AlfalfaGEDB | Msa0641030

M. sativa cultivar zhongmu-4 / Msa0641030

KEGG: -
GO: GO:0000741 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010197 GO:0010201 GO:0010218 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07526.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641030	XP_039689668.1	95.511	646	28	1	54	698	1	646	0.0	1187

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641030	sp\|Q9SJ56\|BLH1_ARATH	44.200	681	273	23	54	700	1	608	1.92e-126	394

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641030	A0A072UKZ2	95.511	646	28	1	54	698	1	646	0.0	1187

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TFs/TRs:

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Gene ID	Type	Classification
Msa0641030	TF	HB-BELL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003030	Msa0641030	-0.821911	3.138350e-53	-8.615850e-47
Msa0006470	Msa0641030	0.811067	8.426354e-51	-8.615850e-47
Msa0011760	Msa0641030	0.865717	4.823662e-65	-8.615850e-47
Msa0014790	Msa0641030	0.863537	2.318878e-64	-8.615850e-47
Msa0015100	Msa0641030	0.803979	2.691809e-49	-8.615850e-47
Msa0017420	Msa0641030	0.819780	9.705563e-53	-8.615850e-47
Msa0021980	Msa0641030	0.874187	8.218339e-68	-8.615850e-47
Msa0025690	Msa0641030	0.833326	5.685816e-56	-8.615850e-47
Msa0026120	Msa0641030	0.827589	1.439595e-54	-8.615850e-47
Msa0026930	Msa0641030	0.811507	6.763809e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641030	MtrunA17_Chr4g0025521	95.511	646	28	1	54	698	1	646	0.0	1187
Msa0641030	MtrunA17_Chr1g0177751	46.345	684	264	25	54	709	1	609	3.05e-152	457
Msa0641030	MtrunA17_Chr7g0267481	45.291	669	266	19	54	692	1	599	1.99e-151	455
Msa0641030	MtrunA17_Chr3g0141941	44.893	421	173	15	143	545	56	435	4.81e-95	304
Msa0641030	MtrunA17_Chr1g0155681	58.052	267	97	4	271	529	172	431	9.40e-95	306
Msa0641030	MtrunA17_Chr8g0373801	50.890	281	131	3	269	543	388	667	6.81e-83	280
Msa0641030	MtrunA17_Chr8g0387321	52.708	277	118	3	269	539	185	454	8.10e-78	261
Msa0641030	MtrunA17_Chr5g0403251	50.000	292	137	5	259	545	329	616	8.76e-78	264
Msa0641030	MtrunA17_Chr3g0141931	45.172	290	141	4	262	543	158	437	1.62e-71	239
Msa0641030	MtrunA17_Chr4g0028701	39.506	324	144	5	269	546	245	562	8.71e-64	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641030	AT2G35940.3	44.200	681	273	23	54	700	1	608	1.95e-127	394
Msa0641030	AT2G35940.1	44.200	681	273	23	54	700	1	608	1.95e-127	394
Msa0641030	AT2G35940.2	44.200	681	273	23	54	700	1	608	1.95e-127	394
Msa0641030	AT2G16400.1	49.077	379	152	10	202	575	57	399	5.21e-97	308
Msa0641030	AT4G34610.2	50.568	352	143	10	228	569	94	424	4.15e-95	305
Msa0641030	AT4G34610.4	50.568	352	143	10	228	569	94	424	4.15e-95	305
Msa0641030	AT4G34610.3	50.568	352	143	10	228	569	94	424	4.15e-95	305
Msa0641030	AT4G34610.1	50.568	352	143	10	228	569	94	424	4.15e-95	305
Msa0641030	AT1G75410.1	52.703	296	99	8	258	535	160	432	7.41e-88	286
Msa0641030	AT1G75410.2	52.703	296	99	8	258	535	160	432	7.41e-88	286

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Find 229 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAAACAAAATCACA+TGG	0.701682	4_3:+40704214	Msa0641030:exon
AAACTACGTACCTTACTCTG+AGG	0.712519	4_3:+40704484	Msa0641030:CDS
AAAGGAGAATCTGTGGAAGG+AGG	0.648166	4_3:+40705115	Msa0641030:CDS
AAAGTGATGTGTATGGGATT+TGG	0.412182	4_3:+40710008	Msa0641030:three_prime_UTR
AAATTCTTTAACGTGTAATT+TGG	0.155568	4_3:-40704330	None:intergenic
AACACTACTCCTTCTCATTC+AGG	0.436567	4_3:+40709550	Msa0641030:three_prime_UTR
AACGCTACCACTAACAATAA+TGG	0.417083	4_3:+40704548	Msa0641030:CDS
AACTGGACTTACTAGGAGTC+AGG	0.495725	4_3:+40708090	Msa0641030:CDS
AAGACGGCTAGCAAGACTTT+GGG	0.467699	4_3:+40707041	Msa0641030:CDS
AAGCTTGTTAATTTGAAGCT+TGG	0.443810	4_3:-40704249	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAAACAAAATCACATGG+TGG	+	chr4_3:40704217-40704236	Msa0641030:exon	30.0%
TTAACGTGTAATTTGGATTG+TGG	-	chr4_3:40704326-40704345	None:intergenic	30.0%
GTAATAACAACAAAGAGAAG+AGG	+	chr4_3:40705143-40705162	Msa0641030:CDS	30.0%
TATTGAAAGCCCAAAATTTG+TGG	-	chr4_3:40705334-40705353	None:intergenic	30.0%
TAAAGATTGAGACAATGCAA+AGG	+	chr4_3:40705616-40705635	Msa0641030:intron	30.0%
GAATGTCAGAGAGAATAATT+TGG	+	chr4_3:40705742-40705761	Msa0641030:intron	30.0%
TCTCACTCTCAATCAATAAT+GGG	-	chr4_3:40705828-40705847	None:intergenic	30.0%
TTCTCACTCTCAATCAATAA+TGG	-	chr4_3:40705829-40705848	None:intergenic	30.0%
ATTCATAAACACACTCATGA+TGG	+	chr4_3:40705899-40705918	Msa0641030:intron	30.0%
TTCATAAACACACTCATGAT+GGG	+	chr4_3:40705900-40705919	Msa0641030:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	40703706	40710074	40703706	ID=Msa0641030;Name=Msa0641030
chr4_3	mRNA	40703706	40710074	40703706	ID=Msa0641030-mRNA-1;Parent=Msa0641030;Name=Msa0641030-mRNA-1;_AED=0.09;_eAED=0.09;_QI=263\|1\|1\|1\|0.75\|0.6\|5\|575\|713
chr4_3	exon	40703706	40703924	40703706	ID=Msa0641030-mRNA-1:exon:9172;Parent=Msa0641030-mRNA-1
chr4_3	exon	40704189	40705297	40704189	ID=Msa0641030-mRNA-1:exon:9173;Parent=Msa0641030-mRNA-1
chr4_3	exon	40706879	40707252	40706879	ID=Msa0641030-mRNA-1:exon:9174;Parent=Msa0641030-mRNA-1
chr4_3	exon	40708051	40708111	40708051	ID=Msa0641030-mRNA-1:exon:9175;Parent=Msa0641030-mRNA-1
chr4_3	exon	40708858	40710074	40708858	ID=Msa0641030-mRNA-1:exon:9176;Parent=Msa0641030-mRNA-1
chr4_3	five_prime_UTR	40703706	40703924	40703706	ID=Msa0641030-mRNA-1:five_prime_utr;Parent=Msa0641030-mRNA-1
chr4_3	five_prime_UTR	40704189	40704232	40704189	ID=Msa0641030-mRNA-1:five_prime_utr;Parent=Msa0641030-mRNA-1
chr4_3	CDS	40704233	40705297	40704233	ID=Msa0641030-mRNA-1:cds;Parent=Msa0641030-mRNA-1
chr4_3	CDS	40706879	40707252	40706879	ID=Msa0641030-mRNA-1:cds;Parent=Msa0641030-mRNA-1
chr4_3	CDS	40708051	40708111	40708051	ID=Msa0641030-mRNA-1:cds;Parent=Msa0641030-mRNA-1
chr4_3	CDS	40708858	40709499	40708858	ID=Msa0641030-mRNA-1:cds;Parent=Msa0641030-mRNA-1
chr4_3	three_prime_UTR	40709500	40710074	40709500	ID=Msa0641030-mRNA-1:three_prime_utr;Parent=Msa0641030-mRNA-1

Gene Sequence

>Msa0641030

ATGGTGGATATCAAAACCAAGCTTCAAATTAACAAGCTTATAGATCAAGATACACATAAACCAAAAAGAAGGTTTTCTTTTTTGATTTTTCCACAATCCAAATTACACGTTAAAGAATTTTCGTACGGAGACAAAAAAAGAGAATTAATTCTGACAGATATGGCAACGTACTTTCATGGCAACAGCAACAGCAACAGTTCTGAAATCCAACCGTCGGTAGAAGGTTTACAGACACTTTACCTTATGAATCCAAACTACGTACCTTACTCTGAGGAACCACAAAATCCAACACAAAACATGCTTTTCGCTAATCCCAACGCTACCACTAACAATAATGGTTCTCCCCACGCGCTTCATGGATTTAAGTTTTCCCACGCGCCTTCATCACTCAATCAACACCACTTGCTTGGAGTTACTATTCCACCTTCCAACTTTCATGGATCCAACACTACCGACACTCCTACACAACCATATGAAGTTTCCACCTTCCATCCATTTTCCTCCTCGGCTACCGTGACTCCTCGTCCCCACTATAACATGTGGGGATCAGGTAGCTTTCTACCTGATAACGCTGTCACAGCAACGACAACTGATAGATCAGAATGTTCAGATGTCGTTTCTGTGACAGCATCTCCAGAGTTTCGCCCGCAGCAAATTGGTTTTCATAGACCAGTTTATCAGCGTGGTTTGTCTCTCAGTCTTTCTTCGCAGCAAACGCCTTACCGGTCGGCCTCTGGTGAGATTGAGGTATCTCCGGGTAGCCGTGGAGGCGAGGAAGGTGGTGGAGTTTCGACCATGAACGGTGTTATTTTTGGCTCGAAGTATATGAAAGTAGCACAAGAGCTTCTTGATGAAGTTGTGAATGTGGATAAGGGAATCATCAAAGGAGAATCTGTGGAAGGAGGTAATAGTAATAACAACAAAGAGAAGAGGAAAGCAAATATTGAATCTAGTTCAAGTGGTGGAAGAGAAAACAATGGAGGGAAACAAGTAGCTGAATTAAGCACTGCACAAAGACAAGAACTTCAGATGAAGAAGTCAAAGCTTGTTAGCATGCTAGATGAGGTAGAGCTAAGGTACAGACAATACCACCATCAAATGCAAAGTGTGATATCATCATTTGAGCAAGCAACAGGATATGGAGCATCAAAATCTTACACATCCCTTGCCTTAAAGACAATCTCAAAGCAATTTCGAAGTCTAAAAGATTCAATCTCTTCACAAATTAAGACGGCTAGCAAGACTTTGGGTGAAGATGATTGCTTGGGTGTTAAGTTAGAAGGTTCTAGGCTTAGGTATGTCGATCACCAACTCCGACAACAGCGGGCACTGCAGCAACTTGGAATGATTCATAGCAATGCTTGGAGACCTCAGAGAGGCTTGCCTGAAAGAGCTGTTTCGGTTCTTCGTGCTTGGCTTTTTGAACATTTCTTGCACCCTTATCCCAAGGACTCCGATAAGGTTATGCTTGCAAGACAAACTGGACTTACTAGGAGTCAGGTATCTAACTGGTTTATAAACGCCAGAGTTCGCTTGTGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAACCAAGGAGCAAGAGGAGAATAATGACTCCAAGGATAACACAAATAGATCAAAAGAATTAGGTGCCACAAAACTTGATCAAATTAATAATCTTCATTCAAAAGCAGAAAACTTCAACAACCAAAACCTTTCTCCAACAGTGATTTCAAGTTCCAATAATTCAATGTCAACATCACCAATGGGAGGAGAAGGAGGGTCCTTTCAATCCAATTCTGGTTTCCATCTTGCAGGATCATCTGATGTGCAAAGGAGTCCAAAAAACTCCCATCAAGGTAGTTTCCTTTCAATGGACATGGAATTGAAGTCTAATAGAGAGTCCACCACAGAGTTTGAAGTTGAAAGGCATAATCATGACAAAAATGAATACCCTTTATTGAGTGGAAATGAAAATCATCATGGTGGTGGTTATGGATCATTCTCAATGGAAGATGTTAGAAGGTTTAATGTTAGTGAGCAATTAGCTCCTAGGTTCCATGGAAATGGTGTTTCTCTAACTCTTGGACTACCTCATAATGAAAATATCCTCTCTCTTCAACCCAACATGGATTTCTCTCTCAGAATTTACATTTAG

Protein sequence

>Msa0641030

MVDIKTKLQINKLIDQDTHKPKRRFSFLIFPQSKLHVKEFSYGDKKRELILTDMATYFHGNSNSNSSEIQPSVEGLQTLYLMNPNYVPYSEEPQNPTQNMLFANPNATTNNNGSPHALHGFKFSHAPSSLNQHHLLGVTIPPSNFHGSNTTDTPTQPYEVSTFHPFSSSATVTPRPHYNMWGSGSFLPDNAVTATTTDRSECSDVVSVTASPEFRPQQIGFHRPVYQRGLSLSLSSQQTPYRSASGEIEVSPGSRGGEEGGGVSTMNGVIFGSKYMKVAQELLDEVVNVDKGIIKGESVEGGNSNNNKEKRKANIESSSSGGRENNGGKQVAELSTAQRQELQMKKSKLVSMLDEVELRYRQYHHQMQSVISSFEQATGYGASKSYTSLALKTISKQFRSLKDSISSQIKTASKTLGEDDCLGVKLEGSRLRYVDHQLRQQRALQQLGMIHSNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEENNDSKDNTNRSKELGATKLDQINNLHSKAENFNNQNLSPTVISSSNNSMSTSPMGGEGGSFQSNSGFHLAGSSDVQRSPKNSHQGSFLSMDMELKSNRESTTEFEVERHNHDKNEYPLLSGNENHHGGGYGSFSMEDVRRFNVSEQLAPRFHGNGVSLTLGLPHNENILSLQPNMDFSLRIYI*