AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0052460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052460 MtrunA17_Chr1g0152981 97.196 321 9 0 1 321 1 321 0.0 658
Msa0052460 MtrunA17_Chr5g0413871 44.358 257 114 7 11 244 13 263 3.56e-69 219
Msa0052460 MtrunA17_Chr2g0317011 39.594 197 93 7 12 203 20 195 3.36e-32 124
Msa0052460 MtrunA17_Chr7g0239641 37.037 108 60 3 97 202 82 183 2.46e-15 76.6
Msa0052460 MtrunA17_Chr1g0184231 27.919 197 79 8 12 194 5 152 2.60e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0052460 AT1G60060.1 48.113 212 86 5 11 204 13 218 3.44e-66 213
Msa0052460 AT1G60060.2 45.714 175 75 4 48 204 6 178 1.59e-48 166
Msa0052460 AT3G15240.2 38.265 196 102 6 12 203 34 214 8.44e-33 125
Msa0052460 AT5G53900.2 38.000 200 99 7 12 203 21 203 3.97e-31 120
Msa0052460 AT1G06150.1 29.843 191 93 6 12 197 5 159 1.26e-15 78.2
Msa0052460 AT1G06150.2 29.843 191 93 6 12 197 5 159 1.30e-15 78.2
Msa0052460 AT2G31280.1 31.250 192 92 8 8 198 1 153 3.48e-15 76.6
Msa0052460 AT2G31280.3 31.250 192 92 8 8 198 1 153 4.50e-15 76.3
Msa0052460 AT5G53900.3 44.186 86 47 1 112 197 1 85 9.30e-15 73.6
Msa0052460 AT5G53900.1 44.186 86 47 1 112 197 1 85 9.30e-15 73.6

Find 93 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATTTAAACCTAAGTTTA+TGG 0.157867 1_2:-6724387 None:intergenic
GTGTTATTTGTTTAGGAATT+AGG 0.179358 1_2:-6724585 None:intergenic
ACATTTCATATTGCTAATTA+TGG 0.183731 1_2:+6724536 Msa0052460:CDS
TACAATAGTGTTCAACATTT+TGG 0.189842 1_2:+6722017 Msa0052460:five_prime_UTR
CCTCTTCAATCTTCACTTTG+TGG 0.264703 1_2:-6724511 None:intergenic
ATCTTGCATGTTATTAAGTT+TGG 0.269651 1_2:-6724336 None:intergenic
TGTTGTTTAAGGTGGGAATT+TGG 0.274976 1_2:+6722357 Msa0052460:intron
TCAGTTAAATTCAGGCATTC+AGG 0.281549 1_2:+6723274 Msa0052460:CDS
ACAACTAGTGTTATTTGTTT+AGG 0.284914 1_2:-6724592 None:intergenic
TGTTGAACACTATTGTAAAA+TGG 0.307117 1_2:-6722011 None:intergenic
GCTAATTATGGAGATCAAAA+AGG 0.316814 1_2:+6724548 Msa0052460:CDS
CCAAGGGAAATAAAAGAAAT+TGG 0.316828 1_2:+6722400 Msa0052460:CDS
GTTTATAGTGACACTCAAAA+TGG 0.326390 1_2:+6722872 Msa0052460:CDS
TCTCATGAGGTTTATAGTTA+TGG 0.339420 1_2:+6722672 Msa0052460:CDS
GGATGCTTGAATGAAAGATT+TGG 0.362727 1_2:+6722627 Msa0052460:CDS
TGTTTGTTAGGATTATTGTA+TGG 0.365430 1_2:+6722559 Msa0052460:intron
ACCTAAGTTTATGGCTATCA+TGG 0.369497 1_2:-6724378 None:intergenic
CATCATTTGGAAATTTGGTT+TGG 0.377261 1_2:-6724282 None:intergenic
CAAACCAAATTTCCAAATGA+TGG 0.379754 1_2:+6724283 Msa0052460:CDS
GTACCCCACTCACTCCATTA+TGG 0.380599 1_2:-6721989 None:intergenic
TGGGAGTTTCAGTTAAATTC+AGG 0.382777 1_2:+6723266 Msa0052460:CDS
GGGAAAGTTGCAGCAGATAA+TGG 0.383947 1_2:+6722839 Msa0052460:CDS
TGAAGTTGAATGTGATTGTT+AGG 0.384096 1_2:-6724461 None:intergenic
TGTTATTAAGTTTGGTTACA+TGG 0.402972 1_2:-6724328 None:intergenic
ATAAATATTATGCAGATTAG+TGG 0.407993 1_2:+6722817 Msa0052460:intron
CCTCTTCAACTTCTTCCAAA+TGG 0.409092 1_2:+6722164 Msa0052460:CDS
CTTTGAAATGAAAGTAATCC+TGG 0.413784 1_2:-6724224 None:intergenic
AAAGTAATCCTGGCATGGTT+TGG 0.415252 1_2:-6724214 None:intergenic
AGGATTATTGTATGGGAAGA+TGG 0.415442 1_2:+6722567 Msa0052460:intron
CAGCAGATAATGGTCACAAA+TGG 0.418083 1_2:+6722849 Msa0052460:CDS
CTCTTCAACTTCTTCCAAAT+GGG 0.420849 1_2:+6722165 Msa0052460:CDS
TAAATATTATGCAGATTAGT+GGG 0.421333 1_2:+6722818 Msa0052460:intron
AAAAGAGTGGGGAGAGTGTT+GGG 0.426679 1_2:-6722064 None:intergenic
AACTGAAACTCCCATGCCCT+TGG 0.450146 1_2:-6723257 None:intergenic
GCTGTCATTGCTGTCAAAGA+AGG 0.450482 1_2:+6723444 Msa0052460:CDS
GTAATGCATGGATGTTGAAA+TGG 0.457555 1_2:-6724260 None:intergenic
AGCTACCTCCAAACCATGCC+AGG 0.471115 1_2:+6724206 Msa0052460:CDS
TACAACCATAATGGAGTGAG+TGG 0.475355 1_2:+6721984 Msa0052460:five_prime_UTR
GGCTATCATGGAGAAATAGT+TGG 0.477446 1_2:-6724366 None:intergenic
GAAAACAGCATAGACCCATT+TGG 0.478391 1_2:-6722179 None:intergenic
ATTTAACATTAATGAACAAA+AGG 0.480526 1_2:-6724769 None:intergenic
AGCAGATAATGGTCACAAAT+GGG 0.486308 1_2:+6722850 Msa0052460:CDS
GAATGTGAGCAAAGGAAGAA+TGG 0.490985 1_2:+6722606 Msa0052460:CDS
TTTGACAGCAACCAAGGGCA+TGG 0.491667 1_2:+6723246 Msa0052460:intron
ATTAGGCCACCACAATGGTA+TGG 0.496095 1_2:+6724681 Msa0052460:three_prime_UTR
GGCATTGATGTTCCATTCTG+TGG 0.500646 1_2:-6724410 None:intergenic
TTTATAGTGACACTCAAAAT+GGG 0.504799 1_2:+6722873 Msa0052460:CDS
GTTTGTTAGGATTATTGTAT+GGG 0.510760 1_2:+6722560 Msa0052460:intron
GGTTTAAATCATCCACAGAA+TGG 0.513835 1_2:+6724398 Msa0052460:CDS
TCCATGATAGCCATAAACTT+AGG 0.517062 1_2:+6724377 Msa0052460:CDS
GACTTCTCTTGATCGTTCCA+AGG 0.518829 1_2:+6722383 Msa0052460:CDS
AGTATAATGATCACATTTGA+AGG 0.520545 1_2:-6722041 None:intergenic
TTGACAGCAACCAAGGGCAT+GGG 0.522018 1_2:+6723247 Msa0052460:intron
GAGGTTTATAGTTATGGAGA+AGG 0.523360 1_2:+6722678 Msa0052460:CDS
GAACATCAATGCCACCACTT+TGG 0.530008 1_2:+6724420 Msa0052460:CDS
TTAGGCCACCACAATGGTAT+GGG 0.530375 1_2:+6724682 Msa0052460:three_prime_UTR
GTAATCCTGGCATGGTTTGG+AGG 0.532606 1_2:-6724211 None:intergenic
TGTTTAAGGTGGGAATTTGG+AGG 0.535611 1_2:+6722360 Msa0052460:intron
AAATGAAAGTAATCCTGGCA+TGG 0.539286 1_2:-6724219 None:intergenic
GTTTAAGGTGGGAATTTGGA+GGG 0.541664 1_2:+6722361 Msa0052460:intron
AATTATAATTATGAGAGAGA+TGG 0.544464 1_2:+6724638 Msa0052460:three_prime_UTR
AGGTTTATAGTTATGGAGAA+GGG 0.550052 1_2:+6722679 Msa0052460:CDS
AAAGAAGGCTTAGTACAACT+TGG 0.558403 1_2:+6723459 Msa0052460:CDS
CCATTTGGAAGAAGTTGAAG+AGG 0.562010 1_2:-6722164 None:intergenic
AAATTTGGTTTGGTAATGCA+TGG 0.564278 1_2:-6724272 None:intergenic
TTGGAAGAAGTTGAAGAGGT+AGG 0.566819 1_2:-6722160 None:intergenic
ATTCTTCAAAATGTCTCATG+AGG 0.574625 1_2:+6722659 Msa0052460:CDS
TGATCAATTGAAGCATTCCA+TGG 0.576323 1_2:-6722917 None:intergenic
ATGCTAACTATGTTGGTCCA+TGG 0.581522 1_2:+6722900 Msa0052460:CDS
ACTTCTCTTGATCGTTCCAA+GGG 0.587449 1_2:+6722384 Msa0052460:CDS
CACAAAGTGAAGATTGAAGA+GGG 0.588802 1_2:+6724512 Msa0052460:CDS
TGTTGAAATGGTATGTGTTG+TGG 0.592823 1_2:-6724248 None:intergenic
ATTTAGTGCTCAACATACAA+AGG 0.592918 1_2:+6724177 Msa0052460:CDS
TGATTGTTAGGCAAAGAAAG+TGG 0.598592 1_2:-6724449 None:intergenic
ACAACTTGGTTCATTTAACA+AGG 0.613113 1_2:+6723473 Msa0052460:CDS
TGCAAGAGAGAATGAAGCAA+GGG 0.620819 1_2:-6722109 None:intergenic
TTCAACTTCATGAAACAAGT+AGG 0.623645 1_2:+6724474 Msa0052460:CDS
AAATATTATGCAGATTAGTG+GGG 0.628220 1_2:+6722819 Msa0052460:intron
GGCCACCACAATGGTATGGG+TGG 0.628616 1_2:+6724685 Msa0052460:three_prime_UTR
GGGTGTGATGCTAACTATGT+TGG 0.633314 1_2:+6722893 Msa0052460:CDS
CCACAAAGTGAAGATTGAAG+AGG 0.636709 1_2:+6724511 Msa0052460:CDS
TTGCAAGAGAGAATGAAGCA+AGG 0.644935 1_2:-6722110 None:intergenic
CAACCATAATGGAGTGAGTG+GGG 0.651877 1_2:+6721986 Msa0052460:five_prime_UTR
ACAACCATAATGGAGTGAGT+GGG 0.662506 1_2:+6721985 Msa0052460:five_prime_UTR
GAAAGTGGAGGTGACCAAAG+TGG 0.664958 1_2:-6724434 None:intergenic
AGTGGAGGTGACCAAAGTGG+TGG 0.667830 1_2:-6724431 None:intergenic
TGCCACCCATACCATTGTGG+TGG 0.687268 1_2:-6724687 None:intergenic
CACGTATCTTTCCTCCACCA+AGG 0.689055 1_2:+6722215 Msa0052460:CDS
TTGTTAGGCAAAGAAAGTGG+AGG 0.694470 1_2:-6724446 None:intergenic
ATGTGCCACCCATACCATTG+TGG 0.698050 1_2:-6724690 None:intergenic
CTGGGATTAGGCCACCACAA+TGG 0.700123 1_2:+6724676 Msa0052460:three_prime_UTR
CTTGGTGGAGGAAAGATACG+TGG 0.715762 1_2:-6722214 None:intergenic
TTGTGGTGGCCTAATCCCAG+TGG 0.727420 1_2:-6724673 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTTTTTTTTATAGTAT+AGG + chr1_2:6722291-6722310 Msa0052460:intron 10.0%
!!! AAAATTACAAAAACATTTTA+AGG - chr1_2:6723734-6723753 None:intergenic 10.0%
!!! TAATATTTAGTATTTTACCT+TGG - chr1_2:6722235-6722254 None:intergenic 15.0%
!!! AAATCTTATTTTCTTAAACA+TGG - chr1_2:6722744-6722763 None:intergenic 15.0%
!!! ATCAAATTACTATTCATTTT+TGG + chr1_2:6723412-6723431 Msa0052460:intron 15.0%
!!! TGTTTTTTAATTGTTACATA+AGG - chr1_2:6723883-6723902 None:intergenic 15.0%
!! ACTAATGAAATATACATTTA+AGG - chr1_2:6723934-6723953 None:intergenic 15.0%
!! ATTTAACATTAATGAACAAA+AGG - chr1_2:6724772-6724791 None:intergenic 15.0%
!!! AATTGGTAAGTTTTATTTCA+TGG + chr1_2:6722417-6722436 Msa0052460:intron 20.0%
!!! AGATTTTACTATCTTTTTAG+TGG + chr1_2:6722758-6722777 Msa0052460:intron 20.0%
!!! GATTTTACTATCTTTTTAGT+GGG + chr1_2:6722759-6722778 Msa0052460:intron 20.0%
!! ATAAATATTATGCAGATTAG+TGG + chr1_2:6722817-6722836 Msa0052460:intron 20.0%
!! TAAATATTATGCAGATTAGT+GGG + chr1_2:6722818-6722837 Msa0052460:intron 20.0%
!! CATAATTTACAAAGAAAATG+AGG - chr1_2:6723171-6723190 None:intergenic 20.0%
!!! CTCATTTTCTTTGTAAATTA+TGG + chr1_2:6723169-6723188 Msa0052460:intron 20.0%
!! CTATTTCAATGTTAACTTAT+GGG - chr1_2:6723199-6723218 None:intergenic 20.0%
!! ACTATTTCAATGTTAACTTA+TGG - chr1_2:6723200-6723219 None:intergenic 20.0%
!!! ATAGTAATTTGATAGCATTA+TGG - chr1_2:6723405-6723424 None:intergenic 20.0%
!!! ACGATTTTTTCGAAATATTT+AGG - chr1_2:6723831-6723850 None:intergenic 20.0%
!!! ATCTTTAGTCTGTAATTTTA+TGG - chr1_2:6723998-6724017 None:intergenic 20.0%
!! ATGATTTAAACCTAAGTTTA+TGG - chr1_2:6724390-6724409 None:intergenic 20.0%
!! ACATTTCATATTGCTAATTA+TGG + chr1_2:6724536-6724555 Msa0052460:CDS 20.0%
!! AATTATAATTATGAGAGAGA+TGG + chr1_2:6724638-6724657 Msa0052460:three_prime_UTR 20.0%
! TGTTGAACACTATTGTAAAA+TGG - chr1_2:6722014-6722033 None:intergenic 25.0%
!! TACAATAGTGTTCAACATTT+TGG + chr1_2:6722017-6722036 Msa0052460:five_prime_UTR 25.0%
! AGTATAATGATCACATTTGA+AGG - chr1_2:6722044-6722063 None:intergenic 25.0%
!! TATTTAGTATTTTACCTTGG+TGG - chr1_2:6722232-6722251 None:intergenic 25.0%
!!! AATAACACGTTTTGTTTGTT+AGG + chr1_2:6722547-6722566 Msa0052460:intron 25.0%
!! TGTTTGTTAGGATTATTGTA+TGG + chr1_2:6722559-6722578 Msa0052460:intron 25.0%
!! GTTTGTTAGGATTATTGTAT+GGG + chr1_2:6722560-6722579 Msa0052460:intron 25.0%
!!! ATTTTAATGAATGTGAGCAA+AGG + chr1_2:6722598-6722617 Msa0052460:CDS 25.0%
! AAATATTATGCAGATTAGTG+GGG + chr1_2:6722819-6722838 Msa0052460:intron 25.0%
! TTTATAGTGACACTCAAAAT+GGG + chr1_2:6722873-6722892 Msa0052460:CDS 25.0%
!! AACATTTAGAATTTGCACAA+AGG - chr1_2:6723002-6723021 None:intergenic 25.0%
! ACACAAAAGTTGTCAAAAAA+TGG - chr1_2:6723083-6723102 None:intergenic 25.0%
!! TCTGTCTTTTATTAGTTAGT+TGG + chr1_2:6723649-6723668 Msa0052460:intron 25.0%
!! TTTCGAAAAAATCGTCATTT+TGG + chr1_2:6723836-6723855 Msa0052460:intron 25.0%
!!! ATTTTGGTCTCTAAATATGT+GGG - chr1_2:6724078-6724097 None:intergenic 25.0%
!! TTTTCCATCATTTGGAAATT+TGG - chr1_2:6724290-6724309 None:intergenic 25.0%
! TGTTATTAAGTTTGGTTACA+TGG - chr1_2:6724331-6724350 None:intergenic 25.0%
! ATCTTGCATGTTATTAAGTT+TGG - chr1_2:6724339-6724358 None:intergenic 25.0%
!!! GTGTTATTTGTTTAGGAATT+AGG - chr1_2:6724588-6724607 None:intergenic 25.0%
!!! ACAACTAGTGTTATTTGTTT+AGG - chr1_2:6724595-6724614 None:intergenic 25.0%
!! CTAATGTGCTTTGTTGTTTA+AGG + chr1_2:6722346-6722365 Msa0052460:intron 30.0%
!! CCAATTTCTTTTATTTCCCT+TGG - chr1_2:6722403-6722422 None:intergenic 30.0%
CCAAGGGAAATAAAAGAAAT+TGG + chr1_2:6722400-6722419 Msa0052460:CDS 30.0%
ATTCTTCAAAATGTCTCATG+AGG + chr1_2:6722659-6722678 Msa0052460:CDS 30.0%
TCTCATGAGGTTTATAGTTA+TGG + chr1_2:6722672-6722691 Msa0052460:CDS 30.0%
AGGTTTATAGTTATGGAGAA+GGG + chr1_2:6722679-6722698 Msa0052460:CDS 30.0%
GTTTATAGTGACACTCAAAA+TGG + chr1_2:6722872-6722891 Msa0052460:CDS 30.0%
ATGCTTCAATTGATCATGTA+AGG + chr1_2:6722924-6722943 Msa0052460:intron 30.0%
TGCTTCAATTGATCATGTAA+GGG + chr1_2:6722925-6722944 Msa0052460:intron 30.0%
! ATTTAGAATTTGCACAAAGG+AGG - chr1_2:6722999-6723018 None:intergenic 30.0%
!! TTAAATTTTGACAGCAACCA+AGG + chr1_2:6723240-6723259 Msa0052460:intron 30.0%
!! TAAATTTTGACAGCAACCAA+GGG + chr1_2:6723241-6723260 Msa0052460:intron 30.0%
ACAACTTGGTTCATTTAACA+AGG + chr1_2:6723473-6723492 Msa0052460:CDS 30.0%
!! GCTCATATTTTGAAGGAAAA+AGG - chr1_2:6723506-6723525 None:intergenic 30.0%
! ATATGAGCACAGAACAATTT+TGG + chr1_2:6723518-6723537 Msa0052460:intron 30.0%
!! TTTTGGTCTTTAAATATGCG+CGG + chr1_2:6723535-6723554 Msa0052460:intron 30.0%
TTTGATACGTGTAGAATTCA+AGG + chr1_2:6723751-6723770 Msa0052460:intron 30.0%
TTGATACGTGTAGAATTCAA+GGG + chr1_2:6723752-6723771 Msa0052460:intron 30.0%
TTGCAAGTTTAATACATTCG+TGG + chr1_2:6724036-6724055 Msa0052460:intron 30.0%
!! GATTTTGGTCTCTAAATATG+TGG - chr1_2:6724079-6724098 None:intergenic 30.0%
! ATTTGAGTAGATCGTGATTT+TGG - chr1_2:6724094-6724113 None:intergenic 30.0%
ATTTAGTGCTCAACATACAA+AGG + chr1_2:6724177-6724196 Msa0052460:CDS 30.0%
!! CTTTGAAATGAAAGTAATCC+TGG - chr1_2:6724227-6724246 None:intergenic 30.0%
!! AAATTTGGTTTGGTAATGCA+TGG - chr1_2:6724275-6724294 None:intergenic 30.0%
CATCATTTGGAAATTTGGTT+TGG - chr1_2:6724285-6724304 None:intergenic 30.0%
CAAACCAAATTTCCAAATGA+TGG + chr1_2:6724283-6724302 Msa0052460:CDS 30.0%
! CTTCATTGTTTTCCATCATT+TGG - chr1_2:6724298-6724317 None:intergenic 30.0%
TGAAGTTGAATGTGATTGTT+AGG - chr1_2:6724464-6724483 None:intergenic 30.0%
TTCAACTTCATGAAACAAGT+AGG + chr1_2:6724474-6724493 Msa0052460:CDS 30.0%
GCTAATTATGGAGATCAAAA+AGG + chr1_2:6724548-6724567 Msa0052460:CDS 30.0%
TTATGGAGATCAAAAAGGAA+AGG + chr1_2:6724553-6724572 Msa0052460:CDS 30.0%
TCCATTGTGCAAAAAAGAGT+GGG - chr1_2:6722079-6722098 None:intergenic 35.0%
TTCCATTGTGCAAAAAAGAG+TGG - chr1_2:6722080-6722099 None:intergenic 35.0%
!!! CTTTTTTGCACAATGGAAAG+TGG + chr1_2:6722082-6722101 Msa0052460:exon 35.0%
CTCTTCAACTTCTTCCAAAT+GGG + chr1_2:6722165-6722184 Msa0052460:CDS 35.0%
! TTAGTATTTTACCTTGGTGG+AGG - chr1_2:6722229-6722248 None:intergenic 35.0%
!! ATGTGCTTTGTTGTTTAAGG+TGG + chr1_2:6722349-6722368 Msa0052460:intron 35.0%
!! TGTGCTTTGTTGTTTAAGGT+GGG + chr1_2:6722350-6722369 Msa0052460:intron 35.0%
! TGTTGTTTAAGGTGGGAATT+TGG + chr1_2:6722357-6722376 Msa0052460:intron 35.0%
AGGATTATTGTATGGGAAGA+TGG + chr1_2:6722567-6722586 Msa0052460:intron 35.0%
GGATGCTTGAATGAAAGATT+TGG + chr1_2:6722627-6722646 Msa0052460:CDS 35.0%
GAGGTTTATAGTTATGGAGA+AGG + chr1_2:6722678-6722697 Msa0052460:CDS 35.0%
! AAACATGGCAAGAAAGTGTA+AGG - chr1_2:6722729-6722748 None:intergenic 35.0%
! AGCAGATAATGGTCACAAAT+GGG + chr1_2:6722850-6722869 Msa0052460:CDS 35.0%
! TGATCAATTGAAGCATTCCA+TGG - chr1_2:6722920-6722939 None:intergenic 35.0%
TGGGAGTTTCAGTTAAATTC+AGG + chr1_2:6723266-6723285 Msa0052460:CDS 35.0%
TCAGTTAAATTCAGGCATTC+AGG + chr1_2:6723274-6723293 Msa0052460:CDS 35.0%
AAAGAAGGCTTAGTACAACT+TGG + chr1_2:6723459-6723478 Msa0052460:CDS 35.0%
!! GTTCTGTGCTCATATTTTGA+AGG - chr1_2:6723513-6723532 None:intergenic 35.0%
AAATGAAAGTAATCCTGGCA+TGG - chr1_2:6724222-6724241 None:intergenic 35.0%
TGTTGAAATGGTATGTGTTG+TGG - chr1_2:6724251-6724270 None:intergenic 35.0%
GTAATGCATGGATGTTGAAA+TGG - chr1_2:6724263-6724282 None:intergenic 35.0%
TCCATGATAGCCATAAACTT+AGG + chr1_2:6724377-6724396 Msa0052460:CDS 35.0%
ACCTAAGTTTATGGCTATCA+TGG - chr1_2:6724381-6724400 None:intergenic 35.0%
GGTTTAAATCATCCACAGAA+TGG + chr1_2:6724398-6724417 Msa0052460:CDS 35.0%
TGATTGTTAGGCAAAGAAAG+TGG - chr1_2:6724452-6724471 None:intergenic 35.0%
CACAAAGTGAAGATTGAAGA+GGG + chr1_2:6724512-6724531 Msa0052460:CDS 35.0%
! ATGGTTGTATTTTGTACCAC+TGG + chr1_2:6724657-6724676 Msa0052460:three_prime_UTR 35.0%
! TGGTTGTATTTTGTACCACT+GGG + chr1_2:6724658-6724677 Msa0052460:three_prime_UTR 35.0%
! TATTTTGTACCACTGGGATT+AGG + chr1_2:6724664-6724683 Msa0052460:three_prime_UTR 35.0%
! TACAACCATAATGGAGTGAG+TGG + chr1_2:6721984-6722003 Msa0052460:five_prime_UTR 40.0%
! ACAACCATAATGGAGTGAGT+GGG + chr1_2:6721985-6722004 Msa0052460:five_prime_UTR 40.0%
CCATTGTGCAAAAAAGAGTG+GGG - chr1_2:6722078-6722097 None:intergenic 40.0%
TGCAAGAGAGAATGAAGCAA+GGG - chr1_2:6722112-6722131 None:intergenic 40.0%
TTGCAAGAGAGAATGAAGCA+AGG - chr1_2:6722113-6722132 None:intergenic 40.0%
TTGGAAGAAGTTGAAGAGGT+AGG - chr1_2:6722163-6722182 None:intergenic 40.0%
CCATTTGGAAGAAGTTGAAG+AGG - chr1_2:6722167-6722186 None:intergenic 40.0%
CCTCTTCAACTTCTTCCAAA+TGG + chr1_2:6722164-6722183 Msa0052460:CDS 40.0%
GAAAACAGCATAGACCCATT+TGG - chr1_2:6722182-6722201 None:intergenic 40.0%
!!! AATGGGTCTATGCTGTTTTC+TGG + chr1_2:6722182-6722201 Msa0052460:CDS 40.0%
! TGTTTAAGGTGGGAATTTGG+AGG + chr1_2:6722360-6722379 Msa0052460:intron 40.0%
! GTTTAAGGTGGGAATTTGGA+GGG + chr1_2:6722361-6722380 Msa0052460:intron 40.0%
ACTTCTCTTGATCGTTCCAA+GGG + chr1_2:6722384-6722403 Msa0052460:CDS 40.0%
GAATGTGAGCAAAGGAAGAA+TGG + chr1_2:6722606-6722625 Msa0052460:CDS 40.0%
! CAGCAGATAATGGTCACAAA+TGG + chr1_2:6722849-6722868 Msa0052460:CDS 40.0%
ATGCTAACTATGTTGGTCCA+TGG + chr1_2:6722900-6722919 Msa0052460:CDS 40.0%
! ATTCAGGCATTCAGGTTAGT+TGG + chr1_2:6723282-6723301 Msa0052460:intron 40.0%
! TTCAGGCATTCAGGTTAGTT+GGG + chr1_2:6723283-6723302 Msa0052460:intron 40.0%
TTTCAGTCCTCAATTGTGTG+AGG - chr1_2:6723795-6723814 None:intergenic 40.0%
TGGTCTCTAAATATGTGGGT+CGG - chr1_2:6724074-6724093 None:intergenic 40.0%
AAAGTAATCCTGGCATGGTT+TGG - chr1_2:6724217-6724236 None:intergenic 40.0%
GGCTATCATGGAGAAATAGT+TGG - chr1_2:6724369-6724388 None:intergenic 40.0%
TTGTTAGGCAAAGAAAGTGG+AGG - chr1_2:6724449-6724468 None:intergenic 40.0%
CCTCTTCAATCTTCACTTTG+TGG - chr1_2:6724514-6724533 None:intergenic 40.0%
CCACAAAGTGAAGATTGAAG+AGG + chr1_2:6724511-6724530 Msa0052460:CDS 40.0%
GAGATCAAAAAGGAAAGGCA+GGG + chr1_2:6724558-6724577 Msa0052460:CDS 40.0%
! CAACCATAATGGAGTGAGTG+GGG + chr1_2:6721986-6722005 Msa0052460:five_prime_UTR 45.0%
!! AAAAGAGTGGGGAGAGTGTT+GGG - chr1_2:6722067-6722086 None:intergenic 45.0%
! AAAAAGAGTGGGGAGAGTGT+TGG - chr1_2:6722068-6722087 None:intergenic 45.0%
!!! CCCCACTCTTTTTTGCACAA+TGG + chr1_2:6722075-6722094 Msa0052460:exon 45.0%
!!! GGTCTATGCTGTTTTCTGGA+GGG + chr1_2:6722186-6722205 Msa0052460:CDS 45.0%
GACTTCTCTTGATCGTTCCA+AGG + chr1_2:6722383-6722402 Msa0052460:CDS 45.0%
GGGAAAGTTGCAGCAGATAA+TGG + chr1_2:6722839-6722858 Msa0052460:CDS 45.0%
GGGTGTGATGCTAACTATGT+TGG + chr1_2:6722893-6722912 Msa0052460:CDS 45.0%
GCTGTCATTGCTGTCAAAGA+AGG + chr1_2:6723444-6723463 Msa0052460:CDS 45.0%
AACAGTGCCTCACACAATTG+AGG + chr1_2:6723785-6723804 Msa0052460:intron 45.0%
!! GGCATTGATGTTCCATTCTG+TGG - chr1_2:6724413-6724432 None:intergenic 45.0%
GAACATCAATGCCACCACTT+TGG + chr1_2:6724420-6724439 Msa0052460:CDS 45.0%
GGAGATCAAAAAGGAAAGGC+AGG + chr1_2:6724557-6724576 Msa0052460:CDS 45.0%
ATCAAAAAGGAAAGGCAGGG+TGG + chr1_2:6724561-6724580 Msa0052460:CDS 45.0%
ATTAGGCCACCACAATGGTA+TGG + chr1_2:6724681-6724700 Msa0052460:three_prime_UTR 45.0%
TTAGGCCACCACAATGGTAT+GGG + chr1_2:6724682-6724701 Msa0052460:three_prime_UTR 45.0%
! TGGGTGGCACATTTTATGTG+TGG + chr1_2:6724701-6724720 Msa0052460:three_prime_UTR 45.0%
! GGCACATTTTATGTGTGGTG+TGG + chr1_2:6724706-6724725 Msa0052460:three_prime_UTR 45.0%
GTACCCCACTCACTCCATTA+TGG - chr1_2:6721992-6722011 None:intergenic 50.0%
!!! GGGTCTATGCTGTTTTCTGG+AGG + chr1_2:6722185-6722204 Msa0052460:CDS 50.0%
CTTGGTGGAGGAAAGATACG+TGG - chr1_2:6722217-6722236 None:intergenic 50.0%
CACGTATCTTTCCTCCACCA+AGG + chr1_2:6722215-6722234 Msa0052460:CDS 50.0%
TTTGACAGCAACCAAGGGCA+TGG + chr1_2:6723246-6723265 Msa0052460:intron 50.0%
! TTGACAGCAACCAAGGGCAT+GGG + chr1_2:6723247-6723266 Msa0052460:intron 50.0%
AACTGAAACTCCCATGCCCT+TGG - chr1_2:6723260-6723279 None:intergenic 50.0%
! GTAATCCTGGCATGGTTTGG+AGG - chr1_2:6724214-6724233 None:intergenic 50.0%
GAAAGTGGAGGTGACCAAAG+TGG - chr1_2:6724437-6724456 None:intergenic 50.0%
ATGTGCCACCCATACCATTG+TGG - chr1_2:6724693-6724712 None:intergenic 50.0%
AGCTACCTCCAAACCATGCC+AGG + chr1_2:6724206-6724225 Msa0052460:CDS 55.0%
AGTGGAGGTGACCAAAGTGG+TGG - chr1_2:6724434-6724453 None:intergenic 55.0%
TTGTGGTGGCCTAATCCCAG+TGG - chr1_2:6724676-6724695 None:intergenic 55.0%
CTGGGATTAGGCCACCACAA+TGG + chr1_2:6724676-6724695 Msa0052460:three_prime_UTR 55.0%
TGCCACCCATACCATTGTGG+TGG - chr1_2:6724690-6724709 None:intergenic 55.0%
GGCCACCACAATGGTATGGG+TGG + chr1_2:6724685-6724704 Msa0052460:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 6721976 6724817 6721976 ID=Msa0052460;Name=Msa0052460
chr1_2 mRNA 6721976 6724817 6721976 ID=Msa0052460-mRNA-1;Parent=Msa0052460;Name=Msa0052460-mRNA-1;_AED=0.25;_eAED=0.25;_QI=118|1|1|1|1|1|7|228|321
chr1_2 exon 6721976 6722236 6721976 ID=Msa0052460-mRNA-1:exon:2227;Parent=Msa0052460-mRNA-1
chr1_2 exon 6722368 6722421 6722368 ID=Msa0052460-mRNA-1:exon:2228;Parent=Msa0052460-mRNA-1
chr1_2 exon 6722569 6722700 6722569 ID=Msa0052460-mRNA-1:exon:2229;Parent=Msa0052460-mRNA-1
chr1_2 exon 6722832 6722940 6722832 ID=Msa0052460-mRNA-1:exon:2230;Parent=Msa0052460-mRNA-1
chr1_2 exon 6723254 6723295 6723254 ID=Msa0052460-mRNA-1:exon:2231;Parent=Msa0052460-mRNA-1
chr1_2 exon 6723438 6723494 6723438 ID=Msa0052460-mRNA-1:exon:2232;Parent=Msa0052460-mRNA-1
chr1_2 exon 6724161 6724817 6724161 ID=Msa0052460-mRNA-1:exon:2233;Parent=Msa0052460-mRNA-1
chr1_2 five_prime_UTR 6721976 6722093 6721976 ID=Msa0052460-mRNA-1:five_prime_utr;Parent=Msa0052460-mRNA-1
chr1_2 CDS 6722094 6722236 6722094 ID=Msa0052460-mRNA-1:cds;Parent=Msa0052460-mRNA-1
chr1_2 CDS 6722368 6722421 6722368 ID=Msa0052460-mRNA-1:cds;Parent=Msa0052460-mRNA-1
chr1_2 CDS 6722569 6722700 6722569 ID=Msa0052460-mRNA-1:cds;Parent=Msa0052460-mRNA-1
chr1_2 CDS 6722832 6722940 6722832 ID=Msa0052460-mRNA-1:cds;Parent=Msa0052460-mRNA-1
chr1_2 CDS 6723254 6723295 6723254 ID=Msa0052460-mRNA-1:cds;Parent=Msa0052460-mRNA-1
chr1_2 CDS 6723438 6723494 6723438 ID=Msa0052460-mRNA-1:cds;Parent=Msa0052460-mRNA-1
chr1_2 CDS 6724161 6724589 6724161 ID=Msa0052460-mRNA-1:cds;Parent=Msa0052460-mRNA-1
chr1_2 three_prime_UTR 6724590 6724817 6724590 ID=Msa0052460-mRNA-1:three_prime_utr;Parent=Msa0052460-mRNA-1
Gene Sequence

>Msa0052460

ATGGAAAGTGGATTACCCTTGCTTCATTCTCTCTTGCAACATACTCTAAGAAACTTATGCTCATTTCCTACCTCTTCAACTTCTTCCAAATGGGTCTATGCTGTTTTCTGGAGGGTAGTACCACGTATCTTTCCTCCACCAAGGTGGGAATTTGGAGGGACTTCTCTTGATCGTTCCAAGGGAAATAAAAGAAATTGGATTATTGTATGGGAAGATGGATTCTGTGATTTTAATGAATGTGAGCAAAGGAAGAATGGATGCTTGAATGAAAGATTTGGAGCTGATGTATTCTTCAAAATGTCTCATGAGGTTTATAGTTATGGAGAAGGATTAGTGGGGAAAGTTGCAGCAGATAATGGTCACAAATGGGTTTATAGTGACACTCAAAATGGGTGTGATGCTAACTATGTTGGTCCATGGAATGCTTCAATTGATCATCAACCAAGGGCATGGGAGTTTCAGTTAAATTCAGGCATTCAGACTATTGCTGTCATTGCTGTCAAAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGATTGCAGAAGATCTTGATTTAGTGCTCAACATACAAAGGAAATTCAGCTACCTCCAAACCATGCCAGGATTACTTTCATTTCAAAGACCACAACACATACCATTTCAACATCCATGCATTACCAAACCAAATTTCCAAATGATGGAAAACAATGAAGTTTCTAAGAACCATGTAACCAAACTTAATAACATGCAAGATGAAAGATCCAACTATTTCTCCATGATAGCCATAAACTTAGGTTTAAATCATCCACAGAATGGAACATCAATGCCACCACTTTGGTCACCTCCACTTTCTTTGCCTAACAATCACATTCAACTTCATGAAACAAGTAGGATCAATAACACAAGCCACAAAGTGAAGATTGAAGAGGGCACATTTCATATTGCTAATTATGGAGATCAAAAAGGAAAGGCAGGGTGGTCCTAA

Protein sequence

>Msa0052460

MESGLPLLHSLLQHTLRNLCSFPTSSTSSKWVYAVFWRVVPRIFPPPRWEFGGTSLDRSKGNKRNWIIVWEDGFCDFNECEQRKNGCLNERFGADVFFKMSHEVYSYGEGLVGKVAADNGHKWVYSDTQNGCDANYVGPWNASIDHQPRAWEFQLNSGIQTIAVIAVKEGLVQLGSFNKIAEDLDLVLNIQRKFSYLQTMPGLLSFQRPQHIPFQHPCITKPNFQMMENNEVSKNHVTKLNNMQDERSNYFSMIAINLGLNHPQNGTSMPPLWSPPLSLPNNHIQLHETSRINNTSHKVKIEEGTFHIANYGDQKGKAGWS*