AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641030 MtrunA17_Chr4g0025521 95.511 646 28 1 54 698 1 646 0.0 1187
Msa0641030 MtrunA17_Chr1g0177751 46.345 684 264 25 54 709 1 609 3.05e-152 457
Msa0641030 MtrunA17_Chr7g0267481 45.291 669 266 19 54 692 1 599 1.99e-151 455
Msa0641030 MtrunA17_Chr3g0141941 44.893 421 173 15 143 545 56 435 4.81e-95 304
Msa0641030 MtrunA17_Chr1g0155681 58.052 267 97 4 271 529 172 431 9.40e-95 306
Msa0641030 MtrunA17_Chr8g0373801 50.890 281 131 3 269 543 388 667 6.81e-83 280
Msa0641030 MtrunA17_Chr8g0387321 52.708 277 118 3 269 539 185 454 8.10e-78 261
Msa0641030 MtrunA17_Chr5g0403251 50.000 292 137 5 259 545 329 616 8.76e-78 264
Msa0641030 MtrunA17_Chr3g0141931 45.172 290 141 4 262 543 158 437 1.62e-71 239
Msa0641030 MtrunA17_Chr4g0028701 39.506 324 144 5 269 546 245 562 8.71e-64 224
Msa0641030 MtrunA17_Chr4g0008591 42.908 282 124 4 269 542 196 448 1.26e-61 217
Msa0641030 MtrunA17_Chr7g0240371 43.590 273 133 6 269 537 137 392 6.77e-60 210
Msa0641030 MtrunA17_Chr2g0327021 37.910 335 176 8 251 561 227 553 6.01e-59 210
Msa0641030 MtrunA17_Chr1g0151681 36.336 333 172 9 232 536 186 506 3.39e-52 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641030 AT2G35940.3 44.200 681 273 23 54 700 1 608 1.95e-127 394
Msa0641030 AT2G35940.1 44.200 681 273 23 54 700 1 608 1.95e-127 394
Msa0641030 AT2G35940.2 44.200 681 273 23 54 700 1 608 1.95e-127 394
Msa0641030 AT2G16400.1 49.077 379 152 10 202 575 57 399 5.21e-97 308
Msa0641030 AT4G34610.2 50.568 352 143 10 228 569 94 424 4.15e-95 305
Msa0641030 AT4G34610.4 50.568 352 143 10 228 569 94 424 4.15e-95 305
Msa0641030 AT4G34610.3 50.568 352 143 10 228 569 94 424 4.15e-95 305
Msa0641030 AT4G34610.1 50.568 352 143 10 228 569 94 424 4.15e-95 305
Msa0641030 AT1G75410.1 52.703 296 99 8 258 535 160 432 7.41e-88 286
Msa0641030 AT1G75410.2 52.703 296 99 8 258 535 160 432 7.41e-88 286
Msa0641030 AT1G19700.1 53.069 277 99 6 270 530 166 427 5.97e-87 283
Msa0641030 AT1G19700.3 53.069 277 99 6 270 530 166 427 5.97e-87 283
Msa0641030 AT1G19700.5 53.069 277 99 6 270 530 166 427 5.97e-87 283
Msa0641030 AT1G19700.4 53.069 277 99 6 270 530 166 427 5.97e-87 283
Msa0641030 AT1G19700.2 53.069 277 99 6 270 530 166 427 5.97e-87 283
Msa0641030 AT2G27220.1 46.648 358 144 9 199 554 12 324 1.00e-85 277
Msa0641030 AT2G27220.3 46.648 358 144 9 199 554 12 324 1.00e-85 277
Msa0641030 AT2G27220.2 44.415 376 144 10 199 554 12 342 9.78e-82 267
Msa0641030 AT2G23760.2 52.809 267 112 3 261 521 233 491 3.04e-80 268
Msa0641030 AT2G23760.1 52.809 267 112 3 261 521 233 491 3.04e-80 268
Msa0641030 AT2G23760.3 52.809 267 112 3 261 521 233 491 3.04e-80 268
Msa0641030 AT4G36870.2 51.351 259 115 3 269 521 312 565 2.23e-78 266
Msa0641030 AT4G36870.1 51.351 259 115 3 269 521 312 565 2.23e-78 266
Msa0641030 AT2G23760.4 44.201 319 112 4 261 521 233 543 1.82e-70 243
Msa0641030 AT1G75410.3 50.973 257 90 7 258 501 160 393 3.41e-70 235
Msa0641030 AT5G41410.1 46.014 276 130 3 270 529 194 466 1.95e-68 236
Msa0641030 AT4G36870.4 47.500 240 115 3 269 502 312 546 7.10e-63 219
Msa0641030 AT4G36870.3 47.059 238 115 3 269 500 312 544 1.17e-61 216
Msa0641030 AT1G75430.1 40.484 289 146 8 263 534 10 289 1.66e-60 205
Msa0641030 AT5G02030.1 41.137 299 123 4 250 525 151 419 1.66e-59 211
Msa0641030 AT4G32980.1 37.460 315 165 7 230 531 154 449 1.22e-51 187
Msa0641030 AT4G32980.2 37.460 315 165 7 230 531 154 449 1.22e-51 187
Msa0641030 AT2G27990.1 38.562 306 152 8 227 526 221 496 3.37e-49 182
Msa0641030 AT1G75430.2 35.526 228 128 7 263 480 10 228 3.69e-32 126
Msa0641030 AT2G27990.2 31.154 260 143 8 227 480 221 450 2.81e-23 103

Find 229 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTTTGAGATTGTCTTTA+AGG 0.052548 4_3:-40706982 None:intergenic
AAATTCTTTAACGTGTAATT+TGG 0.155568 4_3:-40704330 None:intergenic
GCATGAATGTAATTTGTATT+TGG 0.157811 4_3:+40709910 Msa0641030:three_prime_UTR
AGAAAGATTAATGGAACTTT+TGG 0.216027 4_3:-40703804 None:intergenic
TGATGTTGACATTGAATTAT+TGG 0.252974 4_3:-40709081 None:intergenic
CAAAATCACATATAATTTCT+AGG 0.265756 4_3:-40709644 None:intergenic
ATTCCACCTTCCAACTTTCA+TGG 0.270274 4_3:+40704650 Msa0641030:CDS
CTCTCTCAGAATTTACATTT+AGG 0.274546 4_3:+40709478 Msa0641030:CDS
GGGTCCTTTCAATCCAATTC+TGG 0.288442 4_3:+40709122 Msa0641030:CDS
AATTCTGGTTTCCATCTTGC+AGG 0.297418 4_3:+40709137 Msa0641030:CDS
GTGTTAAGTTAGAAGGTTCT+AGG 0.298713 4_3:+40707081 Msa0641030:CDS
TCTTGCAAGCATAACCTTAT+CGG 0.300640 4_3:-40708065 None:intergenic
ACAAATAGATCAAAAGAATT+AGG 0.307786 4_3:+40708969 Msa0641030:CDS
TCACTGTTGGAGAAAGGTTT+TGG 0.308937 4_3:-40709049 None:intergenic
AGGAGGGACGATTGATGAAA+TGG 0.313418 4_3:+40709498 Msa0641030:exon
TTTGAGCAAGCAACAGGATA+TGG 0.320173 4_3:+40706933 Msa0641030:CDS
TGCTTGGGTGTTAAGTTAGA+AGG 0.330959 4_3:+40707074 Msa0641030:CDS
TCAGAGTAAGGTACGTAGTT+TGG 0.340254 4_3:-40704482 None:intergenic
GGTTCTCCCCACGCGCTTCA+TGG 0.344045 4_3:+40704569 Msa0641030:CDS
CTTCGCAGCAAACGCCTTAC+CGG 0.347714 4_3:+40704936 Msa0641030:CDS
TTGCTAGCTCTATTATGATT+GGG 0.355291 4_3:-40703761 None:intergenic
CTTGCCTGAAAGAGCTGTTT+CGG 0.355933 4_3:+40707193 Msa0641030:CDS
AGGAGGGGAAGAAAGATTAA+TGG 0.357424 4_3:-40703813 None:intergenic
ATTGCTAGCTCTATTATGAT+TGG 0.358539 4_3:-40703762 None:intergenic
TCAAGGTAGTTTCCTTTCAA+TGG 0.367613 4_3:+40709196 Msa0641030:CDS
GAGTTTCGCCCGCAGCAAAT+TGG 0.368022 4_3:+40704869 Msa0641030:CDS
GACAAACCACGCTGATAAAC+TGG 0.368350 4_3:-40704902 None:intergenic
AATCATCATGGTGGTGGTTA+TGG 0.369811 4_3:+40709317 Msa0641030:CDS
TACATACTTTAATATGGTAT+TGG 0.369864 4_3:+40709801 Msa0641030:three_prime_UTR
GTTATGCTTGCAAGACAAAC+TGG 0.371730 4_3:+40708073 Msa0641030:CDS
TGATCTATTTGTGTTATCCT+TGG 0.372128 4_3:-40708958 None:intergenic
GGAGGGACGATTGATGAAAT+GGG 0.373488 4_3:+40709499 Msa0641030:exon
CACTATAACATGTGGGGATC+AGG 0.378783 4_3:+40704761 Msa0641030:CDS
AGAATTAATTCTGACAGATA+TGG 0.379407 4_3:+40704373 Msa0641030:CDS
CAAGACAAACTGGACTTACT+AGG 0.381649 4_3:+40708083 Msa0641030:CDS
TCTCAATGGAAGATGTTAGA+AGG 0.381842 4_3:+40709345 Msa0641030:CDS
ATATCACACTTTGCATTTGA+TGG 0.388198 4_3:-40706905 None:intergenic
CAAGTTGAGTTGGATTAAGT+TGG 0.389678 4_3:+40709770 Msa0641030:three_prime_UTR
TTTCATTTCCACTCAATAAA+GGG 0.390624 4_3:-40709295 None:intergenic
CTGTTTCGGTTCTTCGTGCT+TGG 0.390827 4_3:+40707207 Msa0641030:CDS
GAAATCCAACCGTCGGTAGA+AGG 0.392044 4_3:+40704434 Msa0641030:CDS
CATGAATGTAATTTGTATTT+GGG 0.393400 4_3:+40709911 Msa0641030:three_prime_UTR
TTATATAATAAGCGTCTGTT+TGG 0.393613 4_3:-40709737 None:intergenic
ACGGTAGCCGAGGAGGAAAA+TGG 0.396762 4_3:-40704725 None:intergenic
GTCTACTAATTAATTGCAAA+TGG 0.398084 4_3:+40703868 Msa0641030:five_prime_UTR
ATTATTCTCCTCTTGCTCCT+TGG 0.402178 4_3:-40708931 None:intergenic
GTTGCTGTGACAGCGTTATC+AGG 0.403199 4_3:-40704794 None:intergenic
ACGCCTTACCGGTCGGCCTC+TGG 0.404712 4_3:+40704947 Msa0641030:CDS
CATAACCTTATCGGAGTCCT+TGG 0.408384 4_3:-40708056 None:intergenic
AGTTAGAAGGTTCTAGGCTT+AGG 0.408879 4_3:+40707087 Msa0641030:CDS
CTGATCCCCACATGTTATAG+TGG 0.410131 4_3:-40704760 None:intergenic
AAAGTGATGTGTATGGGATT+TGG 0.412182 4_3:+40710008 Msa0641030:three_prime_UTR
TGCAAGATGGAAACCAGAAT+TGG 0.412205 4_3:-40709135 None:intergenic
AAGGTATACATACTTTAATA+TGG 0.412519 4_3:+40709795 Msa0641030:three_prime_UTR
GATATGGCAACGTACTTTCA+TGG 0.416361 4_3:+40704389 Msa0641030:CDS
AACGCTACCACTAACAATAA+TGG 0.417083 4_3:+40704548 Msa0641030:CDS
GCTGCAGTGCCCGCTGTTGT+CGG 0.418316 4_3:-40707127 None:intergenic
ATTTGCTGCGGGCGAAACTC+TGG 0.420271 4_3:-40704866 None:intergenic
TTGAAAGGAAACTACCTTGA+TGG 0.429916 4_3:-40709193 None:intergenic
AACACTACTCCTTCTCATTC+AGG 0.436567 4_3:+40709550 Msa0641030:three_prime_UTR
AATGGTGTTTCTCTAACTCT+TGG 0.436577 4_3:+40709407 Msa0641030:CDS
TTGATATTGAAAACAGAAAG+AGG 0.441083 4_3:+40709590 Msa0641030:three_prime_UTR
AGAACCGAAACAGCTCTTTC+AGG 0.441770 4_3:-40707197 None:intergenic
AAGCTTGTTAATTTGAAGCT+TGG 0.443810 4_3:-40704249 None:intergenic
TGGTGAGATTGAGGTATCTC+CGG 0.447805 4_3:+40704967 Msa0641030:CDS
GGGAGAACCATTATTGTTAG+TGG 0.451641 4_3:-40704555 None:intergenic
TCATCATTTGAGCAAGCAAC+AGG 0.451763 4_3:+40706927 Msa0641030:CDS
CTCAATCAACACCACTTGCT+TGG 0.452628 4_3:+40704620 Msa0641030:CDS
GCTCCTAGGTTCCATGGAAA+TGG 0.455886 4_3:+40709389 Msa0641030:CDS
TAAGACGGCTAGCAAGACTT+TGG 0.456104 4_3:+40707040 Msa0641030:CDS
TTGAAGTTTCAACAAAATCC+TGG 0.456383 4_3:+40709681 Msa0641030:three_prime_UTR
TTGAAATCACTGTTGGAGAA+AGG 0.457475 4_3:-40709055 None:intergenic
GATGTGGTGGAAATCATTAA+AGG 0.459536 4_3:+40709943 Msa0641030:three_prime_UTR
TTGGGTGAAGATGATTGCTT+GGG 0.462431 4_3:+40707059 Msa0641030:CDS
TTGGAACTTGAAATCACTGT+TGG 0.463404 4_3:-40709062 None:intergenic
CAGCGGGCACTGCAGCAACT+TGG 0.465763 4_3:+40707134 Msa0641030:CDS
AAGACGGCTAGCAAGACTTT+GGG 0.467699 4_3:+40707041 Msa0641030:CDS
TTAACGTGTAATTTGGATTG+TGG 0.467877 4_3:-40704323 None:intergenic
TTAGTGAGCAATTAGCTCCT+AGG 0.468409 4_3:+40709375 Msa0641030:CDS
GTACGTAGTTTGGATTCATA+AGG 0.468791 4_3:-40704472 None:intergenic
TGAAGTTGTGAATGTGGATA+AGG 0.475584 4_3:+40705084 Msa0641030:CDS
TCTCAGAATTTACATTTAGG+AGG 0.475857 4_3:+40709481 Msa0641030:exon
TTATAAGACTCAAGTTGAGT+TGG 0.479257 4_3:+40709760 Msa0641030:three_prime_UTR
GGTAGCCGTGGAGGCGAGGA+AGG 0.483983 4_3:+40704989 Msa0641030:CDS
GAGTTGGATTAAGTTGGAAA+AGG 0.490139 4_3:+40709776 Msa0641030:three_prime_UTR
CTGAGAGAGAAATCCATGTT+GGG 0.492621 4_3:-40709464 None:intergenic
GTGCCCGCTGTTGTCGGAGT+TGG 0.494381 4_3:-40707121 None:intergenic
GAATGATTCATAGCAATGCT+TGG 0.495045 4_3:+40707156 Msa0641030:CDS
AACTGGACTTACTAGGAGTC+AGG 0.495725 4_3:+40708090 Msa0641030:CDS
CAATTAGCTCCTAGGTTCCA+TGG 0.502313 4_3:+40709383 Msa0641030:CDS
TCACCAGAGGCCGACCGGTA+AGG 0.503130 4_3:-40704950 None:intergenic
TCACCAACTCCGACAACAGC+GGG 0.504024 4_3:+40707118 Msa0641030:CDS
AAGTACATTTCTTCAACCAT+TGG 0.504400 4_3:-40708900 None:intergenic
CTTTCTTCCCCTCCTCGTGC+GGG 0.504475 4_3:+40703821 Msa0641030:five_prime_UTR
AATGAATACCCTTTATTGAG+TGG 0.507581 4_3:+40709287 Msa0641030:CDS
GAAGTTGTGAATGTGGATAA+GGG 0.514101 4_3:+40705085 Msa0641030:CDS
TGGTTTCCACAAGCGAACTC+TGG 0.515046 4_3:-40708880 None:intergenic
TAGTTTCCTTTCAATGGACA+TGG 0.518524 4_3:+40709202 Msa0641030:CDS
TCTTTCTTCCCCTCCTCGTG+CGG 0.519485 4_3:+40703820 Msa0641030:five_prime_UTR
TTCCACACGCAAAATTCACT+TGG 0.521622 4_3:+40703712 Msa0641030:five_prime_UTR
GACGAAATCATGTTGCCACC+AGG 0.522786 4_3:-40709699 None:intergenic
CCACAGAGTTTGAAGTTGAA+AGG 0.523168 4_3:+40709249 Msa0641030:CDS
TCAATTCCATGTCCATTGAA+AGG 0.523266 4_3:-40709208 None:intergenic
CTCAGAATTTACATTTAGGA+GGG 0.524512 4_3:+40709482 Msa0641030:exon
TGCTAGCTCTATTATGATTG+GGG 0.525049 4_3:-40703760 None:intergenic
TTCAATGTCAACATCACCAA+TGG 0.525243 4_3:+40709088 Msa0641030:CDS
TGTAGGAGTGTCGGTAGTGT+TGG 0.526282 4_3:-40704675 None:intergenic
GAAACCAGAATTGGATTGAA+AGG 0.527024 4_3:-40709126 None:intergenic
GGAAAATTAACCAGGTATGT+AGG 0.528627 4_3:+40709822 Msa0641030:three_prime_UTR
CCTCTCTCTTCAACCCAACA+TGG 0.528825 4_3:+40709451 Msa0641030:CDS
GGTGAGATTGAGGTATCTCC+GGG 0.529905 4_3:+40704968 Msa0641030:CDS
TTATTGTTAGTGGTAGCGTT+GGG 0.532546 4_3:-40704545 None:intergenic
TCCGGGTAGCCGTGGAGGCG+AGG 0.533224 4_3:+40704985 Msa0641030:CDS
TTTGGGTGAAGATGATTGCT+TGG 0.533846 4_3:+40707058 Msa0641030:CDS
GACCCTCCTTCTCCTCCCAT+TGG 0.534808 4_3:-40709104 None:intergenic
AGTGTTGGATCCATGAAAGT+TGG 0.535269 4_3:-40704660 None:intergenic
AGATATGAAAGTGATGTGTA+TGG 0.535817 4_3:+40710001 Msa0641030:three_prime_UTR
TCTGAGAGAGAAATCCATGT+TGG 0.535848 4_3:-40709465 None:intergenic
GAAACTTCATATGGTTGTGT+AGG 0.538056 4_3:-40704692 None:intergenic
TAAACGCCAGAGTTCGCTTG+TGG 0.538237 4_3:+40708874 Msa0641030:CDS
TGCAATTAATTAGTAGACAA+AGG 0.538398 4_3:-40703863 None:intergenic
TTGAGATTGTCTTTAAGGCA+AGG 0.539418 4_3:-40706977 None:intergenic
TGAGATTGTCTTTAAGGCAA+GGG 0.540791 4_3:-40706976 None:intergenic
AATGGTTGAAGAAATGTACT+TGG 0.541831 4_3:+40708902 Msa0641030:CDS
TGAAAGGAAACTACCTTGAT+GGG 0.542083 4_3:-40709192 None:intergenic
GTCGGCCTCTGGTGAGATTG+AGG 0.544425 4_3:+40704958 Msa0641030:CDS
TTATCCCAAGGACTCCGATA+AGG 0.544643 4_3:+40708051 Msa0641030:CDS
CATCAGATGATCCTGCAAGA+TGG 0.545078 4_3:-40709148 None:intergenic
CGTGGAGGCGAGGAAGGTGG+TGG 0.547728 4_3:+40704995 Msa0641030:CDS
ATAACCTTATCGGAGTCCTT+GGG 0.549058 4_3:-40708055 None:intergenic
AATACAAATTACATTCATGC+AGG 0.550785 4_3:-40709907 None:intergenic
ATGAGAAGGAGTAGTGTTGA+TGG 0.552006 4_3:-40709545 None:intergenic
TTCAACTTCAAACTCTGTGG+TGG 0.552624 4_3:-40709246 None:intergenic
CAATCTCACCAGAGGCCGAC+CGG 0.552708 4_3:-40704955 None:intergenic
TCCTCGCCTCCACGGCTACC+CGG 0.553350 4_3:-40704986 None:intergenic
ATTATTGTTAGTGGTAGCGT+TGG 0.555283 4_3:-40704546 None:intergenic
AATCTCTTCACAAATTAAGA+CGG 0.557355 4_3:+40707025 Msa0641030:CDS
ACATCACCAATGGGAGGAGA+AGG 0.558319 4_3:+40709098 Msa0641030:CDS
TTAGAGAAACACCATTTCCA+TGG 0.559032 4_3:-40709400 None:intergenic
TCAATGTCAACATCACCAAT+GGG 0.559905 4_3:+40709089 Msa0641030:CDS
GTAAACCTTCTACCGACGGT+TGG 0.560766 4_3:-40704439 None:intergenic
TATGAAAACCAATTTGCTGC+GGG 0.560781 4_3:-40704877 None:intergenic
TAATTTGTTCCTGAATGAGA+AGG 0.560909 4_3:-40709559 None:intergenic
CTCGTCCCCACTATAACATG+TGG 0.566142 4_3:+40704753 Msa0641030:CDS
AGCCGTGGAGGCGAGGAAGG+TGG 0.567527 4_3:+40704992 Msa0641030:CDS
GGAAGAAACCAAGGAGCAAG+AGG 0.569522 4_3:+40708923 Msa0641030:CDS
ATGGAATTCCCGCACGAGGA+GGG 0.570104 4_3:-40703829 None:intergenic
TCACCAATGGGAGGAGAAGG+AGG 0.571505 4_3:+40709101 Msa0641030:CDS
GAACAATGTAGGTAGAGCTA+AGG 0.571744 4_3:+40706868 Msa0641030:intron
ACGAGGAGTCACGGTAGCCG+AGG 0.573764 4_3:-40704735 None:intergenic
TGATCCCCACATGTTATAGT+GGG 0.573944 4_3:-40704759 None:intergenic
TGGTTATGGATCATTCTCAA+TGG 0.575128 4_3:+40709331 Msa0641030:CDS
AGTTCGCTTGTGGAAACCAA+TGG 0.575659 4_3:+40708884 Msa0641030:CDS
ATGCATGCAGCAGTAGGGTA+TGG 0.576937 4_3:-40710053 None:intergenic
GACAAAGGCAGCTACAAGGA+TGG 0.577961 4_3:-40703848 None:intergenic
TGGAATTCCCGCACGAGGAG+GGG 0.581086 4_3:-40703828 None:intergenic
GTAATAACAACAAAGAGAAG+AGG 0.583452 4_3:+40705143 Msa0641030:CDS
AATATTGAATCTAGTTCAAG+TGG 0.585962 4_3:+40705172 Msa0641030:CDS
TGGTGTTGATTGAGTGATGA+AGG 0.588479 4_3:-40704611 None:intergenic
GTGGATAAGGGAATCATCAA+AGG 0.589254 4_3:+40705097 Msa0641030:CDS
CACCACCTTCCTCGCCTCCA+CGG 0.590288 4_3:-40704994 None:intergenic
TCATTCAACTCCTACATACC+TGG 0.591092 4_3:-40709832 None:intergenic
CACATGTTATAGTGGGGACG+AGG 0.591269 4_3:-40704752 None:intergenic
TTTGCATGCATGCAGCAGTA+GGG 0.591778 4_3:-40710058 None:intergenic
AGTAGACAAAGGCAGCTACA+AGG 0.593196 4_3:-40703852 None:intergenic
AGAGGAGAATAATGACTCCA+AGG 0.594942 4_3:+40708941 Msa0641030:CDS
CTTAAATCCATGAAGCGCGT+GGG 0.595475 4_3:-40704576 None:intergenic
AATCATCAAAGGAGAATCTG+TGG 0.597233 4_3:+40705108 Msa0641030:CDS
CGAGGAGGAAAATGGATGGA+AGG 0.598355 4_3:-40704717 None:intergenic
TCACACTTTGCATTTGATGG+TGG 0.598415 4_3:-40706902 None:intergenic
TGGAAGGTGGAAACTTCATA+TGG 0.602748 4_3:-40704701 None:intergenic
ATATGGTTGTGTAGGAGTGT+CGG 0.603447 4_3:-40704684 None:intergenic
GAGGTATCTCCGGGTAGCCG+TGG 0.603840 4_3:+40704977 Msa0641030:CDS
ACACCATTTCCATGGAACCT+AGG 0.604931 4_3:-40709392 None:intergenic
CAGGATCATCTGATGTGCAA+AGG 0.605084 4_3:+40709156 Msa0641030:CDS
GGTGGAGTTTCGACCATGAA+CGG 0.607341 4_3:+40705013 Msa0641030:CDS
GTCTGTAAACCTTCTACCGA+CGG 0.607577 4_3:-40704443 None:intergenic
ATCAAAGGAGAATCTGTGGA+AGG 0.608300 4_3:+40705112 Msa0641030:CDS
ACTTAAATCCATGAAGCGCG+TGG 0.609090 4_3:-40704577 None:intergenic
TCGTCCCCACTATAACATGT+GGG 0.609880 4_3:+40704754 Msa0641030:CDS
GATTTCGTCAAACTCAGCGT+TGG 0.617385 4_3:+40709713 Msa0641030:three_prime_UTR
ATGGTATTGGAAAATTAACC+AGG 0.618579 4_3:+40709814 Msa0641030:three_prime_UTR
GGTGGAAGAGAAAACAATGG+AGG 0.618595 4_3:+40705193 Msa0641030:CDS
CTATGAAAACCAATTTGCTG+CGG 0.619359 4_3:-40704878 None:intergenic
TCTTGATGAAGTTGTGAATG+TGG 0.620303 4_3:+40705078 Msa0641030:CDS
ATTGAATCTAGTTCAAGTGG+TGG 0.621430 4_3:+40705175 Msa0641030:CDS
TAGCTCTATTATGATTGGGG+TGG 0.621491 4_3:-40703757 None:intergenic
CCATGTTGGGTTGAAGAGAG+AGG 0.622427 4_3:-40709451 None:intergenic
CTTTCAGGCAAGCCTCTCTG+AGG 0.622743 4_3:-40707182 None:intergenic
GGAGGAAAATGGATGGAAGG+TGG 0.623156 4_3:-40704714 None:intergenic
ATTTGGGTAGTACGTAGATG+TGG 0.624481 4_3:+40709927 Msa0641030:three_prime_UTR
AATGAAAATCATCATGGTGG+TGG 0.625687 4_3:+40709311 Msa0641030:CDS
AATGTACTTGGAAGAAACCA+AGG 0.627170 4_3:+40708914 Msa0641030:CDS
AGTGGAAATGAAAATCATCA+TGG 0.627811 4_3:+40709305 Msa0641030:CDS
AGGAGTCACGGTAGCCGAGG+AGG 0.628325 4_3:-40704732 None:intergenic
GATCCATGAAAGTTGGAAGG+TGG 0.629051 4_3:-40704653 None:intergenic
GATATGAAAGTGATGTGTAT+GGG 0.630522 4_3:+40710002 Msa0641030:three_prime_UTR
TAGCCGAGGAGGAAAATGGA+TGG 0.630526 4_3:-40704721 None:intergenic
GCTTGTTAGCATGCTAGATG+AGG 0.632117 4_3:+40705276 Msa0641030:CDS
GTATCTCCGGGTAGCCGTGG+AGG 0.632306 4_3:+40704980 Msa0641030:CDS
GTGGAAGAGAAAACAATGGA+GGG 0.633833 4_3:+40705194 Msa0641030:CDS
ATAGTGGGGACGAGGAGTCA+CGG 0.640127 4_3:-40704744 None:intergenic
CATAGACCAGTTTATCAGCG+TGG 0.640750 4_3:+40704896 Msa0641030:CDS
TTAAATCCATGAAGCGCGTG+GGG 0.642133 4_3:-40704575 None:intergenic
TGTGACCTGCAGTTATCCCA+AGG 0.642673 4_3:+40708039 Msa0641030:intron
CACCAATGGGAGGAGAAGGA+GGG 0.642966 4_3:+40709102 Msa0641030:CDS
CCTTTCAACTTCAAACTCTG+TGG 0.643049 4_3:-40709249 None:intergenic
GAATAGTAACTCCAAGCAAG+TGG 0.643953 4_3:-40704631 None:intergenic
TGGGTAGTACGTAGATGTGG+TGG 0.646489 4_3:+40709930 Msa0641030:three_prime_UTR
AAAGGAGAATCTGTGGAAGG+AGG 0.648166 4_3:+40705115 Msa0641030:CDS
CGTCCCCACTATAACATGTG+GGG 0.666378 4_3:+40704755 Msa0641030:CDS
AAGTTTCAACAAAATCCTGG+TGG 0.668888 4_3:+40709684 Msa0641030:three_prime_UTR
GCAGCAAACGCCTTACCGGT+CGG 0.670260 4_3:+40704940 Msa0641030:CDS
GATTGAGTGATGAAGGCGCG+TGG 0.674684 4_3:-40704604 None:intergenic
CAGTTCTGAAATCCAACCGT+CGG 0.674796 4_3:+40704427 Msa0641030:CDS
ATCACCAACTCCGACAACAG+CGG 0.680001 4_3:+40707117 Msa0641030:CDS
AAGGATGGAATTCCCGCACG+AGG 0.681112 4_3:-40703833 None:intergenic
GATGGAATTCCCGCACGAGG+AGG 0.681883 4_3:-40703830 None:intergenic
TTGGATCCATGAAAGTTGGA+AGG 0.681916 4_3:-40704656 None:intergenic
ATTGAGTGATGAAGGCGCGT+GGG 0.683811 4_3:-40704603 None:intergenic
AGATACCTCAATCTCACCAG+AGG 0.686383 4_3:-40704963 None:intergenic
ATGTCAACATCACCAATGGG+AGG 0.690189 4_3:+40709092 Msa0641030:CDS
ATGAAAACAAAATCACATGG+TGG 0.692742 4_3:+40704217 Msa0641030:exon
AAAATGAAAACAAAATCACA+TGG 0.701682 4_3:+40704214 Msa0641030:exon
AGTGGTGGAAGAGAAAACAA+TGG 0.709372 4_3:+40705190 Msa0641030:CDS
GATCCCCACATGTTATAGTG+GGG 0.711349 4_3:-40704758 None:intergenic
AAACTACGTACCTTACTCTG+AGG 0.712519 4_3:+40704484 Msa0641030:CDS
AATGCTTGGAGACCTCAGAG+AGG 0.745246 4_3:+40707170 Msa0641030:CDS
GGAAATGAAAATCATCATGG+TGG 0.766816 4_3:+40709308 Msa0641030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATCAAAAAAAAAAAAAA+AGG - chr4_3:40707417-40707436 None:intergenic 10.0%
!!! ATTATTAATTTTCTTTTTAG+GGG - chr4_3:40707481-40707500 None:intergenic 10.0%
!!! CATTATTAATTTTCTTTTTA+GGG - chr4_3:40707482-40707501 None:intergenic 10.0%
!!! TCATTATTAATTTTCTTTTT+AGG - chr4_3:40707483-40707502 None:intergenic 10.0%
!!! ATTTTTATAAAAGTATTTTG+TGG - chr4_3:40708511-40708530 None:intergenic 10.0%
!!! TAGATTGTATTTTTCAAAAA+TGG + chr4_3:40706420-40706439 Msa0641030:intron 15.0%
!!! TATTTTTCAAAAATGGTTAT+TGG + chr4_3:40706427-40706446 Msa0641030:intron 15.0%
!!! AGTTAAATTAACCATAATTT+TGG + chr4_3:40707719-40707738 Msa0641030:intron 15.0%
!! TATATCAAAATTTGTAAGTA+AGG - chr4_3:40707979-40707998 None:intergenic 15.0%
!! ATATAGAAAAATTAAGTACT+TGG + chr4_3:40707994-40708013 Msa0641030:intron 15.0%
!! TATTAACAATCAGATTAAAT+CGG - chr4_3:40708185-40708204 None:intergenic 15.0%
!! TATAAAGATGTACAAAAATT+TGG + chr4_3:40709966-40709985 Msa0641030:three_prime_UTR 15.0%
!! GAAAAAGTGAAAATAAAAAC+TGG + chr4_3:40703903-40703922 Msa0641030:five_prime_UTR 20.0%
!!! TGTTTGAAACAATTATTAAC+CGG + chr4_3:40704040-40704059 Msa0641030:intron 20.0%
!! TATTAATCATCTGATTCTTA+GGG - chr4_3:40704106-40704125 None:intergenic 20.0%
!! ATATTAATCATCTGATTCTT+AGG - chr4_3:40704107-40704126 None:intergenic 20.0%
!!! TTGTTTTCATTTTCATTACT+TGG - chr4_3:40704207-40704226 None:intergenic 20.0%
!! AAAATGAAAACAAAATCACA+TGG + chr4_3:40704214-40704233 Msa0641030:exon 20.0%
!!! AAAAAAGAAAACCTTCTTTT+TGG - chr4_3:40704296-40704315 None:intergenic 20.0%
!! AAATTCTTTAACGTGTAATT+TGG - chr4_3:40704333-40704352 None:intergenic 20.0%
!!! AATTAACTTTCCACAAATTT+TGG + chr4_3:40705321-40705340 Msa0641030:intron 20.0%
!!! ATTAACTTTCCACAAATTTT+GGG + chr4_3:40705322-40705341 Msa0641030:intron 20.0%
!! AAAATATTTGTGTGAAAGTA+CGG + chr4_3:40705396-40705415 Msa0641030:intron 20.0%
!! TTTGTTGAAAATATATGTTG+AGG + chr4_3:40705679-40705698 Msa0641030:intron 20.0%
!! TATGGTAACATATTAACATA+AGG + chr4_3:40706139-40706158 Msa0641030:intron 20.0%
!! ATGGTAACATATTAACATAA+GGG + chr4_3:40706140-40706159 Msa0641030:intron 20.0%
!! TACCCATAAACAAATTTAAT+TGG + chr4_3:40706261-40706280 Msa0641030:intron 20.0%
!!! AGCCAATTAAATTTGTTTAT+GGG - chr4_3:40706266-40706285 None:intergenic 20.0%
!!! TAGCCAATTAAATTTGTTTA+TGG - chr4_3:40706267-40706286 None:intergenic 20.0%
!! AAAATAACAACTTTGATATG+AGG - chr4_3:40706370-40706389 None:intergenic 20.0%
!! GAGTAATATTAAATACTTAC+GGG - chr4_3:40707253-40707272 None:intergenic 20.0%
!! GGAGTAATATTAAATACTTA+CGG - chr4_3:40707254-40707273 None:intergenic 20.0%
!! TTAATATTACTCCATTCAAT+AGG + chr4_3:40707261-40707280 Msa0641030:intron 20.0%
!! TAATAATGACACATTCTTAA+TGG + chr4_3:40707494-40707513 Msa0641030:intron 20.0%
!!! TATTGATTTGTGCAAAATTA+TGG + chr4_3:40707637-40707656 Msa0641030:intron 20.0%
!! TTAATTCACAACCAAAATTA+TGG - chr4_3:40707733-40707752 None:intergenic 20.0%
!!! ATTTTTTAACGTGATAATTG+AGG + chr4_3:40707783-40707802 Msa0641030:intron 20.0%
!!! TTAAAAGTACAGAAATAGAT+TGG - chr4_3:40708122-40708141 None:intergenic 20.0%
!!! AATCTATTTCTGTACTTTTA+AGG + chr4_3:40708121-40708140 Msa0641030:intron 20.0%
!! CATCTTTGTATTATTGTAAT+GGG - chr4_3:40708270-40708289 None:intergenic 20.0%
!! TTTGACAACAATAATTCTAA+AGG + chr4_3:40708709-40708728 Msa0641030:intron 20.0%
!! ACAAATAGATCAAAAGAATT+AGG + chr4_3:40708969-40708988 Msa0641030:CDS 20.0%
!!! ATTAATTTGATCAAGTTTTG+TGG - chr4_3:40708997-40709016 None:intergenic 20.0%
!! CAAAATCACATATAATTTCT+AGG - chr4_3:40709647-40709666 None:intergenic 20.0%
!! AAGGTATACATACTTTAATA+TGG + chr4_3:40709795-40709814 Msa0641030:three_prime_UTR 20.0%
!! TACATACTTTAATATGGTAT+TGG + chr4_3:40709801-40709820 Msa0641030:three_prime_UTR 20.0%
!!! CATGAATGTAATTTGTATTT+GGG + chr4_3:40709911-40709930 Msa0641030:three_prime_UTR 20.0%
!! AGAAAGATTAATGGAACTTT+TGG - chr4_3:40703807-40703826 None:intergenic 25.0%
! TGCAATTAATTAGTAGACAA+AGG - chr4_3:40703866-40703885 None:intergenic 25.0%
! GTCTACTAATTAATTGCAAA+TGG + chr4_3:40703868-40703887 Msa0641030:five_prime_UTR 25.0%
! GGTTAATAATTGTTTCAAAC+AGG - chr4_3:40704041-40704060 None:intergenic 25.0%
! ATTAATCATCTGATTCTTAG+GGG - chr4_3:40704105-40704124 None:intergenic 25.0%
!!! TTTATTTTGCCATGATTTTC+AGG + chr4_3:40704167-40704186 Msa0641030:intron 25.0%
! ATACACATAAACCAAAAAGA+AGG + chr4_3:40704282-40704301 Msa0641030:CDS 25.0%
! AGAATTAATTCTGACAGATA+TGG + chr4_3:40704373-40704392 Msa0641030:CDS 25.0%
!! AATATTGAATCTAGTTCAAG+TGG + chr4_3:40705172-40705191 Msa0641030:CDS 25.0%
! CGGTACATATTTATTAATTG+TGG + chr4_3:40705416-40705435 Msa0641030:intron 25.0%
! TGAAAATATATGTTGAGGAA+AGG + chr4_3:40705684-40705703 Msa0641030:intron 25.0%
! GAAAATATATGTTGAGGAAA+GGG + chr4_3:40705685-40705704 Msa0641030:intron 25.0%
! AATGTCAGAGAGAATAATTT+GGG + chr4_3:40705743-40705762 Msa0641030:intron 25.0%
! ACTCACATAAGAAAGAAATT+TGG - chr4_3:40705927-40705946 None:intergenic 25.0%
! TAAGCACATATGACATATTA+AGG + chr4_3:40705984-40706003 Msa0641030:intron 25.0%
! AAGCACATATGACATATTAA+GGG + chr4_3:40705985-40706004 Msa0641030:intron 25.0%
! ATATGACATATTAAGGGAAA+TGG + chr4_3:40705991-40706010 Msa0641030:intron 25.0%
!!! ATTTTCGTGATTCATTTTTG+AGG + chr4_3:40706292-40706311 Msa0641030:intron 25.0%
!! AATTCATGCAAATCTAAAGT+AGG - chr4_3:40706469-40706488 None:intergenic 25.0%
! TAGTGAGTTTGACAAAATTA+CGG - chr4_3:40706770-40706789 None:intergenic 25.0%
! AATCTCTTCACAAATTAAGA+CGG + chr4_3:40707025-40707044 Msa0641030:CDS 25.0%
!!! TTTTCAAGAATGCAACTTAA+TGG - chr4_3:40707300-40707319 None:intergenic 25.0%
!! TTCTTTTATGAATCAAAAGC+TGG - chr4_3:40707345-40707364 None:intergenic 25.0%
! ATATGATTAATTCAGTTGAG+TGG - chr4_3:40707765-40707784 None:intergenic 25.0%
! TTATTAACTTACGTTGTACA+AGG + chr4_3:40708234-40708253 Msa0641030:intron 25.0%
! TATTAACTTACGTTGTACAA+GGG + chr4_3:40708235-40708254 Msa0641030:intron 25.0%
! CCATCTTTGTATTATTGTAA+TGG - chr4_3:40708271-40708290 None:intergenic 25.0%
! CCATTACAATAATACAAAGA+TGG + chr4_3:40708268-40708287 Msa0641030:intron 25.0%
! TACAATAATACAAAGATGGT+AGG + chr4_3:40708272-40708291 Msa0641030:intron 25.0%
! ACAATAATACAAAGATGGTA+GGG + chr4_3:40708273-40708292 Msa0641030:intron 25.0%
!!! AGAATTTTGTTTCAATCGAA+AGG + chr4_3:40708367-40708386 Msa0641030:intron 25.0%
!!! GAATTTTGTTTCAATCGAAA+GGG + chr4_3:40708368-40708387 Msa0641030:intron 25.0%
! ACATATCAATTCTACAAAAG+TGG - chr4_3:40708449-40708468 None:intergenic 25.0%
!! CAAAATCACAGGATTTTAAA+GGG - chr4_3:40708564-40708583 None:intergenic 25.0%
!! ACAAAATCACAGGATTTTAA+AGG - chr4_3:40708565-40708584 None:intergenic 25.0%
!! TAAAATCCTGTGATTTTGTA+TGG + chr4_3:40708566-40708585 Msa0641030:intron 25.0%
!! AAAATCCTGTGATTTTGTAT+GGG + chr4_3:40708567-40708586 Msa0641030:intron 25.0%
!! TACTAAGATTTTGCCTATTT+TGG + chr4_3:40708611-40708630 Msa0641030:intron 25.0%
!! ACTAAGATTTTGCCTATTTT+GGG + chr4_3:40708612-40708631 Msa0641030:intron 25.0%
!!! TCTCTTTAAGTTTTTAATGC+AGG + chr4_3:40708836-40708855 Msa0641030:intron 25.0%
! TGATGTTGACATTGAATTAT+TGG - chr4_3:40709084-40709103 None:intergenic 25.0%
! TTTCATTTCCACTCAATAAA+GGG - chr4_3:40709298-40709317 None:intergenic 25.0%
!! TTTTCATTTCCACTCAATAA+AGG - chr4_3:40709299-40709318 None:intergenic 25.0%
! TTGATATTGAAAACAGAAAG+AGG + chr4_3:40709590-40709609 Msa0641030:three_prime_UTR 25.0%
! TTATATAATAAGCGTCTGTT+TGG - chr4_3:40709740-40709759 None:intergenic 25.0%
! AATACAAATTACATTCATGC+AGG - chr4_3:40709910-40709929 None:intergenic 25.0%
!! GCATGAATGTAATTTGTATT+TGG + chr4_3:40709910-40709929 Msa0641030:three_prime_UTR 25.0%
!! TTGCTAGCTCTATTATGATT+GGG - chr4_3:40703764-40703783 None:intergenic 30.0%
!! ATTGCTAGCTCTATTATGAT+TGG - chr4_3:40703765-40703784 None:intergenic 30.0%
! AGATTAATGGAACTTTTGGA+GGG - chr4_3:40703803-40703822 None:intergenic 30.0%
! AAGATTAATGGAACTTTTGG+AGG - chr4_3:40703804-40703823 None:intergenic 30.0%
ATGAAAACAAAATCACATGG+TGG + chr4_3:40704217-40704236 Msa0641030:exon 30.0%
!! AAGCTTGTTAATTTGAAGCT+TGG - chr4_3:40704252-40704271 None:intergenic 30.0%
TTAACGTGTAATTTGGATTG+TGG - chr4_3:40704326-40704345 None:intergenic 30.0%
! CACGTTAAAGAATTTTCGTA+CGG + chr4_3:40704338-40704357 Msa0641030:CDS 30.0%
! ATGTTTTGTGTTGGATTTTG+TGG - chr4_3:40704512-40704531 None:intergenic 30.0%
GTAATAACAACAAAGAGAAG+AGG + chr4_3:40705143-40705162 Msa0641030:CDS 30.0%
TATTGAAAGCCCAAAATTTG+TGG - chr4_3:40705334-40705353 None:intergenic 30.0%
TAAAGATTGAGACAATGCAA+AGG + chr4_3:40705616-40705635 Msa0641030:intron 30.0%
GAATGTCAGAGAGAATAATT+TGG + chr4_3:40705742-40705761 Msa0641030:intron 30.0%
! AACATGAAACTGACTCAATT+GGG - chr4_3:40705774-40705793 None:intergenic 30.0%
! AAACATGAAACTGACTCAAT+TGG - chr4_3:40705775-40705794 None:intergenic 30.0%
TCTCACTCTCAATCAATAAT+GGG - chr4_3:40705828-40705847 None:intergenic 30.0%
TTCTCACTCTCAATCAATAA+TGG - chr4_3:40705829-40705848 None:intergenic 30.0%
ATTCATAAACACACTCATGA+TGG + chr4_3:40705899-40705918 Msa0641030:intron 30.0%
TTCATAAACACACTCATGAT+GGG + chr4_3:40705900-40705919 Msa0641030:intron 30.0%
AGATCTAACAATCTTCAAAG+TGG - chr4_3:40706044-40706063 None:intergenic 30.0%
!! TTATTTTACCATGGATTTGC+CGG + chr4_3:40706108-40706127 Msa0641030:intron 30.0%
ATGATATGTATAGCGAAGAA+TGG + chr4_3:40706165-40706184 Msa0641030:intron 30.0%
TGATATGTATAGCGAAGAAT+GGG + chr4_3:40706166-40706185 Msa0641030:intron 30.0%
! ATTTTCATTCGCGATGATTT+CGG - chr4_3:40706195-40706214 None:intergenic 30.0%
CGAATGAAAATATCATGATG+TGG + chr4_3:40706204-40706223 Msa0641030:intron 30.0%
! TTTTGAACCGTTATGTTAAG+AGG - chr4_3:40706341-40706360 None:intergenic 30.0%
! AGTAATAGTGTCATTGTAGA+AGG + chr4_3:40706592-40706611 Msa0641030:intron 30.0%
! AATTTTGTCAAACTCACTAC+AGG + chr4_3:40706771-40706790 Msa0641030:intron 30.0%
!!! ACTCTTGTTTTGAACAATGT+AGG + chr4_3:40706857-40706876 Msa0641030:intron 30.0%
ATATCACACTTTGCATTTGA+TGG - chr4_3:40706908-40706927 None:intergenic 30.0%
!! TTGCTTTGAGATTGTCTTTA+AGG - chr4_3:40706985-40707004 None:intergenic 30.0%
ATAACTCTAGACCTATTGAA+TGG - chr4_3:40707275-40707294 None:intergenic 30.0%
TTATGAATCAAAAGCTGGTT+TGG - chr4_3:40707340-40707359 None:intergenic 30.0%
TGCATGACTTGACAAATAAA+AGG + chr4_3:40707518-40707537 Msa0641030:intron 30.0%
CAACGTAAGTTAATAACAAG+AGG - chr4_3:40708230-40708249 None:intergenic 30.0%
ATTAACTTACGTTGTACAAG+GGG + chr4_3:40708236-40708255 Msa0641030:intron 30.0%
CAATAATACAAAGATGGTAG+GGG + chr4_3:40708274-40708293 Msa0641030:intron 30.0%
AATAATACAAAGATGGTAGG+GGG + chr4_3:40708275-40708294 Msa0641030:intron 30.0%
AAAATCGCAATCAAAATCGA+AGG + chr4_3:40708412-40708431 Msa0641030:intron 30.0%
!! AGGATTTTAAAGGGTTTTGA+AGG - chr4_3:40708555-40708574 None:intergenic 30.0%
TAAAACCCATACAAAATCAC+AGG - chr4_3:40708575-40708594 None:intergenic 30.0%
TGAATAAAGTCTCAAAATCC+TGG + chr4_3:40708664-40708683 Msa0641030:intron 30.0%
! TCTCAAAATCCTGGATTTTA+GGG + chr4_3:40708673-40708692 Msa0641030:intron 30.0%
! CTGATTTTGTATTCTCAAAC+TGG - chr4_3:40708744-40708763 None:intergenic 30.0%
! TTTTAATGCAGGTATCTAAC+TGG + chr4_3:40708847-40708866 Msa0641030:intron 30.0%
AAGTACATTTCTTCAACCAT+TGG - chr4_3:40708903-40708922 None:intergenic 30.0%
AATGGTTGAAGAAATGTACT+TGG + chr4_3:40708902-40708921 Msa0641030:CDS 30.0%
TGATCTATTTGTGTTATCCT+TGG - chr4_3:40708961-40708980 None:intergenic 30.0%
AATGAATACCCTTTATTGAG+TGG + chr4_3:40709287-40709306 Msa0641030:CDS 30.0%
AGTGGAAATGAAAATCATCA+TGG + chr4_3:40709305-40709324 Msa0641030:CDS 30.0%
! GAGAGGATATTTTCATTATG+AGG - chr4_3:40709437-40709456 None:intergenic 30.0%
CTCTCTCAGAATTTACATTT+AGG + chr4_3:40709478-40709497 Msa0641030:CDS 30.0%
TCTCAGAATTTACATTTAGG+AGG + chr4_3:40709481-40709500 Msa0641030:exon 30.0%
CTCAGAATTTACATTTAGGA+GGG + chr4_3:40709482-40709501 Msa0641030:exon 30.0%
!! TAATTTGTTCCTGAATGAGA+AGG - chr4_3:40709562-40709581 None:intergenic 30.0%
TTGAAGTTTCAACAAAATCC+TGG + chr4_3:40709681-40709700 Msa0641030:three_prime_UTR 30.0%
!! TTATAAGACTCAAGTTGAGT+TGG + chr4_3:40709760-40709779 Msa0641030:three_prime_UTR 30.0%
! ATGGTATTGGAAAATTAACC+AGG + chr4_3:40709814-40709833 Msa0641030:three_prime_UTR 30.0%
AGATATGAAAGTGATGTGTA+TGG + chr4_3:40710001-40710020 Msa0641030:three_prime_UTR 30.0%
GATATGAAAGTGATGTGTAT+GGG + chr4_3:40710002-40710021 Msa0641030:three_prime_UTR 30.0%
!! TGCTAGCTCTATTATGATTG+GGG - chr4_3:40703763-40703782 None:intergenic 35.0%
GAAGAAAAAAGTAGCTAGCA+AGG - chr4_3:40703990-40704009 None:intergenic 35.0%
GATTTCAAGCAAGTAAAGTC+CGG - chr4_3:40704062-40704081 None:intergenic 35.0%
GATGTTGATCCTGAAAATCA+TGG - chr4_3:40704179-40704198 None:intergenic 35.0%
GTACGTAGTTTGGATTCATA+AGG - chr4_3:40704475-40704494 None:intergenic 35.0%
! TTATTGTTAGTGGTAGCGTT+GGG - chr4_3:40704548-40704567 None:intergenic 35.0%
! ATTATTGTTAGTGGTAGCGT+TGG - chr4_3:40704549-40704568 None:intergenic 35.0%
AACGCTACCACTAACAATAA+TGG + chr4_3:40704548-40704567 Msa0641030:CDS 35.0%
GAAACTTCATATGGTTGTGT+AGG - chr4_3:40704695-40704714 None:intergenic 35.0%
!! TATGAAAACCAATTTGCTGC+GGG - chr4_3:40704880-40704899 None:intergenic 35.0%
!! CTATGAAAACCAATTTGCTG+CGG - chr4_3:40704881-40704900 None:intergenic 35.0%
!!! ACCATGAACGGTGTTATTTT+TGG + chr4_3:40705025-40705044 Msa0641030:CDS 35.0%
TCTTGATGAAGTTGTGAATG+TGG + chr4_3:40705078-40705097 Msa0641030:CDS 35.0%
TGAAGTTGTGAATGTGGATA+AGG + chr4_3:40705084-40705103 Msa0641030:CDS 35.0%
GAAGTTGTGAATGTGGATAA+GGG + chr4_3:40705085-40705104 Msa0641030:CDS 35.0%
AATCATCAAAGGAGAATCTG+TGG + chr4_3:40705108-40705127 Msa0641030:CDS 35.0%
! ATTGAATCTAGTTCAAGTGG+TGG + chr4_3:40705175-40705194 Msa0641030:CDS 35.0%
TCAGAGAGAATAATTTGGGT+CGG + chr4_3:40705747-40705766 Msa0641030:intron 35.0%
! AATCAATAATGGGGTTCACT+TGG - chr4_3:40705818-40705837 None:intergenic 35.0%
CTCACTCTCAATCAATAATG+GGG - chr4_3:40705827-40705846 None:intergenic 35.0%
GAGAGTGAGAAGAAAAGTAA+AGG + chr4_3:40705838-40705857 Msa0641030:intron 35.0%
TCCATGGTAAAATAAGTGCA+GGG - chr4_3:40706103-40706122 None:intergenic 35.0%
ATCCATGGTAAAATAAGTGC+AGG - chr4_3:40706104-40706123 None:intergenic 35.0%
TAGCAGTCCTCTTAACATAA+CGG + chr4_3:40706331-40706350 Msa0641030:intron 35.0%
! TAGTGTCATTGTAGAAGGAA+TGG + chr4_3:40706597-40706616 Msa0641030:intron 35.0%
CAACACTTTAAGTGCATGAT+CGG - chr4_3:40706798-40706817 None:intergenic 35.0%
!! TGAGATTGTCTTTAAGGCAA+GGG - chr4_3:40706979-40706998 None:intergenic 35.0%
!! TTGAGATTGTCTTTAAGGCA+AGG - chr4_3:40706980-40706999 None:intergenic 35.0%
GTGTTAAGTTAGAAGGTTCT+AGG + chr4_3:40707081-40707100 Msa0641030:CDS 35.0%
GAATGATTCATAGCAATGCT+TGG + chr4_3:40707156-40707175 Msa0641030:CDS 35.0%
! ATAATTGAGGTGTCTGTGTT+TGG + chr4_3:40707796-40707815 Msa0641030:intron 35.0%
TCTTGCAAGCATAACCTTAT+CGG - chr4_3:40708068-40708087 None:intergenic 35.0%
!!! TTCTGTACTTTTAAGGCTGT+TGG + chr4_3:40708128-40708147 Msa0641030:intron 35.0%
ACTACTGAGACATTCTAACA+AGG + chr4_3:40708333-40708352 Msa0641030:intron 35.0%
CTATAGCAGAATCCCAAAAT+AGG - chr4_3:40708627-40708646 None:intergenic 35.0%
CTATAGATTTGAGTCGTTGA+AGG + chr4_3:40708641-40708660 Msa0641030:intron 35.0%
! GTCTCAAAATCCTGGATTTT+AGG + chr4_3:40708672-40708691 Msa0641030:intron 35.0%
!!! CTGGATTTTAGGGTTTAAGT+CGG + chr4_3:40708683-40708702 Msa0641030:intron 35.0%
!!! TGGATTTTAGGGTTTAAGTC+GGG + chr4_3:40708684-40708703 Msa0641030:intron 35.0%
AGAGAGTAAAACACCTCTAA+AGG - chr4_3:40708821-40708840 None:intergenic 35.0%
AATGTACTTGGAAGAAACCA+AGG + chr4_3:40708914-40708933 Msa0641030:CDS 35.0%
TTGAAATCACTGTTGGAGAA+AGG - chr4_3:40709058-40709077 None:intergenic 35.0%
TTGGAACTTGAAATCACTGT+TGG - chr4_3:40709065-40709084 None:intergenic 35.0%
TTCAATGTCAACATCACCAA+TGG + chr4_3:40709088-40709107 Msa0641030:CDS 35.0%
TCAATGTCAACATCACCAAT+GGG + chr4_3:40709089-40709108 Msa0641030:CDS 35.0%
GAAACCAGAATTGGATTGAA+AGG - chr4_3:40709129-40709148 None:intergenic 35.0%
TGAAAGGAAACTACCTTGAT+GGG - chr4_3:40709195-40709214 None:intergenic 35.0%
TTGAAAGGAAACTACCTTGA+TGG - chr4_3:40709196-40709215 None:intergenic 35.0%
TCAAGGTAGTTTCCTTTCAA+TGG + chr4_3:40709196-40709215 Msa0641030:CDS 35.0%
TAGTTTCCTTTCAATGGACA+TGG + chr4_3:40709202-40709221 Msa0641030:CDS 35.0%
TCAATTCCATGTCCATTGAA+AGG - chr4_3:40709211-40709230 None:intergenic 35.0%
GGAAATGAAAATCATCATGG+TGG + chr4_3:40709308-40709327 Msa0641030:CDS 35.0%
AATGAAAATCATCATGGTGG+TGG + chr4_3:40709311-40709330 Msa0641030:CDS 35.0%
TGGTTATGGATCATTCTCAA+TGG + chr4_3:40709331-40709350 Msa0641030:CDS 35.0%
TCTCAATGGAAGATGTTAGA+AGG + chr4_3:40709345-40709364 Msa0641030:CDS 35.0%
TTAGAGAAACACCATTTCCA+TGG - chr4_3:40709403-40709422 None:intergenic 35.0%
AATGGTGTTTCTCTAACTCT+TGG + chr4_3:40709407-40709426 Msa0641030:CDS 35.0%
AAGTTTCAACAAAATCCTGG+TGG + chr4_3:40709684-40709703 Msa0641030:three_prime_UTR 35.0%
!! CAAGTTGAGTTGGATTAAGT+TGG + chr4_3:40709770-40709789 Msa0641030:three_prime_UTR 35.0%
!! GAGTTGGATTAAGTTGGAAA+AGG + chr4_3:40709776-40709795 Msa0641030:three_prime_UTR 35.0%
GGAAAATTAACCAGGTATGT+AGG + chr4_3:40709822-40709841 Msa0641030:three_prime_UTR 35.0%
! GATGTGGTGGAAATCATTAA+AGG + chr4_3:40709943-40709962 Msa0641030:three_prime_UTR 35.0%
AAAGTGATGTGTATGGGATT+TGG + chr4_3:40710008-40710027 Msa0641030:three_prime_UTR 35.0%
TTCCACACGCAAAATTCACT+TGG + chr4_3:40703712-40703731 Msa0641030:five_prime_UTR 40.0%
! TAGCTCTATTATGATTGGGG+TGG - chr4_3:40703760-40703779 None:intergenic 40.0%
!! AATGGAACTTTTGGAGGGTT+TGG - chr4_3:40703798-40703817 None:intergenic 40.0%
AGGAGGGGAAGAAAGATTAA+TGG - chr4_3:40703816-40703835 None:intergenic 40.0%
GATATGGCAACGTACTTTCA+TGG + chr4_3:40704389-40704408 Msa0641030:CDS 40.0%
TCAGAGTAAGGTACGTAGTT+TGG - chr4_3:40704485-40704504 None:intergenic 40.0%
AAACTACGTACCTTACTCTG+AGG + chr4_3:40704484-40704503 Msa0641030:CDS 40.0%
! TTTTGTGGTTCCTCAGAGTA+AGG - chr4_3:40704497-40704516 None:intergenic 40.0%
!! GCGAAAAGCATGTTTTGTGT+TGG - chr4_3:40704521-40704540 None:intergenic 40.0%
GGGAGAACCATTATTGTTAG+TGG - chr4_3:40704558-40704577 None:intergenic 40.0%
!! TGGTGTTGATTGAGTGATGA+AGG - chr4_3:40704614-40704633 None:intergenic 40.0%
GAATAGTAACTCCAAGCAAG+TGG - chr4_3:40704634-40704653 None:intergenic 40.0%
ATTCCACCTTCCAACTTTCA+TGG + chr4_3:40704650-40704669 Msa0641030:CDS 40.0%
TTGGATCCATGAAAGTTGGA+AGG - chr4_3:40704659-40704678 None:intergenic 40.0%
! AGTGTTGGATCCATGAAAGT+TGG - chr4_3:40704663-40704682 None:intergenic 40.0%
! ATATGGTTGTGTAGGAGTGT+CGG - chr4_3:40704687-40704706 None:intergenic 40.0%
TGGAAGGTGGAAACTTCATA+TGG - chr4_3:40704704-40704723 None:intergenic 40.0%
TGATCCCCACATGTTATAGT+GGG - chr4_3:40704762-40704781 None:intergenic 40.0%
GCCAAAAATAACACCGTTCA+TGG - chr4_3:40705029-40705048 None:intergenic 40.0%
GTGGATAAGGGAATCATCAA+AGG + chr4_3:40705097-40705116 Msa0641030:CDS 40.0%
ATCAAAGGAGAATCTGTGGA+AGG + chr4_3:40705112-40705131 Msa0641030:CDS 40.0%
! AGTGGTGGAAGAGAAAACAA+TGG + chr4_3:40705190-40705209 Msa0641030:CDS 40.0%
GTGGAAGAGAAAACAATGGA+GGG + chr4_3:40705194-40705213 Msa0641030:CDS 40.0%
ATTGAGACAATGCAAAGGAC+AGG + chr4_3:40705621-40705640 Msa0641030:intron 40.0%
AGCAAAAAAGCCACTTGATC+TGG + chr4_3:40705718-40705737 Msa0641030:intron 40.0%
CAGAGAGAATAATTTGGGTC+GGG + chr4_3:40705748-40705767 Msa0641030:intron 40.0%
GATCACATACAACAGCTGTA+TGG + chr4_3:40706013-40706032 Msa0641030:intron 40.0%
!!! TCCCTGCACTTATTTTACCA+TGG + chr4_3:40706099-40706118 Msa0641030:intron 40.0%
ATGTTACCATAGATCCACTC+CGG - chr4_3:40706130-40706149 None:intergenic 40.0%
TTATGGGTAGAAAACACGCT+AGG - chr4_3:40706250-40706269 None:intergenic 40.0%
GAACAATGTAGGTAGAGCTA+AGG + chr4_3:40706868-40706887 Msa0641030:intron 40.0%
TCACACTTTGCATTTGATGG+TGG - chr4_3:40706905-40706924 None:intergenic 40.0%
TCATCATTTGAGCAAGCAAC+AGG + chr4_3:40706927-40706946 Msa0641030:CDS 40.0%
TTTGAGCAAGCAACAGGATA+TGG + chr4_3:40706933-40706952 Msa0641030:CDS 40.0%
TTTGGGTGAAGATGATTGCT+TGG + chr4_3:40707058-40707077 Msa0641030:CDS 40.0%
TTGGGTGAAGATGATTGCTT+GGG + chr4_3:40707059-40707078 Msa0641030:CDS 40.0%
TGCTTGGGTGTTAAGTTAGA+AGG + chr4_3:40707074-40707093 Msa0641030:CDS 40.0%
!! AGTTAGAAGGTTCTAGGCTT+AGG + chr4_3:40707087-40707106 Msa0641030:CDS 40.0%
ATAACCTTATCGGAGTCCTT+GGG - chr4_3:40708058-40708077 None:intergenic 40.0%
GTTATGCTTGCAAGACAAAC+TGG + chr4_3:40708073-40708092 Msa0641030:CDS 40.0%
CAAGACAAACTGGACTTACT+AGG + chr4_3:40708083-40708102 Msa0641030:CDS 40.0%
CGACTTAAACCCTAAAATCC+AGG - chr4_3:40708685-40708704 None:intergenic 40.0%
GCTAATTAGCAAGAGGGATA+TGG - chr4_3:40708770-40708789 None:intergenic 40.0%
CAATGATAGAGCTTGAGTCT+TGG + chr4_3:40708795-40708814 Msa0641030:intron 40.0%
ATTATTCTCCTCTTGCTCCT+TGG - chr4_3:40708934-40708953 None:intergenic 40.0%
AGAGGAGAATAATGACTCCA+AGG + chr4_3:40708941-40708960 Msa0641030:CDS 40.0%
! TCACTGTTGGAGAAAGGTTT+TGG - chr4_3:40709052-40709071 None:intergenic 40.0%
TGCAAGATGGAAACCAGAAT+TGG - chr4_3:40709138-40709157 None:intergenic 40.0%
!! AATTCTGGTTTCCATCTTGC+AGG + chr4_3:40709137-40709156 Msa0641030:CDS 40.0%
AGTCCAAAAAACTCCCATCA+AGG + chr4_3:40709179-40709198 Msa0641030:CDS 40.0%
!!! CTACCTTGATGGGAGTTTTT+TGG - chr4_3:40709185-40709204 None:intergenic 40.0%
TTCAACTTCAAACTCTGTGG+TGG - chr4_3:40709249-40709268 None:intergenic 40.0%
CCTTTCAACTTCAAACTCTG+TGG - chr4_3:40709252-40709271 None:intergenic 40.0%
! CCACAGAGTTTGAAGTTGAA+AGG + chr4_3:40709249-40709268 Msa0641030:CDS 40.0%
!! AATCATCATGGTGGTGGTTA+TGG + chr4_3:40709317-40709336 Msa0641030:CDS 40.0%
TTAGTGAGCAATTAGCTCCT+AGG + chr4_3:40709375-40709394 Msa0641030:CDS 40.0%
CTGAGAGAGAAATCCATGTT+GGG - chr4_3:40709467-40709486 None:intergenic 40.0%
TCTGAGAGAGAAATCCATGT+TGG - chr4_3:40709468-40709487 None:intergenic 40.0%
! ATGAGAAGGAGTAGTGTTGA+TGG - chr4_3:40709548-40709567 None:intergenic 40.0%
AACACTACTCCTTCTCATTC+AGG + chr4_3:40709550-40709569 Msa0641030:three_prime_UTR 40.0%
TCATTCAACTCCTACATACC+TGG - chr4_3:40709835-40709854 None:intergenic 40.0%
ATTTGGGTAGTACGTAGATG+TGG + chr4_3:40709927-40709946 Msa0641030:three_prime_UTR 40.0%
! GTCCAAGTGAATTTTGCGTG+TGG - chr4_3:40703717-40703736 None:intergenic 45.0%
AGTAGACAAAGGCAGCTACA+AGG - chr4_3:40703855-40703874 None:intergenic 45.0%
!! CAGTTCTGAAATCCAACCGT+CGG + chr4_3:40704427-40704446 Msa0641030:CDS 45.0%
GTCTGTAAACCTTCTACCGA+CGG - chr4_3:40704446-40704465 None:intergenic 45.0%
TTAAATCCATGAAGCGCGTG+GGG - chr4_3:40704578-40704597 None:intergenic 45.0%
CTTAAATCCATGAAGCGCGT+GGG - chr4_3:40704579-40704598 None:intergenic 45.0%
ACTTAAATCCATGAAGCGCG+TGG - chr4_3:40704580-40704599 None:intergenic 45.0%
CTCAATCAACACCACTTGCT+TGG + chr4_3:40704620-40704639 Msa0641030:CDS 45.0%
GATCCATGAAAGTTGGAAGG+TGG - chr4_3:40704656-40704675 None:intergenic 45.0%
! CTTCCATCCATTTTCCTCCT+CGG + chr4_3:40704718-40704737 Msa0641030:CDS 45.0%
TCGTCCCCACTATAACATGT+GGG + chr4_3:40704754-40704773 Msa0641030:CDS 45.0%
GATCCCCACATGTTATAGTG+GGG - chr4_3:40704761-40704780 None:intergenic 45.0%
CTGATCCCCACATGTTATAG+TGG - chr4_3:40704763-40704782 None:intergenic 45.0%
CACTATAACATGTGGGGATC+AGG + chr4_3:40704761-40704780 Msa0641030:CDS 45.0%
CATAGACCAGTTTATCAGCG+TGG + chr4_3:40704896-40704915 Msa0641030:CDS 45.0%
GACAAACCACGCTGATAAAC+TGG - chr4_3:40704905-40704924 None:intergenic 45.0%
AGATACCTCAATCTCACCAG+AGG - chr4_3:40704966-40704985 None:intergenic 45.0%
! TGGTGAGATTGAGGTATCTC+CGG + chr4_3:40704967-40704986 Msa0641030:CDS 45.0%
AAAGGAGAATCTGTGGAAGG+AGG + chr4_3:40705115-40705134 Msa0641030:CDS 45.0%
GGTGGAAGAGAAAACAATGG+AGG + chr4_3:40705193-40705212 Msa0641030:CDS 45.0%
! GCTTGTTAGCATGCTAGATG+AGG + chr4_3:40705276-40705295 Msa0641030:CDS 45.0%
TGCAAAGGACAGGAATTGAC+AGG + chr4_3:40705631-40705650 Msa0641030:intron 45.0%
CTGACATTCACCAGATCAAG+TGG - chr4_3:40705731-40705750 None:intergenic 45.0%
GAAGGAATGGACAACTCACA+TGG + chr4_3:40706610-40706629 Msa0641030:intron 45.0%
TAAGACGGCTAGCAAGACTT+TGG + chr4_3:40707040-40707059 Msa0641030:CDS 45.0%
AAGACGGCTAGCAAGACTTT+GGG + chr4_3:40707041-40707060 Msa0641030:CDS 45.0%
CTTGCCTGAAAGAGCTGTTT+CGG + chr4_3:40707193-40707212 Msa0641030:CDS 45.0%
AGAACCGAAACAGCTCTTTC+AGG - chr4_3:40707200-40707219 None:intergenic 45.0%
TTATCCCAAGGACTCCGATA+AGG + chr4_3:40708051-40708070 Msa0641030:CDS 45.0%
CATAACCTTATCGGAGTCCT+TGG - chr4_3:40708059-40708078 None:intergenic 45.0%
AACTGGACTTACTAGGAGTC+AGG + chr4_3:40708090-40708109 Msa0641030:CDS 45.0%
GAGCTGGCTAATTAGCAAGA+GGG - chr4_3:40708776-40708795 None:intergenic 45.0%
TGAGCTGGCTAATTAGCAAG+AGG - chr4_3:40708777-40708796 None:intergenic 45.0%
CTCAAGCTCTATCATTGAGC+TGG - chr4_3:40708792-40708811 None:intergenic 45.0%
AGTTCGCTTGTGGAAACCAA+TGG + chr4_3:40708884-40708903 Msa0641030:CDS 45.0%
ATGTCAACATCACCAATGGG+AGG + chr4_3:40709092-40709111 Msa0641030:CDS 45.0%
GGGTCCTTTCAATCCAATTC+TGG + chr4_3:40709122-40709141 Msa0641030:CDS 45.0%
CATCAGATGATCCTGCAAGA+TGG - chr4_3:40709151-40709170 None:intergenic 45.0%
CAGGATCATCTGATGTGCAA+AGG + chr4_3:40709156-40709175 Msa0641030:CDS 45.0%
CAATTAGCTCCTAGGTTCCA+TGG + chr4_3:40709383-40709402 Msa0641030:CDS 45.0%
ACACCATTTCCATGGAACCT+AGG - chr4_3:40709395-40709414 None:intergenic 45.0%
AGGAGGGACGATTGATGAAA+TGG + chr4_3:40709498-40709517 Msa0641030:exon 45.0%
GGAGGGACGATTGATGAAAT+GGG + chr4_3:40709499-40709518 Msa0641030:exon 45.0%
GATTTCGTCAAACTCAGCGT+TGG + chr4_3:40709713-40709732 Msa0641030:three_prime_UTR 45.0%
GACAAAGGCAGCTACAAGGA+TGG - chr4_3:40703851-40703870 None:intergenic 50.0%
GAAATCCAACCGTCGGTAGA+AGG + chr4_3:40704434-40704453 Msa0641030:CDS 50.0%
GTAAACCTTCTACCGACGGT+TGG - chr4_3:40704442-40704461 None:intergenic 50.0%
! ATTGAGTGATGAAGGCGCGT+GGG - chr4_3:40704606-40704625 None:intergenic 50.0%
!! TGTAGGAGTGTCGGTAGTGT+TGG - chr4_3:40704678-40704697 None:intergenic 50.0%
GGAGGAAAATGGATGGAAGG+TGG - chr4_3:40704717-40704736 None:intergenic 50.0%
CGAGGAGGAAAATGGATGGA+AGG - chr4_3:40704720-40704739 None:intergenic 50.0%
TAGCCGAGGAGGAAAATGGA+TGG - chr4_3:40704724-40704743 None:intergenic 50.0%
! CACATGTTATAGTGGGGACG+AGG - chr4_3:40704755-40704774 None:intergenic 50.0%
CTCGTCCCCACTATAACATG+TGG + chr4_3:40704753-40704772 Msa0641030:CDS 50.0%
CGTCCCCACTATAACATGTG+GGG + chr4_3:40704755-40704774 Msa0641030:CDS 50.0%
GTTGCTGTGACAGCGTTATC+AGG - chr4_3:40704797-40704816 None:intergenic 50.0%
! GGTGAGATTGAGGTATCTCC+GGG + chr4_3:40704968-40704987 Msa0641030:CDS 50.0%
GGTGGAGTTTCGACCATGAA+CGG + chr4_3:40705013-40705032 Msa0641030:CDS 50.0%
TTACCATGGATTTGCCGGAG+TGG + chr4_3:40706113-40706132 Msa0641030:intron 50.0%
GATTTGCCGGAGTGGATCTA+TGG + chr4_3:40706121-40706140 Msa0641030:intron 50.0%
TGGGTAGAAAACACGCTAGG+AGG - chr4_3:40706247-40706266 None:intergenic 50.0%
ATCACCAACTCCGACAACAG+CGG + chr4_3:40707117-40707136 Msa0641030:CDS 50.0%
AATGCTTGGAGACCTCAGAG+AGG + chr4_3:40707170-40707189 Msa0641030:CDS 50.0%
CTGTTTCGGTTCTTCGTGCT+TGG + chr4_3:40707207-40707226 Msa0641030:CDS 50.0%
TGTGACCTGCAGTTATCCCA+AGG + chr4_3:40708039-40708058 Msa0641030:intron 50.0%
! GCTTGAGTCTTGGCCTTTAG+AGG + chr4_3:40708805-40708824 Msa0641030:intron 50.0%
TAAACGCCAGAGTTCGCTTG+TGG + chr4_3:40708874-40708893 Msa0641030:CDS 50.0%
TGGTTTCCACAAGCGAACTC+TGG - chr4_3:40708883-40708902 None:intergenic 50.0%
GGAAGAAACCAAGGAGCAAG+AGG + chr4_3:40708923-40708942 Msa0641030:CDS 50.0%
ACATCACCAATGGGAGGAGA+AGG + chr4_3:40709098-40709117 Msa0641030:CDS 50.0%
GCTCCTAGGTTCCATGGAAA+TGG + chr4_3:40709389-40709408 Msa0641030:CDS 50.0%
!! CCATGTTGGGTTGAAGAGAG+AGG - chr4_3:40709454-40709473 None:intergenic 50.0%
CCTCTCTCTTCAACCCAACA+TGG + chr4_3:40709451-40709470 Msa0641030:CDS 50.0%
GACGAAATCATGTTGCCACC+AGG - chr4_3:40709702-40709721 None:intergenic 50.0%
TGGGTAGTACGTAGATGTGG+TGG + chr4_3:40709930-40709949 Msa0641030:three_prime_UTR 50.0%
TCTTTCTTCCCCTCCTCGTG+CGG + chr4_3:40703820-40703839 Msa0641030:five_prime_UTR 55.0%
ATGGAATTCCCGCACGAGGA+GGG - chr4_3:40703832-40703851 None:intergenic 55.0%
AAGGATGGAATTCCCGCACG+AGG - chr4_3:40703836-40703855 None:intergenic 55.0%
! GATTGAGTGATGAAGGCGCG+TGG - chr4_3:40704607-40704626 None:intergenic 55.0%
ACGGTAGCCGAGGAGGAAAA+TGG - chr4_3:40704728-40704747 None:intergenic 55.0%
! ATAGTGGGGACGAGGAGTCA+CGG - chr4_3:40704747-40704766 None:intergenic 55.0%
! ATTTGCTGCGGGCGAAACTC+TGG - chr4_3:40704869-40704888 None:intergenic 55.0%
GAGTTTCGCCCGCAGCAAAT+TGG + chr4_3:40704869-40704888 Msa0641030:CDS 55.0%
CTTCGCAGCAAACGCCTTAC+CGG + chr4_3:40704936-40704955 Msa0641030:CDS 55.0%
GATCCACTCCGGCAAATCCA+TGG - chr4_3:40706119-40706138 None:intergenic 55.0%
TCACCAACTCCGACAACAGC+GGG + chr4_3:40707118-40707137 Msa0641030:CDS 55.0%
CTTTCAGGCAAGCCTCTCTG+AGG - chr4_3:40707185-40707204 None:intergenic 55.0%
GGAGTCCTTGGGATAACTGC+AGG - chr4_3:40708047-40708066 None:intergenic 55.0%
TCACCAATGGGAGGAGAAGG+AGG + chr4_3:40709101-40709120 Msa0641030:CDS 55.0%
CACCAATGGGAGGAGAAGGA+GGG + chr4_3:40709102-40709121 Msa0641030:CDS 55.0%
CTTTCTTCCCCTCCTCGTGC+GGG + chr4_3:40703821-40703840 Msa0641030:five_prime_UTR 60.0%
TGGAATTCCCGCACGAGGAG+GGG - chr4_3:40703831-40703850 None:intergenic 60.0%
GATGGAATTCCCGCACGAGG+AGG - chr4_3:40703833-40703852 None:intergenic 60.0%
GCAGCAAACGCCTTACCGGT+CGG + chr4_3:40704940-40704959 Msa0641030:CDS 60.0%
CAATCTCACCAGAGGCCGAC+CGG - chr4_3:40704958-40704977 None:intergenic 60.0%
GTCGGCCTCTGGTGAGATTG+AGG + chr4_3:40704958-40704977 Msa0641030:CDS 60.0%
GACCCTCCTTCTCCTCCCAT+TGG - chr4_3:40709107-40709126 None:intergenic 60.0%
GGTTCTCCCCACGCGCTTCA+TGG + chr4_3:40704569-40704588 Msa0641030:CDS 65.0%
AGGAGTCACGGTAGCCGAGG+AGG - chr4_3:40704735-40704754 None:intergenic 65.0%
ACGAGGAGTCACGGTAGCCG+AGG - chr4_3:40704738-40704757 None:intergenic 65.0%
TCACCAGAGGCCGACCGGTA+AGG - chr4_3:40704953-40704972 None:intergenic 65.0%
! GAGGTATCTCCGGGTAGCCG+TGG + chr4_3:40704977-40704996 Msa0641030:CDS 65.0%
GTATCTCCGGGTAGCCGTGG+AGG + chr4_3:40704980-40704999 Msa0641030:CDS 65.0%
CACCACCTTCCTCGCCTCCA+CGG - chr4_3:40704997-40705016 None:intergenic 65.0%
GTGCCCGCTGTTGTCGGAGT+TGG - chr4_3:40707124-40707143 None:intergenic 65.0%
GCTGCAGTGCCCGCTGTTGT+CGG - chr4_3:40707130-40707149 None:intergenic 65.0%
! CAGCGGGCACTGCAGCAACT+TGG + chr4_3:40707134-40707153 Msa0641030:CDS 65.0%
ACGCCTTACCGGTCGGCCTC+TGG + chr4_3:40704947-40704966 Msa0641030:CDS 70.0%
TCCTCGCCTCCACGGCTACC+CGG - chr4_3:40704989-40705008 None:intergenic 70.0%
GGTAGCCGTGGAGGCGAGGA+AGG + chr4_3:40704989-40705008 Msa0641030:CDS 70.0%
AGCCGTGGAGGCGAGGAAGG+TGG + chr4_3:40704992-40705011 Msa0641030:CDS 70.0%
CGTGGAGGCGAGGAAGGTGG+TGG + chr4_3:40704995-40705014 Msa0641030:CDS 70.0%
TCCGGGTAGCCGTGGAGGCG+AGG + chr4_3:40704985-40705004 Msa0641030:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 40703706 40710074 40703706 ID=Msa0641030;Name=Msa0641030
chr4_3 mRNA 40703706 40710074 40703706 ID=Msa0641030-mRNA-1;Parent=Msa0641030;Name=Msa0641030-mRNA-1;_AED=0.09;_eAED=0.09;_QI=263|1|1|1|0.75|0.6|5|575|713
chr4_3 exon 40703706 40703924 40703706 ID=Msa0641030-mRNA-1:exon:9172;Parent=Msa0641030-mRNA-1
chr4_3 exon 40704189 40705297 40704189 ID=Msa0641030-mRNA-1:exon:9173;Parent=Msa0641030-mRNA-1
chr4_3 exon 40706879 40707252 40706879 ID=Msa0641030-mRNA-1:exon:9174;Parent=Msa0641030-mRNA-1
chr4_3 exon 40708051 40708111 40708051 ID=Msa0641030-mRNA-1:exon:9175;Parent=Msa0641030-mRNA-1
chr4_3 exon 40708858 40710074 40708858 ID=Msa0641030-mRNA-1:exon:9176;Parent=Msa0641030-mRNA-1
chr4_3 five_prime_UTR 40703706 40703924 40703706 ID=Msa0641030-mRNA-1:five_prime_utr;Parent=Msa0641030-mRNA-1
chr4_3 five_prime_UTR 40704189 40704232 40704189 ID=Msa0641030-mRNA-1:five_prime_utr;Parent=Msa0641030-mRNA-1
chr4_3 CDS 40704233 40705297 40704233 ID=Msa0641030-mRNA-1:cds;Parent=Msa0641030-mRNA-1
chr4_3 CDS 40706879 40707252 40706879 ID=Msa0641030-mRNA-1:cds;Parent=Msa0641030-mRNA-1
chr4_3 CDS 40708051 40708111 40708051 ID=Msa0641030-mRNA-1:cds;Parent=Msa0641030-mRNA-1
chr4_3 CDS 40708858 40709499 40708858 ID=Msa0641030-mRNA-1:cds;Parent=Msa0641030-mRNA-1
chr4_3 three_prime_UTR 40709500 40710074 40709500 ID=Msa0641030-mRNA-1:three_prime_utr;Parent=Msa0641030-mRNA-1
Gene Sequence

>Msa0641030

ATGGTGGATATCAAAACCAAGCTTCAAATTAACAAGCTTATAGATCAAGATACACATAAACCAAAAAGAAGGTTTTCTTTTTTGATTTTTCCACAATCCAAATTACACGTTAAAGAATTTTCGTACGGAGACAAAAAAAGAGAATTAATTCTGACAGATATGGCAACGTACTTTCATGGCAACAGCAACAGCAACAGTTCTGAAATCCAACCGTCGGTAGAAGGTTTACAGACACTTTACCTTATGAATCCAAACTACGTACCTTACTCTGAGGAACCACAAAATCCAACACAAAACATGCTTTTCGCTAATCCCAACGCTACCACTAACAATAATGGTTCTCCCCACGCGCTTCATGGATTTAAGTTTTCCCACGCGCCTTCATCACTCAATCAACACCACTTGCTTGGAGTTACTATTCCACCTTCCAACTTTCATGGATCCAACACTACCGACACTCCTACACAACCATATGAAGTTTCCACCTTCCATCCATTTTCCTCCTCGGCTACCGTGACTCCTCGTCCCCACTATAACATGTGGGGATCAGGTAGCTTTCTACCTGATAACGCTGTCACAGCAACGACAACTGATAGATCAGAATGTTCAGATGTCGTTTCTGTGACAGCATCTCCAGAGTTTCGCCCGCAGCAAATTGGTTTTCATAGACCAGTTTATCAGCGTGGTTTGTCTCTCAGTCTTTCTTCGCAGCAAACGCCTTACCGGTCGGCCTCTGGTGAGATTGAGGTATCTCCGGGTAGCCGTGGAGGCGAGGAAGGTGGTGGAGTTTCGACCATGAACGGTGTTATTTTTGGCTCGAAGTATATGAAAGTAGCACAAGAGCTTCTTGATGAAGTTGTGAATGTGGATAAGGGAATCATCAAAGGAGAATCTGTGGAAGGAGGTAATAGTAATAACAACAAAGAGAAGAGGAAAGCAAATATTGAATCTAGTTCAAGTGGTGGAAGAGAAAACAATGGAGGGAAACAAGTAGCTGAATTAAGCACTGCACAAAGACAAGAACTTCAGATGAAGAAGTCAAAGCTTGTTAGCATGCTAGATGAGGTAGAGCTAAGGTACAGACAATACCACCATCAAATGCAAAGTGTGATATCATCATTTGAGCAAGCAACAGGATATGGAGCATCAAAATCTTACACATCCCTTGCCTTAAAGACAATCTCAAAGCAATTTCGAAGTCTAAAAGATTCAATCTCTTCACAAATTAAGACGGCTAGCAAGACTTTGGGTGAAGATGATTGCTTGGGTGTTAAGTTAGAAGGTTCTAGGCTTAGGTATGTCGATCACCAACTCCGACAACAGCGGGCACTGCAGCAACTTGGAATGATTCATAGCAATGCTTGGAGACCTCAGAGAGGCTTGCCTGAAAGAGCTGTTTCGGTTCTTCGTGCTTGGCTTTTTGAACATTTCTTGCACCCTTATCCCAAGGACTCCGATAAGGTTATGCTTGCAAGACAAACTGGACTTACTAGGAGTCAGGTATCTAACTGGTTTATAAACGCCAGAGTTCGCTTGTGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAACCAAGGAGCAAGAGGAGAATAATGACTCCAAGGATAACACAAATAGATCAAAAGAATTAGGTGCCACAAAACTTGATCAAATTAATAATCTTCATTCAAAAGCAGAAAACTTCAACAACCAAAACCTTTCTCCAACAGTGATTTCAAGTTCCAATAATTCAATGTCAACATCACCAATGGGAGGAGAAGGAGGGTCCTTTCAATCCAATTCTGGTTTCCATCTTGCAGGATCATCTGATGTGCAAAGGAGTCCAAAAAACTCCCATCAAGGTAGTTTCCTTTCAATGGACATGGAATTGAAGTCTAATAGAGAGTCCACCACAGAGTTTGAAGTTGAAAGGCATAATCATGACAAAAATGAATACCCTTTATTGAGTGGAAATGAAAATCATCATGGTGGTGGTTATGGATCATTCTCAATGGAAGATGTTAGAAGGTTTAATGTTAGTGAGCAATTAGCTCCTAGGTTCCATGGAAATGGTGTTTCTCTAACTCTTGGACTACCTCATAATGAAAATATCCTCTCTCTTCAACCCAACATGGATTTCTCTCTCAGAATTTACATTTAG
Protein sequence

>Msa0641030

MVDIKTKLQINKLIDQDTHKPKRRFSFLIFPQSKLHVKEFSYGDKKRELILTDMATYFHGNSNSNSSEIQPSVEGLQTLYLMNPNYVPYSEEPQNPTQNMLFANPNATTNNNGSPHALHGFKFSHAPSSLNQHHLLGVTIPPSNFHGSNTTDTPTQPYEVSTFHPFSSSATVTPRPHYNMWGSGSFLPDNAVTATTTDRSECSDVVSVTASPEFRPQQIGFHRPVYQRGLSLSLSSQQTPYRSASGEIEVSPGSRGGEEGGGVSTMNGVIFGSKYMKVAQELLDEVVNVDKGIIKGESVEGGNSNNNKEKRKANIESSSSGGRENNGGKQVAELSTAQRQELQMKKSKLVSMLDEVELRYRQYHHQMQSVISSFEQATGYGASKSYTSLALKTISKQFRSLKDSISSQIKTASKTLGEDDCLGVKLEGSRLRYVDHQLRQQRALQQLGMIHSNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEENNDSKDNTNRSKELGATKLDQINNLHSKAENFNNQNLSPTVISSSNNSMSTSPMGGEGGSFQSNSGFHLAGSSDVQRSPKNSHQGSFLSMDMELKSNRESTTEFEVERHNHDKNEYPLLSGNENHHGGGYGSFSMEDVRRFNVSEQLAPRFHGNGVSLTLGLPHNENILSLQPNMDFSLRIYI*