AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1316440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316440 MtrunA17_Chr8g0346531 100.000 157 0 0 1 157 1 157 1.18e-115 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316440 AT1G01230.1 84.713 157 24 0 1 157 1 157 6.02e-100 284
Msa1316440 AT5G42000.1 84.416 154 24 0 4 157 1 154 4.51e-99 282
Msa1316440 AT5G42000.2 85.321 109 16 0 4 112 1 109 1.05e-68 203

Find 54 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCAAATTATGCAAAATT+TGG 0.095930 8_4:-16739726 None:intergenic
CTTTCTTCCTTCTCTTGTTC+TGG 0.172031 8_4:+16745347 Msa1316440:three_prime_UTR
CTTCTAAGCTTCTTCTTCTA+AGG 0.198036 8_4:+16745465 Msa1316440:three_prime_UTR
AAACTTGATGAATTTGATTT+TGG 0.213568 8_4:-16739640 None:intergenic
ATTGAATCAAAATCAAAATA+AGG 0.230522 8_4:+16739562 Msa1316440:five_prime_UTR
TCTGTCTTTGGTTGTTCTCC+TGG 0.279321 8_4:+16739871 Msa1316440:CDS
ATCCTAACCTTGTGCATGTT+GGG 0.323712 8_4:-16745243 None:intergenic
TATTCAACGTTTCAATCAAA+AGG 0.343955 8_4:+16739688 Msa1316440:five_prime_UTR
ATGCACAAGGTTAGGATATT+CGG 0.354060 8_4:+16745249 Msa1316440:CDS
GTTGTTCTCCTGGGATTGCT+TGG 0.366309 8_4:+16739881 Msa1316440:CDS
AACTCCATTTGCAGATGATC+AGG 0.373395 8_4:+16741649 Msa1316440:CDS
GGTTTACGTATCCTGGTGTT+TGG 0.387034 8_4:+16739803 Msa1316440:CDS
CTGTCTTTGGTTGTTCTCCT+GGG 0.396410 8_4:+16739872 Msa1316440:CDS
TGCCACCTGCGGATCTGAAC+AGG 0.406149 8_4:+16739770 Msa1316440:CDS
GAAAGCAGCTCACTCGTAAC+AGG 0.409598 8_4:+16741714 Msa1316440:CDS
CTAAGGCATTAATGAAAGAA+AGG 0.412123 8_4:-16745596 None:intergenic
TTTGTTTGTCCATGAAACTA+TGG 0.427663 8_4:+16745298 Msa1316440:three_prime_UTR
TTGAATCAAAATCAAAATAA+GGG 0.429578 8_4:+16739563 Msa1316440:five_prime_UTR
TAAAGCACCGTTATAATCTC+TGG 0.431346 8_4:-16745549 None:intergenic
TGAGCTAAAATTGATTTGCT+TGG 0.434788 8_4:-16739471 None:intergenic
TACTAACAACCATAGTTTCA+TGG 0.442901 8_4:-16745307 None:intergenic
TAGCAACCTTTGTATAGAAA+AGG 0.455565 8_4:+16745378 Msa1316440:three_prime_UTR
TCCCCAACATGCACAAGGTT+AGG 0.468126 8_4:+16745241 Msa1316440:CDS
ATTCAACGTTTCAATCAAAA+GGG 0.484393 8_4:+16739689 Msa1316440:five_prime_UTR
GTGTTCCTGTTCAGATCCGC+AGG 0.489888 8_4:-16739775 None:intergenic
ACAGAATGGTTTACGTATCC+TGG 0.503073 8_4:+16739796 Msa1316440:CDS
TATCCTAACCTTGTGCATGT+TGG 0.507851 8_4:-16745244 None:intergenic
ATCCCCTGATCATCTGCAAA+TGG 0.508493 8_4:-16741653 None:intergenic
TAGATTGACATGGTGGGAGC+AGG 0.523259 8_4:+16741682 Msa1316440:CDS
ATGGAGTTCCTTTCTTCCAG+TGG 0.534161 8_4:-16741634 None:intergenic
ATCTGAACAGGAACACAGAA+TGG 0.543897 8_4:+16739782 Msa1316440:CDS
CCATGATCCATGAAAAGAAG+AGG 0.551222 8_4:-16739843 None:intergenic
ACTCCATTTGCAGATGATCA+GGG 0.556480 8_4:+16741650 Msa1316440:CDS
ACCGTGTTGAAGAACAGCAT+TGG 0.557220 8_4:-16745189 None:intergenic
ACAATAGTCCAAGCAATCCC+AGG 0.557415 8_4:-16739889 None:intergenic
CGCAACAACTAGCACAATCA+CGG 0.570087 8_4:-16745214 None:intergenic
TCCTAACCTTGTGCATGTTG+GGG 0.573459 8_4:-16745242 None:intergenic
TGGTGGGAGCAGGTCGACAA+TGG 0.574609 8_4:+16741692 Msa1316440:CDS
ATATATGTTGTCCAAACACC+AGG 0.585932 8_4:-16739814 None:intergenic
AGAAAAGGCAGAACTGTGGA+AGG 0.593266 8_4:+16745393 Msa1316440:three_prime_UTR
CTCATAGTCAGTTGTGTGTG+AGG 0.593542 8_4:-16745163 None:intergenic
AGGAGAACTTACAGAACCAA+AGG 0.601770 8_4:-16741755 None:intergenic
AGAGAAGGAAGAAAGAAGAG+AGG 0.610698 8_4:-16745339 None:intergenic
TCCAATGCTGTTCTTCAACA+CGG 0.613434 8_4:+16745188 Msa1316440:CDS
CTCCATTTGCAGATGATCAG+GGG 0.621400 8_4:+16741651 Msa1316440:CDS
TCTACAATAGATTGACATGG+TGG 0.624727 8_4:+16741675 Msa1316440:CDS
GAAGTTCCCCAACATGCACA+AGG 0.633964 8_4:+16745236 Msa1316440:CDS
ACGTGTACCAGAGATTATAA+CGG 0.638339 8_4:+16745542 Msa1316440:three_prime_UTR
TGTGTCTGTGAAAATGTGAA+AGG 0.645199 8_4:-16739519 None:intergenic
CTACAATAGATTGACATGGT+GGG 0.646152 8_4:+16741676 Msa1316440:CDS
TTCCTGTTCAGATCCGCAGG+TGG 0.663476 8_4:-16739772 None:intergenic
TGTCAAAGCTGTGCCACCTG+CGG 0.675301 8_4:+16739759 Msa1316440:CDS
GTATAGAAAAGGCAGAACTG+TGG 0.687604 8_4:+16745389 Msa1316440:three_prime_UTR
GGATCTACAATAGATTGACA+TGG 0.711938 8_4:+16741672 Msa1316440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAAAAAACAAAATAAA+AGG - chr8_4:16739958-16739977 None:intergenic 10.0%
!!! CAGTTTTTATTTTATTTTTT+AGG + chr8_4:16741831-16741850 Msa1316440:intron 10.0%
!! ATTGAATCAAAATCAAAATA+AGG + chr8_4:16739562-16739581 Msa1316440:five_prime_UTR 15.0%
!! TTGAATCAAAATCAAAATAA+GGG + chr8_4:16739563-16739582 Msa1316440:five_prime_UTR 15.0%
!! AAAACAAAATAAAAGGAAAA+GGG - chr8_4:16739951-16739970 None:intergenic 15.0%
!! AAAAACAAAATAAAAGGAAA+AGG - chr8_4:16739952-16739971 None:intergenic 15.0%
!! ATTTAGAAAAGATAAAATAG+AGG + chr8_4:16740510-16740529 Msa1316440:intron 15.0%
!! TAAAATAAAAACTGTGATAT+CGG - chr8_4:16741825-16741844 None:intergenic 15.0%
!! TATAATAGCTATAATATAGT+TGG + chr8_4:16742180-16742199 Msa1316440:intron 15.0%
!!! TTTTTTCTAGCAAATATTTA+AGG - chr8_4:16742303-16742322 None:intergenic 15.0%
!! AAAATTTAAGCAGATAAAAA+TGG + chr8_4:16742362-16742381 Msa1316440:intron 15.0%
!!! TTTGTTCATAGATATTTTAA+AGG + chr8_4:16743230-16743249 Msa1316440:intron 15.0%
!!! TTGTTCATAGATATTTTAAA+GGG + chr8_4:16743231-16743250 Msa1316440:intron 15.0%
!!! CATTTAAAACATTTAGTATT+AGG - chr8_4:16743287-16743306 None:intergenic 15.0%
!!! CTAATACTAAATGTTTTAAA+TGG + chr8_4:16743285-16743304 Msa1316440:intron 15.0%
!! ATTGTAACTAAAAATGATAT+GGG + chr8_4:16743312-16743331 Msa1316440:intron 15.0%
!! AAATAATCATTATAAAAACC+AGG - chr8_4:16743360-16743379 None:intergenic 15.0%
!! TTATAATGATTATTTATCGA+AGG + chr8_4:16743365-16743384 Msa1316440:intron 15.0%
!! CTAAAAACTTGTATAAAAAA+TGG + chr8_4:16743542-16743561 Msa1316440:intron 15.0%
!! AAGAATTATAACAATTGATT+CGG + chr8_4:16743811-16743830 Msa1316440:intron 15.0%
!! AAAGTAACATATATAATGTA+CGG + chr8_4:16744609-16744628 Msa1316440:intron 15.0%
!!! GTAAATTTTGGTATTAATAA+TGG - chr8_4:16744995-16745014 None:intergenic 15.0%
!!! AAACTTGATGAATTTGATTT+TGG - chr8_4:16739643-16739662 None:intergenic 20.0%
!! AAACTACAAAATTTCCAAAT+AGG - chr8_4:16740081-16740100 None:intergenic 20.0%
!!! TTTGGAAATTTTGTAGTTTA+AGG + chr8_4:16740082-16740101 Msa1316440:intron 20.0%
!! ACCAAAAATAATTTGAGAAA+AGG + chr8_4:16740201-16740220 Msa1316440:intron 20.0%
!!! TCCTTTTCTCAAATTATTTT+TGG - chr8_4:16740205-16740224 None:intergenic 20.0%
!! TATTTATTGAGTCATGATTT+AGG + chr8_4:16740415-16740434 Msa1316440:intron 20.0%
!! ATCTTGTGTTAATGATAAAT+AGG + chr8_4:16740469-16740488 Msa1316440:intron 20.0%
!!! TCATTTTCTTAAACTATTAC+TGG - chr8_4:16740628-16740647 None:intergenic 20.0%
!!! TCATTTTCTTAAACTAATAC+TGG - chr8_4:16740695-16740714 None:intergenic 20.0%
!!! GTATTAGTTTAAGAAAATGA+AGG + chr8_4:16740695-16740714 Msa1316440:intron 20.0%
!! TCTATTAGAAATAAATGATC+CGG - chr8_4:16743204-16743223 None:intergenic 20.0%
!!! TGTTCATAGATATTTTAAAG+GGG + chr8_4:16743232-16743251 Msa1316440:intron 20.0%
!! GATTGTAACTAAAAATGATA+TGG + chr8_4:16743311-16743330 Msa1316440:intron 20.0%
!! TTGTAACTAAAAATGATATG+GGG + chr8_4:16743313-16743332 Msa1316440:intron 20.0%
!! GAAAAAGTCAAATCAAAATT+TGG + chr8_4:16743564-16743583 Msa1316440:intron 20.0%
!! TTAGTTATCTACATTATTTG+TGG + chr8_4:16743625-16743644 Msa1316440:intron 20.0%
!! TTGATTGAAGAAATATTGTT+AGG + chr8_4:16743734-16743753 Msa1316440:intron 20.0%
!!! ATCATTTATAATTTGCACTT+CGG + chr8_4:16743899-16743918 Msa1316440:intron 20.0%
!!! TTTTTTTTTGTTTCTCCTTT+GGG - chr8_4:16743993-16744012 None:intergenic 20.0%
!!! TTTTTTTTTTGTTTCTCCTT+TGG - chr8_4:16743994-16744013 None:intergenic 20.0%
!!! GGTATTTAATTTATATTGGT+AGG + chr8_4:16744205-16744224 Msa1316440:intron 20.0%
!!! GATTTTTTCTTTTCTTTTCT+TGG + chr8_4:16744260-16744279 Msa1316440:intron 20.0%
!!! ATCTAGATTTAAGTTATTCT+TGG - chr8_4:16744765-16744784 None:intergenic 20.0%
!!! ATTTTGGTATTAATAATGGT+TGG - chr8_4:16744991-16745010 None:intergenic 20.0%
!!! TGTTTAAGAGTTGTAAATTT+TGG - chr8_4:16745007-16745026 None:intergenic 20.0%
!!! TAAATAAAGAATGCTTTGTT+CGG + chr8_4:16745028-16745047 Msa1316440:intron 20.0%
!! TTACTAAATGACTTATTTGA+AGG + chr8_4:16745090-16745109 Msa1316440:intron 20.0%
!! AGAAGAAGAAAAAAAATAGT+TGG - chr8_4:16745442-16745461 None:intergenic 20.0%
!! AAAATAAGGGTTACGTTTTT+GGG + chr8_4:16739576-16739595 Msa1316440:five_prime_UTR 25.0%
!!! TTGATGAATTTGATTTTGGT+GGG - chr8_4:16739639-16739658 None:intergenic 25.0%
! TATTCAACGTTTCAATCAAA+AGG + chr8_4:16739688-16739707 Msa1316440:five_prime_UTR 25.0%
! ATTCAACGTTTCAATCAAAA+GGG + chr8_4:16739689-16739708 Msa1316440:five_prime_UTR 25.0%
! CCATCAAATTATGCAAAATT+TGG - chr8_4:16739729-16739748 None:intergenic 25.0%
!! CCAAATTTTGCATAATTTGA+TGG + chr8_4:16739726-16739745 Msa1316440:exon 25.0%
!!! TTTGAGTTATGTTGTTTTGA+TGG + chr8_4:16740134-16740153 Msa1316440:intron 25.0%
! TATCTTGAAGTTAATTGTGA+CGG + chr8_4:16740370-16740389 Msa1316440:intron 25.0%
! GGAAGACATATATAAATTAG+AGG + chr8_4:16740544-16740563 Msa1316440:intron 25.0%
!! TAAATTAGAGGTATGCTATT+AGG + chr8_4:16740556-16740575 Msa1316440:intron 25.0%
! TTAAATGTAATCACATGTGT+CGG + chr8_4:16740721-16740740 Msa1316440:intron 25.0%
! TTGATATGATTATGATTTCG+CGG + chr8_4:16741315-16741334 Msa1316440:intron 25.0%
!!! TTCATCTTCCTTTGATTTTT+TGG + chr8_4:16741371-16741390 Msa1316440:intron 25.0%
!!! TCATCTTCCTTTGATTTTTT+GGG + chr8_4:16741372-16741391 Msa1316440:intron 25.0%
! CATAGTCAAACATAATAACA+AGG + chr8_4:16741418-16741437 Msa1316440:intron 25.0%
!! TTTTATAAAAGCTACTTGAC+TGG + chr8_4:16741492-16741511 Msa1316440:intron 25.0%
! TTTATAAAAGCTACTTGACT+GGG + chr8_4:16741493-16741512 Msa1316440:intron 25.0%
!! GTTAATTTGATCTCTTTACA+TGG + chr8_4:16741567-16741586 Msa1316440:intron 25.0%
! ATATAAACACTAGCAGTAAT+TGG + chr8_4:16741866-16741885 Msa1316440:intron 25.0%
!! AAATAAATGTCACTTCTATG+AGG + chr8_4:16742017-16742036 Msa1316440:intron 25.0%
! TACTCACAAGTCAATTAAAT+TGG - chr8_4:16742063-16742082 None:intergenic 25.0%
! ATAGCTATAATATAGTTGGT+AGG + chr8_4:16742184-16742203 Msa1316440:intron 25.0%
!!! TATAATATAGTTGGTAGGTT+GGG + chr8_4:16742189-16742208 Msa1316440:intron 25.0%
!!! CAGAAGTTATGTTACTTTAA+AGG + chr8_4:16742238-16742257 Msa1316440:intron 25.0%
! TTTAAAGGTTTGTATCTGTA+TGG + chr8_4:16742253-16742272 Msa1316440:intron 25.0%
! CTATGTATGATATAAATACC+AGG - chr8_4:16742426-16742445 None:intergenic 25.0%
! TGTATTGAACCAAACTAAAT+CGG - chr8_4:16742953-16742972 None:intergenic 25.0%
!! AATTTTATCACTTATTCCCA+AGG + chr8_4:16743139-16743158 Msa1316440:intron 25.0%
!!! GTTCATAGATATTTTAAAGG+GGG + chr8_4:16743233-16743252 Msa1316440:intron 25.0%
! GAAAGTAATAAATGATAACC+TGG + chr8_4:16743339-16743358 Msa1316440:intron 25.0%
! AAAGTCAAATCAAAATTTGG+AGG + chr8_4:16743567-16743586 Msa1316440:intron 25.0%
!!! TCATAACCAGAGTTTTTTAA+GGG - chr8_4:16743681-16743700 None:intergenic 25.0%
!! CTTTTGTAAACTTTCTGATA+AGG + chr8_4:16744057-16744076 Msa1316440:intron 25.0%
!! CGTCGGTATTTAATTTATAT+TGG + chr8_4:16744201-16744220 Msa1316440:intron 25.0%
! AAGAAAAGAAAAAATCATGC+TGG - chr8_4:16744256-16744275 None:intergenic 25.0%
! TAAAAACATGCAATACGTTA+TGG - chr8_4:16744327-16744346 None:intergenic 25.0%
! TTGGATATTGAACTGTAAAA+AGG + chr8_4:16744499-16744518 Msa1316440:intron 25.0%
! GTAAATAGTCAAAACATGTA+TGG + chr8_4:16744521-16744540 Msa1316440:intron 25.0%
!!! TCTATCATTTTTTCCTACAT+GGG - chr8_4:16744641-16744660 None:intergenic 25.0%
!!! ATCTATCATTTTTTCCTACA+TGG - chr8_4:16744642-16744661 None:intergenic 25.0%
! AAATGATAGATTGTTGTCTA+AGG + chr8_4:16744651-16744670 Msa1316440:intron 25.0%
! AAATAGACTATTACAATCCT+TGG + chr8_4:16744691-16744710 Msa1316440:intron 25.0%
!!! AGTGAGCTTACAAATTTTTT+TGG + chr8_4:16744888-16744907 Msa1316440:intron 25.0%
!! AGTTTAAAAGTCTAGTTTCT+TGG - chr8_4:16744918-16744937 None:intergenic 25.0%
!! AATATTTTCTTGTCATTGAC+AGG + chr8_4:16745130-16745149 Msa1316440:intron 25.0%
!! TCTTGTATAAGAGTTTTCTA+AGG - chr8_4:16745616-16745635 None:intergenic 25.0%
!! TGAGCTAAAATTGATTTGCT+TGG - chr8_4:16739474-16739493 None:intergenic 30.0%
! CAAAATAAGGGTTACGTTTT+TGG + chr8_4:16739575-16739594 Msa1316440:five_prime_UTR 30.0%
!! CTTGATGAATTTGATTTTGG+TGG - chr8_4:16739640-16739659 None:intergenic 30.0%
TAATCATCAAAGGACAAATC+AGG - chr8_4:16740058-16740077 None:intergenic 30.0%
! TCCTTTGATGATTACCTATT+TGG + chr8_4:16740064-16740083 Msa1316440:intron 30.0%
TCCAAATAGGTAATCATCAA+AGG - chr8_4:16740068-16740087 None:intergenic 30.0%
!!! TATTTTTGGTATCGACATGT+TGG - chr8_4:16740191-16740210 None:intergenic 30.0%
ACTGTATGTATGAGTTTCAT+GGG + chr8_4:16740322-16740341 Msa1316440:intron 30.0%
GTGTTAATGATAAATAGGTC+AGG + chr8_4:16740474-16740493 Msa1316440:intron 30.0%
TTAAATGTAACCACATGTGT+CGG + chr8_4:16740654-16740673 Msa1316440:intron 30.0%
ATTTAGTAAAGCTGACACTT+TGG - chr8_4:16740784-16740803 None:intergenic 30.0%
ACTAAATCCTAATGTGCTAT+TGG + chr8_4:16740797-16740816 Msa1316440:intron 30.0%
TTTACTTCCAATAGCACATT+AGG - chr8_4:16740807-16740826 None:intergenic 30.0%
AGTTAACGTAAACTAGCAAT+TGG - chr8_4:16740879-16740898 None:intergenic 30.0%
TAGTTTACGTTAACTGCAAT+TGG + chr8_4:16740884-16740903 Msa1316440:intron 30.0%
TAGAACATTGCAAAGATGAT+GGG - chr8_4:16741168-16741187 None:intergenic 30.0%
TTAGAACATTGCAAAGATGA+TGG - chr8_4:16741169-16741188 None:intergenic 30.0%
! CTTTAGAAGTACACTAGTTT+AGG + chr8_4:16741218-16741237 Msa1316440:intron 30.0%
!! TTTAGGAGCATTATACTTTG+TGG + chr8_4:16741235-16741254 Msa1316440:intron 30.0%
TAAACTACTCCTAGTTAACA+AGG - chr8_4:16741266-16741285 None:intergenic 30.0%
TCATAATCATATCAAGTACC+TGG - chr8_4:16741310-16741329 None:intergenic 30.0%
AATGCTACATGAGCTAAAAT+GGG - chr8_4:16741447-16741466 None:intergenic 30.0%
AAATGCTACATGAGCTAAAA+TGG - chr8_4:16741448-16741467 None:intergenic 30.0%
!!! TAACATATCACTTTTTCCAC+TGG + chr8_4:16741618-16741637 Msa1316440:CDS 30.0%
! TTTTCGTCTGTATCTTAATG+TGG + chr8_4:16741981-16742000 Msa1316440:intron 30.0%
TTTCTGTCTCTTCTTATATG+TGG + chr8_4:16742101-16742120 Msa1316440:intron 30.0%
TTCTGTCTCTTCTTATATGT+GGG + chr8_4:16742102-16742121 Msa1316440:intron 30.0%
! AATTCTTTTCGCAACTAGAA+GGG - chr8_4:16742151-16742170 None:intergenic 30.0%
! AAATTCTTTTCGCAACTAGA+AGG - chr8_4:16742152-16742171 None:intergenic 30.0%
!! CTATAATATAGTTGGTAGGT+TGG + chr8_4:16742188-16742207 Msa1316440:intron 30.0%
TTTGATTGTTAGCGAAAGAA+AGG + chr8_4:16742328-16742347 Msa1316440:intron 30.0%
TTGATTGTTAGCGAAAGAAA+GGG + chr8_4:16742329-16742348 Msa1316440:intron 30.0%
GATATATAACCAGCATGATT+GGG - chr8_4:16742404-16742423 None:intergenic 30.0%
!!! GAATGCAGTGTTTTAAAAAC+CGG + chr8_4:16742460-16742479 Msa1316440:intron 30.0%
!!! AATGCAGTGTTTTAAAAACC+GGG + chr8_4:16742461-16742480 Msa1316440:intron 30.0%
ATTTCATTGTTGCACACTAT+TGG - chr8_4:16742672-16742691 None:intergenic 30.0%
ACGGCAAGTATTAATTAGAT+TGG - chr8_4:16742871-16742890 None:intergenic 30.0%
!!! TCAAGCAGTGTTTTTAAAAC+CGG - chr8_4:16743093-16743112 None:intergenic 30.0%
AAGGGGGATTCTAAATTATT+TGG + chr8_4:16743249-16743268 Msa1316440:intron 30.0%
AGGGGGATTCTAAATTATTT+GGG + chr8_4:16743250-16743269 Msa1316440:intron 30.0%
TAGTTTCCCTTAAAAAACTC+TGG + chr8_4:16743672-16743691 Msa1316440:intron 30.0%
!!! CTCATAACCAGAGTTTTTTA+AGG - chr8_4:16743682-16743701 None:intergenic 30.0%
CTTAAAAAACTCTGGTTATG+AGG + chr8_4:16743680-16743699 Msa1316440:intron 30.0%
AAAAGAACCTGAATCTCAAA+GGG - chr8_4:16744042-16744061 None:intergenic 30.0%
TTGTAAACTTTCTGATAAGG+TGG + chr8_4:16744060-16744079 Msa1316440:intron 30.0%
TGTAAACTTTCTGATAAGGT+GGG + chr8_4:16744061-16744080 Msa1316440:intron 30.0%
! ATTAGACTTGTGTCATTCTA+TGG + chr8_4:16744473-16744492 Msa1316440:intron 30.0%
! TTGTGTCATTCTATGGTATT+TGG + chr8_4:16744480-16744499 Msa1316440:intron 30.0%
TAGTCAAAACATGTATGGTA+AGG + chr8_4:16744526-16744545 Msa1316440:intron 30.0%
! ATGTAGCTTTTCTATCTACT+TGG + chr8_4:16744838-16744857 Msa1316440:intron 30.0%
! TGTAGCTTTTCTATCTACTT+GGG + chr8_4:16744839-16744858 Msa1316440:intron 30.0%
TTTGTTTGTCCATGAAACTA+TGG + chr8_4:16745298-16745317 Msa1316440:three_prime_UTR 30.0%
TACTAACAACCATAGTTTCA+TGG - chr8_4:16745310-16745329 None:intergenic 30.0%
TAGCAACCTTTGTATAGAAA+AGG + chr8_4:16745378-16745397 Msa1316440:three_prime_UTR 30.0%
! CTAAGGCATTAATGAAAGAA+AGG - chr8_4:16745599-16745618 None:intergenic 30.0%
TGTGTCTGTGAAAATGTGAA+AGG - chr8_4:16739522-16739541 None:intergenic 35.0%
!!! ATTTTGGTGGGCTTGATTTA+GGG - chr8_4:16739627-16739646 None:intergenic 35.0%
ATATATGTTGTCCAAACACC+AGG - chr8_4:16739817-16739836 None:intergenic 35.0%
! TTCTCATCCTCTTCTTTTCA+TGG + chr8_4:16739836-16739855 Msa1316440:CDS 35.0%
!!! ATCATGGTTTTGTCTGTCTT+TGG + chr8_4:16739859-16739878 Msa1316440:CDS 35.0%
AATGTTCGTACTATGAAGCA+CGG + chr8_4:16740162-16740181 Msa1316440:intron 35.0%
AGTAATCATATGTGTCGTGT+TGG + chr8_4:16740235-16740254 Msa1316440:intron 35.0%
GACTGTATGTATGAGTTTCA+TGG + chr8_4:16740321-16740340 Msa1316440:intron 35.0%
CTGTATGTATGAGTTTCATG+GGG + chr8_4:16740323-16740342 Msa1316440:intron 35.0%
!! TAATTGTGACGGACATGATA+AGG + chr8_4:16740381-16740400 Msa1316440:intron 35.0%
CTGCATAGTTGTTTAGTGTA+GGG + chr8_4:16740438-16740457 Msa1316440:intron 35.0%
AAAATAGAGGACAGAGATCT+TGG + chr8_4:16740523-16740542 Msa1316440:intron 35.0%
!! TAAAGCACTGCCAAATACAT+CGG + chr8_4:16740583-16740602 Msa1316440:intron 35.0%
AAAGGATTAATGGGATACAG+AGG - chr8_4:16740916-16740935 None:intergenic 35.0%
! TCACTGTTAGAGTATTTGCT+TGG + chr8_4:16740986-16741005 Msa1316440:intron 35.0%
CTTGTCAATTGTTGTGATGA+GGG + chr8_4:16741037-16741056 Msa1316440:intron 35.0%
!! GTACTTCTAAAGTCAAACAG+AGG - chr8_4:16741210-16741229 None:intergenic 35.0%
!!! CTTCCTTTGATTTTTTGGGT+AGG + chr8_4:16741376-16741395 Msa1316440:intron 35.0%
CTACCTACCCAAAAAATCAA+AGG - chr8_4:16741382-16741401 None:intergenic 35.0%
TTGATTATGTTGTGTGCTTC+AGG + chr8_4:16741595-16741614 Msa1316440:intron 35.0%
GGATCTACAATAGATTGACA+TGG + chr8_4:16741672-16741691 Msa1316440:CDS 35.0%
TCTACAATAGATTGACATGG+TGG + chr8_4:16741675-16741694 Msa1316440:CDS 35.0%
CTACAATAGATTGACATGGT+GGG + chr8_4:16741676-16741695 Msa1316440:CDS 35.0%
! GTTTTTGACAGTTGTTCCTT+TGG + chr8_4:16741739-16741758 Msa1316440:CDS 35.0%
AATGCAGGTATGCAAGTTAA+AGG - chr8_4:16741778-16741797 None:intergenic 35.0%
!! TTTAACTTGCATACCTGCAT+TGG + chr8_4:16741777-16741796 Msa1316440:intron 35.0%
!!! ATACCTGCATTGGTTTTTAG+TGG + chr8_4:16741787-16741806 Msa1316440:intron 35.0%
!!! GTTTTTAGTGGTGTTTGTTC+CGG + chr8_4:16741799-16741818 Msa1316440:intron 35.0%
ATAAAAACTGTGATATCGGC+CGG - chr8_4:16741821-16741840 None:intergenic 35.0%
TCTTATATGTGGGCATGATA+TGG + chr8_4:16742112-16742131 Msa1316440:intron 35.0%
ACTAGAAGGGAATAACACAT+AGG - chr8_4:16742138-16742157 None:intergenic 35.0%
GGATATATAACCAGCATGAT+TGG - chr8_4:16742405-16742424 None:intergenic 35.0%
! ATCATGCTGGTTATATATCC+TGG + chr8_4:16742405-16742424 Msa1316440:intron 35.0%
AAAACACTGCATTCAATCTC+TGG - chr8_4:16742454-16742473 None:intergenic 35.0%
ATTCCATTGTTGCACACTAT+TGG - chr8_4:16742762-16742781 None:intergenic 35.0%
!!! CATGTTTTAACCAGATGACT+TGG - chr8_4:16743005-16743024 None:intergenic 35.0%
AGTCATCTGGTTAAAACATG+CGG + chr8_4:16743005-16743024 Msa1316440:intron 35.0%
! TGCTTGAATGACATTTGTTG+AGG + chr8_4:16743106-16743125 Msa1316440:intron 35.0%
GTTATACACTTGCATTCCTT+GGG - chr8_4:16743158-16743177 None:intergenic 35.0%
TTTCTTGCATAATAGTCGCA+AGG - chr8_4:16743180-16743199 None:intergenic 35.0%
CAAAATTTGCGACTGCATTT+GGG - chr8_4:16743508-16743527 None:intergenic 35.0%
TCAAAATTTGCGACTGCATT+TGG - chr8_4:16743509-16743528 None:intergenic 35.0%
! ATGCAGTCGCAAATTTTGAA+TGG + chr8_4:16743510-16743529 Msa1316440:intron 35.0%
TTGGAGGTTTCTATTCTTCA+TGG + chr8_4:16743583-16743602 Msa1316440:intron 35.0%
TTTCTATTCTTCATGGTGTC+TGG + chr8_4:16743590-16743609 Msa1316440:intron 35.0%
TTCTATTCTTCATGGTGTCT+GGG + chr8_4:16743591-16743610 Msa1316440:intron 35.0%
!! ACAATTGATTCGGAAATCAG+CGG + chr8_4:16743821-16743840 Msa1316440:intron 35.0%
ATTTGCACTTCGGTCTTTAA+AGG + chr8_4:16743909-16743928 Msa1316440:intron 35.0%
TTTGCACTTCGGTCTTTAAA+GGG + chr8_4:16743910-16743929 Msa1316440:intron 35.0%
CAAAAGAACCTGAATCTCAA+AGG - chr8_4:16744043-16744062 None:intergenic 35.0%
! TAGATAGTTTTCTGCAGTGA+GGG + chr8_4:16744158-16744177 Msa1316440:intron 35.0%
!! TAATTAATCTGAGGCATCGT+CGG + chr8_4:16744184-16744203 Msa1316440:intron 35.0%
!!! ACGTATTGCATGTTTTTAGC+TGG + chr8_4:16744329-16744348 Msa1316440:intron 35.0%
!! CCTCTATTGACTCTCTAAAT+AGG - chr8_4:16744364-16744383 None:intergenic 35.0%
CCTATTTAGAGAGTCAATAG+AGG + chr8_4:16744361-16744380 Msa1316440:intron 35.0%
ACGTTAAAGCTTGCAACTTA+TGG - chr8_4:16744407-16744426 None:intergenic 35.0%
CTTTAACGTACCATACTAGA+TGG + chr8_4:16744418-16744437 Msa1316440:intron 35.0%
AATTTCTGCACCATCTAGTA+TGG - chr8_4:16744431-16744450 None:intergenic 35.0%
TGATAGATTGTTGTCTAAGG+TGG + chr8_4:16744654-16744673 Msa1316440:intron 35.0%
GTAATAGTCTATTTCCCACA+TGG - chr8_4:16744685-16744704 None:intergenic 35.0%
ACAATCCTTGGTAAGAAGAT+TGG + chr8_4:16744703-16744722 Msa1316440:intron 35.0%
! AAATCTAGATATGCTTGCTG+AGG + chr8_4:16744775-16744794 Msa1316440:intron 35.0%
! CTTTTCTATCTACTTGGGTT+GGG + chr8_4:16744844-16744863 Msa1316440:intron 35.0%
ATGCACAAGGTTAGGATATT+CGG + chr8_4:16745249-16745268 Msa1316440:CDS 35.0%
!!! CTTTTTTCCAGAACAAGAGA+AGG - chr8_4:16745357-16745376 None:intergenic 35.0%
! GTTCTGCCTTTTCTATACAA+AGG - chr8_4:16745387-16745406 None:intergenic 35.0%
CTTCTAAGCTTCTTCTTCTA+AGG + chr8_4:16745465-16745484 Msa1316440:three_prime_UTR 35.0%
ACGTGTACCAGAGATTATAA+CGG + chr8_4:16745542-16745561 Msa1316440:three_prime_UTR 35.0%
!! TAAAGCACCGTTATAATCTC+TGG - chr8_4:16745552-16745571 None:intergenic 35.0%
!!! AGGGTTACGTTTTTGGGTTT+TGG + chr8_4:16739582-16739601 Msa1316440:five_prime_UTR 40.0%
!!! GATTTTGGTGGGCTTGATTT+AGG - chr8_4:16739628-16739647 None:intergenic 40.0%
ATCTGAACAGGAACACAGAA+TGG + chr8_4:16739782-16739801 Msa1316440:CDS 40.0%
ACAGAATGGTTTACGTATCC+TGG + chr8_4:16739796-16739815 Msa1316440:CDS 40.0%
CCATGATCCATGAAAAGAAG+AGG - chr8_4:16739846-16739865 None:intergenic 40.0%
! CCTCTTCTTTTCATGGATCA+TGG + chr8_4:16739843-16739862 Msa1316440:CDS 40.0%
! TGACGGACATGATAAGGTTT+CGG + chr8_4:16740387-16740406 Msa1316440:intron 40.0%
GCTGCATAGTTGTTTAGTGT+AGG + chr8_4:16740437-16740456 Msa1316440:intron 40.0%
AGTAAAGCTGACACTTTGGA+TGG - chr8_4:16740780-16740799 None:intergenic 40.0%
CTTCTGTTGTCTCATGTCAT+GGG + chr8_4:16740841-16740860 Msa1316440:intron 40.0%
TCCCATTAATCCTTTGCCAT+TGG + chr8_4:16740921-16740940 Msa1316440:intron 40.0%
GCCAATGGCAAAGGATTAAT+GGG - chr8_4:16740925-16740944 None:intergenic 40.0%
TGCCAATGGCAAAGGATTAA+TGG - chr8_4:16740926-16740945 None:intergenic 40.0%
AATCCTTTGCCATTGGCATT+TGG + chr8_4:16740928-16740947 Msa1316440:intron 40.0%
TCTGTCACAGTCTCTTGATT+TGG + chr8_4:16740951-16740970 Msa1316440:intron 40.0%
TCACAACAATTGACAAGGAG+AGG - chr8_4:16741034-16741053 None:intergenic 40.0%
CCTCATCACAACAATTGACA+AGG - chr8_4:16741039-16741058 None:intergenic 40.0%
CCTTGTCAATTGTTGTGATG+AGG + chr8_4:16741036-16741055 Msa1316440:intron 40.0%
TAGGAGGAACAAAGATCTGA+AGG - chr8_4:16741081-16741100 None:intergenic 40.0%
GGCAATAAACTGAATCTAGG+AGG - chr8_4:16741097-16741116 None:intergenic 40.0%
CCAATGTAGTTCAAGAATCG+CGG - chr8_4:16741118-16741137 None:intergenic 40.0%
! TCTAAAGTCAAACAGAGGAG+AGG - chr8_4:16741205-16741224 None:intergenic 40.0%
GTGGTCATTCCTTGTTAACT+AGG + chr8_4:16741254-16741273 Msa1316440:intron 40.0%
AGCTCATGTAGCATTTAGTG+AGG + chr8_4:16741452-16741471 Msa1316440:intron 40.0%
!!! CACTTTTTCCACTGGAAGAA+AGG + chr8_4:16741626-16741645 Msa1316440:CDS 40.0%
AACTCCATTTGCAGATGATC+AGG + chr8_4:16741649-16741668 Msa1316440:CDS 40.0%
ACTCCATTTGCAGATGATCA+GGG + chr8_4:16741650-16741669 Msa1316440:CDS 40.0%
AGGAGAACTTACAGAACCAA+AGG - chr8_4:16741758-16741777 None:intergenic 40.0%
ACACCACTAAAAACCAATGC+AGG - chr8_4:16741793-16741812 None:intergenic 40.0%
! GTTGGTAGGTTGGGTTTATT+TGG + chr8_4:16742198-16742217 Msa1316440:intron 40.0%
TAAGCCTGTATGAACTGATG+TGG + chr8_4:16742565-16742584 Msa1316440:intron 40.0%
TATTGAAAGTAGCCTGTACC+AGG + chr8_4:16742724-16742743 Msa1316440:intron 40.0%
ATTGAAAGTAGCCTGTACCA+GGG + chr8_4:16742725-16742744 Msa1316440:intron 40.0%
! CCAACGAACAACTGACTTAA+TGG - chr8_4:16742790-16742809 None:intergenic 40.0%
CCATTAAGTCAGTTGTTCGT+TGG + chr8_4:16742787-16742806 Msa1316440:intron 40.0%
CCAAACTAAATCGGATGACT+TGG - chr8_4:16742944-16742963 None:intergenic 40.0%
CCAAGTCATCCGATTTAGTT+TGG + chr8_4:16742941-16742960 Msa1316440:intron 40.0%
AGTGATACAACCAAGTCATC+TGG + chr8_4:16742992-16743011 Msa1316440:intron 40.0%
!!! CAGTGTTTTTAAAACCGGCT+CGG - chr8_4:16743088-16743107 None:intergenic 40.0%
GGTTATACACTTGCATTCCT+TGG - chr8_4:16743159-16743178 None:intergenic 40.0%
CGACTATTATGCAAGAAAGC+CGG + chr8_4:16743182-16743201 Msa1316440:intron 40.0%
AGTAGTCTCTTAGCTTCACT+AGG + chr8_4:16743392-16743411 Msa1316440:intron 40.0%
TCTATTCTTCATGGTGTCTG+GGG + chr8_4:16743592-16743611 Msa1316440:intron 40.0%
TTATTTGTGGTGAAACTGCG+TGG + chr8_4:16743638-16743657 Msa1316440:intron 40.0%
!! CTTTGCTCCTCTAAGGTAAT+GGG - chr8_4:16743938-16743957 None:intergenic 40.0%
!! TCTTTGCTCCTCTAAGGTAA+TGG - chr8_4:16743939-16743958 None:intergenic 40.0%
GTCATTTCTTTGCTCCTCTA+AGG - chr8_4:16743945-16743964 None:intergenic 40.0%
!! AGCAAATCCCTTTGAGATTC+AGG + chr8_4:16744032-16744051 Msa1316440:intron 40.0%
AGACATTAAGTGACGCACAA+TGG - chr8_4:16744137-16744156 None:intergenic 40.0%
! CTAGATAGTTTTCTGCAGTG+AGG + chr8_4:16744157-16744176 Msa1316440:intron 40.0%
!! TGAGGGCGTTAATTAATCTG+AGG + chr8_4:16744175-16744194 Msa1316440:intron 40.0%
! TACGTTATGGTACTAGCTCT+TGG - chr8_4:16744314-16744333 None:intergenic 40.0%
CCAATCCAATCTTCTTACCA+AGG - chr8_4:16744711-16744730 None:intergenic 40.0%
CCTTGGTAAGAAGATTGGAT+TGG + chr8_4:16744708-16744727 Msa1316440:intron 40.0%
! TGGTAAGAAGATTGGATTGG+AGG + chr8_4:16744711-16744730 Msa1316440:intron 40.0%
! GGTAAGAAGATTGGATTGGA+GGG + chr8_4:16744712-16744731 Msa1316440:intron 40.0%
! GCTTTTCTATCTACTTGGGT+TGG + chr8_4:16744843-16744862 Msa1316440:intron 40.0%
!! TATCTACTTGGGTTGGGAAA+GGG + chr8_4:16744850-16744869 Msa1316440:intron 40.0%
TCCAATGCTGTTCTTCAACA+CGG + chr8_4:16745188-16745207 Msa1316440:CDS 40.0%
ATCCTAACCTTGTGCATGTT+GGG - chr8_4:16745246-16745265 None:intergenic 40.0%
TATCCTAACCTTGTGCATGT+TGG - chr8_4:16745247-16745266 None:intergenic 40.0%
AGAGAAGGAAGAAAGAAGAG+AGG - chr8_4:16745342-16745361 None:intergenic 40.0%
CTTTCTTCCTTCTCTTGTTC+TGG + chr8_4:16745347-16745366 Msa1316440:three_prime_UTR 40.0%
GTATAGAAAAGGCAGAACTG+TGG + chr8_4:16745389-16745408 Msa1316440:three_prime_UTR 40.0%
GGTTTACGTATCCTGGTGTT+TGG + chr8_4:16739803-16739822 Msa1316440:CDS 45.0%
TCTGTCTTTGGTTGTTCTCC+TGG + chr8_4:16739871-16739890 Msa1316440:CDS 45.0%
CTGTCTTTGGTTGTTCTCCT+GGG + chr8_4:16739872-16739891 Msa1316440:CDS 45.0%
ACAATAGTCCAAGCAATCCC+AGG - chr8_4:16739892-16739911 None:intergenic 45.0%
! CATATGTGTCGTGTTGGTGT+CGG + chr8_4:16740241-16740260 Msa1316440:intron 45.0%
! ATATGTGTCGTGTTGGTGTC+GGG + chr8_4:16740242-16740261 Msa1316440:intron 45.0%
! TTATTACCGAAAGCGTGTCC+CGG - chr8_4:16740287-16740306 None:intergenic 45.0%
! GTGTCATGTGCCGATGTATT+TGG - chr8_4:16740596-16740615 None:intergenic 45.0%
ACATACAACACCGACACATG+TGG - chr8_4:16740667-16740686 None:intergenic 45.0%
!! CACATGTGTCGGTGTTGTAT+TGG + chr8_4:16740665-16740684 Msa1316440:intron 45.0%
!! TGTCGGTGTTGTATTGGTGT+CGG + chr8_4:16740738-16740757 Msa1316440:intron 45.0%
AGCTGACACTTTGGATGGAA+GGG - chr8_4:16740775-16740794 None:intergenic 45.0%
AAGCTGACACTTTGGATGGA+AGG - chr8_4:16740776-16740795 None:intergenic 45.0%
GCTTCTGTTGTCTCATGTCA+TGG + chr8_4:16740840-16740859 Msa1316440:intron 45.0%
AGACCAAATGCCAATGGCAA+AGG - chr8_4:16740934-16740953 None:intergenic 45.0%
TGTGACAGACCAAATGCCAA+TGG - chr8_4:16740940-16740959 None:intergenic 45.0%
TTGTTGTGATGAGGGATGAC+TGG + chr8_4:16741045-16741064 Msa1316440:intron 45.0%
TGTTGTGATGAGGGATGACT+GGG + chr8_4:16741046-16741065 Msa1316440:intron 45.0%
CGCGGCAATAAACTGAATCT+AGG - chr8_4:16741100-16741119 None:intergenic 45.0%
CCGCGATTCTTGAACTACAT+TGG + chr8_4:16741115-16741134 Msa1316440:intron 45.0%
TATTCGTTTGACTGAGAGCC+AGG + chr8_4:16741289-16741308 Msa1316440:intron 45.0%
ATGTAGCATTTAGTGAGGCG+AGG + chr8_4:16741457-16741476 Msa1316440:intron 45.0%
TGTAGCATTTAGTGAGGCGA+GGG + chr8_4:16741458-16741477 Msa1316440:intron 45.0%
ATGGAGTTCCTTTCTTCCAG+TGG - chr8_4:16741637-16741656 None:intergenic 45.0%
CTCCATTTGCAGATGATCAG+GGG + chr8_4:16741651-16741670 Msa1316440:CDS 45.0%
ATCCCCTGATCATCTGCAAA+TGG - chr8_4:16741656-16741675 None:intergenic 45.0%
GTGAAAACTCCCAATCATGC+TGG + chr8_4:16742392-16742411 Msa1316440:intron 45.0%
!!! CAGTGTTTTAAAAACCGGGC+CGG + chr8_4:16742465-16742484 Msa1316440:intron 45.0%
CAGACTAGGAATTGGACCTA+CGG + chr8_4:16742493-16742512 Msa1316440:intron 45.0%
CAGACCACATCAGTTCATAC+AGG - chr8_4:16742572-16742591 None:intergenic 45.0%
CTGTATGAACTGATGTGGTC+TGG + chr8_4:16742570-16742589 Msa1316440:intron 45.0%
TATTGAAAGTAGCCTGCACC+AGG + chr8_4:16742634-16742653 Msa1316440:intron 45.0%
AAAACATGCGGTTCGACTAG+TGG + chr8_4:16743017-16743036 Msa1316440:intron 45.0%
!! CGGTAAGGGTATTAAGTCAC+TGG - chr8_4:16743056-16743075 None:intergenic 45.0%
ACACTTTGATGAGAGGCCTT+TGG - chr8_4:16743448-16743467 None:intergenic 45.0%
AAAGGCCTCTCATCAAAGTG+TGG + chr8_4:16743447-16743466 Msa1316440:intron 45.0%
CTTCACCACACTTTGATGAG+AGG - chr8_4:16743455-16743474 None:intergenic 45.0%
CCTTTGGGCTCATGTTAAGT+AGG - chr8_4:16743978-16743997 None:intergenic 45.0%
CCTACTTAACATGAGCCCAA+AGG + chr8_4:16743975-16743994 Msa1316440:intron 45.0%
ACTTTCTGATAAGGTGGGCA+TGG + chr8_4:16744066-16744085 Msa1316440:intron 45.0%
! GATTGTTGTCTAAGGTGGCT+AGG + chr8_4:16744659-16744678 Msa1316440:intron 45.0%
! AGAAGATTGGATTGGAGGGT+AGG + chr8_4:16744716-16744735 Msa1316440:intron 45.0%
!! CTATCTACTTGGGTTGGGAA+AGG + chr8_4:16744849-16744868 Msa1316440:intron 45.0%
GTTGGGAAAGGGTTTGATTG+TGG + chr8_4:16744861-16744880 Msa1316440:intron 45.0%
CTCATAGTCAGTTGTGTGTG+AGG - chr8_4:16745166-16745185 None:intergenic 45.0%
ACCGTGTTGAAGAACAGCAT+TGG - chr8_4:16745192-16745211 None:intergenic 45.0%
CGCAACAACTAGCACAATCA+CGG - chr8_4:16745217-16745236 None:intergenic 45.0%
TCCTAACCTTGTGCATGTTG+GGG - chr8_4:16745245-16745264 None:intergenic 45.0%
AGAAAAGGCAGAACTGTGGA+AGG + chr8_4:16745393-16745412 Msa1316440:three_prime_UTR 45.0%
!! TCTATTTATTATTAAAAAAA+CGG - chr8_4:16742890-16742909 None:intergenic 5.0%
!!! TAATATTTATAGAAATTTTT+AGG + chr8_4:16742916-16742935 Msa1316440:intron 5.0%
!!! AATATTTATAGAAATTTTTA+GGG + chr8_4:16742917-16742936 Msa1316440:intron 5.0%
!! TTTATCATAATTTAAATAAT+TGG + chr8_4:16743866-16743885 Msa1316440:intron 5.0%
GTTGTTCTCCTGGGATTGCT+TGG + chr8_4:16739881-16739900 Msa1316440:CDS 50.0%
CACTAGGACATGTTGGACAC+CGG + chr8_4:16740265-16740284 Msa1316440:intron 50.0%
ACTAGGACATGTTGGACACC+GGG + chr8_4:16740266-16740285 Msa1316440:intron 50.0%
GCTGACACTTTGGATGGAAG+GGG - chr8_4:16740774-16740793 None:intergenic 50.0%
CTGTTGTCTCATGTCATGGG+TGG + chr8_4:16740844-16740863 Msa1316440:intron 50.0%
GAGAGGCTCACACGAGATAT+TGG - chr8_4:16741017-16741036 None:intergenic 50.0%
TGATGAGGGATGACTGGGTA+GGG + chr8_4:16741051-16741070 Msa1316440:intron 50.0%
GTAGCATTTAGTGAGGCGAG+GGG + chr8_4:16741459-16741478 Msa1316440:intron 50.0%
! TAGATTGACATGGTGGGAGC+AGG + chr8_4:16741682-16741701 Msa1316440:CDS 50.0%
GAAAGCAGCTCACTCGTAAC+AGG + chr8_4:16741714-16741733 Msa1316440:CDS 50.0%
CAATTCCTAGTCTGACCAGC+CGG - chr8_4:16742487-16742506 None:intergenic 50.0%
TTGTTGCACACTATTGGCCC+TGG - chr8_4:16742666-16742685 None:intergenic 50.0%
TTGTTGCACACTATTGGCCC+TGG - chr8_4:16742666-16742685 None:intergenic 50.0%
GGGCCAATAGTGTGCAACAA+TGG + chr8_4:16742666-16742685 Msa1316440:intron 50.0%
AAGTCACTGGCCAAACCACA+GGG - chr8_4:16743043-16743062 None:intergenic 50.0%
TAAGTCACTGGCCAAACCAC+AGG - chr8_4:16743044-16743063 None:intergenic 50.0%
CTCGGTGATCAACTCGGTAA+GGG - chr8_4:16743070-16743089 None:intergenic 50.0%
AAGGGCTCCCATTACCTTAG+AGG + chr8_4:16743928-16743947 Msa1316440:intron 50.0%
TCTGATAAGGTGGGCATGGT+TGG + chr8_4:16744070-16744089 Msa1316440:intron 50.0%
TGTACGGACAACACCCATGT+AGG + chr8_4:16744625-16744644 Msa1316440:intron 50.0%
! TAGGCCATAAGAGTGTGACG+AGG + chr8_4:16744735-16744754 Msa1316440:intron 50.0%
! AGGCCATAAGAGTGTGACGA+GGG + chr8_4:16744736-16744755 Msa1316440:intron 50.0%
TCTCCCTCGTCACACTCTTA+TGG - chr8_4:16744742-16744761 None:intergenic 50.0%
GAAGTTCCCCAACATGCACA+AGG + chr8_4:16745236-16745255 Msa1316440:CDS 50.0%
TCCCCAACATGCACAAGGTT+AGG + chr8_4:16745241-16745260 Msa1316440:CDS 50.0%
TGTCAAAGCTGTGCCACCTG+CGG + chr8_4:16739759-16739778 Msa1316440:CDS 55.0%
TTCCTGTTCAGATCCGCAGG+TGG - chr8_4:16739775-16739794 None:intergenic 55.0%
GTGTTCCTGTTCAGATCCGC+AGG - chr8_4:16739778-16739797 None:intergenic 55.0%
TGTCGGGCACTAGGACATGT+TGG + chr8_4:16740258-16740277 Msa1316440:intron 55.0%
!! CTTTGGATGGAAGGGGTGTC+TGG - chr8_4:16740767-16740786 None:intergenic 55.0%
CTCATGTCATGGGTGGAGAG+TGG + chr8_4:16740851-16740870 Msa1316440:intron 55.0%
GTGATGAGGGATGACTGGGT+AGG + chr8_4:16741050-16741069 Msa1316440:intron 55.0%
GATGAGGGATGACTGGGTAG+GGG + chr8_4:16741052-16741071 Msa1316440:intron 55.0%
!!! GTTTTAAAAACCGGGCCGGC+TGG + chr8_4:16742469-16742488 Msa1316440:intron 55.0%
! CGGCTGGTCAGACTAGGAAT+TGG + chr8_4:16742485-16742504 Msa1316440:intron 55.0%
CTAGGAATTGGACCTACGGC+TGG + chr8_4:16742497-16742516 Msa1316440:intron 55.0%
AATTGGACCTACGGCTGGAC+AGG + chr8_4:16742502-16742521 Msa1316440:intron 55.0%
ATAGTGACCTGTCCAGCCGT+AGG - chr8_4:16742512-16742531 None:intergenic 55.0%
! TATTGGCCCTGGTTCGATCC+TGG - chr8_4:16742655-16742674 None:intergenic 55.0%
! GCTCGGTGATCAACTCGGTA+AGG - chr8_4:16743071-16743090 None:intergenic 55.0%
!! TACCGAGTTGATCACCGAGC+CGG + chr8_4:16743071-16743090 Msa1316440:intron 55.0%
!! AACCGGCTCGGTGATCAACT+CGG - chr8_4:16743076-16743095 None:intergenic 55.0%
! TCTAAGGTGGCTAGGCCATG+TGG + chr8_4:16744667-16744686 Msa1316440:intron 55.0%
CTAAGGTGGCTAGGCCATGT+GGG + chr8_4:16744668-16744687 Msa1316440:intron 55.0%
TGCCACCTGCGGATCTGAAC+AGG + chr8_4:16739770-16739789 Msa1316440:CDS 60.0%
!! TCGTGTTGGTGTCGGGCACT+AGG + chr8_4:16740249-16740268 Msa1316440:intron 60.0%
TGGACACCGGGACACGCTTT+CGG + chr8_4:16740278-16740297 Msa1316440:intron 60.0%
TGGTGGGAGCAGGTCGACAA+TGG + chr8_4:16741692-16741711 Msa1316440:CDS 60.0%
CCTGCACCAGGATCGAACCA+GGG + chr8_4:16742646-16742665 Msa1316440:intron 60.0%
CCTGTACCAGGGTCGAACCA+GGG + chr8_4:16742736-16742755 Msa1316440:intron 60.0%
! TATTGGCCCTGGTTCGACCC+TGG - chr8_4:16742745-16742764 None:intergenic 60.0%
CGACTAGTGGCCCTGTGGTT+TGG + chr8_4:16743030-16743049 Msa1316440:intron 60.0%
GCCTGCACCAGGATCGAACC+AGG + chr8_4:16742645-16742664 Msa1316440:intron 65.0%
! CCCTGGTTCGATCCTGGTGC+AGG - chr8_4:16742649-16742668 None:intergenic 65.0%
GCCTGTACCAGGGTCGAACC+AGG + chr8_4:16742735-16742754 Msa1316440:intron 65.0%
! CCCTGGTTCGACCCTGGTAC+AGG - chr8_4:16742739-16742758 None:intergenic 65.0%
CGGTTCGACTAGTGGCCCTG+TGG + chr8_4:16743025-16743044 Msa1316440:intron 65.0%
CCTAGTCTGACCAGCCGGCC+CGG - chr8_4:16742482-16742501 None:intergenic 70.0%
! CCGGGCCGGCTGGTCAGACT+AGG + chr8_4:16742479-16742498 Msa1316440:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 16739437 16745647 16739437 ID=Msa1316440;Name=Msa1316440
chr8_4 mRNA 16739437 16745647 16739437 ID=Msa1316440-mRNA-1;Parent=Msa1316440;Name=Msa1316440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=308|1|1|1|1|1|3|357|157
chr8_4 exon 16739437 16739930 16739437 ID=Msa1316440-mRNA-1:exon:6244;Parent=Msa1316440-mRNA-1
chr8_4 exon 16741617 16741765 16741617 ID=Msa1316440-mRNA-1:exon:6245;Parent=Msa1316440-mRNA-1
chr8_4 exon 16745152 16745647 16745152 ID=Msa1316440-mRNA-1:exon:6246;Parent=Msa1316440-mRNA-1
chr8_4 five_prime_UTR 16739437 16739744 16739437 ID=Msa1316440-mRNA-1:five_prime_utr;Parent=Msa1316440-mRNA-1
chr8_4 CDS 16739745 16739930 16739745 ID=Msa1316440-mRNA-1:cds;Parent=Msa1316440-mRNA-1
chr8_4 CDS 16741617 16741765 16741617 ID=Msa1316440-mRNA-1:cds;Parent=Msa1316440-mRNA-1
chr8_4 CDS 16745152 16745290 16745152 ID=Msa1316440-mRNA-1:cds;Parent=Msa1316440-mRNA-1
chr8_4 three_prime_UTR 16745291 16745647 16745291 ID=Msa1316440-mRNA-1:three_prime_utr;Parent=Msa1316440-mRNA-1
Gene Sequence

>Msa1316440

ATGGCTAATCTGTATGTCAAAGCTGTGCCACCTGCGGATCTGAACAGGAACACAGAATGGTTTACGTATCCTGGTGTTTGGACAACATATATTCTCATCCTCTTCTTTTCATGGATCATGGTTTTGTCTGTCTTTGGTTGTTCTCCTGGGATTGCTTGGACTATTGTTAATCTCGCTCATTTTCTTGTAACATATCACTTTTTCCACTGGAAGAAAGGAACTCCATTTGCAGATGATCAGGGGATCTACAATAGATTGACATGGTGGGAGCAGGTCGACAATGGAAAGCAGCTCACTCGTAACAGGAAGTTTTTGACAGTTGTTCCTTTGGTTCTGTACTTGATAGCCTCACACACAACTGACTATGAGCATCCAATGCTGTTCTTCAACACGGTTGCCGTGATTGTGCTAGTTGTTGCGAAGTTCCCCAACATGCACAAGGTTAGGATATTCGGAATCAACGCTGATAAGTGA

Protein sequence

>Msa1316440

MANLYVKAVPPADLNRNTEWFTYPGVWTTYILILFFSWIMVLSVFGCSPGIAWTIVNLAHFLVTYHFFHWKKGTPFADDQGIYNRLTWWEQVDNGKQLTRNRKFLTVVPLVLYLIASHTTDYEHPMLFFNTVAVIVLVVAKFPNMHKVRIFGINADK*