Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724340 | GAU49420.1 | 84.549 | 233 | 34 | 2 | 1 | 232 | 1 | 232 | 3.15e-136 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724340 | sp|Q9FUS9|GSTUI_ARATH | 55.263 | 228 | 101 | 1 | 1 | 228 | 1 | 227 | 6.46e-84 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724340 | A0A2Z6PF61 | 84.549 | 233 | 34 | 2 | 1 | 232 | 1 | 232 | 1.50e-136 | 392 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005050 | Msa0724340 | 0.803437 | 3.488324e-49 | -8.615850e-47 |
| Msa0053110 | Msa0724340 | 0.820729 | 5.881599e-53 | -8.615850e-47 |
| Msa0724340 | Msa0747780 | 0.816591 | 5.110185e-52 | -8.615850e-47 |
| Msa0724340 | Msa0872310 | 0.811093 | 8.316263e-51 | -8.615850e-47 |
| Msa0724340 | Msa0905550 | 0.800150 | 1.649851e-48 | -8.615850e-47 |
| Msa0724340 | Msa1420060 | 0.819536 | 1.103091e-52 | -8.615850e-47 |
| Msa0219190 | Msa0724340 | 0.810389 | 1.181202e-50 | -8.615850e-47 |
| Msa0413930 | Msa0724340 | 0.836658 | 8.225013e-57 | -8.615850e-47 |
| Msa0298240 | Msa0724340 | 0.802630 | 5.121953e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724340 | MtrunA17_Chr5g0415411 | 78.017 | 232 | 47 | 1 | 1 | 232 | 1 | 228 | 1.18e-129 | 365 |
| Msa0724340 | MtrunA17_Chr8g0363751 | 57.589 | 224 | 91 | 2 | 1 | 222 | 1 | 222 | 9.39e-89 | 261 |
| Msa0724340 | MtrunA17_Chr8g0391631 | 56.522 | 161 | 66 | 2 | 1 | 159 | 17 | 175 | 6.69e-61 | 189 |
| Msa0724340 | MtrunA17_Chr7g0240631 | 39.655 | 232 | 130 | 3 | 1 | 230 | 1 | 224 | 6.10e-55 | 175 |
| Msa0724340 | MtrunA17_Chr7g0240641 | 40.086 | 232 | 129 | 3 | 1 | 230 | 1 | 224 | 1.47e-54 | 174 |
| Msa0724340 | MtrunA17_Chr7g0240681 | 42.241 | 232 | 123 | 4 | 1 | 229 | 1 | 224 | 6.77e-54 | 172 |
| Msa0724340 | MtrunA17_Chr7g0240691 | 42.731 | 227 | 121 | 3 | 5 | 230 | 37 | 255 | 5.58e-53 | 171 |
| Msa0724340 | MtrunA17_Chr7g0240581 | 39.394 | 231 | 130 | 3 | 1 | 229 | 1 | 223 | 1.92e-52 | 169 |
| Msa0724340 | MtrunA17_Chr1g0196721 | 42.411 | 224 | 123 | 3 | 6 | 229 | 3 | 220 | 4.43e-51 | 165 |
| Msa0724340 | MtrunA17_Chr7g0240561 | 39.827 | 231 | 129 | 3 | 1 | 229 | 1 | 223 | 4.48e-51 | 165 |
| Msa0724340 | MtrunA17_Chr1g0196691 | 40.789 | 228 | 126 | 5 | 5 | 230 | 28 | 248 | 1.24e-50 | 165 |
| Msa0724340 | MtrunA17_Chr7g0240541 | 40.260 | 231 | 128 | 3 | 1 | 229 | 1 | 223 | 4.36e-50 | 163 |
| Msa0724340 | MtrunA17_Chr3g0132581 | 40.870 | 230 | 128 | 3 | 1 | 230 | 1 | 222 | 9.74e-50 | 162 |
| Msa0724340 | MtrunA17_Chr1g0196661 | 40.625 | 224 | 127 | 3 | 5 | 228 | 3 | 220 | 2.73e-49 | 160 |
| Msa0724340 | MtrunA17_Chr7g0240551 | 39.394 | 231 | 130 | 3 | 1 | 229 | 1 | 223 | 7.27e-49 | 160 |
| Msa0724340 | MtrunA17_Chr7g0240531 | 39.827 | 231 | 129 | 3 | 1 | 229 | 1 | 223 | 7.59e-49 | 159 |
| Msa0724340 | MtrunA17_Chr1g0212301 | 42.130 | 216 | 112 | 5 | 5 | 216 | 3 | 209 | 1.04e-48 | 159 |
| Msa0724340 | MtrunA17_Chr7g0240521 | 40.773 | 233 | 125 | 6 | 1 | 229 | 8 | 231 | 2.59e-48 | 159 |
| Msa0724340 | MtrunA17_Chr6g0483141 | 38.428 | 229 | 130 | 3 | 4 | 229 | 2 | 222 | 3.90e-48 | 158 |
| Msa0724340 | MtrunA17_Chr4g0008791 | 38.938 | 226 | 130 | 2 | 5 | 230 | 7 | 224 | 6.58e-48 | 157 |
| Msa0724340 | MtrunA17_Chr8g0379561 | 39.269 | 219 | 125 | 3 | 1 | 219 | 2 | 212 | 7.17e-48 | 157 |
| Msa0724340 | MtrunA17_Chr7g0240511 | 38.961 | 231 | 126 | 5 | 1 | 229 | 1 | 218 | 4.09e-47 | 155 |
| Msa0724340 | MtrunA17_Chr1g0196711 | 39.648 | 227 | 125 | 4 | 5 | 228 | 3 | 220 | 4.56e-47 | 155 |
| Msa0724340 | MtrunA17_Chr2g0312771 | 40.741 | 216 | 119 | 3 | 3 | 218 | 2 | 208 | 1.25e-46 | 154 |
| Msa0724340 | MtrunA17_Chr2g0312781 | 43.333 | 210 | 106 | 5 | 8 | 215 | 24 | 222 | 3.57e-46 | 153 |
| Msa0724340 | MtrunA17_Chr8g0379581 | 38.532 | 218 | 126 | 2 | 1 | 218 | 1 | 210 | 5.49e-46 | 152 |
| Msa0724340 | MtrunA17_Chr7g0240671 | 37.850 | 214 | 120 | 4 | 1 | 214 | 1 | 201 | 7.62e-46 | 152 |
| Msa0724340 | MtrunA17_Chr2g0312751 | 40.976 | 205 | 112 | 3 | 14 | 218 | 13 | 208 | 9.18e-45 | 149 |
| Msa0724340 | MtrunA17_Chr7g0240611 | 34.934 | 229 | 137 | 3 | 2 | 230 | 4 | 220 | 1.01e-44 | 149 |
| Msa0724340 | MtrunA17_Chr4g0008781 | 39.286 | 224 | 125 | 4 | 1 | 221 | 1 | 216 | 1.75e-44 | 148 |
| Msa0724340 | MtrunA17_Chr2g0312681 | 39.352 | 216 | 122 | 3 | 3 | 218 | 2 | 208 | 3.54e-44 | 147 |
| Msa0724340 | MtrunA17_Chr4g0029341 | 38.496 | 226 | 127 | 4 | 3 | 225 | 2 | 218 | 8.90e-44 | 146 |
| Msa0724340 | MtrunA17_Chr2g0312791 | 39.171 | 217 | 123 | 4 | 3 | 218 | 2 | 210 | 1.09e-43 | 146 |
| Msa0724340 | MtrunA17_Chr2g0312711 | 39.367 | 221 | 114 | 4 | 4 | 219 | 3 | 208 | 2.35e-43 | 145 |
| Msa0724340 | MtrunA17_Chr2g0312691 | 40.278 | 216 | 120 | 3 | 4 | 219 | 3 | 209 | 4.33e-43 | 145 |
| Msa0724340 | MtrunA17_Chr5g0417011 | 36.486 | 222 | 137 | 3 | 3 | 223 | 5 | 223 | 6.85e-43 | 144 |
| Msa0724340 | MtrunA17_Chr2g0312811 | 42.512 | 207 | 108 | 5 | 14 | 218 | 13 | 210 | 1.08e-42 | 144 |
| Msa0724340 | MtrunA17_Chr2g0312731 | 42.574 | 202 | 107 | 4 | 14 | 215 | 13 | 205 | 3.51e-42 | 142 |
| Msa0724340 | MtrunA17_Chr3g0107731 | 40.566 | 212 | 117 | 4 | 14 | 225 | 18 | 220 | 3.78e-42 | 142 |
| Msa0724340 | MtrunA17_Chr2g0312721 | 41.951 | 205 | 110 | 4 | 14 | 218 | 13 | 208 | 3.82e-42 | 142 |
| Msa0724340 | MtrunA17_Chr7g0240661 | 37.500 | 216 | 123 | 3 | 5 | 220 | 7 | 210 | 4.70e-41 | 140 |
| Msa0724340 | MtrunA17_Chr7g0240651 | 35.398 | 226 | 134 | 3 | 5 | 230 | 7 | 220 | 6.04e-41 | 139 |
| Msa0724340 | MtrunA17_Chr3g0107741 | 40.000 | 215 | 114 | 6 | 14 | 225 | 18 | 220 | 1.26e-40 | 139 |
| Msa0724340 | MtrunA17_Chr1g0196771 | 37.281 | 228 | 132 | 4 | 5 | 230 | 3 | 221 | 1.89e-38 | 133 |
| Msa0724340 | MtrunA17_Chr5g0433801 | 37.143 | 210 | 121 | 5 | 14 | 222 | 15 | 214 | 9.65e-38 | 131 |
| Msa0724340 | MtrunA17_Chr8g0357211 | 38.393 | 224 | 129 | 4 | 3 | 226 | 2 | 216 | 8.26e-37 | 129 |
| Msa0724340 | MtrunA17_Chr8g0357241 | 37.500 | 224 | 131 | 4 | 3 | 226 | 2 | 216 | 1.64e-36 | 128 |
| Msa0724340 | MtrunA17_Chr4g0069471 | 41.530 | 183 | 98 | 5 | 4 | 185 | 24 | 198 | 7.85e-34 | 120 |
| Msa0724340 | MtrunA17_Chr5g0415421 | 72.973 | 74 | 20 | 0 | 29 | 102 | 11 | 84 | 3.66e-29 | 106 |
| Msa0724340 | MtrunA17_Chr2g0313561 | 60.938 | 64 | 23 | 1 | 49 | 112 | 2 | 63 | 8.66e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724340 | AT1G10360.1 | 55.263 | 228 | 101 | 1 | 1 | 228 | 1 | 227 | 6.57e-85 | 252 |
| Msa0724340 | AT1G10370.1 | 57.273 | 220 | 93 | 1 | 1 | 220 | 1 | 219 | 7.75e-84 | 249 |
| Msa0724340 | AT1G59700.1 | 48.035 | 229 | 117 | 2 | 5 | 232 | 6 | 233 | 2.93e-73 | 223 |
| Msa0724340 | AT1G59670.1 | 48.198 | 222 | 113 | 2 | 5 | 225 | 6 | 226 | 6.96e-71 | 216 |
| Msa0724340 | AT1G27130.1 | 47.982 | 223 | 111 | 3 | 1 | 220 | 1 | 221 | 1.98e-64 | 200 |
| Msa0724340 | AT1G27140.1 | 44.737 | 228 | 120 | 3 | 1 | 224 | 1 | 226 | 5.74e-61 | 191 |
| Msa0724340 | AT1G69930.1 | 46.512 | 215 | 113 | 1 | 6 | 220 | 13 | 225 | 6.38e-61 | 191 |
| Msa0724340 | AT1G69920.1 | 42.986 | 221 | 122 | 2 | 2 | 220 | 31 | 249 | 3.01e-57 | 182 |
| Msa0724340 | AT2G29420.1 | 35.714 | 224 | 136 | 3 | 3 | 226 | 7 | 222 | 1.14e-46 | 154 |
| Msa0724340 | AT2G29490.1 | 39.070 | 215 | 122 | 4 | 4 | 217 | 6 | 212 | 1.22e-44 | 149 |
| Msa0724340 | AT3G09270.1 | 37.900 | 219 | 128 | 3 | 5 | 222 | 6 | 217 | 1.75e-44 | 149 |
| Msa0724340 | AT1G78340.1 | 39.713 | 209 | 111 | 4 | 14 | 219 | 13 | 209 | 4.71e-42 | 142 |
| Msa0724340 | AT2G29470.1 | 37.611 | 226 | 129 | 6 | 6 | 228 | 8 | 224 | 1.18e-41 | 142 |
| Msa0724340 | AT2G29450.1 | 35.242 | 227 | 139 | 3 | 4 | 229 | 5 | 224 | 7.70e-41 | 139 |
| Msa0724340 | AT1G78320.1 | 41.463 | 205 | 109 | 5 | 14 | 217 | 13 | 207 | 1.21e-40 | 139 |
| Msa0724340 | AT2G29480.1 | 36.652 | 221 | 131 | 4 | 6 | 225 | 8 | 220 | 1.27e-40 | 139 |
| Msa0724340 | AT2G29460.1 | 36.444 | 225 | 132 | 5 | 4 | 226 | 6 | 221 | 4.80e-40 | 137 |
| Msa0724340 | AT1G78380.1 | 36.444 | 225 | 134 | 4 | 3 | 227 | 2 | 217 | 7.24e-39 | 134 |
| Msa0724340 | AT1G17170.1 | 39.512 | 205 | 114 | 4 | 14 | 218 | 13 | 207 | 8.55e-39 | 134 |
| Msa0724340 | AT1G17190.1 | 37.557 | 221 | 123 | 4 | 1 | 218 | 1 | 209 | 1.12e-38 | 134 |
| Msa0724340 | AT1G78370.1 | 34.466 | 206 | 126 | 3 | 14 | 219 | 13 | 209 | 2.34e-38 | 133 |
| Msa0724340 | AT1G17180.1 | 36.620 | 213 | 126 | 4 | 14 | 226 | 13 | 216 | 6.70e-38 | 132 |
| Msa0724340 | AT2G29440.1 | 35.242 | 227 | 136 | 5 | 5 | 229 | 6 | 223 | 6.84e-38 | 132 |
| Msa0724340 | AT3G43800.1 | 36.530 | 219 | 130 | 4 | 1 | 217 | 1 | 212 | 9.57e-37 | 129 |
| Msa0724340 | AT1G53680.1 | 38.049 | 205 | 118 | 4 | 14 | 217 | 16 | 212 | 3.13e-36 | 127 |
| Msa0724340 | AT1G78360.1 | 38.208 | 212 | 121 | 5 | 8 | 218 | 7 | 209 | 4.43e-35 | 124 |
| Msa0724340 | AT5G62480.1 | 33.036 | 224 | 145 | 3 | 4 | 224 | 7 | 228 | 5.71e-35 | 125 |
| Msa0724340 | AT1G74590.1 | 30.631 | 222 | 151 | 2 | 8 | 229 | 10 | 228 | 4.97e-33 | 119 |
| Msa0724340 | AT1G78320.2 | 33.171 | 205 | 99 | 5 | 14 | 217 | 13 | 180 | 1.02e-23 | 94.4 |
| Msa0724340 | AT5G62480.2 | 26.339 | 224 | 134 | 3 | 4 | 224 | 7 | 202 | 3.33e-20 | 85.9 |
Find 40 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAGCCATTGCGAAATTT+TGG | 0.144442 | 5_1:+22655840 | Msa0724340:CDS |
| AGACTCCTGCTTTGGTAAAA+TGG | 0.152155 | 5_1:+22657579 | Msa0724340:CDS |
| TCCACAAGTTTATCAGTTTC+TGG | 0.176738 | 5_1:-22657644 | None:intergenic |
| GGATTTCTTGATATTGCTTT+TGG | 0.201655 | 5_1:+22657491 | Msa0724340:CDS |
| CTGAAGAAGCAGGTCACTTT+TGG | 0.224815 | 5_1:-22655678 | None:intergenic |
| TTCATCAAGCACCTTCTTTC+CGG | 0.226817 | 5_1:-22657552 | None:intergenic |
| TTGAATATATTGATGAAGTT+TGG | 0.240973 | 5_1:+22655774 | Msa0724340:CDS |
| TACAAATGACTTGAAGCTTT+TGG | 0.262387 | 5_1:+22655565 | Msa0724340:CDS |
| CTTCTTTGACTCGTCATCTT+TGG | 0.273647 | 5_1:-22657372 | None:intergenic |
| AATCCAATCCTTTGATGTTA+AGG | 0.308526 | 5_1:-22655628 | None:intergenic |
| AAAATCCCAGTTCTCATTCA+TGG | 0.351236 | 5_1:+22655719 | Msa0724340:CDS |
| ATCCAATCCTTTGATGTTAA+GGG | 0.362609 | 5_1:-22655627 | None:intergenic |
| GACTCCTGCTTTGGTAAAAT+GGG | 0.372515 | 5_1:+22657580 | Msa0724340:CDS |
| TGCCCTTAACATCAAAGGAT+TGG | 0.392813 | 5_1:+22655625 | Msa0724340:CDS |
| TGCTGCTGATCCTGCTGTGA+AGG | 0.408812 | 5_1:+22657613 | Msa0724340:CDS |
| TTATCTCCATGAATGAGAAC+TGG | 0.409182 | 5_1:-22655725 | None:intergenic |
| GAAACATTTCCCAATTACTT+TGG | 0.420430 | 5_1:-22657707 | None:intergenic |
| TGAAACAAAGACTCCTGCTT+TGG | 0.445963 | 5_1:+22657571 | Msa0724340:CDS |
| TGGTATAATTCATCGCGAAA+TGG | 0.479430 | 5_1:+22657341 | Msa0724340:CDS |
| TAAACTTGTGGAGTTTGCTA+AGG | 0.485321 | 5_1:+22657655 | Msa0724340:CDS |
| TATGATTGCAGATTCACAAA+TGG | 0.490176 | 5_1:-22655750 | None:intergenic |
| GTGCTATTTGAGTTGGTTGA+GGG | 0.495242 | 5_1:+22657514 | Msa0724340:CDS |
| AAAATTGCCCTTAACATCAA+AGG | 0.511770 | 5_1:+22655620 | Msa0724340:CDS |
| GCTGCTGATCCTGCTGTGAA+GGG | 0.520880 | 5_1:+22657614 | Msa0724340:CDS |
| AAATACCTTGTCATCGATGT+AGG | 0.523632 | 5_1:-22655867 | None:intergenic |
| GGTGCTATTTGAGTTGGTTG+AGG | 0.524959 | 5_1:+22657513 | Msa0724340:CDS |
| GCTCGATCATAAGCATTTGA+AGG | 0.528885 | 5_1:-22655824 | None:intergenic |
| GATCATAAGCATTTGAAGGA+AGG | 0.533721 | 5_1:-22655820 | None:intergenic |
| TGAGAAAATGACCGGAAAGA+AGG | 0.538021 | 5_1:+22657541 | Msa0724340:CDS |
| CAAAGATGACGAGTCAAAGA+AGG | 0.547775 | 5_1:+22657373 | Msa0724340:CDS |
| AAACTTGTGGAGTTTGCTAA+GGG | 0.551366 | 5_1:+22657656 | Msa0724340:CDS |
| GGTAGAACTCCCTTCACAGC+AGG | 0.557376 | 5_1:-22657623 | None:intergenic |
| ACCAGAAACTGATAAACTTG+TGG | 0.558982 | 5_1:+22657643 | Msa0724340:CDS |
| AGGGTCACTGAGAAAATGAC+CGG | 0.569435 | 5_1:+22657533 | Msa0724340:CDS |
| TATCTCCATGAATGAGAACT+GGG | 0.572303 | 5_1:-22655724 | None:intergenic |
| CTCAATGCAAATGGACTGAA+CGG | 0.576698 | 5_1:-22655593 | None:intergenic |
| GTGATCAACAAGTATAGTGA+AGG | 0.581995 | 5_1:+22657440 | Msa0724340:CDS |
| CAGGATTGGACTGAAGAAGC+AGG | 0.605691 | 5_1:-22655688 | None:intergenic |
| GGCAACCCAAAATTTCGCAA+TGG | 0.635242 | 5_1:-22655846 | None:intergenic |
| GGTTGCCTACATCGATGACA+AGG | 0.651864 | 5_1:+22655862 | Msa0724340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATTAAAATCTTATAA+AGG | - | chr5_1:22655915-22655934 | None:intergenic | 10.0% |
| !! | ACACTAAATTAATATTTATA+CGG | - | chr5_1:22656387-22656406 | None:intergenic | 10.0% |
| !! | AAAAAAAAACTTATATTGTA+TGG | - | chr5_1:22656760-22656779 | None:intergenic | 10.0% |
| !! | AAATTAAAAGATATTAAAGT+CGG | + | chr5_1:22656893-22656912 | Msa0724340:intron | 10.0% |
| !! | AAAAGATTAAAATCTTATAA+AGG | - | chr5_1:22655915-22655934 | None:intergenic | 10.0% |
| !! | ACACTAAATTAATATTTATA+CGG | - | chr5_1:22656387-22656406 | None:intergenic | 10.0% |
| !! | AAAAAAAAACTTATATTGTA+TGG | - | chr5_1:22656760-22656779 | None:intergenic | 10.0% |
| !! | AAATTAAAAGATATTAAAGT+CGG | + | chr5_1:22656893-22656912 | Msa0724340:intron | 10.0% |
| !!! | AAAAGTTCTAACTATATATA+TGG | - | chr5_1:22656180-22656199 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATCCATTTGTAT+CGG | - | chr5_1:22656638-22656657 | None:intergenic | 15.0% |
| !! | TACAAATGGATAAAAAAAAA+TGG | + | chr5_1:22656639-22656658 | Msa0724340:intron | 15.0% |
| !!! | ATATTGTTTGTTATTGTTTT+TGG | + | chr5_1:22657300-22657319 | Msa0724340:intron | 15.0% |
| !!! | AAAAGTTCTAACTATATATA+TGG | - | chr5_1:22656180-22656199 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATCCATTTGTAT+CGG | - | chr5_1:22656638-22656657 | None:intergenic | 15.0% |
| !! | TACAAATGGATAAAAAAAAA+TGG | + | chr5_1:22656639-22656658 | Msa0724340:intron | 15.0% |
| !!! | ATATTGTTTGTTATTGTTTT+TGG | + | chr5_1:22657300-22657319 | Msa0724340:intron | 15.0% |
| !! | TTGAATATATTGATGAAGTT+TGG | + | chr5_1:22655774-22655793 | Msa0724340:CDS | 20.0% |
| !! | ATAAAAATTACTCAAAGACA+TGG | - | chr5_1:22655946-22655965 | None:intergenic | 20.0% |
| !! | AAAAAAATCATATACCATGT+TGG | + | chr5_1:22656009-22656028 | Msa0724340:intron | 20.0% |
| !! | ATCTAGAAATTTCAATAAGT+GGG | + | chr5_1:22656459-22656478 | Msa0724340:intron | 20.0% |
| !! | TATAACAATGTCATCTATAT+TGG | - | chr5_1:22656534-22656553 | None:intergenic | 20.0% |
| !! | TACTTAGTATTAAAGACTAA+AGG | - | chr5_1:22656997-22657016 | None:intergenic | 20.0% |
| !! | TTTAATACTAAGTAGTATCA+TGG | + | chr5_1:22657003-22657022 | Msa0724340:intron | 20.0% |
| !! | GCAATATGAAATTGTATTAT+GGG | + | chr5_1:22657069-22657088 | Msa0724340:intron | 20.0% |
| !! | CAATATGAAATTGTATTATG+GGG | + | chr5_1:22657070-22657089 | Msa0724340:intron | 20.0% |
| !! | ATCTAAATTTACATAGCTAT+TGG | + | chr5_1:22657098-22657117 | Msa0724340:intron | 20.0% |
| !!! | TTATTGTTTTTGGTTTCAAT+TGG | + | chr5_1:22657310-22657329 | Msa0724340:intron | 20.0% |
| !!! | TATTGTTTTTGGTTTCAATT+GGG | + | chr5_1:22657311-22657330 | Msa0724340:intron | 20.0% |
| !! | TTGAATATATTGATGAAGTT+TGG | + | chr5_1:22655774-22655793 | Msa0724340:CDS | 20.0% |
| !! | ATAAAAATTACTCAAAGACA+TGG | - | chr5_1:22655946-22655965 | None:intergenic | 20.0% |
| !! | AAAAAAATCATATACCATGT+TGG | + | chr5_1:22656009-22656028 | Msa0724340:intron | 20.0% |
| !! | ATCTAGAAATTTCAATAAGT+GGG | + | chr5_1:22656459-22656478 | Msa0724340:intron | 20.0% |
| !! | TATAACAATGTCATCTATAT+TGG | - | chr5_1:22656534-22656553 | None:intergenic | 20.0% |
| !! | TACTTAGTATTAAAGACTAA+AGG | - | chr5_1:22656997-22657016 | None:intergenic | 20.0% |
| !! | TTTAATACTAAGTAGTATCA+TGG | + | chr5_1:22657003-22657022 | Msa0724340:intron | 20.0% |
| !! | GCAATATGAAATTGTATTAT+GGG | + | chr5_1:22657069-22657088 | Msa0724340:intron | 20.0% |
| !! | CAATATGAAATTGTATTATG+GGG | + | chr5_1:22657070-22657089 | Msa0724340:intron | 20.0% |
| !! | ATCTAAATTTACATAGCTAT+TGG | + | chr5_1:22657098-22657117 | Msa0724340:intron | 20.0% |
| !!! | TTATTGTTTTTGGTTTCAAT+TGG | + | chr5_1:22657310-22657329 | Msa0724340:intron | 20.0% |
| !!! | TATTGTTTTTGGTTTCAATT+GGG | + | chr5_1:22657311-22657330 | Msa0724340:intron | 20.0% |
| !! | ATTTTTACTCTCAATGCAAA+TGG | - | chr5_1:22655605-22655624 | None:intergenic | 25.0% |
| !!! | GATTTTTTTGTATACAGGAT+TGG | - | chr5_1:22655705-22655724 | None:intergenic | 25.0% |
| ! | AAAAAAACATTGTGCATTGT+GGG | - | chr5_1:22656057-22656076 | None:intergenic | 25.0% |
| ! | AAAAAAAACATTGTGCATTG+TGG | - | chr5_1:22656058-22656077 | None:intergenic | 25.0% |
| !!! | GACTAGTTCTTGTTTTATTA+GGG | - | chr5_1:22656303-22656322 | None:intergenic | 25.0% |
| ! | ATTTCTCAATAACTAAAAGC+AGG | + | chr5_1:22656431-22656450 | Msa0724340:intron | 25.0% |
| ! | TTTCTCAATAACTAAAAGCA+GGG | + | chr5_1:22656432-22656451 | Msa0724340:intron | 25.0% |
| ! | GATCTAGAAATTTCAATAAG+TGG | + | chr5_1:22656458-22656477 | Msa0724340:intron | 25.0% |
| ! | TCTAGAAATTTCAATAAGTG+GGG | + | chr5_1:22656460-22656479 | Msa0724340:intron | 25.0% |
| ! | AGAGTCCTTCAAAATTAATT+TGG | + | chr5_1:22656673-22656692 | Msa0724340:intron | 25.0% |
| ! | AAGTGAGAGAAGTTTATATT+GGG | - | chr5_1:22656921-22656940 | None:intergenic | 25.0% |
| ! | TAAGTGAGAGAAGTTTATAT+TGG | - | chr5_1:22656922-22656941 | None:intergenic | 25.0% |
| ! | GGCAATATGAAATTGTATTA+TGG | + | chr5_1:22657068-22657087 | Msa0724340:intron | 25.0% |
| !! | TTCATCATATACTTTTAGTC+AGG | - | chr5_1:22657184-22657203 | None:intergenic | 25.0% |
| ! | AACAAACAATATGATTCAGT+AGG | - | chr5_1:22657292-22657311 | None:intergenic | 25.0% |
| !!! | GATTTCTTGATATTGCTTTT+GGG | + | chr5_1:22657492-22657511 | Msa0724340:CDS | 25.0% |
| !! | ATTTTTACTCTCAATGCAAA+TGG | - | chr5_1:22655605-22655624 | None:intergenic | 25.0% |
| !!! | GATTTTTTTGTATACAGGAT+TGG | - | chr5_1:22655705-22655724 | None:intergenic | 25.0% |
| ! | AAAAAAACATTGTGCATTGT+GGG | - | chr5_1:22656057-22656076 | None:intergenic | 25.0% |
| ! | AAAAAAAACATTGTGCATTG+TGG | - | chr5_1:22656058-22656077 | None:intergenic | 25.0% |
| !!! | GACTAGTTCTTGTTTTATTA+GGG | - | chr5_1:22656303-22656322 | None:intergenic | 25.0% |
| ! | ATTTCTCAATAACTAAAAGC+AGG | + | chr5_1:22656431-22656450 | Msa0724340:intron | 25.0% |
| ! | TTTCTCAATAACTAAAAGCA+GGG | + | chr5_1:22656432-22656451 | Msa0724340:intron | 25.0% |
| ! | GATCTAGAAATTTCAATAAG+TGG | + | chr5_1:22656458-22656477 | Msa0724340:intron | 25.0% |
| ! | TCTAGAAATTTCAATAAGTG+GGG | + | chr5_1:22656460-22656479 | Msa0724340:intron | 25.0% |
| ! | AGAGTCCTTCAAAATTAATT+TGG | + | chr5_1:22656673-22656692 | Msa0724340:intron | 25.0% |
| ! | AAGTGAGAGAAGTTTATATT+GGG | - | chr5_1:22656921-22656940 | None:intergenic | 25.0% |
| ! | TAAGTGAGAGAAGTTTATAT+TGG | - | chr5_1:22656922-22656941 | None:intergenic | 25.0% |
| ! | GGCAATATGAAATTGTATTA+TGG | + | chr5_1:22657068-22657087 | Msa0724340:intron | 25.0% |
| !! | TTCATCATATACTTTTAGTC+AGG | - | chr5_1:22657184-22657203 | None:intergenic | 25.0% |
| ! | AACAAACAATATGATTCAGT+AGG | - | chr5_1:22657292-22657311 | None:intergenic | 25.0% |
| !!! | GATTTCTTGATATTGCTTTT+GGG | + | chr5_1:22657492-22657511 | Msa0724340:CDS | 25.0% |
| ! | TACAAATGACTTGAAGCTTT+TGG | + | chr5_1:22655565-22655584 | Msa0724340:CDS | 30.0% |
| ! | ACAAATGACTTGAAGCTTTT+GGG | + | chr5_1:22655566-22655585 | Msa0724340:CDS | 30.0% |
| AAAATTGCCCTTAACATCAA+AGG | + | chr5_1:22655620-22655639 | Msa0724340:CDS | 30.0% | |
| ATCCAATCCTTTGATGTTAA+GGG | - | chr5_1:22655630-22655649 | None:intergenic | 30.0% | |
| AATCCAATCCTTTGATGTTA+AGG | - | chr5_1:22655631-22655650 | None:intergenic | 30.0% | |
| !!! | ACTGGGATTTTTTTGTATAC+AGG | - | chr5_1:22655710-22655729 | None:intergenic | 30.0% |
| TATGATTGCAGATTCACAAA+TGG | - | chr5_1:22655753-22655772 | None:intergenic | 30.0% | |
| AAAAAACATTGTGCATTGTG+GGG | - | chr5_1:22656056-22656075 | None:intergenic | 30.0% | |
| !!! | AGTTCTTGTTTTATTAGGGT+CGG | - | chr5_1:22656299-22656318 | None:intergenic | 30.0% |
| !!! | GGACTAGTTCTTGTTTTATT+AGG | - | chr5_1:22656304-22656323 | None:intergenic | 30.0% |
| GATATAGGTCTTCGATATTA+AGG | - | chr5_1:22656616-22656635 | None:intergenic | 30.0% | |
| TATCCATTTGTATCGGATAT+AGG | - | chr5_1:22656631-22656650 | None:intergenic | 30.0% | |
| ! | CGCAACCAAATTAATTTTGA+AGG | - | chr5_1:22656681-22656700 | None:intergenic | 30.0% |
| AGTGAGAGAAGTTTATATTG+GGG | - | chr5_1:22656920-22656939 | None:intergenic | 30.0% | |
| GTATTAAAGACTAAAGGCTA+AGG | - | chr5_1:22656991-22657010 | None:intergenic | 30.0% | |
| ! | AAACTTGTTTAGTGCACTAA+AGG | - | chr5_1:22657041-22657060 | None:intergenic | 30.0% |
| ! | TGCACTAAACAAGTTTTTGT+GGG | + | chr5_1:22657045-22657064 | Msa0724340:intron | 30.0% |
| TTACAAAAGTAATGCACAAG+TGG | + | chr5_1:22657121-22657140 | Msa0724340:intron | 30.0% | |
| TACAAAAGTAATGCACAAGT+GGG | + | chr5_1:22657122-22657141 | Msa0724340:intron | 30.0% | |
| ! | AAATGGAAGAAGTTCTTTTG+AGG | + | chr5_1:22657408-22657427 | Msa0724340:CDS | 30.0% |
| !!! | AGTGAAGGAAATGTCTTTTT+TGG | + | chr5_1:22657455-22657474 | Msa0724340:CDS | 30.0% |
| !!! | TTTTTTGGAGGAGAGAAAAT+TGG | + | chr5_1:22657470-22657489 | Msa0724340:CDS | 30.0% |
| ! | GGATTTCTTGATATTGCTTT+TGG | + | chr5_1:22657491-22657510 | Msa0724340:CDS | 30.0% |
| ! | TACAAATGACTTGAAGCTTT+TGG | + | chr5_1:22655565-22655584 | Msa0724340:CDS | 30.0% |
| ! | ACAAATGACTTGAAGCTTTT+GGG | + | chr5_1:22655566-22655585 | Msa0724340:CDS | 30.0% |
| AAAATTGCCCTTAACATCAA+AGG | + | chr5_1:22655620-22655639 | Msa0724340:CDS | 30.0% | |
| ATCCAATCCTTTGATGTTAA+GGG | - | chr5_1:22655630-22655649 | None:intergenic | 30.0% | |
| AATCCAATCCTTTGATGTTA+AGG | - | chr5_1:22655631-22655650 | None:intergenic | 30.0% | |
| !!! | ACTGGGATTTTTTTGTATAC+AGG | - | chr5_1:22655710-22655729 | None:intergenic | 30.0% |
| TATGATTGCAGATTCACAAA+TGG | - | chr5_1:22655753-22655772 | None:intergenic | 30.0% | |
| AAAAAACATTGTGCATTGTG+GGG | - | chr5_1:22656056-22656075 | None:intergenic | 30.0% | |
| !!! | AGTTCTTGTTTTATTAGGGT+CGG | - | chr5_1:22656299-22656318 | None:intergenic | 30.0% |
| !!! | GGACTAGTTCTTGTTTTATT+AGG | - | chr5_1:22656304-22656323 | None:intergenic | 30.0% |
| GATATAGGTCTTCGATATTA+AGG | - | chr5_1:22656616-22656635 | None:intergenic | 30.0% | |
| TATCCATTTGTATCGGATAT+AGG | - | chr5_1:22656631-22656650 | None:intergenic | 30.0% | |
| ! | CGCAACCAAATTAATTTTGA+AGG | - | chr5_1:22656681-22656700 | None:intergenic | 30.0% |
| AGTGAGAGAAGTTTATATTG+GGG | - | chr5_1:22656920-22656939 | None:intergenic | 30.0% | |
| GTATTAAAGACTAAAGGCTA+AGG | - | chr5_1:22656991-22657010 | None:intergenic | 30.0% | |
| ! | AAACTTGTTTAGTGCACTAA+AGG | - | chr5_1:22657041-22657060 | None:intergenic | 30.0% |
| ! | TGCACTAAACAAGTTTTTGT+GGG | + | chr5_1:22657045-22657064 | Msa0724340:intron | 30.0% |
| TTACAAAAGTAATGCACAAG+TGG | + | chr5_1:22657121-22657140 | Msa0724340:intron | 30.0% | |
| TACAAAAGTAATGCACAAGT+GGG | + | chr5_1:22657122-22657141 | Msa0724340:intron | 30.0% | |
| ! | AAATGGAAGAAGTTCTTTTG+AGG | + | chr5_1:22657408-22657427 | Msa0724340:CDS | 30.0% |
| !!! | AGTGAAGGAAATGTCTTTTT+TGG | + | chr5_1:22657455-22657474 | Msa0724340:CDS | 30.0% |
| !!! | TTTTTTGGAGGAGAGAAAAT+TGG | + | chr5_1:22657470-22657489 | Msa0724340:CDS | 30.0% |
| ! | GGATTTCTTGATATTGCTTT+TGG | + | chr5_1:22657491-22657510 | Msa0724340:CDS | 30.0% |
| AAAATCCCAGTTCTCATTCA+TGG | + | chr5_1:22655719-22655738 | Msa0724340:CDS | 35.0% | |
| TATCTCCATGAATGAGAACT+GGG | - | chr5_1:22655727-22655746 | None:intergenic | 35.0% | |
| TTATCTCCATGAATGAGAAC+TGG | - | chr5_1:22655728-22655747 | None:intergenic | 35.0% | |
| GATCATAAGCATTTGAAGGA+AGG | - | chr5_1:22655823-22655842 | None:intergenic | 35.0% | |
| AAATACCTTGTCATCGATGT+AGG | - | chr5_1:22655870-22655889 | None:intergenic | 35.0% | |
| AATTACTCAAAGACATGGAC+AGG | - | chr5_1:22655941-22655960 | None:intergenic | 35.0% | |
| ! | TTTTCTCGATAGTGATGCTA+GGG | - | chr5_1:22655993-22656012 | None:intergenic | 35.0% |
| ! | TTTTTCTCGATAGTGATGCT+AGG | - | chr5_1:22655994-22656013 | None:intergenic | 35.0% |
| ! | CATATACCATGTTGGTTAGA+TGG | + | chr5_1:22656017-22656036 | Msa0724340:intron | 35.0% |
| CTAATTCCATCTAACCAACA+TGG | - | chr5_1:22656026-22656045 | None:intergenic | 35.0% | |
| !!! | TTTTTTACAAAGCTCAGCCA+TGG | + | chr5_1:22656140-22656159 | Msa0724340:intron | 35.0% |
| ! | TTTTTACAAAGCTCAGCCAT+GGG | + | chr5_1:22656141-22656160 | Msa0724340:intron | 35.0% |
| !!! | ACTTTTGAAACCTGCTAACA+TGG | + | chr5_1:22656194-22656213 | Msa0724340:intron | 35.0% |
| TCAATAACTAAAAGCAGGGA+CGG | + | chr5_1:22656436-22656455 | Msa0724340:intron | 35.0% | |
| AGACCTATATCCGATACAAA+TGG | + | chr5_1:22656625-22656644 | Msa0724340:intron | 35.0% | |
| ! | AAATTAATTTGGTTGCGCGA+AGG | + | chr5_1:22656684-22656703 | Msa0724340:intron | 35.0% |
| ! | ATGGTCATTAAAGAGTGCAT+CGG | - | chr5_1:22656741-22656760 | None:intergenic | 35.0% |
| TCTTGTTAACGAGTGTTTCT+GGG | - | chr5_1:22656868-22656887 | None:intergenic | 35.0% | |
| GATAAAGAAAAGTTGTGGAG+TGG | - | chr5_1:22656945-22656964 | None:intergenic | 35.0% | |
| CAGTCGATAAAGAAAAGTTG+TGG | - | chr5_1:22656950-22656969 | None:intergenic | 35.0% | |
| ACTAAAGGCTAAGGAAAATG+TGG | - | chr5_1:22656982-22657001 | None:intergenic | 35.0% | |
| ! | GTGCACTAAACAAGTTTTTG+TGG | + | chr5_1:22657044-22657063 | Msa0724340:intron | 35.0% |
| ! | GCACTAAACAAGTTTTTGTG+GGG | + | chr5_1:22657046-22657065 | Msa0724340:intron | 35.0% |
| ! | CACTAAACAAGTTTTTGTGG+GGG | + | chr5_1:22657047-22657066 | Msa0724340:intron | 35.0% |
| ACAAAAGTAATGCACAAGTG+GGG | + | chr5_1:22657123-22657142 | Msa0724340:intron | 35.0% | |
| ATCTACTTTGTGCTAATTGG+GGG | - | chr5_1:22657156-22657175 | None:intergenic | 35.0% | |
| GATCTACTTTGTGCTAATTG+GGG | - | chr5_1:22657157-22657176 | None:intergenic | 35.0% | |
| GGATCTACTTTGTGCTAATT+GGG | - | chr5_1:22657158-22657177 | None:intergenic | 35.0% | |
| ! | CATATACTTTTAGTCAGGCA+CGG | - | chr5_1:22657179-22657198 | None:intergenic | 35.0% |
| TGGTATAATTCATCGCGAAA+TGG | + | chr5_1:22657341-22657360 | Msa0724340:CDS | 35.0% | |
| !! | GAAGGCATATTTTGAGCAAA+TGG | + | chr5_1:22657391-22657410 | Msa0724340:CDS | 35.0% |
| GTGATCAACAAGTATAGTGA+AGG | + | chr5_1:22657440-22657459 | Msa0724340:CDS | 35.0% | |
| !!! | GAAGGAAATGTCTTTTTTGG+AGG | + | chr5_1:22657458-22657477 | Msa0724340:CDS | 35.0% |
| ACCAGAAACTGATAAACTTG+TGG | + | chr5_1:22657643-22657662 | Msa0724340:CDS | 35.0% | |
| TCCACAAGTTTATCAGTTTC+TGG | - | chr5_1:22657647-22657666 | None:intergenic | 35.0% | |
| !! | TAAACTTGTGGAGTTTGCTA+AGG | + | chr5_1:22657655-22657674 | Msa0724340:CDS | 35.0% |
| !! | AAACTTGTGGAGTTTGCTAA+GGG | + | chr5_1:22657656-22657675 | Msa0724340:CDS | 35.0% |
| !! | TAAGGGTTTTGTGCAAAGAA+TGG | + | chr5_1:22657673-22657692 | Msa0724340:CDS | 35.0% |
| AAAATCCCAGTTCTCATTCA+TGG | + | chr5_1:22655719-22655738 | Msa0724340:CDS | 35.0% | |
| TATCTCCATGAATGAGAACT+GGG | - | chr5_1:22655727-22655746 | None:intergenic | 35.0% | |
| TTATCTCCATGAATGAGAAC+TGG | - | chr5_1:22655728-22655747 | None:intergenic | 35.0% | |
| GATCATAAGCATTTGAAGGA+AGG | - | chr5_1:22655823-22655842 | None:intergenic | 35.0% | |
| AAATACCTTGTCATCGATGT+AGG | - | chr5_1:22655870-22655889 | None:intergenic | 35.0% | |
| AATTACTCAAAGACATGGAC+AGG | - | chr5_1:22655941-22655960 | None:intergenic | 35.0% | |
| ! | TTTTCTCGATAGTGATGCTA+GGG | - | chr5_1:22655993-22656012 | None:intergenic | 35.0% |
| ! | TTTTTCTCGATAGTGATGCT+AGG | - | chr5_1:22655994-22656013 | None:intergenic | 35.0% |
| ! | CATATACCATGTTGGTTAGA+TGG | + | chr5_1:22656017-22656036 | Msa0724340:intron | 35.0% |
| CTAATTCCATCTAACCAACA+TGG | - | chr5_1:22656026-22656045 | None:intergenic | 35.0% | |
| !!! | TTTTTTACAAAGCTCAGCCA+TGG | + | chr5_1:22656140-22656159 | Msa0724340:intron | 35.0% |
| ! | TTTTTACAAAGCTCAGCCAT+GGG | + | chr5_1:22656141-22656160 | Msa0724340:intron | 35.0% |
| !!! | ACTTTTGAAACCTGCTAACA+TGG | + | chr5_1:22656194-22656213 | Msa0724340:intron | 35.0% |
| TCAATAACTAAAAGCAGGGA+CGG | + | chr5_1:22656436-22656455 | Msa0724340:intron | 35.0% | |
| AGACCTATATCCGATACAAA+TGG | + | chr5_1:22656625-22656644 | Msa0724340:intron | 35.0% | |
| ! | AAATTAATTTGGTTGCGCGA+AGG | + | chr5_1:22656684-22656703 | Msa0724340:intron | 35.0% |
| ! | ATGGTCATTAAAGAGTGCAT+CGG | - | chr5_1:22656741-22656760 | None:intergenic | 35.0% |
| TCTTGTTAACGAGTGTTTCT+GGG | - | chr5_1:22656868-22656887 | None:intergenic | 35.0% | |
| GATAAAGAAAAGTTGTGGAG+TGG | - | chr5_1:22656945-22656964 | None:intergenic | 35.0% | |
| CAGTCGATAAAGAAAAGTTG+TGG | - | chr5_1:22656950-22656969 | None:intergenic | 35.0% | |
| ACTAAAGGCTAAGGAAAATG+TGG | - | chr5_1:22656982-22657001 | None:intergenic | 35.0% | |
| ! | GTGCACTAAACAAGTTTTTG+TGG | + | chr5_1:22657044-22657063 | Msa0724340:intron | 35.0% |
| ! | GCACTAAACAAGTTTTTGTG+GGG | + | chr5_1:22657046-22657065 | Msa0724340:intron | 35.0% |
| ! | CACTAAACAAGTTTTTGTGG+GGG | + | chr5_1:22657047-22657066 | Msa0724340:intron | 35.0% |
| ACAAAAGTAATGCACAAGTG+GGG | + | chr5_1:22657123-22657142 | Msa0724340:intron | 35.0% | |
| ATCTACTTTGTGCTAATTGG+GGG | - | chr5_1:22657156-22657175 | None:intergenic | 35.0% | |
| GATCTACTTTGTGCTAATTG+GGG | - | chr5_1:22657157-22657176 | None:intergenic | 35.0% | |
| GGATCTACTTTGTGCTAATT+GGG | - | chr5_1:22657158-22657177 | None:intergenic | 35.0% | |
| ! | CATATACTTTTAGTCAGGCA+CGG | - | chr5_1:22657179-22657198 | None:intergenic | 35.0% |
| TGGTATAATTCATCGCGAAA+TGG | + | chr5_1:22657341-22657360 | Msa0724340:CDS | 35.0% | |
| !! | GAAGGCATATTTTGAGCAAA+TGG | + | chr5_1:22657391-22657410 | Msa0724340:CDS | 35.0% |
| GTGATCAACAAGTATAGTGA+AGG | + | chr5_1:22657440-22657459 | Msa0724340:CDS | 35.0% | |
| !!! | GAAGGAAATGTCTTTTTTGG+AGG | + | chr5_1:22657458-22657477 | Msa0724340:CDS | 35.0% |
| ACCAGAAACTGATAAACTTG+TGG | + | chr5_1:22657643-22657662 | Msa0724340:CDS | 35.0% | |
| TCCACAAGTTTATCAGTTTC+TGG | - | chr5_1:22657647-22657666 | None:intergenic | 35.0% | |
| !! | TAAACTTGTGGAGTTTGCTA+AGG | + | chr5_1:22657655-22657674 | Msa0724340:CDS | 35.0% |
| !! | AAACTTGTGGAGTTTGCTAA+GGG | + | chr5_1:22657656-22657675 | Msa0724340:CDS | 35.0% |
| !! | TAAGGGTTTTGTGCAAAGAA+TGG | + | chr5_1:22657673-22657692 | Msa0724340:CDS | 35.0% |
| !! | CTCAATGCAAATGGACTGAA+CGG | - | chr5_1:22655596-22655615 | None:intergenic | 40.0% |
| TGCCCTTAACATCAAAGGAT+TGG | + | chr5_1:22655625-22655644 | Msa0724340:CDS | 40.0% | |
| !!! | TGAAGAAGCAGGTCACTTTT+GGG | - | chr5_1:22655680-22655699 | None:intergenic | 40.0% |
| GCTCGATCATAAGCATTTGA+AGG | - | chr5_1:22655827-22655846 | None:intergenic | 40.0% | |
| ! | ATCGAGCCATTGCGAAATTT+TGG | + | chr5_1:22655840-22655859 | Msa0724340:CDS | 40.0% |
| ! | TCGAGCCATTGCGAAATTTT+GGG | + | chr5_1:22655841-22655860 | Msa0724340:CDS | 40.0% |
| TTTCTCGATAGTGATGCTAG+GGG | - | chr5_1:22655992-22656011 | None:intergenic | 40.0% | |
| TCTTTCAACACCATGTTAGC+AGG | - | chr5_1:22656207-22656226 | None:intergenic | 40.0% | |
| AGGGTCGGACTACTATTAAA+TGG | - | chr5_1:22656284-22656303 | None:intergenic | 40.0% | |
| !! | AGGTCATTTGGACTTGCTAT+AGG | - | chr5_1:22656325-22656344 | None:intergenic | 40.0% |
| GCAAGTCCAAATGACCTAAA+CGG | + | chr5_1:22656328-22656347 | Msa0724340:intron | 40.0% | |
| ! | TGGTCATTAAAGAGTGCATC+GGG | - | chr5_1:22656740-22656759 | None:intergenic | 40.0% |
| ! | GTCTTGTTAACGAGTGTTTC+TGG | - | chr5_1:22656869-22656888 | None:intergenic | 40.0% |
| CGGATCTACTTTGTGCTAAT+TGG | - | chr5_1:22657159-22657178 | None:intergenic | 40.0% | |
| ! | CTTCTTTGACTCGTCATCTT+TGG | - | chr5_1:22657375-22657394 | None:intergenic | 40.0% |
| CAAAGATGACGAGTCAAAGA+AGG | + | chr5_1:22657373-22657392 | Msa0724340:CDS | 40.0% | |
| !!! | GGAAGAAGTTCTTTTGAGGT+TGG | + | chr5_1:22657412-22657431 | Msa0724340:CDS | 40.0% |
| !!! | CTTTTGGGTGCTATTTGAGT+TGG | + | chr5_1:22657507-22657526 | Msa0724340:CDS | 40.0% |
| !! | GTGCTATTTGAGTTGGTTGA+GGG | + | chr5_1:22657514-22657533 | Msa0724340:CDS | 40.0% |
| TGAGAAAATGACCGGAAAGA+AGG | + | chr5_1:22657541-22657560 | Msa0724340:CDS | 40.0% | |
| TTCATCAAGCACCTTCTTTC+CGG | - | chr5_1:22657555-22657574 | None:intergenic | 40.0% | |
| TGAAACAAAGACTCCTGCTT+TGG | + | chr5_1:22657571-22657590 | Msa0724340:CDS | 40.0% | |
| AGACTCCTGCTTTGGTAAAA+TGG | + | chr5_1:22657579-22657598 | Msa0724340:CDS | 40.0% | |
| GACTCCTGCTTTGGTAAAAT+GGG | + | chr5_1:22657580-22657599 | Msa0724340:CDS | 40.0% | |
| !! | CTCAATGCAAATGGACTGAA+CGG | - | chr5_1:22655596-22655615 | None:intergenic | 40.0% |
| TGCCCTTAACATCAAAGGAT+TGG | + | chr5_1:22655625-22655644 | Msa0724340:CDS | 40.0% | |
| !!! | TGAAGAAGCAGGTCACTTTT+GGG | - | chr5_1:22655680-22655699 | None:intergenic | 40.0% |
| GCTCGATCATAAGCATTTGA+AGG | - | chr5_1:22655827-22655846 | None:intergenic | 40.0% | |
| ! | ATCGAGCCATTGCGAAATTT+TGG | + | chr5_1:22655840-22655859 | Msa0724340:CDS | 40.0% |
| ! | TCGAGCCATTGCGAAATTTT+GGG | + | chr5_1:22655841-22655860 | Msa0724340:CDS | 40.0% |
| TTTCTCGATAGTGATGCTAG+GGG | - | chr5_1:22655992-22656011 | None:intergenic | 40.0% | |
| TCTTTCAACACCATGTTAGC+AGG | - | chr5_1:22656207-22656226 | None:intergenic | 40.0% | |
| AGGGTCGGACTACTATTAAA+TGG | - | chr5_1:22656284-22656303 | None:intergenic | 40.0% | |
| !! | AGGTCATTTGGACTTGCTAT+AGG | - | chr5_1:22656325-22656344 | None:intergenic | 40.0% |
| GCAAGTCCAAATGACCTAAA+CGG | + | chr5_1:22656328-22656347 | Msa0724340:intron | 40.0% | |
| ! | TGGTCATTAAAGAGTGCATC+GGG | - | chr5_1:22656740-22656759 | None:intergenic | 40.0% |
| ! | GTCTTGTTAACGAGTGTTTC+TGG | - | chr5_1:22656869-22656888 | None:intergenic | 40.0% |
| CGGATCTACTTTGTGCTAAT+TGG | - | chr5_1:22657159-22657178 | None:intergenic | 40.0% | |
| ! | CTTCTTTGACTCGTCATCTT+TGG | - | chr5_1:22657375-22657394 | None:intergenic | 40.0% |
| CAAAGATGACGAGTCAAAGA+AGG | + | chr5_1:22657373-22657392 | Msa0724340:CDS | 40.0% | |
| !!! | GGAAGAAGTTCTTTTGAGGT+TGG | + | chr5_1:22657412-22657431 | Msa0724340:CDS | 40.0% |
| !!! | CTTTTGGGTGCTATTTGAGT+TGG | + | chr5_1:22657507-22657526 | Msa0724340:CDS | 40.0% |
| !! | GTGCTATTTGAGTTGGTTGA+GGG | + | chr5_1:22657514-22657533 | Msa0724340:CDS | 40.0% |
| TGAGAAAATGACCGGAAAGA+AGG | + | chr5_1:22657541-22657560 | Msa0724340:CDS | 40.0% | |
| TTCATCAAGCACCTTCTTTC+CGG | - | chr5_1:22657555-22657574 | None:intergenic | 40.0% | |
| TGAAACAAAGACTCCTGCTT+TGG | + | chr5_1:22657571-22657590 | Msa0724340:CDS | 40.0% | |
| AGACTCCTGCTTTGGTAAAA+TGG | + | chr5_1:22657579-22657598 | Msa0724340:CDS | 40.0% | |
| GACTCCTGCTTTGGTAAAAT+GGG | + | chr5_1:22657580-22657599 | Msa0724340:CDS | 40.0% | |
| !!! | CAGGTCACTTTTGGGATTCA+TGG | - | chr5_1:22655672-22655691 | None:intergenic | 45.0% |
| !! | CTGAAGAAGCAGGTCACTTT+TGG | - | chr5_1:22655681-22655700 | None:intergenic | 45.0% |
| GGCAACCCAAAATTTCGCAA+TGG | - | chr5_1:22655849-22655868 | None:intergenic | 45.0% | |
| CACACACCGTTTAGGTCATT+TGG | - | chr5_1:22656337-22656356 | None:intergenic | 45.0% | |
| CTCTTTCACACACACCGTTT+AGG | - | chr5_1:22656345-22656364 | None:intergenic | 45.0% | |
| ! | GTCATTAAAGAGTGCATCGG+GGG | - | chr5_1:22656738-22656757 | None:intergenic | 45.0% |
| ! | GGTCATTAAAGAGTGCATCG+GGG | - | chr5_1:22656739-22656758 | None:intergenic | 45.0% |
| GGTTTCAATTGGGAGAGTAG+TGG | + | chr5_1:22657321-22657340 | Msa0724340:intron | 45.0% | |
| !! | GGTGCTATTTGAGTTGGTTG+AGG | + | chr5_1:22657513-22657532 | Msa0724340:CDS | 45.0% |
| AGGGTCACTGAGAAAATGAC+CGG | + | chr5_1:22657533-22657552 | Msa0724340:CDS | 45.0% | |
| ! | TCAGCCCATTTTACCAAAGC+AGG | - | chr5_1:22657587-22657606 | None:intergenic | 45.0% |
| !!! | CAGGTCACTTTTGGGATTCA+TGG | - | chr5_1:22655672-22655691 | None:intergenic | 45.0% |
| !! | CTGAAGAAGCAGGTCACTTT+TGG | - | chr5_1:22655681-22655700 | None:intergenic | 45.0% |
| GGCAACCCAAAATTTCGCAA+TGG | - | chr5_1:22655849-22655868 | None:intergenic | 45.0% | |
| CACACACCGTTTAGGTCATT+TGG | - | chr5_1:22656337-22656356 | None:intergenic | 45.0% | |
| CTCTTTCACACACACCGTTT+AGG | - | chr5_1:22656345-22656364 | None:intergenic | 45.0% | |
| ! | GTCATTAAAGAGTGCATCGG+GGG | - | chr5_1:22656738-22656757 | None:intergenic | 45.0% |
| ! | GGTCATTAAAGAGTGCATCG+GGG | - | chr5_1:22656739-22656758 | None:intergenic | 45.0% |
| GGTTTCAATTGGGAGAGTAG+TGG | + | chr5_1:22657321-22657340 | Msa0724340:intron | 45.0% | |
| !! | GGTGCTATTTGAGTTGGTTG+AGG | + | chr5_1:22657513-22657532 | Msa0724340:CDS | 45.0% |
| AGGGTCACTGAGAAAATGAC+CGG | + | chr5_1:22657533-22657552 | Msa0724340:CDS | 45.0% | |
| ! | TCAGCCCATTTTACCAAAGC+AGG | - | chr5_1:22657587-22657606 | None:intergenic | 45.0% |
| !!! | GTTTTTTTTTTTTTTTAATT+AGG | + | chr5_1:22656069-22656088 | Msa0724340:intron | 5.0% |
| !!! | GTTTTTTTTTTTTTTTAATT+AGG | + | chr5_1:22656069-22656088 | Msa0724340:intron | 5.0% |
| CAGGATTGGACTGAAGAAGC+AGG | - | chr5_1:22655691-22655710 | None:intergenic | 50.0% | |
| GGTTGCCTACATCGATGACA+AGG | + | chr5_1:22655862-22655881 | Msa0724340:CDS | 50.0% | |
| TGGACTCAGATTCTCTCCCA+TGG | - | chr5_1:22656160-22656179 | None:intergenic | 50.0% | |
| CAGGATTGGACTGAAGAAGC+AGG | - | chr5_1:22655691-22655710 | None:intergenic | 50.0% | |
| GGTTGCCTACATCGATGACA+AGG | + | chr5_1:22655862-22655881 | Msa0724340:CDS | 50.0% | |
| TGGACTCAGATTCTCTCCCA+TGG | - | chr5_1:22656160-22656179 | None:intergenic | 50.0% | |
| TGCTGCTGATCCTGCTGTGA+AGG | + | chr5_1:22657613-22657632 | Msa0724340:CDS | 55.0% | |
| GCTGCTGATCCTGCTGTGAA+GGG | + | chr5_1:22657614-22657633 | Msa0724340:CDS | 55.0% | |
| GGTAGAACTCCCTTCACAGC+AGG | - | chr5_1:22657626-22657645 | None:intergenic | 55.0% | |
| TGCTGCTGATCCTGCTGTGA+AGG | + | chr5_1:22657613-22657632 | Msa0724340:CDS | 55.0% | |
| GCTGCTGATCCTGCTGTGAA+GGG | + | chr5_1:22657614-22657633 | Msa0724340:CDS | 55.0% | |
| GGTAGAACTCCCTTCACAGC+AGG | - | chr5_1:22657626-22657645 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 22655560 | 22657715 | 22655560 | ID=Msa0724340;Name=Msa0724340 |
| chr5_1 | mRNA | 22655560 | 22657715 | 22655560 | ID=Msa0724340-mRNA-1;Parent=Msa0724340;Name=Msa0724340-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|232 |
| chr5_1 | exon | 22655560 | 22655883 | 22655560 | ID=Msa0724340-mRNA-1:exon:8556;Parent=Msa0724340-mRNA-1 |
| chr5_1 | exon | 22657341 | 22657715 | 22657341 | ID=Msa0724340-mRNA-1:exon:8557;Parent=Msa0724340-mRNA-1 |
| chr5_1 | CDS | 22655560 | 22655883 | 22655560 | ID=Msa0724340-mRNA-1:cds;Parent=Msa0724340-mRNA-1 |
| chr5_1 | CDS | 22657341 | 22657715 | 22657341 | ID=Msa0724340-mRNA-1:cds;Parent=Msa0724340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
