTCATAACC+TGG | - | chr3_3:6473903-6473922 | None:intergenic | 40.0% | |
| ACATTTGGACAACCACGTAT+TGG | + | chr3_3:6473910-6473929 | Msa0439980:CDS | 40.0% | |
| CATTTGGACAACCACGTATT+GGG | + | chr3_3:6473911-6473930 | Msa0439980:CDS | 40.0% | |
| AAAACACCATTCCCAATACG+TGG | - | chr3_3:6473925-6473944 | None:intergenic | 40.0% | |
| GCAAATGGGGAACAATATCA+TGG | - | chr3_3:6473999-6474018 | None:intergenic | 40.0% | |
| GTTATGCAACTTACCTCTCT+CGG | - | chr3_3:6474066-6474085 | None:intergenic | 40.0% | |
| ! | GAATCTTTGTTGTGGATTGC+AGG | + | chr3_3:6474652-6474671 | Msa0439980:intron | 40.0% |
| ! | TTTGTTGTGGATTGCAGGTA+TGG | + | chr3_3:6474657-6474676 | Msa0439980:intron | 40.0% |
| !! | GATTAGGTAGTCTTGTGTAC+AGG | + | chr3_3:6474693-6474712 | Msa0439980:CDS | 40.0% |
| AGGGTTGAGAAGATTTGTGA+TGG | + | chr3_3:6474713-6474732 | Msa0439980:CDS | 40.0% | |
| !! | GAGAAGATTTGTGATGGATC+TGG | + | chr3_3:6474719-6474738 | Msa0439980:CDS | 40.0% |
| !! | TTATGGTGTTGACATGGGAT+CGG | + | chr3_3:6474975-6474994 | Msa0439980:CDS | 40.0% |
| GAAGTTTCCTCTTGAATCTC+TGG | - | chr3_3:6475058-6475077 | None:intergenic | 40.0% | |
| GAGTAGAGAGTTTGACAATC+AGG | + | chr3_3:6475116-6475135 | Msa0439980:CDS | 40.0% | |
| CTTCACAGTCCTTTCAAATG+CGG | + | chr3_3:6475221-6475240 | Msa0439980:three_prime_UTR | 40.0% | |
| AGAATTTCATCAGCCGTAAC+TGG | + | chr3_3:6475248-6475267 | Msa0439980:three_prime_UTR | 40.0% | |
| ACGCAATCTTCTTCCAGTTA+CGG | - | chr3_3:6475264-6475283 | None:intergenic | 40.0% | |
| TGGAAGAAGATTGCGTGTAT+AGG | + | chr3_3:6475268-6475287 | Msa0439980:three_prime_UTR | 40.0% | |
| GAGAAGTTGAAGAGTCGTGA+AGG | - | chr3_3:6469577-6469596 | None:intergenic | 45.0% | |
| AACTTCTCTTCCCTTCTCAC+CGG | + | chr3_3:6469589-6469608 | Msa0439980:five_prime_UTR | 45.0% | |
| ! | TCGGGCACAATTAGAAGTGT+TGG | - | chr3_3:6470148-6470167 | None:intergenic | 45.0% |
| ATCACGTGTGTCTGTCACAT+CGG | - | chr3_3:6470167-6470186 | None:intergenic | 45.0% | |
| CGACATGATTGTGTAGTGTC+TGG | + | chr3_3:6470227-6470246 | Msa0439980:intron | 45.0% | |
| AGCGCTGTATTGCGAAAAAC+TGG | + | chr3_3:6470338-6470357 | Msa0439980:intron | 45.0% | |
| !!! | GGTTTTTGAGTCCAAGAGCA+AGG | - | chr3_3:6470582-6470601 | None:intergenic | 45.0% |
| TGGACTCAAAAACCATTGGC+AGG | + | chr3_3:6470588-6470607 | Msa0439980:intron | 45.0% | |
| GGACTCAAAAACCATTGGCA+GGG | + | chr3_3:6470589-6470608 | Msa0439980:intron | 45.0% | |
| AAACCATTGGCAGGGTGAAA+TGG | + | chr3_3:6470597-6470616 | Msa0439980:intron | 45.0% | |
| AACCATTGGCAGGGTGAAAT+GGG | + | chr3_3:6470598-6470617 | Msa0439980:intron | 45.0% | |
| CATTTGCAGAACTCAAGACC+AGG | + | chr3_3:6470946-6470965 | Msa0439980:intron | 45.0% | |
| ! | AGTCTTGTCAGAGGGTTGAT+CGG | + | chr3_3:6471109-6471128 | Msa0439980:intron | 45.0% |
| AAACCTACTTAAGCAAGGCC+AGG | - | chr3_3:6471170-6471189 | None:intergenic | 45.0% | |
| TTCGGTCAAGGCAAATCATG+TGG | + | chr3_3:6471461-6471480 | Msa0439980:intron | 45.0% | |
| TCGGTCAAGGCAAATCATGT+GGG | + | chr3_3:6471462-6471481 | Msa0439980:intron | 45.0% | |
| !! | GAAATAGGTCTGGTTCTTGC+AGG | + | chr3_3:6471518-6471537 | Msa0439980:intron | 45.0% |
| ! | TGATGTCGAGCATTGCTTAC+AGG | + | chr3_3:6471769-6471788 | Msa0439980:CDS | 45.0% |
| GATAATAGCACGCGGATCAT+CGG | - | chr3_3:6471950-6471969 | None:intergenic | 45.0% | |
| GAGGAACTAATGAACACAGG+TGG | + | chr3_3:6471980-6471999 | Msa0439980:intron | 45.0% | |
| TCCAGATATGGACGATGCAA+TGG | + | chr3_3:6472721-6472740 | Msa0439980:CDS | 45.0% | |
| ACCATTGCATCGTCCATATC+TGG | - | chr3_3:6472725-6472744 | None:intergenic | 45.0% | |
| CATTCTCTACAGGTACATCG+TGG | + | chr3_3:6472809-6472828 | Msa0439980:intron | 45.0% | |
| GTAGGCCCCAGCAAATAATA+TGG | - | chr3_3:6473211-6473230 | None:intergenic | 45.0% | |
| ! | TAGATGGTGGTCTCAAGCTT+AGG | + | chr3_3:6473278-6473297 | Msa0439980:intron | 45.0% |
| GTATTATACCCTGGCAGCTA+TGG | + | chr3_3:6473316-6473335 | Msa0439980:intron | 45.0% | |
| ! | CAAACTTTTCCATAGCTGCC+AGG | - | chr3_3:6473328-6473347 | None:intergenic | 45.0% |
| CTGGCAGCTATGGAAAAGTT+TGG | + | chr3_3:6473326-6473345 | Msa0439980:intron | 45.0% | |
| CAAGAAATGAACCTAACCGC+TGG | + | chr3_3:6473516-6473535 | Msa0439980:intron | 45.0% | |
| GTGTTCATGAGCTGATTGGT+TGG | - | chr3_3:6473665-6473684 | None:intergenic | 45.0% | |
| TCGAGTGTTCATGAGCTGAT+TGG | - | chr3_3:6473669-6473688 | None:intergenic | 45.0% | |
| !! | AAGTGCTGGTATGTCTTCTG+TGG | - | chr3_3:6474042-6474061 | None:intergenic | 45.0% |
| GAAAGCTGTATCCCCTTTGA+TGG | + | chr3_3:6474139-6474158 | Msa0439980:intron | 45.0% | |
| TAGGAACCTCTCACATTGCT+GGG | - | chr3_3:6474475-6474494 | None:intergenic | 45.0% | |
| ATAGGAACCTCTCACATTGC+TGG | - | chr3_3:6474476-6474495 | None:intergenic | 45.0% | |
| ! | CTATCAGCTTGTGTGTTGCT+TGG | + | chr3_3:6474507-6474526 | Msa0439980:intron | 45.0% |
| !! | GATTTGTGATGGATCTGGTG+AGG | + | chr3_3:6474724-6474743 | Msa0439980:CDS | 45.0% |
| TTGACTAACCTGCTGCAAGA+TGG | - | chr3_3:6474752-6474771 | None:intergenic | 45.0% | |
| TGAAAACTTTGCCACTGCAG+TGG | + | chr3_3:6474806-6474825 | Msa0439980:intron | 45.0% | |
| ACTAGTAGAATCCACTGCAG+TGG | - | chr3_3:6474820-6474839 | None:intergenic | 45.0% | |
| ! | CTTTTTGCAGGTCAGTGAGT+GGG | + | chr3_3:6474926-6474945 | Msa0439980:intron | 45.0% |
| ATTCTTCGGCCGCATTTGAA+AGG | - | chr3_3:6475233-6475252 | None:intergenic | 45.0% | |
| !! | GAAAAAATAATTAAAATAAA+AGG | - | chr3_3:6470706-6470725 | None:intergenic | 5.0% |
| !! | ATTATTAAATTATTTATGTT+AGG | - | chr3_3:6471267-6471286 | None:intergenic | 5.0% |
| !! | ATAAATAATTTAATAATTGA+GGG | + | chr3_3:6471270-6471289 | Msa0439980:intron | 5.0% |
| !! | TATTTAATAAAATTTAACAT+CGG | - | chr3_3:6475419-6475438 | None:intergenic | 5.0% |
| ACTTCTCTTCCCTTCTCACC+GGG | + | chr3_3:6469590-6469609 | Msa0439980:five_prime_UTR | 50.0% | |
| CAGAGATTTCCCGGTGAGAA+GGG | - | chr3_3:6469602-6469621 | None:intergenic | 50.0% | |
| TTCTCACCGGGAAATCTCTG+CGG | + | chr3_3:6469602-6469621 | Msa0439980:five_prime_UTR | 50.0% | |
| !! | GTTGGTGCTACAGAGATGCT+AGG | - | chr3_3:6470130-6470149 | None:intergenic | 50.0% |
| TCACGTGTGTCTGTCACATC+GGG | - | chr3_3:6470166-6470185 | None:intergenic | 50.0% | |
| ATTGTGTAGTGTCTGGTCCC+TGG | + | chr3_3:6470234-6470253 | Msa0439980:intron | 50.0% | |
| TACAGCTGTTCCCTTGCTCT+TGG | + | chr3_3:6470568-6470587 | Msa0439980:intron | 50.0% | |
| AACCCATTTCACCCTGCCAA+TGG | - | chr3_3:6470603-6470622 | None:intergenic | 50.0% | |
| ! | GTCTTGTCAGAGGGTTGATC+GGG | + | chr3_3:6471110-6471129 | Msa0439980:intron | 50.0% |
| !! | CAACCTGGCCTTGCTTAAGT+AGG | + | chr3_3:6471164-6471183 | Msa0439980:intron | 50.0% |
| ! | ACTTGGACGTGCTCTAGATG+TGG | + | chr3_3:6471570-6471589 | Msa0439980:CDS | 50.0% |
| TAGATGTGGCGACTTGACCA+AGG | + | chr3_3:6471584-6471603 | Msa0439980:CDS | 50.0% | |
| ! | GTCGAGCATTGCTTACAGGT+CGG | + | chr3_3:6471773-6471792 | Msa0439980:intron | 50.0% |
| TCAACAGCCCCTAAAACTGC+AGG | - | chr3_3:6472869-6472888 | None:intergenic | 50.0% | |
| GCGTTAGGACATTCTATGGG+CGG | + | chr3_3:6472926-6472945 | Msa0439980:CDS | 50.0% | |
| ACATTCTATGGGCGGAGCAA+TGG | + | chr3_3:6472934-6472953 | Msa0439980:CDS | 50.0% | |
| ATATTCAAAGCCCCTGCCTG+AGG | - | chr3_3:6473058-6473077 | None:intergenic | 50.0% | |
| AGGAGGGCTGTATTATACCC+TGG | + | chr3_3:6473307-6473326 | Msa0439980:intron | 50.0% | |
| GGACAACCACGTATTGGGAA+TGG | + | chr3_3:6473916-6473935 | Msa0439980:CDS | 50.0% | |
| ATACCAGCACTTTCCGAGAG+AGG | + | chr3_3:6474050-6474069 | Msa0439980:CDS | 50.0% | |
| ! | TTACCTCTCTCGGAAAGTGC+TGG | - | chr3_3:6474056-6474075 | None:intergenic | 50.0% |
| AAGAGTGAGCCATGAGCAAC+AGG | - | chr3_3:6474317-6474336 | None:intergenic | 50.0% | |
| TCAGCAGCTATATGGAGGGT+TGG | - | chr3_3:6474892-6474911 | None:intergenic | 50.0% | |
| ! | GCTTTTTGCAGGTCAGTGAG+TGG | + | chr3_3:6474925-6474944 | Msa0439980:intron | 50.0% |
| AGCAGCACCAGAGATTCAAG+AGG | + | chr3_3:6475048-6475067 | Msa0439980:CDS | 50.0% | |
| GCAGAGATTTCCCGGTGAGA+AGG | - | chr3_3:6469603-6469622 | None:intergenic | 55.0% | |
| CGCAAGATGACTCGTATGCC+TGG | - | chr3_3:6470967-6470986 | None:intergenic | 55.0% | |
| GCTATGAGCTGGTCAGGATG+AGG | - | chr3_3:6471329-6471348 | None:intergenic | 55.0% | |
| ! | GTTCTGGCTATGAGCTGGTC+AGG | - | chr3_3:6471335-6471354 | None:intergenic | 55.0% |
| !! | GGCTAGTTCTGGCTATGAGC+TGG | - | chr3_3:6471340-6471359 | None:intergenic | 55.0% |
| ! | GGAGCAATGGCTGCGTTTTG+TGG | + | chr3_3:6472947-6472966 | Msa0439980:CDS | 55.0% |
| TTGCTGGGTGTGCAGAGAGT+TGG | - | chr3_3:6474460-6474479 | None:intergenic | 55.0% | |
| TGCACACCCAGCAATGTGAG+AGG | + | chr3_3:6474466-6474485 | Msa0439980:intron | 55.0% | |
| GTGAGGATCCATCTTGCAGC+AGG | + | chr3_3:6474741-6474760 | Msa0439980:CDS | 55.0% | |
| TCACCGGGAAATCTCTGCGG+CGG | + | chr3_3:6469605-6469624 | Msa0439980:five_prime_UTR | 60.0% | |
| TCGCCGCCGCAGAGATTTCC+CGG | - | chr3_3:6469611-6469630 | None:intergenic | 65.0% | |
| GGAAATCTCTGCGGCGGCGA+CGG | + | chr3_3:6469611-6469630 | Msa0439980:five_prime_UTR | 65.0% | |
| ! | CTCTGCGGCGGCGACGGCGA+CGG | + | chr3_3:6469617-6469636 | Msa0439980:five_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 6469546 | 6475508 | 6469546 | ID=Msa0439980;Name=Msa0439980 |
| chr3_3 | mRNA | 6469546 | 6475508 | 6469546 | ID=Msa0439980-mRNA-1;Parent=Msa0439980;Name=Msa0439980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=154|1|1|1|0.8|0.72|11|347|358 |
| chr3_3 | exon | 6469546 | 6469662 | 6469546 | ID=Msa0439980-mRNA-1:exon:1327;Parent=Msa0439980-mRNA-1 |
| chr3_3 | exon | 6469773 | 6469879 | 6469773 | ID=Msa0439980-mRNA-1:exon:1328;Parent=Msa0439980-mRNA-1 |
| chr3_3 | exon | 6470955 | 6471034 | 6470955 | ID=Msa0439980-mRNA-1:exon:1329;Parent=Msa0439980-mRNA-1 |
| chr3_3 | exon | 6471540 | 6471605 | 6471540 | ID=Msa0439980-mRNA-1:exon:1330;Parent=Msa0439980-mRNA-1 |
| chr3_3 | exon | 6471743 | 6471790 | 6471743 | ID=Msa0439980-mRNA-1:exon:1331;Parent=Msa0439980-mRNA-1 |
| chr3_3 | exon | 6471931 | 6471998 | 6471931 | ID=Msa0439980-mRNA-1:exon:1332;Parent=Msa0439980-mRNA-1 |
| chr3_3 | exon | 6472670 | 6472742 | 6472670 | ID=Msa0439980-mRNA-1:exon:1333;Parent=Msa0439980-mRNA-1 |
| chr3_3 | exon | 6472821 | 6472982 | 6472821 | ID=Msa0439980-mRNA-1:exon:1334;Parent=Msa0439980-mRNA-1 |
| chr3_3 | exon | 6473877 | 6474071 | 6473877 | ID=Msa0439980-mRNA-1:exon:1335;Parent=Msa0439980-mRNA-1 |
| chr3_3 | exon | 6474674 | 6474762 | 6474674 | ID=Msa0439980-mRNA-1:exon:1336;Parent=Msa0439980-mRNA-1 |
| chr3_3 | exon | 6474936 | 6475508 | 6474936 | ID=Msa0439980-mRNA-1:exon:1337;Parent=Msa0439980-mRNA-1 |
| chr3_3 | five_prime_UTR | 6469546 | 6469662 | 6469546 | ID=Msa0439980-mRNA-1:five_prime_utr;Parent=Msa0439980-mRNA-1 |
| chr3_3 | five_prime_UTR | 6469773 | 6469809 | 6469773 | ID=Msa0439980-mRNA-1:five_prime_utr;Parent=Msa0439980-mRNA-1 |
| chr3_3 | CDS | 6469810 | 6469879 | 6469810 | ID=Msa0439980-mRNA-1:cds;Parent=Msa0439980-mRNA-1 |
| chr3_3 | CDS | 6470955 | 6471034 | 6470955 | ID=Msa0439980-mRNA-1:cds;Parent=Msa0439980-mRNA-1 |
| chr3_3 | CDS | 6471540 | 6471605 | 6471540 | ID=Msa0439980-mRNA-1:cds;Parent=Msa0439980-mRNA-1 |
| chr3_3 | CDS | 6471743 | 6471790 | 6471743 | ID=Msa0439980-mRNA-1:cds;Parent=Msa0439980-mRNA-1 |
| chr3_3 | CDS | 6471931 | 6471998 | 6471931 | ID=Msa0439980-mRNA-1:cds;Parent=Msa0439980-mRNA-1 |
| chr3_3 | CDS | 6472670 | 6472742 | 6472670 | ID=Msa0439980-mRNA-1:cds;Parent=Msa0439980-mRNA-1 |
| chr3_3 | CDS | 6472821 | 6472982 | 6472821 | ID=Msa0439980-mRNA-1:cds;Parent=Msa0439980-mRNA-1 |
| chr3_3 | CDS | 6473877 | 6474071 | 6473877 | ID=Msa0439980-mRNA-1:cds;Parent=Msa0439980-mRNA-1 |
| chr3_3 | CDS | 6474674 | 6474762 | 6474674 | ID=Msa0439980-mRNA-1:cds;Parent=Msa0439980-mRNA-1 |
| chr3_3 | CDS | 6474936 | 6475161 | 6474936 | ID=Msa0439980-mRNA-1:cds;Parent=Msa0439980-mRNA-1 |
| chr3_3 | three_prime_UTR | 6475162 | 6475508 | 6475162 | ID=Msa0439980-mRNA-1:three_prime_utr;Parent=Msa0439980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
