AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0053110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053110 MtrunA17_Chr1g0151681 97.175 531 8 1 1 531 1 524 0.0 1061
Msa0053110 MtrunA17_Chr4g0025521 35.739 291 157 7 250 523 217 494 7.06e-48 177
Msa0053110 MtrunA17_Chr3g0141941 38.462 260 150 5 247 500 159 414 1.44e-44 164
Msa0053110 MtrunA17_Chr1g0155681 37.548 261 144 5 252 500 172 425 7.96e-44 164
Msa0053110 MtrunA17_Chr7g0267481 43.005 193 96 4 318 500 239 427 5.04e-43 162
Msa0053110 MtrunA17_Chr8g0373801 38.739 222 120 5 306 517 447 662 1.00e-41 160
Msa0053110 MtrunA17_Chr1g0177751 35.915 284 152 5 251 517 162 432 2.98e-41 157
Msa0053110 MtrunA17_Chr3g0141931 36.842 266 146 7 247 500 162 417 6.92e-41 153
Msa0053110 MtrunA17_Chr5g0403251 38.739 222 117 6 306 518 394 605 2.98e-40 155
Msa0053110 MtrunA17_Chr8g0387321 41.899 179 95 4 325 494 254 432 5.76e-39 150
Msa0053110 MtrunA17_Chr4g0008591 31.541 279 167 7 247 522 193 450 4.47e-37 144
Msa0053110 MtrunA17_Chr7g0240371 37.624 202 117 5 329 525 200 397 1.75e-36 142
Msa0053110 MtrunA17_Chr4g0028701 29.755 326 185 8 247 528 242 567 3.46e-35 140
Msa0053110 MtrunA17_Chr2g0327021 36.923 195 105 3 322 498 312 506 1.02e-33 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053110 AT4G32980.1 58.228 316 110 6 191 505 152 446 3.09e-110 337
Msa0053110 AT4G32980.2 58.228 316 110 6 191 505 152 446 3.09e-110 337
Msa0053110 AT2G16400.1 36.918 279 149 7 247 517 111 370 2.24e-43 161
Msa0053110 AT2G27220.1 41.622 185 82 5 324 500 131 297 5.18e-42 156
Msa0053110 AT2G27220.3 41.622 185 82 5 324 500 131 297 5.18e-42 156
Msa0053110 AT1G19700.1 34.799 273 145 7 247 500 162 420 7.01e-42 158
Msa0053110 AT1G19700.3 34.799 273 145 7 247 500 162 420 7.01e-42 158
Msa0053110 AT1G19700.5 34.799 273 145 7 247 500 162 420 7.01e-42 158
Msa0053110 AT1G19700.4 34.799 273 145 7 247 500 162 420 7.01e-42 158
Msa0053110 AT1G19700.2 34.799 273 145 7 247 500 162 420 7.01e-42 158
Msa0053110 AT4G34610.2 32.873 362 199 12 149 500 56 383 1.21e-41 157
Msa0053110 AT4G34610.4 32.873 362 199 12 149 500 56 383 1.21e-41 157
Msa0053110 AT4G34610.3 32.873 362 199 12 149 500 56 383 1.21e-41 157
Msa0053110 AT4G34610.1 32.873 362 199 12 149 500 56 383 1.21e-41 157
Msa0053110 AT1G75410.1 35.632 261 152 6 247 500 164 415 2.47e-41 156
Msa0053110 AT1G75410.2 35.632 261 152 6 247 500 164 415 2.47e-41 156
Msa0053110 AT2G27220.2 42.941 170 71 5 339 500 164 315 1.77e-38 147
Msa0053110 AT1G75430.1 40.314 191 99 3 323 500 83 271 4.94e-38 141
Msa0053110 AT4G36870.2 36.538 208 114 4 305 500 366 567 2.56e-37 147
Msa0053110 AT4G36870.1 36.538 208 114 4 305 500 366 567 2.56e-37 147
Msa0053110 AT2G23760.2 37.255 204 110 4 307 498 294 491 4.80e-36 142
Msa0053110 AT2G23760.1 37.255 204 110 4 307 498 294 491 4.80e-36 142
Msa0053110 AT2G23760.3 37.255 204 110 4 307 498 294 491 4.80e-36 142
Msa0053110 AT5G41410.1 39.899 198 105 5 319 503 267 463 2.36e-35 140
Msa0053110 AT2G27990.1 40.462 173 99 3 328 499 323 492 1.68e-34 137
Msa0053110 AT2G35940.3 29.064 406 239 10 126 492 51 446 6.63e-34 136
Msa0053110 AT2G35940.1 29.064 406 239 10 126 492 51 446 6.63e-34 136
Msa0053110 AT2G35940.2 29.064 406 239 10 126 492 51 446 6.63e-34 136
Msa0053110 AT5G02030.1 36.813 182 100 3 332 498 234 415 1.14e-29 123
Msa0053110 AT2G23760.4 29.688 256 110 5 307 498 294 543 1.11e-27 117
Msa0053110 AT1G75410.3 30.962 239 149 6 247 478 164 393 9.53e-26 109
Msa0053110 AT4G36870.4 31.551 187 110 4 305 479 366 546 9.97e-23 102
Msa0053110 AT4G36870.3 30.811 185 110 4 305 477 366 544 1.08e-21 99.0
Msa0053110 AT1G75430.2 31.081 148 87 3 323 457 83 228 1.52e-13 71.6
Msa0053110 AT2G27990.2 32.824 131 84 3 328 457 323 450 1.08e-12 70.5

Find 97 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATCTTGCTATTAATTT+TGG 0.094031 1_2:-7514958 Msa0053110:three_prime_UTR
TTCCATACATATTCAATAAT+TGG 0.188620 1_2:-7517379 Msa0053110:CDS
AATGGAATTCCAATACTTTC+TGG 0.223215 1_2:-7517584 Msa0053110:CDS
ATCTTTCTGGCAAGCCCCTT+TGG 0.227378 1_2:+7515831 None:intergenic
AACCAAAACAACATCATAAA+TGG 0.230798 1_2:-7517602 Msa0053110:CDS
ATGGAACTTTCTATGAGTTT+AGG 0.232674 1_2:-7517026 Msa0053110:CDS
TCTTTCTGGCAAGCCCCTTT+GGG 0.243439 1_2:+7515832 None:intergenic
AAATGCTTCTCTGCATCTTT+AGG 0.274049 1_2:+7515524 None:intergenic
TCTTGATGAGATAAACTATT+CGG 0.288114 1_2:-7516901 Msa0053110:CDS
TTCCATTTATGATGTTGTTT+TGG 0.288436 1_2:+7517600 None:intergenic
TGGAACTTTCTATGAGTTTA+GGG 0.292728 1_2:-7517025 Msa0053110:CDS
AACGGTTTCTCGACTATATA+AGG 0.297571 1_2:-7516011 Msa0053110:CDS
CTGTTTCCGTTCTACGTGAT+TGG 0.305984 1_2:-7515808 Msa0053110:CDS
AACCCCTTGTGTGCAACTTT+TGG 0.320504 1_2:-7517338 Msa0053110:CDS
TATTCGGGTTCTGGTGTTAG+AGG 0.338538 1_2:-7516885 Msa0053110:CDS
GAGATAAACTATTCGGGTTC+TGG 0.339602 1_2:-7516894 Msa0053110:CDS
ACAAGCCTCATGTAGTAGTA+TGG 0.375487 1_2:-7517045 Msa0053110:CDS
GAATGGAACAAGATCGGGTT+TGG 0.377735 1_2:-7517069 Msa0053110:CDS
TTTGATGATTGCCATCCATT+TGG 0.383458 1_2:+7517221 None:intergenic
AAGATACCTTGCTGTAATTC+AGG 0.388861 1_2:-7516961 Msa0053110:CDS
GGTTTATAAATGCGCGTGTT+CGG 0.404462 1_2:-7515135 Msa0053110:CDS
AAGTTCATTGCTACAATTTG+AGG 0.409458 1_2:+7517166 None:intergenic
CTTGATGAGATAAACTATTC+GGG 0.413238 1_2:-7516900 Msa0053110:CDS
AGAACGGAAACAGATCTTTC+TGG 0.415143 1_2:+7515818 None:intergenic
AGCTCTGTTTGATTTATGTA+AGG 0.420611 1_2:-7517913 Msa0053110:five_prime_UTR
TAAATGCGCGTGTTCGGCTA+TGG 0.423300 1_2:-7515129 Msa0053110:CDS
TTCATTCATTCAAAAGCAAT+GGG 0.425095 1_2:-7515894 Msa0053110:CDS
TTCCTATGCTTATTAAGATA+AGG 0.425691 1_2:-7517890 Msa0053110:intron
TATCTTGATCCTAATATTGC+CGG 0.425897 1_2:+7516978 None:intergenic
TGCCAATTATTGAATATGTA+TGG 0.427184 1_2:+7517377 None:intergenic
GCATACATTTCCTCAATCAA+TGG 0.431572 1_2:+7515103 None:intergenic
AAATGTTTAATATGAATTGA+AGG 0.435021 1_2:-7515000 Msa0053110:exon
CTTGCAACATCACCAACTTC+AGG 0.442716 1_2:-7517134 Msa0053110:CDS
TAGCAAACATATTCTTTCCA+TGG 0.443732 1_2:-7515972 Msa0053110:CDS
GGGCTCTTCAACAGTTGAAA+AGG 0.453231 1_2:-7515874 Msa0053110:CDS
CAGTCAATATAGTCAATGTT+TGG 0.454449 1_2:-7516113 Msa0053110:CDS
TTATTAACAATGAGATTTGA+GGG 0.454533 1_2:+7517458 None:intergenic
TGCACACTTTGCTGTCAAAA+CGG 0.454758 1_2:-7516029 Msa0053110:CDS
TGAAAAGGAAAGATCAGTTA+TGG 0.458634 1_2:-7515859 Msa0053110:CDS
GTTATTAACAATGAGATTTG+AGG 0.462088 1_2:+7517457 None:intergenic
CTTCATTCATTCAAAAGCAA+TGG 0.463764 1_2:-7515895 Msa0053110:CDS
TGTTCTCCACCAGAAAGTAT+TGG 0.466176 1_2:+7517575 None:intergenic
GCAAAGTGTGCATGTATTTG+TGG 0.466187 1_2:+7516040 None:intergenic
AGCATGAATGGAACAAGATC+GGG 0.483225 1_2:-7517074 Msa0053110:CDS
AAAGCTCAAGAGAGTAATGT+TGG 0.486264 1_2:-7517284 Msa0053110:CDS
ATTTATTCCTATCCTTCGCT+TGG 0.489525 1_2:+7516830 None:intergenic
TTCATGGTCAGAAGAGGATA+AGG 0.491594 1_2:-7515933 Msa0053110:CDS
AGCAAACATATTCTTTCCAT+GGG 0.494717 1_2:-7515971 Msa0053110:CDS
ACTGTTAAAATTTGATCCCA+TGG 0.497477 1_2:+7515955 None:intergenic
AATCAAACAGAGCTACCATA+TGG 0.497678 1_2:+7517922 None:intergenic
GACTTAACTCATAGCATGAA+TGG 0.499550 1_2:-7517086 Msa0053110:CDS
ATGAGAGCAGTGAAAGAAGC+AGG 0.499804 1_2:-7515039 Msa0053110:CDS
GGTTCTGGTGTTAGAGGCCG+AGG 0.503924 1_2:-7516879 Msa0053110:CDS
TGGTTGTGTAGGTATCAAAC+TGG 0.504145 1_2:-7515156 Msa0053110:intron
AAGTGGGTTGACTAGAAGTC+AGG 0.504398 1_2:-7515489 Msa0053110:intron
AACAAATGAATTATCAGCTA+TGG 0.505083 1_2:+7517514 None:intergenic
TCTTGAAGACCAATTCTAGC+AGG 0.505334 1_2:+7517419 None:intergenic
AGAAAAGCTTGTCGAAATGA+AGG 0.508701 1_2:-7515067 Msa0053110:CDS
ATCAGTTATGGAGGCCCCAA+AGG 0.509828 1_2:-7515847 Msa0053110:CDS
CTTTCTGGCAAGCCCCTTTG+GGG 0.514861 1_2:+7515833 None:intergenic
TCAGTTATGGAGGCCCCAAA+GGG 0.515348 1_2:-7515846 Msa0053110:CDS
TCAGCATAAGCTTCTGACAT+AGG 0.527852 1_2:+7516795 None:intergenic
TCATGTCATATTCGCCGATA+GGG 0.529853 1_2:-7517253 Msa0053110:CDS
ATAGGGAACATCGATCCAAA+TGG 0.530007 1_2:-7517236 Msa0053110:CDS
TAGCATGAATGGAACAAGAT+CGG 0.530199 1_2:-7517075 Msa0053110:CDS
ACAAAGTTGATTTATTTCCT+CGG 0.530630 1_2:+7516862 None:intergenic
GGTCAATGCTCAGAGATTAG+TGG 0.536668 1_2:-7517113 Msa0053110:CDS
ATGCTGATTCTTCATTGCAA+AGG 0.542693 1_2:-7516779 Msa0053110:CDS
GCTATGGAAACCATTGATTG+AGG 0.555071 1_2:-7515113 Msa0053110:CDS
ATCACCAAAAGTTGCACACA+AGG 0.561105 1_2:+7517334 None:intergenic
TTCTAGGTTCTCATAGGACA+AGG 0.562928 1_2:-7518020 Msa0053110:intron
ATATATGTAAAAGTTCCATA+TGG 0.565255 1_2:-7517937 Msa0053110:five_prime_UTR
TCTGAGCATTGACCTGAAGT+TGG 0.571861 1_2:+7517122 None:intergenic
CACCAAAAGTTGCACACAAG+GGG 0.572833 1_2:+7517336 None:intergenic
TAACAGTTCATGGTCAGAAG+AGG 0.576067 1_2:-7515939 Msa0053110:CDS
GGAATTCCAATACTTTCTGG+TGG 0.576914 1_2:-7517581 Msa0053110:CDS
ACTCTTGATGCTTCTACAGA+TGG 0.577737 1_2:-7516730 Msa0053110:intron
ACTGCTCAAATGAACATGGC+TGG 0.584941 1_2:-7517704 Msa0053110:CDS
AACACAACCAAGCGAAGGAT+AGG 0.588145 1_2:-7516837 Msa0053110:CDS
TTGTTACATCACAACATGGA+AGG 0.589701 1_2:-7517496 Msa0053110:CDS
AATGAATAGCAATGAATGAG+TGG 0.594918 1_2:+7517635 None:intergenic
AAACATCCAATCACGTAGAA+CGG 0.600137 1_2:+7515802 None:intergenic
TTCATGTCATATTCGCCGAT+AGG 0.602007 1_2:-7517254 Msa0053110:CDS
ACAACATGGAAGGACTATTG+TGG 0.614360 1_2:-7517486 Msa0053110:CDS
TTTGGATCGATGTTCCCTAT+CGG 0.616890 1_2:+7517239 None:intergenic
TAGATAATACTTACGGATGG+AGG 0.617974 1_2:+7515771 None:intergenic
TATATAAGGACTTGAGAGAG+AGG 0.620065 1_2:-7515997 Msa0053110:CDS
AAGTTCCATACTACTACATG+AGG 0.620943 1_2:+7517040 None:intergenic
GGAACATCGATCCAAATGGA+TGG 0.633164 1_2:-7517232 Msa0053110:CDS
AACCTTATCTTAATAAGCAT+AGG 0.641134 1_2:+7517888 None:intergenic
TCACCAAAAGTTGCACACAA+GGG 0.650888 1_2:+7517335 None:intergenic
TCATTTGTTACATCACAACA+TGG 0.664816 1_2:-7517500 Msa0053110:CDS
AAAGGAAAGATCAGTTATGG+AGG 0.667219 1_2:-7515856 Msa0053110:CDS
TGTCGAACACAACCAAGCGA+AGG 0.672572 1_2:-7516842 Msa0053110:CDS
GTACACTGCTCAAATGAACA+TGG 0.673477 1_2:-7517708 Msa0053110:CDS
GTATTTCCTGAATTACAGCA+AGG 0.683112 1_2:+7516955 None:intergenic
CAGTTATGGAGGCCCCAAAG+GGG 0.731077 1_2:-7515845 Msa0053110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTAAAAATGTGCTTT+TGG - chr1_2:7515086-7515105 Msa0053110:CDS 15.0%
!!! TTTTCTAATTGTTTTCTAAA+TGG - chr1_2:7515577-7515596 Msa0053110:intron 15.0%
!! TGAATTTAATGTAATCTAAA+TGG + chr1_2:7516625-7516644 None:intergenic 15.0%
!!! TAACCAAAGTTTTAATATAA+AGG - chr1_2:7517582-7517601 Msa0053110:CDS 15.0%
!! GATCTTATTATTATAGATAA+AGG + chr1_2:7517725-7517744 None:intergenic 15.0%
!!! TAATAACTTTTATACGATAA+GGG + chr1_2:7518100-7518119 None:intergenic 15.0%
!!! TTAATAACTTTTATACGATA+AGG + chr1_2:7518101-7518120 None:intergenic 15.0%
!! AAATGTTTAATATGAATTGA+AGG - chr1_2:7518318-7518337 Msa0053110:intron 15.0%
!!! TAATATCTTGCTATTAATTT+TGG - chr1_2:7518360-7518379 Msa0053110:intron 15.0%
!!! TGAGGTGAATTTTTTTTATA+TGG - chr1_2:7514973-7514992 Msa0053110:three_prime_UTR 20.0%
!! ACTATACAATAAATCTTGAT+GGG - chr1_2:7515056-7515075 Msa0053110:CDS 20.0%
!!! GATTAGAGTATCATTAAATT+TGG + chr1_2:7515238-7515257 None:intergenic 20.0%
!! ATATATGTAAAAGTTCCATA+TGG - chr1_2:7515381-7515400 Msa0053110:intron 20.0%
!!! ACAAGAACAATTTTAAGATA+AGG + chr1_2:7515497-7515516 None:intergenic 20.0%
!! AGAAAATAGACTTAGAAAAA+TGG + chr1_2:7515541-7515560 None:intergenic 20.0%
!! TTATTAACAATGAGATTTGA+GGG + chr1_2:7515863-7515882 None:intergenic 20.0%
!! TTCCATACATATTCAATAAT+TGG - chr1_2:7515939-7515958 Msa0053110:CDS 20.0%
!!! CATGTAAATTGATTTATGTT+TGG + chr1_2:7516837-7516856 None:intergenic 20.0%
!!! ACTTTTCCAAGTAAAATTTA+TGG - chr1_2:7516961-7516980 Msa0053110:CDS 20.0%
!! TCGATTATAGATAATACTTA+CGG + chr1_2:7517557-7517576 None:intergenic 20.0%
!! AGACCTTTATATTAAAACTT+TGG + chr1_2:7517588-7517607 None:intergenic 20.0%
!! ATTTACTTGCAATAAAAAGT+GGG - chr1_2:7517813-7517832 Msa0053110:intron 20.0%
!!! TTAAAACTGATTTTGGTATT+TGG - chr1_2:7517941-7517960 Msa0053110:five_prime_UTR 20.0%
!! TTTCAACTGATAAATAATCT+TGG + chr1_2:7517998-7518017 None:intergenic 20.0%
!! AGTGATTAGAGTTATATTTA+TGG - chr1_2:7518138-7518157 Msa0053110:intron 20.0%
!! ATTAGAGTTATATTTATGGT+TGG - chr1_2:7518142-7518161 Msa0053110:intron 20.0%
! CACTATACAATAAATCTTGA+TGG - chr1_2:7515055-7515074 Msa0053110:CDS 25.0%
! AAAGCAACATGAAAAACAAA+AGG + chr1_2:7515272-7515291 None:intergenic 25.0%
! AAGAAGTTGTCAAAAATGTT+TGG - chr1_2:7515338-7515357 Msa0053110:intron 25.0%
! TTCCTATGCTTATTAAGATA+AGG - chr1_2:7515428-7515447 Msa0053110:intron 25.0%
! AACCTTATCTTAATAAGCAT+AGG + chr1_2:7515433-7515452 None:intergenic 25.0%
! TATGCTTATTAAGATAAGGT+TGG - chr1_2:7515432-7515451 Msa0053110:intron 25.0%
! AACCAAAACAACATCATAAA+TGG - chr1_2:7515716-7515735 Msa0053110:intron 25.0%
!!! TTCCATTTATGATGTTGTTT+TGG + chr1_2:7515721-7515740 None:intergenic 25.0%
! AACAAATGAATTATCAGCTA+TGG + chr1_2:7515807-7515826 None:intergenic 25.0%
! GTTATTAACAATGAGATTTG+AGG + chr1_2:7515864-7515883 None:intergenic 25.0%
! TGCCAATTATTGAATATGTA+TGG + chr1_2:7515944-7515963 None:intergenic 25.0%
! TCTTGATGAGATAAACTATT+CGG - chr1_2:7516417-7516436 Msa0053110:intron 25.0%
!! ACAAAGTTGATTTATTTCCT+CGG + chr1_2:7516459-7516478 None:intergenic 25.0%
! TTGATTTCTGATGTTTAGAA+TGG - chr1_2:7516723-7516742 Msa0053110:intron 25.0%
!!! AGAATGGATTTTGACATTTT+TGG - chr1_2:7516739-7516758 Msa0053110:CDS 25.0%
! TTCCAAGTAAAATTTATGGA+TGG - chr1_2:7516965-7516984 Msa0053110:CDS 25.0%
!! AACCATCCATAAATTTTACT+TGG + chr1_2:7516970-7516989 None:intergenic 25.0%
!!! TAGTAGTCTTTATTTTACTC+AGG - chr1_2:7517178-7517197 Msa0053110:CDS 25.0%
!!! GATCAAATTTTAACAGTTCA+TGG - chr1_2:7517369-7517388 Msa0053110:CDS 25.0%
! TTCATTCATTCAAAAGCAAT+GGG - chr1_2:7517424-7517443 Msa0053110:CDS 25.0%
! TTATAGATAATACTTACGGA+TGG + chr1_2:7517553-7517572 None:intergenic 25.0%
! CATTTACTTGCAATAAAAAG+TGG - chr1_2:7517812-7517831 Msa0053110:intron 25.0%
!!! GTCACATACATATTTTGATT+TGG - chr1_2:7517861-7517880 Msa0053110:intron 25.0%
! ATTTATCAGTTGAAAACATG+TGG - chr1_2:7518003-7518022 Msa0053110:five_prime_UTR 25.0%
!!! CAATGCTTTTGTTATTCTTG+AGG - chr1_2:7514955-7514974 Msa0053110:three_prime_UTR 30.0%
! TTTGAGCTTTTTGTGTGTAT+TGG - chr1_2:7515011-7515030 Msa0053110:CDS 30.0%
TATTGGAGTTGAGAAATGAA+TGG - chr1_2:7515028-7515047 Msa0053110:CDS 30.0%
TTGCTAATGTTCATGCATAT+TGG - chr1_2:7515135-7515154 Msa0053110:CDS 30.0%
! TGAATATCAAAAGCATGCAT+TGG + chr1_2:7515162-7515181 None:intergenic 30.0%
!!! ATGTTGCTTTGTTGTTTTCT+AGG - chr1_2:7515282-7515301 Msa0053110:intron 30.0%
! ATTTTTGACAACTTCTTTGC+AGG + chr1_2:7515335-7515354 None:intergenic 30.0%
! AGCTCTGTTTGATTTATGTA+AGG - chr1_2:7515405-7515424 Msa0053110:intron 30.0%
AATGAATAGCAATGAATGAG+TGG + chr1_2:7515686-7515705 None:intergenic 30.0%
!!! TGATGTTGTTTTGGTTGTTA+AGG + chr1_2:7515712-7515731 None:intergenic 30.0%
AATGGAATTCCAATACTTTC+TGG - chr1_2:7515734-7515753 Msa0053110:intron 30.0%
! TCATTTGTTACATCACAACA+TGG - chr1_2:7515818-7515837 Msa0053110:CDS 30.0%
AAGTTCATTGCTACAATTTG+AGG + chr1_2:7516155-7516174 None:intergenic 30.0%
ATGGAACTTTCTATGAGTTT+AGG - chr1_2:7516292-7516311 Msa0053110:intron 30.0%
TGGAACTTTCTATGAGTTTA+GGG - chr1_2:7516293-7516312 Msa0053110:intron 30.0%
TATCTTGATCCTAATATTGC+CGG + chr1_2:7516343-7516362 None:intergenic 30.0%
CTTGATGAGATAAACTATTC+GGG - chr1_2:7516418-7516437 Msa0053110:intron 30.0%
AAACATACACTAATTCGATC+AGG + chr1_2:7516675-7516694 None:intergenic 30.0%
! TCGAATTAGTGTATGTTTTC+TGG - chr1_2:7516677-7516696 Msa0053110:intron 30.0%
! AAGTGAACAATTTTGCATCT+AGG + chr1_2:7516932-7516951 None:intergenic 30.0%
GCAAATTGTATGATGTTGAA+TGG - chr1_2:7517028-7517047 Msa0053110:CDS 30.0%
!!! TAGTCTTTATTTTACTCAGG+TGG - chr1_2:7517181-7517200 Msa0053110:CDS 30.0%
CAGTCAATATAGTCAATGTT+TGG - chr1_2:7517205-7517224 Msa0053110:CDS 30.0%
TAGCAAACATATTCTTTCCA+TGG - chr1_2:7517346-7517365 Msa0053110:CDS 30.0%
AGCAAACATATTCTTTCCAT+GGG - chr1_2:7517347-7517366 Msa0053110:CDS 30.0%
ACTGTTAAAATTTGATCCCA+TGG + chr1_2:7517366-7517385 None:intergenic 30.0%
CTTCATTCATTCAAAAGCAA+TGG - chr1_2:7517423-7517442 Msa0053110:CDS 30.0%
TGAAAAGGAAAGATCAGTTA+TGG - chr1_2:7517459-7517478 Msa0053110:CDS 30.0%
! CCTGACTATTAATTTGGAAT+CGG + chr1_2:7517911-7517930 None:intergenic 30.0%
! GTCATTAATTTGAGATCGAA+TGG + chr1_2:7517976-7517995 None:intergenic 30.0%
CAAGGATTAAGTAATGTCTA+CGG + chr1_2:7518039-7518058 None:intergenic 30.0%
! GATAAGGGCTACATTTTTAA+TGG + chr1_2:7518085-7518104 None:intergenic 30.0%
! ATATTTATGGTTGGTTGTGT+AGG - chr1_2:7518151-7518170 Msa0053110:intron 30.0%
! AAACCAGAAGTATGCTGAAA+AGG + chr1_2:7515185-7515204 None:intergenic 35.0%
!! GTTGTTTTCTAGGTTCTCAT+AGG - chr1_2:7515292-7515311 Msa0053110:intron 35.0%
AATCAAACAGAGCTACCATA+TGG + chr1_2:7515399-7515418 None:intergenic 35.0%
TTGTTACATCACAACATGGA+AGG - chr1_2:7515822-7515841 Msa0053110:CDS 35.0%
! TTTTCAGTTCCTGCTAGAAT+TGG - chr1_2:7515890-7515909 Msa0053110:CDS 35.0%
AAAGCTCAAGAGAGTAATGT+TGG - chr1_2:7516034-7516053 Msa0053110:CDS 35.0%
! TTTGATGATTGCCATCCATT+TGG + chr1_2:7516100-7516119 None:intergenic 35.0%
GACTTAACTCATAGCATGAA+TGG - chr1_2:7516232-7516251 Msa0053110:intron 35.0%
TAGCATGAATGGAACAAGAT+CGG - chr1_2:7516243-7516262 Msa0053110:intron 35.0%
AAGTTCCATACTACTACATG+AGG + chr1_2:7516281-7516300 None:intergenic 35.0%
! TAAACATGTCAAGTTTTCGC+CGG - chr1_2:7516321-7516340 Msa0053110:intron 35.0%
! AAGATACCTTGCTGTAATTC+AGG - chr1_2:7516357-7516376 Msa0053110:intron 35.0%
GTATTTCCTGAATTACAGCA+AGG + chr1_2:7516366-7516385 None:intergenic 35.0%
ATTTATTCCTATCCTTCGCT+TGG + chr1_2:7516491-7516510 None:intergenic 35.0%
!! ATGCTGATTCTTCATTGCAA+AGG - chr1_2:7516539-7516558 Msa0053110:intron 35.0%
AATTCGATCAGGACTATGAA+CGG + chr1_2:7516664-7516683 None:intergenic 35.0%
! TCTGGTTTCATTCTTGAACA+TGG - chr1_2:7516695-7516714 Msa0053110:intron 35.0%
TTTACATGCAACACACTCTT+AGG - chr1_2:7516849-7516868 Msa0053110:CDS 35.0%
ACATTCCAAAGTTACACACA+AGG - chr1_2:7517090-7517109 Msa0053110:CDS 35.0%
TTGATCCTTGTGTGTAACTT+TGG + chr1_2:7517098-7517117 None:intergenic 35.0%
AAGTTACACACAAGGATCAA+AGG - chr1_2:7517098-7517117 Msa0053110:CDS 35.0%
AACGGTTTCTCGACTATATA+AGG - chr1_2:7517307-7517326 Msa0053110:CDS 35.0%
TATATAAGGACTTGAGAGAG+AGG - chr1_2:7517321-7517340 Msa0053110:CDS 35.0%
AAAGGAAAGATCAGTTATGG+AGG - chr1_2:7517462-7517481 Msa0053110:CDS 35.0%
AAACATCCAATCACGTAGAA+CGG + chr1_2:7517519-7517538 None:intergenic 35.0%
TAGATAATACTTACGGATGG+AGG + chr1_2:7517550-7517569 None:intergenic 35.0%
GATAAAAAACCCTGATACTG+TGG + chr1_2:7517627-7517646 None:intergenic 35.0%
AGATCATTGATGAATGCATG+TGG - chr1_2:7517740-7517759 Msa0053110:exon 35.0%
ACAATGATGTGATGCATTTC+AGG - chr1_2:7517768-7517787 Msa0053110:intron 35.0%
AAATGCTTCTCTGCATCTTT+AGG + chr1_2:7517797-7517816 None:intergenic 35.0%
CCGATTCCAAATTAATAGTC+AGG - chr1_2:7517908-7517927 Msa0053110:five_prime_UTR 35.0%
TCCAAATTAATAGTCAGGTC+AGG - chr1_2:7517913-7517932 Msa0053110:five_prime_UTR 35.0%
TCCTGACCTGACTATTAATT+TGG + chr1_2:7517917-7517936 None:intergenic 35.0%
ATTAATAGTCAGGTCAGGAT+CGG - chr1_2:7517918-7517937 Msa0053110:five_prime_UTR 35.0%
!! GGATCGGTTAAAACTGATTT+TGG - chr1_2:7517934-7517953 Msa0053110:five_prime_UTR 35.0%
! GTTGAAAACATGTGGTTTTC+CGG - chr1_2:7518011-7518030 Msa0053110:five_prime_UTR 35.0%
TTAAGTAATGTCTACGGATC+CGG + chr1_2:7518033-7518052 None:intergenic 35.0%
!!! TAATCCTTGCTTGTTTTGAG+AGG - chr1_2:7518050-7518069 Msa0053110:intron 35.0%
GCATACATTTCCTCAATCAA+TGG + chr1_2:7518218-7518237 None:intergenic 35.0%
AGAAAAGCTTGTCGAAATGA+AGG - chr1_2:7518251-7518270 Msa0053110:intron 35.0%
! TCACCTTTTCAGCATACTTC+TGG - chr1_2:7515179-7515198 Msa0053110:intron 40.0%
TTCTAGGTTCTCATAGGACA+AGG - chr1_2:7515298-7515317 Msa0053110:intron 40.0%
GTACACTGCTCAAATGAACA+TGG - chr1_2:7515610-7515629 Msa0053110:intron 40.0%
GGAATTCCAATACTTTCTGG+TGG - chr1_2:7515737-7515756 Msa0053110:intron 40.0%
! TGTTCTCCACCAGAAAGTAT+TGG + chr1_2:7515746-7515765 None:intergenic 40.0%
ACAACATGGAAGGACTATTG+TGG - chr1_2:7515832-7515851 Msa0053110:CDS 40.0%
TCTTGAAGACCAATTCTAGC+AGG + chr1_2:7515902-7515921 None:intergenic 40.0%
TCACCAAAAGTTGCACACAA+GGG + chr1_2:7515986-7516005 None:intergenic 40.0%
ATCACCAAAAGTTGCACACA+AGG + chr1_2:7515987-7516006 None:intergenic 40.0%
TTCATGTCATATTCGCCGAT+AGG - chr1_2:7516064-7516083 Msa0053110:CDS 40.0%
TCATGTCATATTCGCCGATA+GGG - chr1_2:7516065-7516084 Msa0053110:CDS 40.0%
TTTGGATCGATGTTCCCTAT+CGG + chr1_2:7516082-7516101 None:intergenic 40.0%
ATAGGGAACATCGATCCAAA+TGG - chr1_2:7516082-7516101 Msa0053110:CDS 40.0%
AGCATGAATGGAACAAGATC+GGG - chr1_2:7516244-7516263 Msa0053110:intron 40.0%
ACAAGCCTCATGTAGTAGTA+TGG - chr1_2:7516273-7516292 Msa0053110:intron 40.0%
! AAGTTTTCGCCGGCAATATT+AGG - chr1_2:7516331-7516350 Msa0053110:intron 40.0%
! GAGATAAACTATTCGGGTTC+TGG - chr1_2:7516424-7516443 Msa0053110:intron 40.0%
TCAGCATAAGCTTCTGACAT+AGG + chr1_2:7516526-7516545 None:intergenic 40.0%
ACTCTTGATGCTTCTACAGA+TGG - chr1_2:7516588-7516607 Msa0053110:intron 40.0%
GCAAAGTGTGCATGTATTTG+TGG + chr1_2:7517281-7517300 None:intergenic 40.0%
! TGCACACTTTGCTGTCAAAA+CGG - chr1_2:7517289-7517308 Msa0053110:CDS 40.0%
TAACAGTTCATGGTCAGAAG+AGG - chr1_2:7517379-7517398 Msa0053110:CDS 40.0%
TTCATGGTCAGAAGAGGATA+AGG - chr1_2:7517385-7517404 Msa0053110:CDS 40.0%
AGAACGGAAACAGATCTTTC+TGG + chr1_2:7517503-7517522 None:intergenic 40.0%
!!! GGGTTTTTTATCCCCAATTC+CGG - chr1_2:7517635-7517654 Msa0053110:CDS 40.0%
AGTTCCTCTCAAAACAAGCA+AGG + chr1_2:7518057-7518076 None:intergenic 40.0%
TGGTTGTGTAGGTATCAAAC+TGG - chr1_2:7518162-7518181 Msa0053110:intron 40.0%
GGTTTATAAATGCGCGTGTT+CGG - chr1_2:7518183-7518202 Msa0053110:intron 40.0%
! GCTATGGAAACCATTGATTG+AGG - chr1_2:7518205-7518224 Msa0053110:intron 40.0%
ACTGCTCAAATGAACATGGC+TGG - chr1_2:7515614-7515633 Msa0053110:intron 45.0%
! AACCCCTTGTGTGCAACTTT+TGG - chr1_2:7515980-7515999 Msa0053110:CDS 45.0%
CACCAAAAGTTGCACACAAG+GGG + chr1_2:7515985-7516004 None:intergenic 45.0%
GGAACATCGATCCAAATGGA+TGG - chr1_2:7516086-7516105 Msa0053110:CDS 45.0%
CTTGCAACATCACCAACTTC+AGG - chr1_2:7516184-7516203 Msa0053110:intron 45.0%
!! TCTGAGCATTGACCTGAAGT+TGG + chr1_2:7516199-7516218 None:intergenic 45.0%
GGTCAATGCTCAGAGATTAG+TGG - chr1_2:7516205-7516224 Msa0053110:intron 45.0%
GAATGGAACAAGATCGGGTT+TGG - chr1_2:7516249-7516268 Msa0053110:intron 45.0%
! TATTCGGGTTCTGGTGTTAG+AGG - chr1_2:7516433-7516452 Msa0053110:intron 45.0%
AACACAACCAAGCGAAGGAT+AGG - chr1_2:7516481-7516500 Msa0053110:intron 45.0%
GGGCTCTTCAACAGTTGAAA+AGG - chr1_2:7517444-7517463 Msa0053110:CDS 45.0%
CTGTTTCCGTTCTACGTGAT+TGG - chr1_2:7517510-7517529 Msa0053110:CDS 45.0%
!! AAGTGGGTTGACTAGAAGTC+AGG - chr1_2:7517829-7517848 Msa0053110:intron 45.0%
ATGAGAGCAGTGAAAGAAGC+AGG - chr1_2:7518279-7518298 Msa0053110:intron 45.0%
TGTCGAACACAACCAAGCGA+AGG - chr1_2:7516476-7516495 Msa0053110:intron 50.0%
ATCAGTTATGGAGGCCCCAA+AGG - chr1_2:7517471-7517490 Msa0053110:CDS 50.0%
TCAGTTATGGAGGCCCCAAA+GGG - chr1_2:7517472-7517491 Msa0053110:CDS 50.0%
! TCTTTCTGGCAAGCCCCTTT+GGG + chr1_2:7517489-7517508 None:intergenic 50.0%
! ATCTTTCTGGCAAGCCCCTT+TGG + chr1_2:7517490-7517509 None:intergenic 50.0%
CGATTGCAGCCACAGTATCA+GGG - chr1_2:7517615-7517634 Msa0053110:CDS 50.0%
TAAATGCGCGTGTTCGGCTA+TGG - chr1_2:7518189-7518208 Msa0053110:intron 50.0%
CAGTTATGGAGGCCCCAAAG+GGG - chr1_2:7517473-7517492 Msa0053110:CDS 55.0%
! CTTTCTGGCAAGCCCCTTTG+GGG + chr1_2:7517488-7517507 None:intergenic 55.0%
GCGATTGCAGCCACAGTATC+AGG - chr1_2:7517614-7517633 Msa0053110:CDS 55.0%
AGCTGATGCAGCCGGAATTG+GGG + chr1_2:7517649-7517668 None:intergenic 55.0%
CAGCTGATGCAGCCGGAATT+GGG + chr1_2:7517650-7517669 None:intergenic 55.0%
CGAAATGCAGCTGATGCAGC+CGG + chr1_2:7517657-7517676 None:intergenic 55.0%
! GGTTCTGGTGTTAGAGGCCG+AGG - chr1_2:7516439-7516458 Msa0053110:intron 60.0%
GCAGCTGATGCAGCCGGAAT+TGG + chr1_2:7517651-7517670 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 7514890 7518450 7514890 ID=Msa0053110;Name=Msa0053110
chr1_2 mRNA 7514890 7518450 7514890 ID=Msa0053110-mRNA-1;Parent=Msa0053110;Name=Msa0053110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=254|1|1|1|0.8|0.66|6|113|531
chr1_2 exon 7514890 7515167 7514890 ID=Msa0053110-mRNA-1:exon:2587;Parent=Msa0053110-mRNA-1
chr1_2 exon 7515490 7515550 7515490 ID=Msa0053110-mRNA-1:exon:2586;Parent=Msa0053110-mRNA-1
chr1_2 exon 7515785 7516140 7515785 ID=Msa0053110-mRNA-1:exon:2585;Parent=Msa0053110-mRNA-1
chr1_2 exon 7516731 7517765 7516731 ID=Msa0053110-mRNA-1:exon:2584;Parent=Msa0053110-mRNA-1
chr1_2 exon 7517891 7518036 7517891 ID=Msa0053110-mRNA-1:exon:2583;Parent=Msa0053110-mRNA-1
chr1_2 exon 7518364 7518450 7518364 ID=Msa0053110-mRNA-1:exon:2582;Parent=Msa0053110-mRNA-1
chr1_2 five_prime_UTR 7518364 7518450 7518364 ID=Msa0053110-mRNA-1:five_prime_utr;Parent=Msa0053110-mRNA-1
chr1_2 five_prime_UTR 7517891 7518036 7517891 ID=Msa0053110-mRNA-1:five_prime_utr;Parent=Msa0053110-mRNA-1
chr1_2 five_prime_UTR 7517745 7517765 7517745 ID=Msa0053110-mRNA-1:five_prime_utr;Parent=Msa0053110-mRNA-1
chr1_2 CDS 7516731 7517744 7516731 ID=Msa0053110-mRNA-1:cds;Parent=Msa0053110-mRNA-1
chr1_2 CDS 7515785 7516140 7515785 ID=Msa0053110-mRNA-1:cds;Parent=Msa0053110-mRNA-1
chr1_2 CDS 7515490 7515550 7515490 ID=Msa0053110-mRNA-1:cds;Parent=Msa0053110-mRNA-1
chr1_2 CDS 7515003 7515167 7515003 ID=Msa0053110-mRNA-1:cds;Parent=Msa0053110-mRNA-1
chr1_2 three_prime_UTR 7514890 7515002 7514890 ID=Msa0053110-mRNA-1:three_prime_utr;Parent=Msa0053110-mRNA-1
Gene Sequence

>Msa0053110

ATGGAGAATGATGTGTACACTGCTCAAATGAACATGGCTGGTCAAGTTTCAAATATAGAAGATATCACACAACATCTAACACAAAAGCCACTCATTCATTGCTATTCATTTGACCTTAACAACCAAAACAACATCATAAATGGAATTCCAATACTTTCTGGTGGAGAACAAGATCAACATGTTGATGCTAGTTTCATGAATCAAGTTACCATAGCTGATAATTCATTTGTTACATCACAACATGGAAGGACTATTGTGGAAAATCCCTCAAATCTCATTGTTAATAACAATGACTTTTCAGTTCCTGCTAGAATTGGTCTTCAAGAAAATTTAGAAGCAATAGTTCCATACATATTCAATAATTGGCATGATACTTCAAACTCAAACCCCTTGTGTGCAACTTTTGGTGATAATAATAGCTATGTTAACAAGTTTTTGAAAGCTCAAGAGAGTAATGTTGGAACTGAATTCATGTCATATTCGCCGATAGGGAACATCGATCCAAATGGATGGCAATCATCAAATGTTGCTAACTTAACAAATCTTGCTTATAGTTCCTCAAATTGTAGCAATGAACTTTCACTAAGTCTTGCAACATCACCAACTTCAGGTCAATGCTCAGAGATTAGTGGTTCTGACTTAACTCATAGCATGAATGGAACAAGATCGGGTTTGGAACAAGCCTCATGTAGTAGTATGGAACTTTCTATGAGTTTAGGGAATGATAAACATGTCAAGTTTTCGCCGGCAATATTAGGATCAAGATACCTTGCTGTAATTCAGGAAATACTTGTTCAAATTGCAACATATTCATTTGAAAATCTTGATGAGATAAACTATTCGGGTTCTGGTGTTAGAGGCCGAGGAAATAAATCAACTTTGTCGAACACAACCAAGCGAAGGATAGGAATAAATCGCGATGAGAGTCCTATGTCAGAAGCTTATGCTGATTCTTCATTGCAAAGGCATGCTGTTGAATCAAAGCAATCTCAACTCTTGATGCTTCTACAGATGGTGGACAGTCAATATAGTCAATGTTTGGATGAGATTCACACTGTCGTATCAGCATTTCATGCTGCTACTGAGCTCGATCCACAAATACATGCACACTTTGCTGTCAAAACGGTTTCTCGACTATATAAGGACTTGAGAGAGAGGATTAGCAAACATATTCTTTCCATGGGATCAAATTTTAACAGTTCATGGTCAGAAGAGGATAAGGAATTGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTTCAACAGTTGAAAAGGAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTTTCCGTTCTACGTGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAATAAAAAGTGGGTTGACTAGAAGTCAGGTATCAAACTGGTTTATAAATGCGCGTGTTCGGCTATGGAAACCATTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTCGAAATGAAGGAGAAAATGAGAGCAGTGAAAGAAGCAGGATAAGCATTAACAATCAAATGTTTAATATGAATTGA

Protein sequence

>Msa0053110

MENDVYTAQMNMAGQVSNIEDITQHLTQKPLIHCYSFDLNNQNNIINGIPILSGGEQDQHVDASFMNQVTIADNSFVTSQHGRTIVENPSNLIVNNNDFSVPARIGLQENLEAIVPYIFNNWHDTSNSNPLCATFGDNNSYVNKFLKAQESNVGTEFMSYSPIGNIDPNGWQSSNVANLTNLAYSSSNCSNELSLSLATSPTSGQCSEISGSDLTHSMNGTRSGLEQASCSSMELSMSLGNDKHVKFSPAILGSRYLAVIQEILVQIATYSFENLDEINYSGSGVRGRGNKSTLSNTTKRRIGINRDESPMSEAYADSSLQRHAVESKQSQLLMLLQMVDSQYSQCLDEIHTVVSAFHAATELDPQIHAHFAVKTVSRLYKDLRERISKHILSMGSNFNSSWSEEDKELSVETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQMFNMN*