AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097050 MtrunA17_Chr1g0152981 97.819 321 7 0 1 321 1 321 0.0 662
Msa0097050 MtrunA17_Chr5g0413871 47.639 233 98 6 11 225 13 239 3.84e-69 219
Msa0097050 MtrunA17_Chr2g0317011 39.594 197 93 7 12 203 20 195 3.36e-32 124
Msa0097050 MtrunA17_Chr7g0239641 37.037 108 60 3 97 202 82 183 2.46e-15 76.6
Msa0097050 MtrunA17_Chr1g0184231 27.919 197 79 8 12 194 5 152 2.60e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097050 AT1G60060.1 48.113 212 86 5 11 204 13 218 3.44e-66 213
Msa0097050 AT1G60060.2 45.714 175 75 4 48 204 6 178 1.59e-48 166
Msa0097050 AT3G15240.2 38.265 196 102 6 12 203 34 214 8.44e-33 125
Msa0097050 AT5G53900.2 38.000 200 99 7 12 203 21 203 3.97e-31 120
Msa0097050 AT1G06150.1 29.843 191 93 6 12 197 5 159 1.26e-15 78.2
Msa0097050 AT1G06150.2 29.843 191 93 6 12 197 5 159 1.30e-15 78.2
Msa0097050 AT2G31280.1 31.250 192 92 8 8 198 1 153 3.48e-15 76.6
Msa0097050 AT2G31280.3 31.250 192 92 8 8 198 1 153 4.50e-15 76.3
Msa0097050 AT5G53900.3 44.186 86 47 1 112 197 1 85 9.30e-15 73.6
Msa0097050 AT5G53900.1 44.186 86 47 1 112 197 1 85 9.30e-15 73.6

Find 95 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCATCATTTGGAAATT+TGG 0.071257 1_3:+2848081 None:intergenic
ATGATTTAAACCTAAGTTTA+TGG 0.157867 1_3:+2847981 None:intergenic
GTGTTATTTGTTTAGGAATT+AGG 0.179358 1_3:+2847783 None:intergenic
ACATTTCATATTGCTAATTA+TGG 0.183731 1_3:-2847832 Msa0097050:CDS
TACAATAGTGTTCAACATTT+TGG 0.189842 1_3:-2850340 Msa0097050:five_prime_UTR
CTTCATTGCTTTCCATCATT+TGG 0.227927 1_3:+2848073 None:intergenic
CCTCTTCAATCTTCACTTTG+TGG 0.264703 1_3:+2847857 None:intergenic
ATCTTGCATGTTATTAAGTT+TGG 0.269651 1_3:+2848032 None:intergenic
TGTTGTTTAAGGTGGGAATT+TGG 0.274976 1_3:-2850002 Msa0097050:intron
TCAGTTAAATTCAGGCATTC+AGG 0.281549 1_3:-2849085 Msa0097050:intron
ACAACTAGTGTTATTTGTTT+AGG 0.284914 1_3:+2847776 None:intergenic
TGTTGAACACTATTGTAAAA+TGG 0.307117 1_3:+2850346 None:intergenic
GCTAATTATGGAGATCAAAA+AGG 0.316814 1_3:-2847820 Msa0097050:CDS
CCAAGGGAAATAAAAGAAAT+TGG 0.316828 1_3:-2849959 Msa0097050:intron
GTTTATAGTGACACTCAAAA+TGG 0.326390 1_3:-2849487 Msa0097050:CDS
TCTCATGAGGTTTATAGTTA+TGG 0.339420 1_3:-2849687 Msa0097050:CDS
GGATGCTTGAATGAAAGATT+TGG 0.362727 1_3:-2849732 Msa0097050:CDS
TGTTTGTTAGGATTATTGTA+TGG 0.365430 1_3:-2849800 Msa0097050:intron
ACCTAAGTTTATGGCTATCA+TGG 0.369497 1_3:+2847990 None:intergenic
CATCATTTGGAAATTTGGTT+TGG 0.377261 1_3:+2848086 None:intergenic
CAAACCAAATTTCCAAATGA+TGG 0.379754 1_3:-2848085 Msa0097050:CDS
GTACCCCACTCACTCCATTA+TGG 0.380599 1_3:+2850368 None:intergenic
TTCAACTTCATGAAACAAAT+AGG 0.381434 1_3:-2847894 Msa0097050:CDS
TGGGAGTTTCAGTTAAATTC+AGG 0.382777 1_3:-2849093 Msa0097050:CDS
GGGAAAGTTGCAGCAGATAA+TGG 0.383947 1_3:-2849520 Msa0097050:CDS
TGAAGTTGAATGTGATTGTT+AGG 0.384096 1_3:+2847907 None:intergenic
TGTTATTAAGTTTGGTTACA+TGG 0.402972 1_3:+2848040 None:intergenic
ATAAATATTATGCAGATTAG+TGG 0.407993 1_3:-2849542 Msa0097050:intron
CCTCTTCAACTTCTTCCAAA+TGG 0.409092 1_3:-2850194 Msa0097050:CDS
CTTTGAAATGAAAGTAATCC+TGG 0.413784 1_3:+2848144 None:intergenic
AAAGTAATCCTGGCATGGTT+TGG 0.415252 1_3:+2848154 None:intergenic
AGGATTATTGTATGGGAAGA+TGG 0.415442 1_3:-2849792 Msa0097050:CDS
AAAAGAGTGGGGAGAGTGTT+GGG 0.415986 1_3:+2850293 None:intergenic
CAGCAGATAATGGTCACAAA+TGG 0.418083 1_3:-2849510 Msa0097050:CDS
CTCTTCAACTTCTTCCAAAT+GGG 0.420849 1_3:-2850193 Msa0097050:CDS
TAAATATTATGCAGATTAGT+GGG 0.421333 1_3:-2849541 Msa0097050:intron
AACTGAAACTCCCATGCCCT+TGG 0.450146 1_3:+2849102 None:intergenic
GCTGTCATTGCTGTCAAAGA+AGG 0.450482 1_3:-2848926 Msa0097050:CDS
GTAATGCATGGATGTTGAAA+TGG 0.457555 1_3:+2848108 None:intergenic
AGCTACCTCCAAACCATGCC+AGG 0.471115 1_3:-2848162 Msa0097050:CDS
TACAACCATAATGGAGTGAG+TGG 0.475355 1_3:-2850373 Msa0097050:five_prime_UTR
GGCTATCATGGAGAAATAGT+TGG 0.477446 1_3:+2848002 None:intergenic
GAAAACAGCATAGACCCATT+TGG 0.478391 1_3:+2850179 None:intergenic
ATTTAACATTAATGAACAAA+AGG 0.480526 1_3:+2847604 None:intergenic
AGCAGATAATGGTCACAAAT+GGG 0.486308 1_3:-2849509 Msa0097050:CDS
GAATGTGAGCAAAGGAAGAA+TGG 0.490985 1_3:-2849753 Msa0097050:CDS
TTTGACAGCAACCAAGGGCA+TGG 0.491667 1_3:-2849113 Msa0097050:intron
ATTAGGCCACCACAATGGTA+TGG 0.496095 1_3:-2847687 Msa0097050:three_prime_UTR
GGCATTGATGTTCCATTCTG+TGG 0.500646 1_3:+2847958 None:intergenic
TTTATAGTGACACTCAAAAT+GGG 0.504799 1_3:-2849486 Msa0097050:CDS
GTTTGTTAGGATTATTGTAT+GGG 0.510760 1_3:-2849799 Msa0097050:intron
GGTTTAAATCATCCACAGAA+TGG 0.513835 1_3:-2847970 Msa0097050:CDS
TCCATGATAGCCATAAACTT+AGG 0.517062 1_3:-2847991 Msa0097050:CDS
GACTTCTCTTGATCGTTCCA+AGG 0.518829 1_3:-2849976 Msa0097050:CDS
AGTATAATGATCACATTTGA+AGG 0.520545 1_3:+2850316 None:intergenic
TTGACAGCAACCAAGGGCAT+GGG 0.522018 1_3:-2849112 Msa0097050:intron
GAGGTTTATAGTTATGGAGA+AGG 0.523360 1_3:-2849681 Msa0097050:CDS
GAACATCAATGCCACCACTT+TGG 0.530008 1_3:-2847948 Msa0097050:CDS
TTAGGCCACCACAATGGTAT+GGG 0.530375 1_3:-2847686 Msa0097050:three_prime_UTR
GTAATCCTGGCATGGTTTGG+AGG 0.532606 1_3:+2848157 None:intergenic
TGTTTAAGGTGGGAATTTGG+AGG 0.535611 1_3:-2849999 Msa0097050:intron
AAATGAAAGTAATCCTGGCA+TGG 0.539286 1_3:+2848149 None:intergenic
GTTTAAGGTGGGAATTTGGA+GGG 0.541664 1_3:-2849998 Msa0097050:intron
AATTATAATTATGAGAGAGA+TGG 0.544464 1_3:-2847730 Msa0097050:three_prime_UTR
AGGTTTATAGTTATGGAGAA+GGG 0.550052 1_3:-2849680 Msa0097050:intron
AAAGAAGGCTTAGTACAACT+TGG 0.558403 1_3:-2848911 Msa0097050:CDS
CCATTTGGAAGAAGTTGAAG+AGG 0.562010 1_3:+2850194 None:intergenic
AAATTTGGTTTGGTAATGCA+TGG 0.564278 1_3:+2848096 None:intergenic
TTGGAAGAAGTTGAAGAGGT+AGG 0.566819 1_3:+2850198 None:intergenic
ATTCTTCAAAATGTCTCATG+AGG 0.574625 1_3:-2849700 Msa0097050:CDS
TGATCAATTGAAGCATTCCA+TGG 0.576323 1_3:+2849442 None:intergenic
ATGCTAACTATGTTGGTCCA+TGG 0.581522 1_3:-2849459 Msa0097050:CDS
ACTTCTCTTGATCGTTCCAA+GGG 0.587449 1_3:-2849975 Msa0097050:CDS
CACAAAGTGAAGATTGAAGA+GGG 0.588802 1_3:-2847856 Msa0097050:CDS
TGTTGAAATGGTATGTGTTG+TGG 0.592823 1_3:+2848120 None:intergenic
ATTTAGTGCTCAACATACAA+AGG 0.592918 1_3:-2848191 Msa0097050:CDS
TGATTGTTAGGCAAAGAAAG+TGG 0.598592 1_3:+2847919 None:intergenic
ACAACTTGGTTCATTTAACA+AGG 0.613113 1_3:-2848897 Msa0097050:intron
TGCAAGAGAGAATGAAGCAA+GGG 0.620819 1_3:+2850249 None:intergenic
AAATATTATGCAGATTAGTG+GGG 0.628220 1_3:-2849540 Msa0097050:intron
GGCCACCACAATGGTATGGG+TGG 0.628616 1_3:-2847683 Msa0097050:three_prime_UTR
GGGTGTGATGCTAACTATGT+TGG 0.633314 1_3:-2849466 Msa0097050:CDS
CCACAAAGTGAAGATTGAAG+AGG 0.636709 1_3:-2847857 Msa0097050:CDS
TTGCAAGAGAGAATGAAGCA+AGG 0.644935 1_3:+2850248 None:intergenic
CAACCATAATGGAGTGAGTG+GGG 0.651877 1_3:-2850371 Msa0097050:five_prime_UTR
ACAACCATAATGGAGTGAGT+GGG 0.662506 1_3:-2850372 Msa0097050:five_prime_UTR
GAAAGTGGAGGTGACCAAAG+TGG 0.664958 1_3:+2847934 None:intergenic
AGTGGAGGTGACCAAAGTGG+TGG 0.667830 1_3:+2847937 None:intergenic
TGCCACCCATACCATTGTGG+TGG 0.687268 1_3:+2847681 None:intergenic
CACGTATCTTTCCTCCACCA+AGG 0.689055 1_3:-2850143 Msa0097050:intron
TTGTTAGGCAAAGAAAGTGG+AGG 0.694470 1_3:+2847922 None:intergenic
ATGTGCCACCCATACCATTG+TGG 0.698050 1_3:+2847678 None:intergenic
CTGGGATTAGGCCACCACAA+TGG 0.700123 1_3:-2847692 Msa0097050:three_prime_UTR
CTTGGTGGAGGAAAGATACG+TGG 0.715762 1_3:+2850144 None:intergenic
TTGTGGTGGCCTAATCCCAG+TGG 0.727420 1_3:+2847695 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTTTTTTTTATAGTAT+AGG - chr1_3:2847891-2847910 Msa0097050:CDS 10.0%
!!! AAAATTACAAAAACATTTTA+AGG + chr1_3:2849323-2849342 None:intergenic 10.0%
!!! TTTTTTAATTTTGTTACATA+AGG + chr1_3:2849472-2849491 None:intergenic 10.0%
!!! TAATATTTAGTATTTTACCT+TGG + chr1_3:2847836-2847855 None:intergenic 15.0%
!!! AAATCTTATTTTCTTAAACA+TGG + chr1_3:2848344-2848363 None:intergenic 15.0%
!!! ATCAAATTACTATTCATTTT+TGG - chr1_3:2849001-2849020 Msa0097050:intron 15.0%
!! ACTAATGAAATATACATTTA+AGG + chr1_3:2849525-2849544 None:intergenic 15.0%
!! ATTTAACATTAATGAACAAA+AGG + chr1_3:2850358-2850377 None:intergenic 15.0%
!!! AATTGGTAAGTTTTATTTCA+TGG - chr1_3:2848017-2848036 Msa0097050:CDS 20.0%
!!! AGATTTTACTATCTTTTTAG+TGG - chr1_3:2848358-2848377 Msa0097050:intron 20.0%
!!! GATTTTACTATCTTTTTAGT+GGG - chr1_3:2848359-2848378 Msa0097050:intron 20.0%
!! ATAAATATTATGCAGATTAG+TGG - chr1_3:2848417-2848436 Msa0097050:intron 20.0%
!! TAAATATTATGCAGATTAGT+GGG - chr1_3:2848418-2848437 Msa0097050:intron 20.0%
!! CATAATTTACAAAGAAAATG+AGG + chr1_3:2848771-2848790 None:intergenic 20.0%
!!! CTCATTTTCTTTGTAAATTA+TGG - chr1_3:2848769-2848788 Msa0097050:intron 20.0%
!! CTATTTCAATGTTAACTTAT+GGG + chr1_3:2848799-2848818 None:intergenic 20.0%
!! ACTATTTCAATGTTAACTTA+TGG + chr1_3:2848800-2848819 None:intergenic 20.0%
!!! ATAGTAATTTGATAGCATTA+TGG + chr1_3:2848994-2849013 None:intergenic 20.0%
!!! ACGATTTTTTCGAAATATTT+AGG + chr1_3:2849420-2849439 None:intergenic 20.0%
!!! ATCTTTAGTCTGTAATTTTA+TGG + chr1_3:2849589-2849608 None:intergenic 20.0%
!! ATGATTTAAACCTAAGTTTA+TGG + chr1_3:2849981-2850000 None:intergenic 20.0%
!! ACATTTCATATTGCTAATTA+TGG - chr1_3:2850127-2850146 Msa0097050:intron 20.0%
!! AATTATAATTATGAGAGAGA+TGG - chr1_3:2850229-2850248 Msa0097050:CDS 20.0%
! TGTTGAACACTATTGTAAAA+TGG + chr1_3:2847616-2847635 None:intergenic 25.0%
!! TACAATAGTGTTCAACATTT+TGG - chr1_3:2847619-2847638 Msa0097050:three_prime_UTR 25.0%
! AGTATAATGATCACATTTGA+AGG + chr1_3:2847646-2847665 None:intergenic 25.0%
!! TATTTAGTATTTTACCTTGG+TGG + chr1_3:2847833-2847852 None:intergenic 25.0%
!!! AATAACACGTTTTGTTTGTT+AGG - chr1_3:2848147-2848166 Msa0097050:CDS 25.0%
!! TGTTTGTTAGGATTATTGTA+TGG - chr1_3:2848159-2848178 Msa0097050:CDS 25.0%
!! GTTTGTTAGGATTATTGTAT+GGG - chr1_3:2848160-2848179 Msa0097050:CDS 25.0%
!!! ATTTTAATGAATGTGAGCAA+AGG - chr1_3:2848198-2848217 Msa0097050:CDS 25.0%
! AAATATTATGCAGATTAGTG+GGG - chr1_3:2848419-2848438 Msa0097050:intron 25.0%
! TTTATAGTGACACTCAAAAT+GGG - chr1_3:2848473-2848492 Msa0097050:intron 25.0%
!! AACATTTAGAATTTGCACAA+AGG + chr1_3:2848602-2848621 None:intergenic 25.0%
! ACACAAAAGTTGTCAAAAAA+TGG + chr1_3:2848683-2848702 None:intergenic 25.0%
!! TCTGTCTTTTATTAGTTAGT+TGG - chr1_3:2849238-2849257 Msa0097050:intron 25.0%
!! TTTCGAAAAAATCGTCATTT+TGG - chr1_3:2849425-2849444 Msa0097050:intron 25.0%
! TCATCAAATATATCTTTCGT+TGG - chr1_3:2849553-2849572 Msa0097050:intron 25.0%
!!! ATTTTGGTCTCTAAATATGT+GGG + chr1_3:2849669-2849688 None:intergenic 25.0%
! TGTTATTAAGTTTGGTTACA+TGG + chr1_3:2849922-2849941 None:intergenic 25.0%
! ATCTTGCATGTTATTAAGTT+TGG + chr1_3:2849930-2849949 None:intergenic 25.0%
! TTCAACTTCATGAAACAAAT+AGG - chr1_3:2850065-2850084 Msa0097050:intron 25.0%
!!! GTGTTATTTGTTTAGGAATT+AGG + chr1_3:2850179-2850198 None:intergenic 25.0%
!!! ACAACTAGTGTTATTTGTTT+AGG + chr1_3:2850186-2850205 None:intergenic 25.0%
!! CTAATGTGCTTTGTTGTTTA+AGG - chr1_3:2847946-2847965 Msa0097050:CDS 30.0%
!! CCAATTTCTTTTATTTCCCT+TGG + chr1_3:2848003-2848022 None:intergenic 30.0%
CCAAGGGAAATAAAAGAAAT+TGG - chr1_3:2848000-2848019 Msa0097050:CDS 30.0%
ATTCTTCAAAATGTCTCATG+AGG - chr1_3:2848259-2848278 Msa0097050:intron 30.0%
TCTCATGAGGTTTATAGTTA+TGG - chr1_3:2848272-2848291 Msa0097050:intron 30.0%
AGGTTTATAGTTATGGAGAA+GGG - chr1_3:2848279-2848298 Msa0097050:intron 30.0%
GTTTATAGTGACACTCAAAA+TGG - chr1_3:2848472-2848491 Msa0097050:intron 30.0%
ATGCTTCAATTGATCATGTA+AGG - chr1_3:2848524-2848543 Msa0097050:intron 30.0%
TGCTTCAATTGATCATGTAA+GGG - chr1_3:2848525-2848544 Msa0097050:intron 30.0%
! ATTTAGAATTTGCACAAAGG+AGG + chr1_3:2848599-2848618 None:intergenic 30.0%
!! TTAAATTTTGACAGCAACCA+AGG - chr1_3:2848840-2848859 Msa0097050:intron 30.0%
!! TAAATTTTGACAGCAACCAA+GGG - chr1_3:2848841-2848860 Msa0097050:intron 30.0%
ACAACTTGGTTCATTTAACA+AGG - chr1_3:2849062-2849081 Msa0097050:intron 30.0%
!! GCTCATATTTTGAAGGAAAA+AGG + chr1_3:2849095-2849114 None:intergenic 30.0%
! ATATGAGCACAGAACAATTT+TGG - chr1_3:2849107-2849126 Msa0097050:CDS 30.0%
!! TTTTGGTCTTTAAATATGCG+CGG - chr1_3:2849124-2849143 Msa0097050:intron 30.0%
TTTGATACGTGTAGAATTCA+AGG - chr1_3:2849340-2849359 Msa0097050:intron 30.0%
TTGATACGTGTAGAATTCAA+GGG - chr1_3:2849341-2849360 Msa0097050:intron 30.0%
TTGCAAGTTTAATACATTCG+TGG - chr1_3:2849627-2849646 Msa0097050:intron 30.0%
!! GATTTTGGTCTCTAAATATG+TGG + chr1_3:2849670-2849689 None:intergenic 30.0%
! ATTTGAGTAGATCGTGATTT+TGG + chr1_3:2849685-2849704 None:intergenic 30.0%
ATTTAGTGCTCAACATACAA+AGG - chr1_3:2849768-2849787 Msa0097050:CDS 30.0%
!! CTTTGAAATGAAAGTAATCC+TGG + chr1_3:2849818-2849837 None:intergenic 30.0%
!! AAATTTGGTTTGGTAATGCA+TGG + chr1_3:2849866-2849885 None:intergenic 30.0%
CATCATTTGGAAATTTGGTT+TGG + chr1_3:2849876-2849895 None:intergenic 30.0%
CAAACCAAATTTCCAAATGA+TGG - chr1_3:2849874-2849893 Msa0097050:intron 30.0%
CTTTCCATCATTTGGAAATT+TGG + chr1_3:2849881-2849900 None:intergenic 30.0%
TGAAGTTGAATGTGATTGTT+AGG + chr1_3:2850055-2850074 None:intergenic 30.0%
GCTAATTATGGAGATCAAAA+AGG - chr1_3:2850139-2850158 Msa0097050:intron 30.0%
TTATGGAGATCAAAAAGGAA+AGG - chr1_3:2850144-2850163 Msa0097050:CDS 30.0%
TTCCATTGTGCAAAAAGAGT+GGG + chr1_3:2847681-2847700 None:intergenic 35.0%
TTTCCATTGTGCAAAAAGAG+TGG + chr1_3:2847682-2847701 None:intergenic 35.0%
! TCTTTTTGCACAATGGAAAG+TGG - chr1_3:2847683-2847702 Msa0097050:three_prime_UTR 35.0%
CTCTTCAACTTCTTCCAAAT+GGG - chr1_3:2847766-2847785 Msa0097050:three_prime_UTR 35.0%
! TTAGTATTTTACCTTGGTGG+AGG + chr1_3:2847830-2847849 None:intergenic 35.0%
!! ATGTGCTTTGTTGTTTAAGG+TGG - chr1_3:2847949-2847968 Msa0097050:CDS 35.0%
!! TGTGCTTTGTTGTTTAAGGT+GGG - chr1_3:2847950-2847969 Msa0097050:CDS 35.0%
! TGTTGTTTAAGGTGGGAATT+TGG - chr1_3:2847957-2847976 Msa0097050:CDS 35.0%
AGGATTATTGTATGGGAAGA+TGG - chr1_3:2848167-2848186 Msa0097050:CDS 35.0%
GGATGCTTGAATGAAAGATT+TGG - chr1_3:2848227-2848246 Msa0097050:intron 35.0%
GAGGTTTATAGTTATGGAGA+AGG - chr1_3:2848278-2848297 Msa0097050:intron 35.0%
! AAACATGGCAAGAAAGTGTA+AGG + chr1_3:2848329-2848348 None:intergenic 35.0%
! AGCAGATAATGGTCACAAAT+GGG - chr1_3:2848450-2848469 Msa0097050:intron 35.0%
! TGATCAATTGAAGCATTCCA+TGG + chr1_3:2848520-2848539 None:intergenic 35.0%
TGGGAGTTTCAGTTAAATTC+AGG - chr1_3:2848866-2848885 Msa0097050:intron 35.0%
TCAGTTAAATTCAGGCATTC+AGG - chr1_3:2848874-2848893 Msa0097050:intron 35.0%
AAAGAAGGCTTAGTACAACT+TGG - chr1_3:2849048-2849067 Msa0097050:intron 35.0%
!! GTTCTGTGCTCATATTTTGA+AGG + chr1_3:2849102-2849121 None:intergenic 35.0%
AAATGAAAGTAATCCTGGCA+TGG + chr1_3:2849813-2849832 None:intergenic 35.0%
TGTTGAAATGGTATGTGTTG+TGG + chr1_3:2849842-2849861 None:intergenic 35.0%
GTAATGCATGGATGTTGAAA+TGG + chr1_3:2849854-2849873 None:intergenic 35.0%
CTTCATTGCTTTCCATCATT+TGG + chr1_3:2849889-2849908 None:intergenic 35.0%
TCCATGATAGCCATAAACTT+AGG - chr1_3:2849968-2849987 Msa0097050:CDS 35.0%
ACCTAAGTTTATGGCTATCA+TGG + chr1_3:2849972-2849991 None:intergenic 35.0%
GGTTTAAATCATCCACAGAA+TGG - chr1_3:2849989-2850008 Msa0097050:CDS 35.0%
TGATTGTTAGGCAAAGAAAG+TGG + chr1_3:2850043-2850062 None:intergenic 35.0%
CACAAAGTGAAGATTGAAGA+GGG - chr1_3:2850103-2850122 Msa0097050:intron 35.0%
! ATGGTTGTATTTTGTACCAC+TGG - chr1_3:2850248-2850267 Msa0097050:CDS 35.0%
! TGGTTGTATTTTGTACCACT+GGG - chr1_3:2850249-2850268 Msa0097050:CDS 35.0%
! TATTTTGTACCACTGGGATT+AGG - chr1_3:2850255-2850274 Msa0097050:CDS 35.0%
! TACAACCATAATGGAGTGAG+TGG - chr1_3:2847586-2847605 Msa0097050:three_prime_UTR 40.0%
! ACAACCATAATGGAGTGAGT+GGG - chr1_3:2847587-2847606 Msa0097050:three_prime_UTR 40.0%
TCCATTGTGCAAAAAGAGTG+GGG + chr1_3:2847680-2847699 None:intergenic 40.0%
TGCAAGAGAGAATGAAGCAA+GGG + chr1_3:2847713-2847732 None:intergenic 40.0%
TTGCAAGAGAGAATGAAGCA+AGG + chr1_3:2847714-2847733 None:intergenic 40.0%
TTGGAAGAAGTTGAAGAGGT+AGG + chr1_3:2847764-2847783 None:intergenic 40.0%
CCATTTGGAAGAAGTTGAAG+AGG + chr1_3:2847768-2847787 None:intergenic 40.0%
CCTCTTCAACTTCTTCCAAA+TGG - chr1_3:2847765-2847784 Msa0097050:three_prime_UTR 40.0%
GAAAACAGCATAGACCCATT+TGG + chr1_3:2847783-2847802 None:intergenic 40.0%
!!! AATGGGTCTATGCTGTTTTC+TGG - chr1_3:2847783-2847802 Msa0097050:exon 40.0%
! TGTTTAAGGTGGGAATTTGG+AGG - chr1_3:2847960-2847979 Msa0097050:CDS 40.0%
! GTTTAAGGTGGGAATTTGGA+GGG - chr1_3:2847961-2847980 Msa0097050:CDS 40.0%
ACTTCTCTTGATCGTTCCAA+GGG - chr1_3:2847984-2848003 Msa0097050:CDS 40.0%
GAATGTGAGCAAAGGAAGAA+TGG - chr1_3:2848206-2848225 Msa0097050:CDS 40.0%
! CAGCAGATAATGGTCACAAA+TGG - chr1_3:2848449-2848468 Msa0097050:intron 40.0%
ATGCTAACTATGTTGGTCCA+TGG - chr1_3:2848500-2848519 Msa0097050:intron 40.0%
! ATTCAGGCATTCAGGTTAGT+TGG - chr1_3:2848882-2848901 Msa0097050:intron 40.0%
! TTCAGGCATTCAGGTTAGTT+GGG - chr1_3:2848883-2848902 Msa0097050:intron 40.0%
TTTCAGTCCTCAATTGTGTG+AGG + chr1_3:2849384-2849403 None:intergenic 40.0%
GTGTCTATGCTAAGTCAGTT+TGG - chr1_3:2849498-2849517 Msa0097050:CDS 40.0%
TGGTCTCTAAATATGTGGGT+CGG + chr1_3:2849665-2849684 None:intergenic 40.0%
AAAGTAATCCTGGCATGGTT+TGG + chr1_3:2849808-2849827 None:intergenic 40.0%
GGCTATCATGGAGAAATAGT+TGG + chr1_3:2849960-2849979 None:intergenic 40.0%
TTGTTAGGCAAAGAAAGTGG+AGG + chr1_3:2850040-2850059 None:intergenic 40.0%
CCTCTTCAATCTTCACTTTG+TGG + chr1_3:2850105-2850124 None:intergenic 40.0%
CCACAAAGTGAAGATTGAAG+AGG - chr1_3:2850102-2850121 Msa0097050:intron 40.0%
GAGATCAAAAAGGAAAGGCA+GGG - chr1_3:2850149-2850168 Msa0097050:CDS 40.0%
! CAACCATAATGGAGTGAGTG+GGG - chr1_3:2847588-2847607 Msa0097050:three_prime_UTR 45.0%
!! AAAAGAGTGGGGAGAGTGTT+GGG + chr1_3:2847669-2847688 None:intergenic 45.0%
! AAAAAGAGTGGGGAGAGTGT+TGG + chr1_3:2847670-2847689 None:intergenic 45.0%
! TCCCCACTCTTTTTGCACAA+TGG - chr1_3:2847676-2847695 Msa0097050:three_prime_UTR 45.0%
!!! GGTCTATGCTGTTTTCTGGA+GGG - chr1_3:2847787-2847806 Msa0097050:exon 45.0%
GACTTCTCTTGATCGTTCCA+AGG - chr1_3:2847983-2848002 Msa0097050:CDS 45.0%
GGGAAAGTTGCAGCAGATAA+TGG - chr1_3:2848439-2848458 Msa0097050:intron 45.0%
GGGTGTGATGCTAACTATGT+TGG - chr1_3:2848493-2848512 Msa0097050:intron 45.0%
GCTGTCATTGCTGTCAAAGA+AGG - chr1_3:2849033-2849052 Msa0097050:intron 45.0%
AACAGTGCCTCACACAATTG+AGG - chr1_3:2849374-2849393 Msa0097050:intron 45.0%
!! GGCATTGATGTTCCATTCTG+TGG + chr1_3:2850004-2850023 None:intergenic 45.0%
GAACATCAATGCCACCACTT+TGG - chr1_3:2850011-2850030 Msa0097050:intron 45.0%
GGAGATCAAAAAGGAAAGGC+AGG - chr1_3:2850148-2850167 Msa0097050:CDS 45.0%
ATCAAAAAGGAAAGGCAGGG+TGG - chr1_3:2850152-2850171 Msa0097050:CDS 45.0%
ATTAGGCCACCACAATGGTA+TGG - chr1_3:2850272-2850291 Msa0097050:exon 45.0%
TTAGGCCACCACAATGGTAT+GGG - chr1_3:2850273-2850292 Msa0097050:exon 45.0%
! TGGGTGGCACATTTTATGTG+TGG - chr1_3:2850292-2850311 Msa0097050:five_prime_UTR 45.0%
GTACCCCACTCACTCCATTA+TGG + chr1_3:2847594-2847613 None:intergenic 50.0%
!!! GGGTCTATGCTGTTTTCTGG+AGG - chr1_3:2847786-2847805 Msa0097050:exon 50.0%
CTTGGTGGAGGAAAGATACG+TGG + chr1_3:2847818-2847837 None:intergenic 50.0%
CACGTATCTTTCCTCCACCA+AGG - chr1_3:2847816-2847835 Msa0097050:CDS 50.0%
TTTGACAGCAACCAAGGGCA+TGG - chr1_3:2848846-2848865 Msa0097050:intron 50.0%
! TTGACAGCAACCAAGGGCAT+GGG - chr1_3:2848847-2848866 Msa0097050:intron 50.0%
AACTGAAACTCCCATGCCCT+TGG + chr1_3:2848860-2848879 None:intergenic 50.0%
! GTAATCCTGGCATGGTTTGG+AGG + chr1_3:2849805-2849824 None:intergenic 50.0%
GAAAGTGGAGGTGACCAAAG+TGG + chr1_3:2850028-2850047 None:intergenic 50.0%
ATGTGCCACCCATACCATTG+TGG + chr1_3:2850284-2850303 None:intergenic 50.0%
AGCTACCTCCAAACCATGCC+AGG - chr1_3:2849797-2849816 Msa0097050:intron 55.0%
AGTGGAGGTGACCAAAGTGG+TGG + chr1_3:2850025-2850044 None:intergenic 55.0%
TTGTGGTGGCCTAATCCCAG+TGG + chr1_3:2850267-2850286 None:intergenic 55.0%
CTGGGATTAGGCCACCACAA+TGG - chr1_3:2850267-2850286 Msa0097050:CDS 55.0%
TGCCACCCATACCATTGTGG+TGG + chr1_3:2850281-2850300 None:intergenic 55.0%
GGCCACCACAATGGTATGGG+TGG - chr1_3:2850276-2850295 Msa0097050:exon 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2847578 2850403 2847578 ID=Msa0097050;Name=Msa0097050
chr1_3 mRNA 2847578 2850403 2847578 ID=Msa0097050-mRNA-1;Parent=Msa0097050;Name=Msa0097050-mRNA-1;_AED=0.25;_eAED=0.25;_QI=117|1|1|1|1|1|7|223|321
chr1_3 exon 2847578 2848229 2847578 ID=Msa0097050-mRNA-1:exon:792;Parent=Msa0097050-mRNA-1
chr1_3 exon 2848898 2848954 2848898 ID=Msa0097050-mRNA-1:exon:791;Parent=Msa0097050-mRNA-1
chr1_3 exon 2849086 2849127 2849086 ID=Msa0097050-mRNA-1:exon:790;Parent=Msa0097050-mRNA-1
chr1_3 exon 2849441 2849549 2849441 ID=Msa0097050-mRNA-1:exon:789;Parent=Msa0097050-mRNA-1
chr1_3 exon 2849681 2849812 2849681 ID=Msa0097050-mRNA-1:exon:788;Parent=Msa0097050-mRNA-1
chr1_3 exon 2849960 2850013 2849960 ID=Msa0097050-mRNA-1:exon:787;Parent=Msa0097050-mRNA-1
chr1_3 exon 2850144 2850403 2850144 ID=Msa0097050-mRNA-1:exon:786;Parent=Msa0097050-mRNA-1
chr1_3 five_prime_UTR 2850287 2850403 2850287 ID=Msa0097050-mRNA-1:five_prime_utr;Parent=Msa0097050-mRNA-1
chr1_3 CDS 2850144 2850286 2850144 ID=Msa0097050-mRNA-1:cds;Parent=Msa0097050-mRNA-1
chr1_3 CDS 2849960 2850013 2849960 ID=Msa0097050-mRNA-1:cds;Parent=Msa0097050-mRNA-1
chr1_3 CDS 2849681 2849812 2849681 ID=Msa0097050-mRNA-1:cds;Parent=Msa0097050-mRNA-1
chr1_3 CDS 2849441 2849549 2849441 ID=Msa0097050-mRNA-1:cds;Parent=Msa0097050-mRNA-1
chr1_3 CDS 2849086 2849127 2849086 ID=Msa0097050-mRNA-1:cds;Parent=Msa0097050-mRNA-1
chr1_3 CDS 2848898 2848954 2848898 ID=Msa0097050-mRNA-1:cds;Parent=Msa0097050-mRNA-1
chr1_3 CDS 2847801 2848229 2847801 ID=Msa0097050-mRNA-1:cds;Parent=Msa0097050-mRNA-1
chr1_3 three_prime_UTR 2847578 2847800 2847578 ID=Msa0097050-mRNA-1:three_prime_utr;Parent=Msa0097050-mRNA-1
Gene Sequence

>Msa0097050

ATGGAAAGTGGATTACCCTTGCTTCATTCTCTCTTGCAACATACTCTAAGAAACTTATGCTCATTTCCTACCTCTTCAACTTCTTCCAAATGGGTCTATGCTGTTTTCTGGAGGGTAGTACCACGTATCTTTCCTCCACCAAGGTGGGAATTTGGAGGGACTTCTCTTGATCGTTCCAAGGGAAATAAAAGAAATTGGATTATTGTATGGGAAGATGGATTCTGTGATTTTAATGAATGTGAGCAAAGGAAGAATGGATGCTTGAATGAAAGATTTGGAGCTGATGTATTCTTCAAAATGTCTCATGAGGTTTATAGTTATGGAGAAGGATTAGTGGGGAAAGTTGCAGCAGATAATGGTCACAAATGGGTTTATAGTGACACTCAAAATGGGTGTGATGCTAACTATGTTGGTCCATGGAATGCTTCAATTGATCATCAACCAAGGGCATGGGAGTTTCAGTTAAATTCAGGCATTCAGACTATTGCTGTCATTGCTGTCAAAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGATTGCAGAAGATCTTGATTTAGTGCTCAACATACAAAGGAAATTCAGCTACCTCCAAACCATGCCAGGATTACTTTCATTTCAAAGACCACAACACATACCATTTCAACATCCATGCATTACCAAACCAAATTTCCAAATGATGGAAAGCAATGAAGTTTCTAAGAACCATGTAACCAAACTTAATAACATGCAAGATGAAAGATCCAACTATTTCTCCATGATAGCCATAAACTTAGGTTTAAATCATCCACAGAATGGAACATCAATGCCACCACTTTGGTCACCTCCACTTTCTTTGCCTAACAATCACATTCAACTTCATGAAACAAATAGGATCAATAACACAAGCCACAAAGTGAAGATTGAAGAGGGCACATTTCATATTGCTAATTATGGAGATCAAAAAGGAAAGGCAGGGTGGTCCTAA

Protein sequence

>Msa0097050

MESGLPLLHSLLQHTLRNLCSFPTSSTSSKWVYAVFWRVVPRIFPPPRWEFGGTSLDRSKGNKRNWIIVWEDGFCDFNECEQRKNGCLNERFGADVFFKMSHEVYSYGEGLVGKVAADNGHKWVYSDTQNGCDANYVGPWNASIDHQPRAWEFQLNSGIQTIAVIAVKEGLVQLGSFNKIAEDLDLVLNIQRKFSYLQTMPGLLSFQRPQHIPFQHPCITKPNFQMMESNEVSKNHVTKLNNMQDERSNYFSMIAINLGLNHPQNGTSMPPLWSPPLSLPNNHIQLHETNRINNTSHKVKIEEGTFHIANYGDQKGKAGWS*