AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692910 MtrunA17_Chr4g0043161 88.520 331 7 1 1 300 1 331 0.0 590
Msa0692910 MtrunA17_Chr5g0419131 73.118 279 44 1 53 300 9 287 6.30e-152 427
Msa0692910 MtrunA17_Chr8g0372991 38.793 116 68 3 68 183 94 206 1.05e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692910 AT1G13820.1 66.559 311 69 2 12 291 25 331 1.01e-149 423
Msa0692910 AT5G39220.1 57.051 312 100 3 8 285 13 324 1.65e-130 374
Msa0692910 AT5G39220.2 55.128 312 98 4 8 285 13 316 8.58e-123 354
Msa0692910 AT4G36530.2 36.111 108 67 2 68 175 94 199 6.44e-15 74.7
Msa0692910 AT4G36530.1 36.111 108 67 2 68 175 37 142 7.04e-15 74.3

Find 94 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAAATCAATTAAAATTA+TGG 0.154025 4_4:+61655399 None:intergenic
AGCAGAAAACACTCATAATT+TGG 0.205221 4_4:-61655991 Msa0692910:CDS
GGTTGGGGTTTCTCTGATTT+AGG 0.215057 4_4:-61658913 Msa0692910:intron
TTCAGCAACGACCTTGAATA+TGG 0.221184 4_4:+61660426 None:intergenic
TTAGTTCCCTTCACTGAAAA+TGG 0.239430 4_4:-61660473 Msa0692910:exon
TTGATAGCACATACAGCTTC+TGG 0.256899 4_4:+61658377 None:intergenic
GGTGACCACAATCGGGTATT+TGG 0.260697 4_4:+61655783 None:intergenic
TGAATGTCCATTCAAGTATA+TGG 0.269679 4_4:+61655425 None:intergenic
GGCCATTGACATTCTTGGTT+GGG 0.269914 4_4:-61658929 Msa0692910:CDS
GCAGAAAACACTCATAATTT+GGG 0.293612 4_4:-61655990 Msa0692910:CDS
ACCTGTCAAAACCATGTAAA+AGG 0.301670 4_4:+61659098 None:intergenic
TTGATTCTGTTGACGTCTTT+AGG 0.328912 4_4:+61660373 None:intergenic
CCTAGAGCGGCAGCTTATGC+TGG 0.339470 4_4:-61658183 Msa0692910:CDS
ACATGGGCCATTGACATTCT+TGG 0.350651 4_4:-61658934 Msa0692910:CDS
AAACCATGTAAAAGGACAAT+TGG 0.389663 4_4:+61659106 None:intergenic
AAGGTTTAACTTACGGAAAC+GGG 0.393487 4_4:+61660307 None:intergenic
TGTGCCATTGCCCATATTCA+AGG 0.398371 4_4:-61660437 Msa0692910:CDS
TTTACTGTCTTTGTATCCTT+CGG 0.403960 4_4:+61655707 None:intergenic
TATAAATCCATATACTTGAA+TGG 0.409935 4_4:-61655432 Msa0692910:three_prime_UTR
TGTTCAGCTCATGCTTAGAA+TGG 0.410367 4_4:-61658996 Msa0692910:intron
TTCTGTTGTGAAACTCATAA+AGG 0.412198 4_4:-61655738 Msa0692910:CDS
ATGAGGAAGGTGACCACAAT+CGG 0.412670 4_4:+61655775 None:intergenic
GCCATTGACATTCTTGGTTG+GGG 0.416519 4_4:-61658928 Msa0692910:CDS
ATGAGTTTCACAACAGAATC+CGG 0.424950 4_4:+61655743 None:intergenic
CAGAGAAATGACAGAATGTT+TGG 0.437973 4_4:-61655635 Msa0692910:three_prime_UTR
GGGCCATTGACATTCTTGGT+TGG 0.442632 4_4:-61658930 Msa0692910:CDS
TTCTCTGTCAGAATGGCAAA+AGG 0.444450 4_4:+61655651 None:intergenic
AAAGGTTTAACTTACGGAAA+CGG 0.449434 4_4:+61660306 None:intergenic
TATCAATTCAGTGGGGCTGC+TGG 0.457316 4_4:-61655567 Msa0692910:three_prime_UTR
ATTTGGCGTATAATTGCATC+AGG 0.462626 4_4:+61655800 None:intergenic
GCTTGCATTGTTTATTGCCA+TGG 0.468319 4_4:-61656244 Msa0692910:CDS
CTGTCATTTCTCTGTCAGAA+TGG 0.470108 4_4:+61655644 None:intergenic
ATATTGGTTGGTCCAAGCCT+TGG 0.474251 4_4:-61658434 Msa0692910:CDS
CTAGAGCGGCAGCTTATGCT+GGG 0.475042 4_4:-61658182 Msa0692910:CDS
CCGCTCTAGGTAAAGTTGCT+AGG 0.483024 4_4:+61658196 None:intergenic
TTCAGTGAAGGGAACTAAGC+TGG 0.484861 4_4:+61660478 None:intergenic
TTCACACAACTACTCATGAT+AGG 0.489264 4_4:+61659154 None:intergenic
TTGAATGGTTATCAATTCAG+TGG 0.491660 4_4:-61655576 Msa0692910:three_prime_UTR
GTTGACGTCTTTAGGAAGAA+AGG 0.491857 4_4:+61660381 None:intergenic
TCAGCAACGACCTTGAATAT+GGG 0.493870 4_4:+61660427 None:intergenic
AGGAAGCTGGTCTCGAGACA+TGG 0.494222 4_4:-61658951 Msa0692910:CDS
CCTTCCTCATGTTGAAAGAC+CGG 0.504688 4_4:-61655762 Msa0692910:CDS
CCAGCATAAGCTGCCGCTCT+AGG 0.515122 4_4:+61658183 None:intergenic
TATCCATTGCTTGAGGAAGC+TGG 0.515669 4_4:-61658964 Msa0692910:CDS
CTAGTGGAATCATTGAGTTA+TGG 0.517618 4_4:-61655541 Msa0692910:three_prime_UTR
GCATTGTTTATTGCCATGGT+GGG 0.519692 4_4:-61656240 Msa0692910:CDS
GTGGGGCTGCTGGTCACTAG+TGG 0.520636 4_4:-61655557 Msa0692910:three_prime_UTR
ACCCCAACCAAGAATGTCAA+TGG 0.531301 4_4:+61658927 None:intergenic
AGTAGTGATGGAGCATTGAA+TGG 0.532891 4_4:-61655591 Msa0692910:three_prime_UTR
CATAAAGGAATTTGTTCCGA+AGG 0.534304 4_4:-61655723 Msa0692910:CDS
TGAATGGTTATCAATTCAGT+GGG 0.542993 4_4:-61655575 Msa0692910:three_prime_UTR
ATTCAATGCTCCATCACTAC+TGG 0.545151 4_4:+61655593 None:intergenic
TCGCTCGAACTCTCGCTACA+CGG 0.547927 4_4:-61660342 Msa0692910:CDS
GATGCTAGTGTATATACAGA+AGG 0.551943 4_4:-61658228 Msa0692910:CDS
ACGTCTTTAGGAAGAAAGGA+AGG 0.559625 4_4:+61660385 None:intergenic
AGTGTATATACAGAAGGGAC+AGG 0.561208 4_4:-61658222 Msa0692910:CDS
GTAGCGAGAGTTCGAGCGAA+AGG 0.562295 4_4:+61660346 None:intergenic
TTGTTTATTGCCATGGTGGG+AGG 0.562994 4_4:-61656237 Msa0692910:CDS
GCAACAGCAGAACCAAGGCT+TGG 0.568008 4_4:+61658422 None:intergenic
GCGCTTTGATACCACATCGC+AGG 0.568479 4_4:+61658790 None:intergenic
TAGCGAGAGTTCGAGCGAAA+GGG 0.570769 4_4:+61660347 None:intergenic
TGAGGAAGGTGACCACAATC+GGG 0.572360 4_4:+61655776 None:intergenic
TCTCTGTCAGAATGGCAAAA+GGG 0.576525 4_4:+61655652 None:intergenic
GAAGCCACTGGTGCAGAACA+AGG 0.584513 4_4:-61659134 Msa0692910:CDS
GATTGAGTGGCAGTTATCTG+AGG 0.590898 4_4:-61660725 Msa0692910:intron
GAGTAGTTGTGTGAAGCCAC+TGG 0.590963 4_4:-61659146 Msa0692910:CDS
AGACCAGCTTCCTCAAGCAA+TGG 0.594235 4_4:+61658961 None:intergenic
CGTCTTTAGGAAGAAAGGAA+GGG 0.596147 4_4:+61660386 None:intergenic
CTTGGACCAACCAATATCAT+CGG 0.599779 4_4:+61658440 None:intergenic
TGCATTGTTTATTGCCATGG+TGG 0.602778 4_4:-61656241 Msa0692910:CDS
ACCGCAGCATCCTCCCACCA+TGG 0.611191 4_4:+61656227 None:intergenic
ATAATTGACTGCAAAGTCGA+TGG 0.611577 4_4:+61658400 None:intergenic
CAGAAAACACTCATAATTTG+GGG 0.615099 4_4:-61655989 Msa0692910:CDS
CCTAGCAACTTTACCTAGAG+CGG 0.619639 4_4:-61658196 Msa0692910:CDS
CCGGTCTTTCAACATGAGGA+AGG 0.621810 4_4:+61655762 None:intergenic
GGAAGCTGGTCTCGAGACAT+GGG 0.629492 4_4:-61658950 Msa0692910:CDS
ATTGAGTGGCAGTTATCTGA+GGG 0.630838 4_4:-61660724 Msa0692910:intron
CAAGCTTATTGCTGATTATG+CGG 0.631427 4_4:+61655957 None:intergenic
GAATCCGGTCTTTCAACATG+AGG 0.633980 4_4:+61655758 None:intergenic
ATACACATATCCATTGCTTG+AGG 0.640800 4_4:-61658971 Msa0692910:CDS
ATGCTAGTGTATATACAGAA+GGG 0.645627 4_4:-61658227 Msa0692910:CDS
GAAACTTCCTTCCTGCGATG+TGG 0.650174 4_4:-61658801 Msa0692910:CDS
ATACGCCAAATACCCGATTG+TGG 0.650226 4_4:-61655788 Msa0692910:CDS
ACGACCTTGAATATGGGCAA+TGG 0.651406 4_4:+61660433 None:intergenic
CGATGGCAACAGCAGAACCA+AGG 0.654068 4_4:+61658417 None:intergenic
TTTGATACCACATCGCAGGA+AGG 0.657996 4_4:+61658794 None:intergenic
AAGTGATGATGAAGATTGAG+TGG 0.658807 4_4:-61660738 Msa0692910:five_prime_UTR
GCCATGGTGGGAGGATGCTG+CGG 0.662564 4_4:-61656228 Msa0692910:CDS
AATCAGCAATAAGCTTGCAG+TGG 0.671390 4_4:-61655951 Msa0692910:intron
ATGGCAATAAACAATGCAAG+CGG 0.672060 4_4:+61656246 None:intergenic
GAAAACACTCATAATTTGGG+GGG 0.683422 4_4:-61655987 Msa0692910:CDS
AGAAAACACTCATAATTTGG+GGG 0.722458 4_4:-61655988 Msa0692910:CDS
TAGAGCGGCAGCTTATGCTG+GGG 0.733422 4_4:-61658181 Msa0692910:intron
GAATGGTTATCAATTCAGTG+GGG 0.775020 4_4:-61655574 Msa0692910:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATATAATTATATTCAA+AGG - chr4_4:61656032-61656051 Msa0692910:intron 10.0%
!! TTGTAATAATTGTTTATAAT+AGG - chr4_4:61656224-61656243 Msa0692910:CDS 10.0%
!!! TTGATATTTTTTTTTTAAAC+GGG + chr4_4:61656852-61656871 None:intergenic 10.0%
!!! ATTTATATACAACTTTAAAA+TGG + chr4_4:61657449-61657468 None:intergenic 10.0%
!!! AATTAAATTTCATTTTAGTA+GGG + chr4_4:61658666-61658685 None:intergenic 10.0%
!!! AAATTAAATTTCATTTTAGT+AGG + chr4_4:61658667-61658686 None:intergenic 10.0%
!! ATATATAATCTTATATAGAT+TGG - chr4_4:61659860-61659879 Msa0692910:intron 10.0%
!! ATTAAATTATCGATAAGAAA+AGG + chr4_4:61655844-61655863 None:intergenic 15.0%
!! TGAATATAATTATATATGTG+TGG + chr4_4:61656031-61656050 None:intergenic 15.0%
!! ATTGTTTATAATAGGATTAT+AGG - chr4_4:61656232-61656251 Msa0692910:CDS 15.0%
!! AAATACTAAATGAAATGAAA+AGG + chr4_4:61656284-61656303 None:intergenic 15.0%
!!! ATATTTGTTATGTTTCAAAA+TGG + chr4_4:61656571-61656590 None:intergenic 15.0%
!! TTGAAACATAACAAATATTA+TGG - chr4_4:61656573-61656592 Msa0692910:intron 15.0%
!!! TACTTTCTAATTTTTATCAT+TGG - chr4_4:61657482-61657501 Msa0692910:intron 15.0%
!!! TAAGAAATCAGATATTTTAT+AGG - chr4_4:61657528-61657547 Msa0692910:intron 15.0%
!! AAAAAAAATCTTCAAAAGTT+GGG + chr4_4:61657808-61657827 None:intergenic 15.0%
!! TAAAAAAAATCTTCAAAAGT+TGG + chr4_4:61657809-61657828 None:intergenic 15.0%
!!! ATTAAATTTCATTTTAGTAG+GGG + chr4_4:61658665-61658684 None:intergenic 15.0%
!!! ATAAATTCATTATGTACTTT+TGG + chr4_4:61658816-61658835 None:intergenic 15.0%
!! TAATTTAGTTAAGAATTCAA+GGG - chr4_4:61659257-61659276 Msa0692910:intron 15.0%
!!! ATCCAATTTTTTTAATTTAG+AGG - chr4_4:61659737-61659756 Msa0692910:intron 15.0%
!! ATCCTCTAAATTAAAAAAAT+TGG + chr4_4:61659742-61659761 None:intergenic 15.0%
!! TTATATCAAAATAATGATCT+TGG - chr4_4:61660228-61660247 Msa0692910:intron 15.0%
!!! ATAAGAAAAGGTTTAACTTA+CGG + chr4_4:61655832-61655851 None:intergenic 20.0%
!! TAATTATATTCAAAGGTTTG+AGG - chr4_4:61656039-61656058 Msa0692910:intron 20.0%
!! TTATAATAGGATTATAGGAT+AGG - chr4_4:61656237-61656256 Msa0692910:CDS 20.0%
!!! TTTTTTTCTTCCTCATATTT+TGG - chr4_4:61656305-61656324 Msa0692910:intron 20.0%
!!! TTTTTTCTTCCTCATATTTT+GGG - chr4_4:61656306-61656325 Msa0692910:intron 20.0%
!!! TCCATTAGGTTTTTTATATT+TGG + chr4_4:61656421-61656440 None:intergenic 20.0%
!!! AACACATTGTTTATTGATTT+AGG - chr4_4:61656448-61656467 Msa0692910:intron 20.0%
!!! ACACATTGTTTATTGATTTA+GGG - chr4_4:61656449-61656468 Msa0692910:intron 20.0%
!! TATTGCTTAATTCTTGATTA+AGG - chr4_4:61656701-61656720 Msa0692910:intron 20.0%
!! TATTTGCATATAATTCAAAC+AGG - chr4_4:61656935-61656954 Msa0692910:intron 20.0%
!!! CACATTTTTATCCTATATAT+TGG - chr4_4:61658485-61658504 Msa0692910:intron 20.0%
!! GAGTTAAAAATCCAATATAT+AGG + chr4_4:61658499-61658518 None:intergenic 20.0%
!! AGTACATAATGAATTTATCT+TGG - chr4_4:61658818-61658837 Msa0692910:intron 20.0%
!!! ATTTAAAGCTTCAAAATGTT+GGG - chr4_4:61658989-61659008 Msa0692910:CDS 20.0%
!! GTAATTTAGTTAAGAATTCA+AGG - chr4_4:61659256-61659275 Msa0692910:intron 20.0%
!! AATTTAGTTAAGAATTCAAG+GGG - chr4_4:61659258-61659277 Msa0692910:intron 20.0%
!! ATTATTGCAATAATGTGAAA+AGG + chr4_4:61659475-61659494 None:intergenic 20.0%
!!! ACTAGAATTTTTTACTTTCA+TGG - chr4_4:61659525-61659544 Msa0692910:intron 20.0%
!!! CTAGAATTTTTTACTTTCAT+GGG - chr4_4:61659526-61659545 Msa0692910:intron 20.0%
!!! TAGAATTTTTTACTTTCATG+GGG - chr4_4:61659527-61659546 Msa0692910:intron 20.0%
!! TGTGAATTAATATGATATGA+AGG + chr4_4:61659783-61659802 None:intergenic 20.0%
!!! ATTTTTGTTAGAAAACACAA+TGG - chr4_4:61660020-61660039 Msa0692910:intron 20.0%
!! ATATACTTACTAAAAAGATG+TGG - chr4_4:61660091-61660110 Msa0692910:intron 20.0%
!! TATAAATCCATATACTTGAA+TGG - chr4_4:61660697-61660716 Msa0692910:intron 20.0%
! AGGTGCATATAATATAAGAA+AGG + chr4_4:61655880-61655899 None:intergenic 25.0%
! AGAGTATACTACAATATAAC+AGG + chr4_4:61655900-61655919 None:intergenic 25.0%
! GTTATATTGTAGTATACTCT+TGG - chr4_4:61655900-61655919 Msa0692910:intron 25.0%
! TTTCATAATGAAATTGAACC+AGG - chr4_4:61656149-61656168 Msa0692910:intron 25.0%
! GCCAAATATAAAAAACCTAA+TGG - chr4_4:61656417-61656436 Msa0692910:intron 25.0%
! ATGTGTTAGTTATATCCATT+AGG + chr4_4:61656435-61656454 None:intergenic 25.0%
! ATCAAGAATTAAGCAATAGT+GGG + chr4_4:61656699-61656718 None:intergenic 25.0%
! AATCAAGAATTAAGCAATAG+TGG + chr4_4:61656700-61656719 None:intergenic 25.0%
! AGAAATTCATTAATCTGTGA+AGG + chr4_4:61657576-61657595 None:intergenic 25.0%
! GGAAGTAAAATAAATAAGTG+TGG + chr4_4:61657601-61657620 None:intergenic 25.0%
! TTATCTAGAAAGCTATTGTT+AGG - chr4_4:61658026-61658045 Msa0692910:intron 25.0%
!!! AAGTTTTATGAACTATATGG+TGG + chr4_4:61658272-61658291 None:intergenic 25.0%
!!! CGAAAGTTTTATGAACTATA+TGG + chr4_4:61658275-61658294 None:intergenic 25.0%
! TTCATAAAACTTTCGATACA+AGG - chr4_4:61658280-61658299 Msa0692910:intron 25.0%
!!! CAGATGTGATTTCTAAAATA+TGG + chr4_4:61658750-61658769 None:intergenic 25.0%
! CATAATGAATTTATCTTGGA+TGG - chr4_4:61658822-61658841 Msa0692910:intron 25.0%
!!! CAACATTTTGAAGCTTTAAA+TGG + chr4_4:61658990-61659009 None:intergenic 25.0%
!! CATTTAAAGCTTCAAAATGT+TGG - chr4_4:61658988-61659007 Msa0692910:CDS 25.0%
! AAATTACCCTAAATACAATG+TGG + chr4_4:61659243-61659262 None:intergenic 25.0%
!!! GTTGTTTTTAAGAACTTGTT+TGG - chr4_4:61659299-61659318 Msa0692910:intron 25.0%
! AGTAAAAAATTCTAGTGAAG+AGG + chr4_4:61659521-61659540 None:intergenic 25.0%
! ACATCATAAATTTGTAATGC+CGG + chr4_4:61659983-61660002 None:intergenic 25.0%
CTCAGATAAGGAAAATACTT+GGG + chr4_4:61655593-61655612 None:intergenic 30.0%
ACTCAGATAAGGAAAATACT+TGG + chr4_4:61655594-61655613 None:intergenic 30.0%
AACTAGTAACTACTCAGATA+AGG + chr4_4:61655605-61655624 None:intergenic 30.0%
!!! CTAGTTAGTTCCAGTTTTTT+TGG - chr4_4:61655619-61655638 Msa0692910:three_prime_UTR 30.0%
! AAAGGTTTAACTTACGGAAA+CGG + chr4_4:61655826-61655845 None:intergenic 30.0%
!! CGAATTTCTAAGTGTTTTTG+TGG - chr4_4:61656071-61656090 Msa0692910:intron 30.0%
! TGAGATGACTTGCATAATAA+AGG + chr4_4:61656116-61656135 None:intergenic 30.0%
AATAGGATTATAGGATAGGA+TGG - chr4_4:61656241-61656260 Msa0692910:CDS 30.0%
!! ATTGTTTATTGATTTAGGGC+CGG - chr4_4:61656453-61656472 Msa0692910:intron 30.0%
TCTTACAGTGAACAAATGAT+GGG + chr4_4:61656623-61656642 None:intergenic 30.0%
TTTAGGTCTCATCTTACTTA+AGG - chr4_4:61656654-61656673 Msa0692910:intron 30.0%
ATCTTACTTAAGGTCTTCTT+TGG - chr4_4:61656664-61656683 Msa0692910:intron 30.0%
! AGTTAAAGAGTTGATTGACA+AGG - chr4_4:61656782-61656801 Msa0692910:intron 30.0%
! AATCCAATTGTCCTTTTACA+TGG - chr4_4:61657020-61657039 Msa0692910:intron 30.0%
AAACCATGTAAAAGGACAAT+TGG + chr4_4:61657026-61657045 None:intergenic 30.0%
!! TTTATTTCTGAAGTTACCCT+TGG - chr4_4:61657093-61657112 Msa0692910:intron 30.0%
GAAAGGAATGAACATAACAT+AGG + chr4_4:61657259-61657278 None:intergenic 30.0%
TGACTAAAATGAAGAGAGAA+AGG + chr4_4:61657276-61657295 None:intergenic 30.0%
TTAATTAGCATACAAGTACC+TGG + chr4_4:61657376-61657395 None:intergenic 30.0%
GGTTATCATATTGTGTGATT+CGG - chr4_4:61657503-61657522 Msa0692910:intron 30.0%
! TAGGCTATCTTCTAAAGAAA+TGG - chr4_4:61657547-61657566 Msa0692910:intron 30.0%
!! ATTGGTTTATCTACCAGTTT+TGG - chr4_4:61657648-61657667 Msa0692910:intron 30.0%
TAATGTAGGATTTCCAAAAC+TGG + chr4_4:61657664-61657683 None:intergenic 30.0%
!!! TATCATCGGCTTTTTAATGT+AGG + chr4_4:61657678-61657697 None:intergenic 30.0%
CATTAAAAAGCCGATGATAT+TGG - chr4_4:61657679-61657698 Msa0692910:intron 30.0%
ATGCTAGTGTATATACAGAA+GGG - chr4_4:61657902-61657921 Msa0692910:intron 30.0%
ATGTAGAAACTGTTAAGAGT+GGG + chr4_4:61658216-61658235 None:intergenic 30.0%
ATCTTCATTCCAAAACATGA+AGG - chr4_4:61658424-61658443 Msa0692910:CDS 30.0%
TTGAGAATGTAGTTGCTTAA+AGG + chr4_4:61658723-61658742 None:intergenic 30.0%
!!! GTACTTTTGGTTTGTATGAT+TGG + chr4_4:61658803-61658822 None:intergenic 30.0%
!! AATGTTGGGTTTTATGACTT+TGG - chr4_4:61659003-61659022 Msa0692910:intron 30.0%
TTAGTTGTCTTTCCAACTAT+GGG - chr4_4:61659208-61659227 Msa0692910:intron 30.0%
ATGGATACCACATTGTATTT+AGG - chr4_4:61659233-61659252 Msa0692910:intron 30.0%
TGGATACCACATTGTATTTA+GGG - chr4_4:61659234-61659253 Msa0692910:intron 30.0%
!! AGGGGAAGTATCAAAATATT+AGG - chr4_4:61659276-61659295 Msa0692910:intron 30.0%
!! GGGGAAGTATCAAAATATTA+GGG - chr4_4:61659277-61659296 Msa0692910:intron 30.0%
! TAGTTTGCATATACACGTAA+CGG + chr4_4:61659656-61659675 None:intergenic 30.0%
AACTTACATTTGTCCAATCA+AGG + chr4_4:61659712-61659731 None:intergenic 30.0%
!! AATATGATATGAAGGTGCTA+TGG + chr4_4:61659775-61659794 None:intergenic 30.0%
! GTTAATTTTATGATCAGTGG+TGG - chr4_4:61659923-61659942 Msa0692910:intron 30.0%
GCAGATAAAAATGGTATTTC+CGG - chr4_4:61659961-61659980 Msa0692910:intron 30.0%
! GGCTTTCAAATTTGTTTAAC+AGG - chr4_4:61660112-61660131 Msa0692910:intron 30.0%
AGCAGAAAACACTCATAATT+TGG - chr4_4:61660138-61660157 Msa0692910:intron 30.0%
GCAGAAAACACTCATAATTT+GGG - chr4_4:61660139-61660158 Msa0692910:intron 30.0%
CAGAAAACACTCATAATTTG+GGG - chr4_4:61660140-61660159 Msa0692910:intron 30.0%
AGAAAACACTCATAATTTGG+GGG - chr4_4:61660141-61660160 Msa0692910:intron 30.0%
TTCTGTTGTGAAACTCATAA+AGG - chr4_4:61660391-61660410 Msa0692910:CDS 30.0%
TTTACTGTCTTTGTATCCTT+CGG + chr4_4:61660425-61660444 None:intergenic 30.0%
!!! GTTTGGTGTTTTTCCTAAAA+AGG - chr4_4:61660511-61660530 Msa0692910:five_prime_UTR 30.0%
TTGAATGGTTATCAATTCAG+TGG - chr4_4:61660553-61660572 Msa0692910:intron 30.0%
TGAATGGTTATCAATTCAGT+GGG - chr4_4:61660554-61660573 Msa0692910:intron 30.0%
TGAATGTCCATTCAAGTATA+TGG + chr4_4:61660707-61660726 None:intergenic 30.0%
! AAGTGATGATGAAGATTGAG+TGG - chr4_4:61655391-61655410 Msa0692910:three_prime_UTR 35.0%
ACAACACATACAACACATCT+GGG - chr4_4:61655509-61655528 Msa0692910:three_prime_UTR 35.0%
GTAATAGCAGCCAAAAAAAC+TGG + chr4_4:61655632-61655651 None:intergenic 35.0%
TTAGTTCCCTTCACTGAAAA+TGG - chr4_4:61655656-61655675 Msa0692910:three_prime_UTR 35.0%
TTGATTCTGTTGACGTCTTT+AGG + chr4_4:61655759-61655778 None:intergenic 35.0%
! AAGGTTTAACTTACGGAAAC+GGG + chr4_4:61655825-61655844 None:intergenic 35.0%
TATTGTAGTATACTCTTGGC+TGG - chr4_4:61655904-61655923 Msa0692910:intron 35.0%
CTTCAGATTGAAGATGTATC+TGG - chr4_4:61655967-61655986 Msa0692910:CDS 35.0%
TATATGTGTGGATGTCGTAT+TGG + chr4_4:61656019-61656038 None:intergenic 35.0%
TTACTCTGAATTACGTGGAA+AGG - chr4_4:61656172-61656191 Msa0692910:intron 35.0%
TACTCTGAATTACGTGGAAA+GGG - chr4_4:61656173-61656192 Msa0692910:intron 35.0%
ATAGGATAGGATGGAAACTA+TGG - chr4_4:61656250-61656269 Msa0692910:CDS 35.0%
TGACCTGAACTGTTTATAAG+TGG - chr4_4:61656350-61656369 Msa0692910:intron 35.0%
GACCTGAACTGTTTATAAGT+GGG - chr4_4:61656351-61656370 Msa0692910:intron 35.0%
ACCTGAACTGTTTATAAGTG+GGG - chr4_4:61656352-61656371 Msa0692910:intron 35.0%
!!! TTTTACAAAACCGACTTGCA+AGG + chr4_4:61656388-61656407 None:intergenic 35.0%
GTCTTACAGTGAACAAATGA+TGG + chr4_4:61656624-61656643 None:intergenic 35.0%
!! GTAAGACTTTTCCTAGCTTT+AGG - chr4_4:61656637-61656656 Msa0692910:intron 35.0%
ACTCAACAGTACTTGTGTAA+GGG - chr4_4:61656726-61656745 Msa0692910:intron 35.0%
! TAAAGAGTTGATTGACAAGG+AGG - chr4_4:61656785-61656804 Msa0692910:intron 35.0%
GGCAATGTTAGTATTATGCT+GGG + chr4_4:61656831-61656850 None:intergenic 35.0%
TTCACACAACTACTCATGAT+AGG + chr4_4:61656978-61656997 None:intergenic 35.0%
!!! TCCTTTTACATGGTTTTGAC+AGG - chr4_4:61657030-61657049 Msa0692910:intron 35.0%
ACCTGTCAAAACCATGTAAA+AGG + chr4_4:61657034-61657053 None:intergenic 35.0%
CAGGTGCTAAAAAAATATGC+AGG - chr4_4:61657049-61657068 Msa0692910:intron 35.0%
AAATATGCAGGAGACAGAAT+TGG - chr4_4:61657061-61657080 Msa0692910:intron 35.0%
TAATGAGGAGTGAAATCCAA+GGG + chr4_4:61657112-61657131 None:intergenic 35.0%
ATAATGAGGAGTGAAATCCA+AGG + chr4_4:61657113-61657132 None:intergenic 35.0%
ATACACATATCCATTGCTTG+AGG - chr4_4:61657158-61657177 Msa0692910:intron 35.0%
AAAAAGCCGATGATATTGGT+TGG - chr4_4:61657683-61657702 Msa0692910:intron 35.0%
ATAATTGACTGCAAAGTCGA+TGG + chr4_4:61657732-61657751 None:intergenic 35.0%
GATGCTAGTGTATATACAGA+AGG - chr4_4:61657901-61657920 Msa0692910:intron 35.0%
!!! GGGATAAAGGCTTTTTAAGT+AGG + chr4_4:61657985-61658004 None:intergenic 35.0%
AGATAATTGACAGTGATGTG+TGG + chr4_4:61658012-61658031 None:intergenic 35.0%
! CGTAAAGAGAGTATAAGACA+CGG - chr4_4:61658050-61658069 Msa0692910:intron 35.0%
! GTAAAGAGAGTATAAGACAC+GGG - chr4_4:61658051-61658070 Msa0692910:intron 35.0%
GATCTTCACGTAGAATCTTA+AGG - chr4_4:61658077-61658096 Msa0692910:intron 35.0%
! GTCACATTTTCATCCAATGT+CGG - chr4_4:61658108-61658127 Msa0692910:intron 35.0%
TGTAGAAACTGTTAAGAGTG+GGG + chr4_4:61658215-61658234 None:intergenic 35.0%
GATGTAGAAACTGTTAAGAG+TGG + chr4_4:61658217-61658236 None:intergenic 35.0%
! ATTCCAAAACATGAAGGCAT+TGG - chr4_4:61658430-61658449 Msa0692910:CDS 35.0%
! TAACCAATGCCTTCATGTTT+TGG + chr4_4:61658436-61658455 None:intergenic 35.0%
AGCTAGGGAACATTGATATA+AGG + chr4_4:61658557-61658576 None:intergenic 35.0%
TTATATCAATGTTCCCTAGC+TGG - chr4_4:61658556-61658575 Msa0692910:intron 35.0%
!! GTAGTTGCTTAAAGGTATCA+TGG + chr4_4:61658715-61658734 None:intergenic 35.0%
!!! TTTTGGTTTGTATGATTGGC+AGG + chr4_4:61658799-61658818 None:intergenic 35.0%
TAGCTCACATCACATGTAAA+TGG + chr4_4:61658896-61658915 None:intergenic 35.0%
GCAGCTTGAAATTTGAATCA+AGG + chr4_4:61658953-61658972 None:intergenic 35.0%
CATAGTTGGAAAGACAACTA+AGG + chr4_4:61659209-61659228 None:intergenic 35.0%
CTTAGTTGTCTTTCCAACTA+TGG - chr4_4:61659207-61659226 Msa0692910:intron 35.0%
TATCAAATGCTCATCCAACA+AGG + chr4_4:61659333-61659352 None:intergenic 35.0%
AAAAGGACTGGAAACAGAAA+AGG + chr4_4:61659458-61659477 None:intergenic 35.0%
TGCAATAATGTGAAAAGGAC+TGG + chr4_4:61659470-61659489 None:intergenic 35.0%
AGTTTGCATATACACGTAAC+GGG + chr4_4:61659655-61659674 None:intergenic 35.0%
! ACTGAAAGATATGTTGGTGA+AGG + chr4_4:61659684-61659703 None:intergenic 35.0%
! GCTAGTACTGAAAGATATGT+TGG + chr4_4:61659690-61659709 None:intergenic 35.0%
ATGGCAATAAACAATGCAAG+CGG + chr4_4:61659886-61659905 None:intergenic 35.0%
! GCGGTTAATTTTATGATCAG+TGG - chr4_4:61659920-61659939 Msa0692910:intron 35.0%
! TGTTGCTTCGCAGATAAAAA+TGG - chr4_4:61659952-61659971 Msa0692910:intron 35.0%
GAAAACACTCATAATTTGGG+GGG - chr4_4:61660142-61660161 Msa0692910:intron 35.0%
! CAAGCTTATTGCTGATTATG+CGG + chr4_4:61660175-61660194 None:intergenic 35.0%
ATTTGGCGTATAATTGCATC+AGG + chr4_4:61660332-61660351 None:intergenic 35.0%
ATGAGTTTCACAACAGAATC+CGG + chr4_4:61660389-61660408 None:intergenic 35.0%
! CATAAAGGAATTTGTTCCGA+AGG - chr4_4:61660406-61660425 Msa0692910:CDS 35.0%
CAGAGAAATGACAGAATGTT+TGG - chr4_4:61660494-61660513 Msa0692910:five_prime_UTR 35.0%
!!! ATCACTACTGGTTCCTTTTT+AGG + chr4_4:61660527-61660546 None:intergenic 35.0%
TAAAAAGGAACCAGTAGTGA+TGG - chr4_4:61660526-61660545 Msa0692910:intron 35.0%
GAATGGTTATCAATTCAGTG+GGG - chr4_4:61660555-61660574 Msa0692910:intron 35.0%
CTAGTGGAATCATTGAGTTA+TGG - chr4_4:61660588-61660607 Msa0692910:intron 35.0%
ATTGAGTGGCAGTTATCTGA+GGG - chr4_4:61655405-61655424 Msa0692910:three_prime_UTR 40.0%
!! TTATCTGAGGGAAAGCACTT+GGG - chr4_4:61655417-61655436 Msa0692910:three_prime_UTR 40.0%
TGTCACCGTGACATTAAATC+TGG - chr4_4:61655448-61655467 Msa0692910:three_prime_UTR 40.0%
GTCACCGTGACATTAAATCT+GGG - chr4_4:61655449-61655468 Msa0692910:three_prime_UTR 40.0%
GATGTGTTGTATGTGTTGTG+TGG + chr4_4:61655508-61655527 None:intergenic 40.0%
CACAACACATACAACACATC+TGG - chr4_4:61655508-61655527 Msa0692910:three_prime_UTR 40.0%
ATTAAATCTGGACCGCACAA+AGG + chr4_4:61655550-61655569 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG + chr4_4:61655448-61655467 None:intergenic 40.0%
! GAGCAACCATTTTCAGTGAA+GGG + chr4_4:61655665-61655684 None:intergenic 40.0%
! AGAGCAACCATTTTCAGTGA+AGG + chr4_4:61655666-61655685 None:intergenic 40.0%
TCAGCAACGACCTTGAATAT+GGG + chr4_4:61655705-61655724 None:intergenic 40.0%
TTCAGCAACGACCTTGAATA+TGG + chr4_4:61655706-61655725 None:intergenic 40.0%
! CGTCTTTAGGAAGAAAGGAA+GGG + chr4_4:61655746-61655765 None:intergenic 40.0%
! ACGTCTTTAGGAAGAAAGGA+AGG + chr4_4:61655747-61655766 None:intergenic 40.0%
! GTTGACGTCTTTAGGAAGAA+AGG + chr4_4:61655751-61655770 None:intergenic 40.0%
TGTCTGTGCTACGTATTTAC+CGG + chr4_4:61655947-61655966 None:intergenic 40.0%
AGTCATCTCATGCATCAGAA+AGG - chr4_4:61656126-61656145 Msa0692910:intron 40.0%
CCTGAACTGTTTATAAGTGG+GGG - chr4_4:61656353-61656372 Msa0692910:intron 40.0%
CAATTGCCTTAACCTTAGAC+CGG + chr4_4:61656475-61656494 None:intergenic 40.0%
GCAATTGAAACCCTTGCTTT+AGG - chr4_4:61656488-61656507 Msa0692910:intron 40.0%
GAGTTAGAGACCTAAAGCAA+GGG + chr4_4:61656501-61656520 None:intergenic 40.0%
AGAGTTAGAGACCTAAAGCA+AGG + chr4_4:61656502-61656521 None:intergenic 40.0%
! CAGTGAACAAATGATGGGAA+GGG + chr4_4:61656618-61656637 None:intergenic 40.0%
! ACAGTGAACAAATGATGGGA+AGG + chr4_4:61656619-61656638 None:intergenic 40.0%
GTAAGATGAGACCTAAAGCT+AGG + chr4_4:61656651-61656670 None:intergenic 40.0%
CACTCAACAGTACTTGTGTA+AGG - chr4_4:61656725-61656744 Msa0692910:intron 40.0%
CTCAACAGTACTTGTGTAAG+GGG - chr4_4:61656727-61656746 Msa0692910:intron 40.0%
! TGTACAGATAGCTTGATGAC+TGG - chr4_4:61656751-61656770 Msa0692910:intron 40.0%
! GTACAGATAGCTTGATGACT+GGG - chr4_4:61656752-61656771 Msa0692910:intron 40.0%
! TACAGATAGCTTGATGACTG+GGG - chr4_4:61656753-61656772 Msa0692910:intron 40.0%
TTAGTATTATGCTGGGAGTG+GGG + chr4_4:61656824-61656843 None:intergenic 40.0%
GTTAGTATTATGCTGGGAGT+GGG + chr4_4:61656825-61656844 None:intergenic 40.0%
TGTTAGTATTATGCTGGGAG+TGG + chr4_4:61656826-61656845 None:intergenic 40.0%
GGGCAATGTTAGTATTATGC+TGG + chr4_4:61656832-61656851 None:intergenic 40.0%
GCATGAGCTGAACAATAATG+AGG + chr4_4:61657127-61657146 None:intergenic 40.0%
TGTTCAGCTCATGCTTAGAA+TGG - chr4_4:61657133-61657152 Msa0692910:intron 40.0%
CTTGGACCAACCAATATCAT+CGG + chr4_4:61657692-61657711 None:intergenic 40.0%
! TTGATAGCACATACAGCTTC+TGG + chr4_4:61657755-61657774 None:intergenic 40.0%
CCTGAAAAATGACCAGATCA+TGG + chr4_4:61657861-61657880 None:intergenic 40.0%
!!! CCATGATCTGGTCATTTTTC+AGG - chr4_4:61657858-61657877 Msa0692910:intron 40.0%
!!! TGATCTGGTCATTTTTCAGG+TGG - chr4_4:61657861-61657880 Msa0692910:intron 40.0%
AGTGTATATACAGAAGGGAC+AGG - chr4_4:61657907-61657926 Msa0692910:intron 40.0%
GACTTCTAACTCACACTTGA+TGG - chr4_4:61658130-61658149 Msa0692910:intron 40.0%
GTAGAAACTGTTAAGAGTGG+GGG + chr4_4:61658214-61658233 None:intergenic 40.0%
ATATGGTGGTTAGATGACGT+GGG + chr4_4:61658258-61658277 None:intergenic 40.0%
TATATGGTGGTTAGATGACG+TGG + chr4_4:61658259-61658278 None:intergenic 40.0%
AGATCTCCACATTAGGCTAA+AGG - chr4_4:61658374-61658393 Msa0692910:intron 40.0%
! GAATTATCTAGCTCCAGCTA+GGG + chr4_4:61658572-61658591 None:intergenic 40.0%
! TGAATTATCTAGCTCCAGCT+AGG + chr4_4:61658573-61658592 None:intergenic 40.0%
!! GCTTAAAGGTATCATGGAGA+GGG + chr4_4:61658709-61658728 None:intergenic 40.0%
!! TGCTTAAAGGTATCATGGAG+AGG + chr4_4:61658710-61658729 None:intergenic 40.0%
AAGCAATTGCTAACTCCAAG+AGG + chr4_4:61658855-61658874 None:intergenic 40.0%
TGGAGTTAGCAATTGCTTAC+TGG - chr4_4:61658857-61658876 Msa0692910:intron 40.0%
! CACTCAAGCAGTAATTTGCA+AGG - chr4_4:61658916-61658935 Msa0692910:CDS 40.0%
! CATCACTAGAAAAGTACACG+TGG + chr4_4:61659073-61659092 None:intergenic 40.0%
ACAATGATACATAGCCTAGG+AGG + chr4_4:61659101-61659120 None:intergenic 40.0%
CTGACAATGATACATAGCCT+AGG + chr4_4:61659104-61659123 None:intergenic 40.0%
GGATGTCAGAGATAATAGAG+CGG + chr4_4:61659188-61659207 None:intergenic 40.0%
GTTTGGAAAGTTGTCCTTGT+TGG - chr4_4:61659316-61659335 Msa0692910:intron 40.0%
AGTATAATAACGCCAAGCAC+CGG + chr4_4:61659407-61659426 None:intergenic 40.0%
GAGATAAGTATGAGAGGATG+AGG - chr4_4:61659551-61659570 Msa0692910:intron 40.0%
! ATTCAAGTTACTCTCACCAC+TGG - chr4_4:61659593-61659612 Msa0692910:intron 40.0%
! CTGATTTAAAACAGAGCCAG+TGG + chr4_4:61659612-61659631 None:intergenic 40.0%
!!! CACTGGCTCTGTTTTAAATC+AGG - chr4_4:61659610-61659629 Msa0692910:intron 40.0%
!! CTTTCAGTACTAGCCTTGAT+TGG - chr4_4:61659696-61659715 Msa0692910:intron 40.0%
GCTTGCATTGTTTATTGCCA+TGG - chr4_4:61659885-61659904 Msa0692910:intron 40.0%
TGCATTGTTTATTGCCATGG+TGG - chr4_4:61659888-61659907 Msa0692910:intron 40.0%
GCATTGTTTATTGCCATGGT+GGG - chr4_4:61659889-61659908 Msa0692910:intron 40.0%
TTAGTTGTACCACTAAGCTG+AGG + chr4_4:61660060-61660079 None:intergenic 40.0%
AATCAGCAATAAGCTTGCAG+TGG - chr4_4:61660178-61660197 Msa0692910:intron 40.0%
TCTCTGTCAGAATGGCAAAA+GGG + chr4_4:61660480-61660499 None:intergenic 40.0%
TTCTCTGTCAGAATGGCAAA+AGG + chr4_4:61660481-61660500 None:intergenic 40.0%
! CTGTCATTTCTCTGTCAGAA+TGG + chr4_4:61660488-61660507 None:intergenic 40.0%
ATTCAATGCTCCATCACTAC+TGG + chr4_4:61660539-61660558 None:intergenic 40.0%
!! AGTAGTGATGGAGCATTGAA+TGG - chr4_4:61660538-61660557 Msa0692910:intron 40.0%
GATTGAGTGGCAGTTATCTG+AGG - chr4_4:61655404-61655423 Msa0692910:three_prime_UTR 45.0%
!! GTTATCTGAGGGAAAGCACT+TGG - chr4_4:61655416-61655435 Msa0692910:three_prime_UTR 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr4_4:61655456-61655475 None:intergenic 45.0%
ACACATTGCCACACAACATC+TGG - chr4_4:61655481-61655500 Msa0692910:three_prime_UTR 45.0%
CACATTGCCACACAACATCT+GGG - chr4_4:61655482-61655501 Msa0692910:three_prime_UTR 45.0%
!! CACAAAGGTGTTGTGTTGTG+TGG + chr4_4:61655535-61655554 None:intergenic 45.0%
CACAACACAACACCTTTGTG+CGG - chr4_4:61655535-61655554 Msa0692910:three_prime_UTR 45.0%
GCGGTCCAGATTTAATGTCA+CGG - chr4_4:61655554-61655573 Msa0692910:three_prime_UTR 45.0%
TTCAGTGAAGGGAACTAAGC+TGG + chr4_4:61655654-61655673 None:intergenic 45.0%
! TGTGCCATTGCCCATATTCA+AGG - chr4_4:61655692-61655711 Msa0692910:CDS 45.0%
ACGACCTTGAATATGGGCAA+TGG + chr4_4:61655699-61655718 None:intergenic 45.0%
!!! TGGCTGGTTTTAGACTCTAG+TGG - chr4_4:61655920-61655939 Msa0692910:intron 45.0%
!!! GGTTTTAGACTCTAGTGGAC+CGG - chr4_4:61655925-61655944 Msa0692910:intron 45.0%
CCACGTAATTCAGAGTAACC+TGG + chr4_4:61656170-61656189 None:intergenic 45.0%
CCAGGTTACTCTGAATTACG+TGG - chr4_4:61656167-61656186 Msa0692910:intron 45.0%
!! ATATTTTGGGAGTCGCGCAT+TGG - chr4_4:61656319-61656338 Msa0692910:intron 45.0%
CCCCCACTTATAAACAGTTC+AGG + chr4_4:61656356-61656375 None:intergenic 45.0%
! ATTGATTTAGGGCCGGTCTA+AGG - chr4_4:61656460-61656479 Msa0692910:intron 45.0%
ATAAAATTGACGCGCTGCGT+AGG + chr4_4:61656538-61656557 None:intergenic 45.0%
! TTTTCCTTGTTCTGCACCAG+TGG + chr4_4:61657002-61657021 None:intergenic 45.0%
TATCCATTGCTTGAGGAAGC+TGG - chr4_4:61657165-61657184 Msa0692910:intron 45.0%
ACATGGGCCATTGACATTCT+TGG - chr4_4:61657195-61657214 Msa0692910:intron 45.0%
GGCCATTGACATTCTTGGTT+GGG - chr4_4:61657200-61657219 Msa0692910:intron 45.0%
GCCATTGACATTCTTGGTTG+GGG - chr4_4:61657201-61657220 Msa0692910:intron 45.0%
ACCCCAACCAAGAATGTCAA+TGG + chr4_4:61657205-61657224 None:intergenic 45.0%
GGTTGGGGTTTCTCTGATTT+AGG - chr4_4:61657216-61657235 Msa0692910:intron 45.0%
TTTGATACCACATCGCAGGA+AGG + chr4_4:61657338-61657357 None:intergenic 45.0%
! AAAGCGCGAACACTTTTACC+AGG - chr4_4:61657355-61657374 Msa0692910:intron 45.0%
CCTCAGCAACAAAGCTATCA+AGG + chr4_4:61657423-61657442 None:intergenic 45.0%
!! CCTTGATAGCTTTGTTGCTG+AGG - chr4_4:61657420-61657439 Msa0692910:intron 45.0%
!! TGATAGCTTTGTTGCTGAGG+TGG - chr4_4:61657423-61657442 Msa0692910:intron 45.0%
TCAACACAGAGCGAAACAAG+TGG + chr4_4:61657622-61657641 None:intergenic 45.0%
ACTTGTTTCGCTCTGTGTTG+AGG - chr4_4:61657621-61657640 Msa0692910:intron 45.0%
CTTGTTTCGCTCTGTGTTGA+GGG - chr4_4:61657622-61657641 Msa0692910:intron 45.0%
! ATATTGGTTGGTCCAAGCCT+TGG - chr4_4:61657695-61657714 Msa0692910:intron 45.0%
CTAGTGACTATGCCATGATC+TGG - chr4_4:61657846-61657865 Msa0692910:intron 45.0%
CCTAGCAACTTTACCTAGAG+CGG - chr4_4:61657933-61657952 Msa0692910:intron 45.0%
GTGAGTTAGAAGTCCGACAT+TGG + chr4_4:61658124-61658143 None:intergenic 45.0%
! GTGGATTGACTCACACTTGA+GGG + chr4_4:61658177-61658196 None:intergenic 45.0%
!! AGTGGATTGACTCACACTTG+AGG + chr4_4:61658178-61658197 None:intergenic 45.0%
TGGTTGCCTTTAGCCTAATG+TGG + chr4_4:61658383-61658402 None:intergenic 45.0%
TTGGATGGCTCATAACCTCT+TGG - chr4_4:61658837-61658856 Msa0692910:intron 45.0%
CTAGTGATGTCTATCCTCCT+AGG - chr4_4:61659084-61659103 Msa0692910:intron 45.0%
! GTCTTTCCAACTATGGGCTA+TGG - chr4_4:61659214-61659233 Msa0692910:intron 45.0%
TGGTATCCATAGCCCATAGT+TGG + chr4_4:61659223-61659242 None:intergenic 45.0%
TGGGGAGAGATAAGTATGAG+AGG - chr4_4:61659545-61659564 Msa0692910:intron 45.0%
! TTGTTTATTGCCATGGTGGG+AGG - chr4_4:61659892-61659911 Msa0692910:intron 45.0%
CGAAAGAATCCTCAGCTTAG+TGG - chr4_4:61660048-61660067 Msa0692910:intron 45.0%
ATACGCCAAATACCCGATTG+TGG - chr4_4:61660341-61660360 Msa0692910:CDS 45.0%
ATGAGGAAGGTGACCACAAT+CGG + chr4_4:61660357-61660376 None:intergenic 45.0%
CCTTCCTCATGTTGAAAGAC+CGG - chr4_4:61660367-61660386 Msa0692910:CDS 45.0%
GAATCCGGTCTTTCAACATG+AGG + chr4_4:61660374-61660393 None:intergenic 45.0%
!!! ATTGATATTTTTTTTTTAAA+CGG + chr4_4:61656853-61656872 None:intergenic 5.0%
!!! ATTTAATTTAATCATTTTTT+TGG - chr4_4:61658678-61658697 Msa0692910:intron 5.0%
!!! TTTAATTTAATCATTTTTTT+GGG - chr4_4:61658679-61658698 Msa0692910:intron 5.0%
!! ATTAAAATCAATTAAAATTA+TGG + chr4_4:61660733-61660752 None:intergenic 5.0%
GTGTGGCAATGTGTGTTGTG+TGG + chr4_4:61655475-61655494 None:intergenic 50.0%
TAGCGAGAGTTCGAGCGAAA+GGG + chr4_4:61655785-61655804 None:intergenic 50.0%
TGCGCGACTCCCAAAATATG+AGG + chr4_4:61656318-61656337 None:intergenic 50.0%
GCAATCCTCACCTTGCAAGT+CGG - chr4_4:61656375-61656394 Msa0692910:intron 50.0%
!! CAAAACCGACTTGCAAGGTG+AGG + chr4_4:61656383-61656402 None:intergenic 50.0%
! TTAGGGCCGGTCTAAGGTTA+AGG - chr4_4:61656466-61656485 Msa0692910:intron 50.0%
! AGATAGCTTGATGACTGGGG+TGG - chr4_4:61656756-61656775 Msa0692910:intron 50.0%
! GATAGCTTGATGACTGGGGT+GGG - chr4_4:61656757-61656776 Msa0692910:intron 50.0%
! ATAGCTTGATGACTGGGGTG+GGG - chr4_4:61656758-61656777 Msa0692910:intron 50.0%
GAGTAGTTGTGTGAAGCCAC+TGG - chr4_4:61656983-61657002 Msa0692910:intron 50.0%
AGACCAGCTTCCTCAAGCAA+TGG + chr4_4:61657171-61657190 None:intergenic 50.0%
GGGCCATTGACATTCTTGGT+TGG - chr4_4:61657199-61657218 Msa0692910:intron 50.0%
GAAACTTCCTTCCTGCGATG+TGG - chr4_4:61657328-61657347 Msa0692910:intron 50.0%
GCTCTGTGTTGAGGGTGAAT+TGG - chr4_4:61657630-61657649 Msa0692910:intron 50.0%
! CCGCTCTAGGTAAAGTTGCT+AGG + chr4_4:61657936-61657955 None:intergenic 50.0%
GATGTGTGGCTGAGGGATAA+AGG + chr4_4:61657998-61658017 None:intergenic 50.0%
TGACAGTGATGTGTGGCTGA+GGG + chr4_4:61658005-61658024 None:intergenic 50.0%
TTGACAGTGATGTGTGGCTG+AGG + chr4_4:61658006-61658025 None:intergenic 50.0%
GGGGGAACATATGTGATGAG+TGG + chr4_4:61658196-61658215 None:intergenic 50.0%
ATCACAGGCGTTTGGGCTAA+AGG + chr4_4:61658315-61658334 None:intergenic 50.0%
CAGTGGTATCACAGGCGTTT+GGG + chr4_4:61658322-61658341 None:intergenic 50.0%
ACAGTGGTATCACAGGCGTT+TGG + chr4_4:61658323-61658342 None:intergenic 50.0%
AACGCCTGTGATACCACTGT+TGG - chr4_4:61658323-61658342 Msa0692910:intron 50.0%
ACGCCTGTGATACCACTGTT+GGG - chr4_4:61658324-61658343 Msa0692910:intron 50.0%
TGACCCAACAGTGGTATCAC+AGG + chr4_4:61658330-61658349 None:intergenic 50.0%
ATACCACTGTTGGGTCACGA+TGG - chr4_4:61658333-61658352 Msa0692910:intron 50.0%
TACCACTGTTGGGTCACGAT+GGG - chr4_4:61658334-61658353 Msa0692910:intron 50.0%
! GGAGATCTCACCCGTGTTTT+AGG + chr4_4:61658362-61658381 None:intergenic 50.0%
ACGGGTGAGATCTCCACATT+AGG - chr4_4:61658367-61658386 Msa0692910:intron 50.0%
TGTTGTCCAAACCACTTGCG+TGG + chr4_4:61658403-61658422 None:intergenic 50.0%
!! TATAAGTAGGTGCCGGTGCT+TGG - chr4_4:61659392-61659411 Msa0692910:intron 50.0%
GGTGACCACAATCGGGTATT+TGG + chr4_4:61660349-61660368 None:intergenic 50.0%
TGAGGAAGGTGACCACAATC+GGG + chr4_4:61660356-61660375 None:intergenic 50.0%
CCGGTCTTTCAACATGAGGA+AGG + chr4_4:61660370-61660389 None:intergenic 50.0%
TATCAATTCAGTGGGGCTGC+TGG - chr4_4:61660562-61660581 Msa0692910:intron 50.0%
TGTGTGGCCCAGATGTTGTG+TGG + chr4_4:61655492-61655511 None:intergenic 55.0%
GTAGCGAGAGTTCGAGCGAA+AGG + chr4_4:61655786-61655805 None:intergenic 55.0%
TCGCTCGAACTCTCGCTACA+CGG - chr4_4:61655787-61655806 Msa0692910:CDS 55.0%
AAATTGACGCGCTGCGTAGG+AGG + chr4_4:61656535-61656554 None:intergenic 55.0%
! TAGCTTGATGACTGGGGTGG+GGG - chr4_4:61656759-61656778 Msa0692910:intron 55.0%
GAAGCCACTGGTGCAGAACA+AGG - chr4_4:61656995-61657014 Msa0692910:intron 55.0%
! AGGAAGCTGGTCTCGAGACA+TGG - chr4_4:61657178-61657197 Msa0692910:intron 55.0%
! GGAAGCTGGTCTCGAGACAT+GGG - chr4_4:61657179-61657198 Msa0692910:intron 55.0%
GCGCTTTGATACCACATCGC+AGG + chr4_4:61657342-61657361 None:intergenic 55.0%
GCAACAGCAGAACCAAGGCT+TGG + chr4_4:61657710-61657729 None:intergenic 55.0%
CGATGGCAACAGCAGAACCA+AGG + chr4_4:61657715-61657734 None:intergenic 55.0%
CTAGAGCGGCAGCTTATGCT+GGG - chr4_4:61657947-61657966 Msa0692910:intron 55.0%
TAGAGCGGCAGCTTATGCTG+GGG - chr4_4:61657948-61657967 Msa0692910:intron 55.0%
ACCACTGTTGGGTCACGATG+GGG - chr4_4:61658335-61658354 Msa0692910:intron 55.0%
CACGATGGGGGCCTAAAACA+CGG - chr4_4:61658348-61658367 Msa0692910:intron 55.0%
ACGATGGGGGCCTAAAACAC+GGG - chr4_4:61658349-61658368 Msa0692910:intron 55.0%
GCTAAAGGCAACCACGCAAG+TGG - chr4_4:61658389-61658408 Msa0692910:intron 55.0%
AGGCAACCACGCAAGTGGTT+TGG - chr4_4:61658394-61658413 Msa0692910:CDS 55.0%
CCAGCATAAGCTGCCGCTCT+AGG + chr4_4:61657949-61657968 None:intergenic 60.0%
CCTAGAGCGGCAGCTTATGC+TGG - chr4_4:61657946-61657965 Msa0692910:intron 60.0%
CCACTGTTGGGTCACGATGG+GGG - chr4_4:61658336-61658355 Msa0692910:intron 60.0%
CCCCCATCGTGACCCAACAG+TGG + chr4_4:61658339-61658358 None:intergenic 65.0%
! GCCATGGTGGGAGGATGCTG+CGG - chr4_4:61659901-61659920 Msa0692910:intron 65.0%
ACCGCAGCATCCTCCCACCA+TGG + chr4_4:61659905-61659924 None:intergenic 65.0%
GTGGGGCTGCTGGTCACTAG+TGG - chr4_4:61660572-61660591 Msa0692910:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61655389 61660762 61655389 ID=Msa0692910;Name=Msa0692910
chr4_4 mRNA 61655389 61660762 61655389 ID=Msa0692910-mRNA-1;Parent=Msa0692910;Name=Msa0692910-mRNA-1;_AED=0.33;_eAED=0.33;_QI=99|1|1|1|0.88|0.8|10|296|300
chr4_4 exon 61655389 61655840 61655389 ID=Msa0692910-mRNA-1:exon:17124;Parent=Msa0692910-mRNA-1
chr4_4 exon 61655952 61656017 61655952 ID=Msa0692910-mRNA-1:exon:17123;Parent=Msa0692910-mRNA-1
chr4_4 exon 61656178 61656273 61656178 ID=Msa0692910-mRNA-1:exon:17122;Parent=Msa0692910-mRNA-1
chr4_4 exon 61658182 61658271 61658182 ID=Msa0692910-mRNA-1:exon:17121;Parent=Msa0692910-mRNA-1
chr4_4 exon 61658391 61658486 61658391 ID=Msa0692910-mRNA-1:exon:17120;Parent=Msa0692910-mRNA-1
chr4_4 exon 61658775 61658824 61658775 ID=Msa0692910-mRNA-1:exon:17119;Parent=Msa0692910-mRNA-1
chr4_4 exon 61658914 61659011 61658914 ID=Msa0692910-mRNA-1:exon:17118;Parent=Msa0692910-mRNA-1
chr4_4 exon 61659100 61659194 61659100 ID=Msa0692910-mRNA-1:exon:17117;Parent=Msa0692910-mRNA-1
chr4_4 exon 61660321 61660538 61660321 ID=Msa0692910-mRNA-1:exon:17116;Parent=Msa0692910-mRNA-1
chr4_4 exon 61660726 61660762 61660726 ID=Msa0692910-mRNA-1:exon:17115;Parent=Msa0692910-mRNA-1
chr4_4 five_prime_UTR 61660726 61660762 61660726 ID=Msa0692910-mRNA-1:five_prime_utr;Parent=Msa0692910-mRNA-1
chr4_4 five_prime_UTR 61660477 61660538 61660477 ID=Msa0692910-mRNA-1:five_prime_utr;Parent=Msa0692910-mRNA-1
chr4_4 CDS 61660321 61660476 61660321 ID=Msa0692910-mRNA-1:cds;Parent=Msa0692910-mRNA-1
chr4_4 CDS 61659100 61659194 61659100 ID=Msa0692910-mRNA-1:cds;Parent=Msa0692910-mRNA-1
chr4_4 CDS 61658914 61659011 61658914 ID=Msa0692910-mRNA-1:cds;Parent=Msa0692910-mRNA-1
chr4_4 CDS 61658775 61658824 61658775 ID=Msa0692910-mRNA-1:cds;Parent=Msa0692910-mRNA-1
chr4_4 CDS 61658391 61658486 61658391 ID=Msa0692910-mRNA-1:cds;Parent=Msa0692910-mRNA-1
chr4_4 CDS 61658182 61658271 61658182 ID=Msa0692910-mRNA-1:cds;Parent=Msa0692910-mRNA-1
chr4_4 CDS 61656178 61656273 61656178 ID=Msa0692910-mRNA-1:cds;Parent=Msa0692910-mRNA-1
chr4_4 CDS 61655952 61656017 61655952 ID=Msa0692910-mRNA-1:cds;Parent=Msa0692910-mRNA-1
chr4_4 CDS 61655685 61655840 61655685 ID=Msa0692910-mRNA-1:cds;Parent=Msa0692910-mRNA-1
chr4_4 three_prime_UTR 61655389 61655684 61655389 ID=Msa0692910-mRNA-1:three_prime_utr;Parent=Msa0692910-mRNA-1
Gene Sequence

>Msa0692910

ATGGTTGCTCTGTTTTCTGTGCCATTGCCCATATTCAAGGTCGTTGCTGAAACTGATGCTGACTCATTCCCTTCCTTTCTTCCTAAAGACGTCAACAGAATCAAAGACCCTTTCGCTCGAACTCTCGCTACACGGATTCAAAGACTTCCCGTTTCCGTTAAGTTCTCTGAAAATCCTATCATGAGTAGTTGTGTGAAGCCACTGGTGCAGAACAAGGAAAATCCAATTGTCCTTTTACATGGTTTTGACAGCTCATGCTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTCTCGAGACATGGGCCATTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAGAAACTTCCTTCCTGCGATGTGGTATCAAAGCGCGAACACTTTTACCAGTTTTGGAAATCCTACATTAAAAAGCCGATGATATTGGTTGGTCCAAGCCTTGGTTCTGCTGTTGCCATCGACTTTGCAGTCAATTATCCAGAAGCTGTGGAAAAGCTTGTTTTGATTGATGCTAGTGTATATACAGAAGGGACAGGAAACCTAGCAACTTTACCTAGAGCGGCAGCTTATGCTGGGATTGGCCGCTTGCATTGTTTATTGCCATGGTGGGAGGATGCTGCGGTTAATTTTATGATCAGTGGTGGCTACAATGTTGCTTCGCAGATAAAAATGGTAAAGCAGAAAACACTCATAATTTGGGGGGAGAATGACCGCATAATCAGCAATAAGCTTGCAGTGCAACTGCACTGTGAATTACCTGATGCAATTATACGCCAAATACCCGATTGTGGTCACCTTCCTCATGTTGAAAGACCGGATTCTGTTGTGAAACTCATAAAGGAATTTGTTCCGAAGGATACAAAGACAGTAAATCAATATGTTTCATCATTATGA

Protein sequence

>Msa0692910

MVALFSVPLPIFKVVAETDADSFPSFLPKDVNRIKDPFARTLATRIQRLPVSVKFSENPIMSSCVKPLVQNKENPIVLLHGFDSSCLEWRYTYPLLEEAGLETWAIDILGWGFSDLEKLPSCDVVSKREHFYQFWKSYIKKPMILVGPSLGSAVAIDFAVNYPEAVEKLVLIDASVYTEGTGNLATLPRAAAYAGIGRLHCLLPWWEDAAVNFMISGGYNVASQIKMVKQKTLIIWGENDRIISNKLAVQLHCELPDAIIRQIPDCGHLPHVERPDSVVKLIKEFVPKDTKTVNQYVSSL*