AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0018220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018220 MtrunA17_Chr1g0152981 97.819 321 7 0 1 321 1 321 0.0 662
Msa0018220 MtrunA17_Chr5g0413871 47.639 233 98 6 11 225 13 239 3.84e-69 219
Msa0018220 MtrunA17_Chr2g0317011 39.594 197 93 7 12 203 20 195 3.36e-32 124
Msa0018220 MtrunA17_Chr7g0239641 37.037 108 60 3 97 202 82 183 2.46e-15 76.6
Msa0018220 MtrunA17_Chr1g0184231 27.919 197 79 8 12 194 5 152 2.60e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018220 AT1G60060.1 48.113 212 86 5 11 204 13 218 3.44e-66 213
Msa0018220 AT1G60060.2 45.714 175 75 4 48 204 6 178 1.59e-48 166
Msa0018220 AT3G15240.2 38.265 196 102 6 12 203 34 214 8.44e-33 125
Msa0018220 AT5G53900.2 38.000 200 99 7 12 203 21 203 3.97e-31 120
Msa0018220 AT1G06150.1 29.843 191 93 6 12 197 5 159 1.26e-15 78.2
Msa0018220 AT1G06150.2 29.843 191 93 6 12 197 5 159 1.30e-15 78.2
Msa0018220 AT2G31280.1 31.250 192 92 8 8 198 1 153 3.48e-15 76.6
Msa0018220 AT2G31280.3 31.250 192 92 8 8 198 1 153 4.50e-15 76.3
Msa0018220 AT5G53900.3 44.186 86 47 1 112 197 1 85 9.30e-15 73.6
Msa0018220 AT5G53900.1 44.186 86 47 1 112 197 1 85 9.30e-15 73.6

Find 95 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCATCATTTGGAAATT+TGG 0.071257 1_1:+30400681 None:intergenic
ATGATTTAAACCTAAGTTTA+TGG 0.157867 1_1:+30400581 None:intergenic
GTGTTATTTGTTTAGGAATT+AGG 0.179358 1_1:+30400383 None:intergenic
ACATTTCATATTGCTAATTA+TGG 0.183731 1_1:-30400432 Msa0018220:CDS
TACAATAGTGTTCAACATTT+TGG 0.189842 1_1:-30402943 Msa0018220:five_prime_UTR
CTTCATTGCTTTCCATCATT+TGG 0.227927 1_1:+30400673 None:intergenic
CCTCTTCAATCTTCACTTTG+TGG 0.264703 1_1:+30400457 None:intergenic
ATCTTGCATGTTATTAAGTT+TGG 0.269651 1_1:+30400632 None:intergenic
TGTTGTTTAAGGTGGGAATT+TGG 0.274976 1_1:-30402605 Msa0018220:intron
TCAGTTAAATTCAGGCATTC+AGG 0.281549 1_1:-30401688 Msa0018220:intron
ACAACTAGTGTTATTTGTTT+AGG 0.284914 1_1:+30400376 None:intergenic
TGTTGAACACTATTGTAAAA+TGG 0.307117 1_1:+30402949 None:intergenic
GCTAATTATGGAGATCAAAA+AGG 0.316814 1_1:-30400420 Msa0018220:CDS
CCAAGGGAAATAAAAGAAAT+TGG 0.316828 1_1:-30402562 Msa0018220:intron
GTTTATAGTGACACTCAAAA+TGG 0.326390 1_1:-30402090 Msa0018220:CDS
TCTCATGAGGTTTATAGTTA+TGG 0.339420 1_1:-30402290 Msa0018220:CDS
GGATGCTTGAATGAAAGATT+TGG 0.362727 1_1:-30402335 Msa0018220:CDS
TGTTTGTTAGGATTATTGTA+TGG 0.365430 1_1:-30402403 Msa0018220:intron
ACCTAAGTTTATGGCTATCA+TGG 0.369497 1_1:+30400590 None:intergenic
CATCATTTGGAAATTTGGTT+TGG 0.377261 1_1:+30400686 None:intergenic
CAAACCAAATTTCCAAATGA+TGG 0.379754 1_1:-30400685 Msa0018220:CDS
GTACCCCACTCACTCCATTA+TGG 0.380599 1_1:+30402971 None:intergenic
TTCAACTTCATGAAACAAAT+AGG 0.381434 1_1:-30400494 Msa0018220:CDS
TGGGAGTTTCAGTTAAATTC+AGG 0.382777 1_1:-30401696 Msa0018220:CDS
GGGAAAGTTGCAGCAGATAA+TGG 0.383947 1_1:-30402123 Msa0018220:CDS
TGAAGTTGAATGTGATTGTT+AGG 0.384096 1_1:+30400507 None:intergenic
TGTTATTAAGTTTGGTTACA+TGG 0.402972 1_1:+30400640 None:intergenic
ATAAATATTATGCAGATTAG+TGG 0.407993 1_1:-30402145 Msa0018220:intron
CCTCTTCAACTTCTTCCAAA+TGG 0.409092 1_1:-30402797 Msa0018220:CDS
CTTTGAAATGAAAGTAATCC+TGG 0.413784 1_1:+30400744 None:intergenic
AAAGTAATCCTGGCATGGTT+TGG 0.415252 1_1:+30400754 None:intergenic
AGGATTATTGTATGGGAAGA+TGG 0.415442 1_1:-30402395 Msa0018220:CDS
AAAAGAGTGGGGAGAGTGTT+GGG 0.415986 1_1:+30402896 None:intergenic
CAGCAGATAATGGTCACAAA+TGG 0.418083 1_1:-30402113 Msa0018220:CDS
CTCTTCAACTTCTTCCAAAT+GGG 0.420849 1_1:-30402796 Msa0018220:CDS
TAAATATTATGCAGATTAGT+GGG 0.421333 1_1:-30402144 Msa0018220:intron
AACTGAAACTCCCATGCCCT+TGG 0.450146 1_1:+30401705 None:intergenic
GCTGTCATTGCTGTCAAAGA+AGG 0.450482 1_1:-30401520 Msa0018220:CDS
GTAATGCATGGATGTTGAAA+TGG 0.457555 1_1:+30400708 None:intergenic
AGCTACCTCCAAACCATGCC+AGG 0.471115 1_1:-30400762 Msa0018220:CDS
TACAACCATAATGGAGTGAG+TGG 0.475355 1_1:-30402976 Msa0018220:five_prime_UTR
GGCTATCATGGAGAAATAGT+TGG 0.477446 1_1:+30400602 None:intergenic
GAAAACAGCATAGACCCATT+TGG 0.478391 1_1:+30402782 None:intergenic
ATTTAACATTAATGAACAAA+AGG 0.480526 1_1:+30400204 None:intergenic
AGCAGATAATGGTCACAAAT+GGG 0.486308 1_1:-30402112 Msa0018220:CDS
GAATGTGAGCAAAGGAAGAA+TGG 0.490985 1_1:-30402356 Msa0018220:CDS
TTTGACAGCAACCAAGGGCA+TGG 0.491667 1_1:-30401716 Msa0018220:intron
ATTAGGCCACCACAATGGTA+TGG 0.496095 1_1:-30400287 Msa0018220:three_prime_UTR
GGCATTGATGTTCCATTCTG+TGG 0.500646 1_1:+30400558 None:intergenic
TTTATAGTGACACTCAAAAT+GGG 0.504799 1_1:-30402089 Msa0018220:CDS
GTTTGTTAGGATTATTGTAT+GGG 0.510760 1_1:-30402402 Msa0018220:intron
GGTTTAAATCATCCACAGAA+TGG 0.513835 1_1:-30400570 Msa0018220:CDS
TCCATGATAGCCATAAACTT+AGG 0.517062 1_1:-30400591 Msa0018220:CDS
GACTTCTCTTGATCGTTCCA+AGG 0.518829 1_1:-30402579 Msa0018220:CDS
AGTATAATGATCACATTTGA+AGG 0.520545 1_1:+30402919 None:intergenic
TTGACAGCAACCAAGGGCAT+GGG 0.522018 1_1:-30401715 Msa0018220:intron
GAGGTTTATAGTTATGGAGA+AGG 0.523360 1_1:-30402284 Msa0018220:CDS
GAACATCAATGCCACCACTT+TGG 0.530008 1_1:-30400548 Msa0018220:CDS
TTAGGCCACCACAATGGTAT+GGG 0.530375 1_1:-30400286 Msa0018220:three_prime_UTR
GTAATCCTGGCATGGTTTGG+AGG 0.532606 1_1:+30400757 None:intergenic
TGTTTAAGGTGGGAATTTGG+AGG 0.535611 1_1:-30402602 Msa0018220:intron
AAATGAAAGTAATCCTGGCA+TGG 0.539286 1_1:+30400749 None:intergenic
GTTTAAGGTGGGAATTTGGA+GGG 0.541664 1_1:-30402601 Msa0018220:intron
AATTATAATTATGAGAGAGA+TGG 0.544464 1_1:-30400330 Msa0018220:three_prime_UTR
AGGTTTATAGTTATGGAGAA+GGG 0.550052 1_1:-30402283 Msa0018220:intron
AAAGAAGGCTTAGTACAACT+TGG 0.558403 1_1:-30401505 Msa0018220:CDS
CCATTTGGAAGAAGTTGAAG+AGG 0.562010 1_1:+30402797 None:intergenic
AAATTTGGTTTGGTAATGCA+TGG 0.564278 1_1:+30400696 None:intergenic
TTGGAAGAAGTTGAAGAGGT+AGG 0.566819 1_1:+30402801 None:intergenic
ATTCTTCAAAATGTCTCATG+AGG 0.574625 1_1:-30402303 Msa0018220:CDS
TGATCAATTGAAGCATTCCA+TGG 0.576323 1_1:+30402045 None:intergenic
ATGCTAACTATGTTGGTCCA+TGG 0.581522 1_1:-30402062 Msa0018220:CDS
ACTTCTCTTGATCGTTCCAA+GGG 0.587449 1_1:-30402578 Msa0018220:CDS
CACAAAGTGAAGATTGAAGA+GGG 0.588802 1_1:-30400456 Msa0018220:CDS
TGTTGAAATGGTATGTGTTG+TGG 0.592823 1_1:+30400720 None:intergenic
ATTTAGTGCTCAACATACAA+AGG 0.592918 1_1:-30400791 Msa0018220:CDS
TGATTGTTAGGCAAAGAAAG+TGG 0.598592 1_1:+30400519 None:intergenic
ACAACTTGGTTCATTTAACA+AGG 0.613113 1_1:-30401491 Msa0018220:intron
TGCAAGAGAGAATGAAGCAA+GGG 0.620819 1_1:+30402852 None:intergenic
AAATATTATGCAGATTAGTG+GGG 0.628220 1_1:-30402143 Msa0018220:intron
GGCCACCACAATGGTATGGG+TGG 0.628616 1_1:-30400283 Msa0018220:three_prime_UTR
GGGTGTGATGCTAACTATGT+TGG 0.633314 1_1:-30402069 Msa0018220:CDS
CCACAAAGTGAAGATTGAAG+AGG 0.636709 1_1:-30400457 Msa0018220:CDS
TTGCAAGAGAGAATGAAGCA+AGG 0.644935 1_1:+30402851 None:intergenic
CAACCATAATGGAGTGAGTG+GGG 0.651877 1_1:-30402974 Msa0018220:five_prime_UTR
ACAACCATAATGGAGTGAGT+GGG 0.662506 1_1:-30402975 Msa0018220:five_prime_UTR
GAAAGTGGAGGTGACCAAAG+TGG 0.664958 1_1:+30400534 None:intergenic
AGTGGAGGTGACCAAAGTGG+TGG 0.667830 1_1:+30400537 None:intergenic
TGCCACCCATACCATTGTGG+TGG 0.687268 1_1:+30400281 None:intergenic
CACGTATCTTTCCTCCACCA+AGG 0.689055 1_1:-30402746 Msa0018220:intron
TTGTTAGGCAAAGAAAGTGG+AGG 0.694470 1_1:+30400522 None:intergenic
ATGTGCCACCCATACCATTG+TGG 0.698050 1_1:+30400278 None:intergenic
CTGGGATTAGGCCACCACAA+TGG 0.700123 1_1:-30400292 Msa0018220:three_prime_UTR
CTTGGTGGAGGAAAGATACG+TGG 0.715762 1_1:+30402747 None:intergenic
TTGTGGTGGCCTAATCCCAG+TGG 0.727420 1_1:+30400295 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTTTTTTTTATAGTAT+AGG - chr1_1:30400491-30400510 Msa0018220:CDS 10.0%
!!! TTTTTTAATTTTGTTACATA+AGG + chr1_1:30402075-30402094 None:intergenic 10.0%
!!! TAATATTTAGTATTTTACCT+TGG + chr1_1:30400436-30400455 None:intergenic 15.0%
!!! AAATCTTATTTTCTTAAACA+TGG + chr1_1:30400944-30400963 None:intergenic 15.0%
!!! ATCAAATTACTATTCATTTT+TGG - chr1_1:30401610-30401629 Msa0018220:intron 15.0%
!! ACTAATGAAATATACATTTA+AGG + chr1_1:30402128-30402147 None:intergenic 15.0%
!! ATTTAACATTAATGAACAAA+AGG + chr1_1:30402961-30402980 None:intergenic 15.0%
!!! AATTGGTAAGTTTTATTTCA+TGG - chr1_1:30400617-30400636 Msa0018220:CDS 20.0%
!!! AGATTTTACTATCTTTTTAG+TGG - chr1_1:30400958-30400977 Msa0018220:intron 20.0%
!!! GATTTTACTATCTTTTTAGT+GGG - chr1_1:30400959-30400978 Msa0018220:intron 20.0%
!! ATAAATATTATGCAGATTAG+TGG - chr1_1:30401017-30401036 Msa0018220:intron 20.0%
!! TAAATATTATGCAGATTAGT+GGG - chr1_1:30401018-30401037 Msa0018220:intron 20.0%
!! CATAATTTACAAAGAAAATG+AGG + chr1_1:30401371-30401390 None:intergenic 20.0%
!!! CTCATTTTCTTTGTAAATTA+TGG - chr1_1:30401369-30401388 Msa0018220:intron 20.0%
!! CTATTTCAATGTTAACTTAT+GGG + chr1_1:30401399-30401418 None:intergenic 20.0%
!! ACTATTTCAATGTTAACTTA+TGG + chr1_1:30401400-30401419 None:intergenic 20.0%
!!! ATAGTAATTTGATAGCATTA+TGG + chr1_1:30401603-30401622 None:intergenic 20.0%
!!! ACGATTTTTTCGAAATATTT+AGG + chr1_1:30402023-30402042 None:intergenic 20.0%
!!! ATCTTTAGTCTGTAATTTTA+TGG + chr1_1:30402192-30402211 None:intergenic 20.0%
!! ATGATTTAAACCTAAGTTTA+TGG + chr1_1:30402584-30402603 None:intergenic 20.0%
!! ACATTTCATATTGCTAATTA+TGG - chr1_1:30402730-30402749 Msa0018220:intron 20.0%
!! AATTATAATTATGAGAGAGA+TGG - chr1_1:30402832-30402851 Msa0018220:CDS 20.0%
! TGTTGAACACTATTGTAAAA+TGG + chr1_1:30400216-30400235 None:intergenic 25.0%
!! TACAATAGTGTTCAACATTT+TGG - chr1_1:30400219-30400238 Msa0018220:three_prime_UTR 25.0%
! AGTATAATGATCACATTTGA+AGG + chr1_1:30400246-30400265 None:intergenic 25.0%
!! TATTTAGTATTTTACCTTGG+TGG + chr1_1:30400433-30400452 None:intergenic 25.0%
!! TGTTTGTTAGGATTATTGTA+TGG - chr1_1:30400759-30400778 Msa0018220:CDS 25.0%
!! GTTTGTTAGGATTATTGTAT+GGG - chr1_1:30400760-30400779 Msa0018220:CDS 25.0%
!!! ATTTTAATGAATGTGAGCAA+AGG - chr1_1:30400798-30400817 Msa0018220:CDS 25.0%
! AAATATTATGCAGATTAGTG+GGG - chr1_1:30401019-30401038 Msa0018220:intron 25.0%
! TTTATAGTGACACTCAAAAT+GGG - chr1_1:30401073-30401092 Msa0018220:intron 25.0%
!! AACATTTAGAATTTGCACAA+AGG + chr1_1:30401202-30401221 None:intergenic 25.0%
! ACACAAAAGTTGTCAAAAAA+TGG + chr1_1:30401283-30401302 None:intergenic 25.0%
!! TCTGTCTTTTATTAGTTAGT+TGG - chr1_1:30401841-30401860 Msa0018220:intron 25.0%
!! TTTCGAAAAAATCGTCATTT+TGG - chr1_1:30402028-30402047 Msa0018220:intron 25.0%
!!! ATTTTGGTCTCTAAATATGT+GGG + chr1_1:30402272-30402291 None:intergenic 25.0%
! TGTTATTAAGTTTGGTTACA+TGG + chr1_1:30402525-30402544 None:intergenic 25.0%
! ATCTTGCATGTTATTAAGTT+TGG + chr1_1:30402533-30402552 None:intergenic 25.0%
! TTCAACTTCATGAAACAAAT+AGG - chr1_1:30402668-30402687 Msa0018220:intron 25.0%
!!! GTGTTATTTGTTTAGGAATT+AGG + chr1_1:30402782-30402801 None:intergenic 25.0%
!!! ACAACTAGTGTTATTTGTTT+AGG + chr1_1:30402789-30402808 None:intergenic 25.0%
!! CTAATGTGCTTTGTTGTTTA+AGG - chr1_1:30400546-30400565 Msa0018220:CDS 30.0%
!! CCAATTTCTTTTATTTCCCT+TGG + chr1_1:30400603-30400622 None:intergenic 30.0%
CCAAGGGAAATAAAAGAAAT+TGG - chr1_1:30400600-30400619 Msa0018220:CDS 30.0%
!!! AATCACACGTTTTGTTTGTT+AGG - chr1_1:30400747-30400766 Msa0018220:CDS 30.0%
ATTCTTCAAAATGTCTCATG+AGG - chr1_1:30400859-30400878 Msa0018220:intron 30.0%
TCTCATGAGGTTTATAGTTA+TGG - chr1_1:30400872-30400891 Msa0018220:intron 30.0%
AGGTTTATAGTTATGGAGAA+GGG - chr1_1:30400879-30400898 Msa0018220:intron 30.0%
GTTTATAGTGACACTCAAAA+TGG - chr1_1:30401072-30401091 Msa0018220:intron 30.0%
ATGCTTCAATTGATCATGTA+AGG - chr1_1:30401124-30401143 Msa0018220:intron 30.0%
TGCTTCAATTGATCATGTAA+GGG - chr1_1:30401125-30401144 Msa0018220:intron 30.0%
! ATTTAGAATTTGCACAAAGG+AGG + chr1_1:30401199-30401218 None:intergenic 30.0%
!! TTAAATTTTGACAGCAACCA+AGG - chr1_1:30401440-30401459 Msa0018220:intron 30.0%
!! TAAATTTTGACAGCAACCAA+GGG - chr1_1:30401441-30401460 Msa0018220:intron 30.0%
ACAACTTGGTTCATTTAACA+AGG - chr1_1:30401671-30401690 Msa0018220:intron 30.0%
!! GCTCATATTTTGAAGGAAAA+AGG + chr1_1:30401704-30401723 None:intergenic 30.0%
! ATATGAGCACAGAACAATTT+TGG - chr1_1:30401716-30401735 Msa0018220:intron 30.0%
!! TTTTGGTCTTTAAATATGCG+CGG - chr1_1:30401733-30401752 Msa0018220:intron 30.0%
TTTGATACGTGTAGAATTCA+AGG - chr1_1:30401943-30401962 Msa0018220:intron 30.0%
TTGATACGTGTAGAATTCAA+GGG - chr1_1:30401944-30401963 Msa0018220:intron 30.0%
TTGCAAGTTTAATACATTCG+TGG - chr1_1:30402230-30402249 Msa0018220:intron 30.0%
!! GATTTTGGTCTCTAAATATG+TGG + chr1_1:30402273-30402292 None:intergenic 30.0%
! ATTTGAGTAGATCGTGATTT+TGG + chr1_1:30402288-30402307 None:intergenic 30.0%
ATTTAGTGCTCAACATACAA+AGG - chr1_1:30402371-30402390 Msa0018220:CDS 30.0%
!! CTTTGAAATGAAAGTAATCC+TGG + chr1_1:30402421-30402440 None:intergenic 30.0%
!! AAATTTGGTTTGGTAATGCA+TGG + chr1_1:30402469-30402488 None:intergenic 30.0%
CATCATTTGGAAATTTGGTT+TGG + chr1_1:30402479-30402498 None:intergenic 30.0%
CAAACCAAATTTCCAAATGA+TGG - chr1_1:30402477-30402496 Msa0018220:intron 30.0%
CTTTCCATCATTTGGAAATT+TGG + chr1_1:30402484-30402503 None:intergenic 30.0%
TGAAGTTGAATGTGATTGTT+AGG + chr1_1:30402658-30402677 None:intergenic 30.0%
GCTAATTATGGAGATCAAAA+AGG - chr1_1:30402742-30402761 Msa0018220:intron 30.0%
TTATGGAGATCAAAAAGGAA+AGG - chr1_1:30402747-30402766 Msa0018220:CDS 30.0%
TTCCATTGTGCAAAAAGAGT+GGG + chr1_1:30400281-30400300 None:intergenic 35.0%
TTTCCATTGTGCAAAAAGAG+TGG + chr1_1:30400282-30400301 None:intergenic 35.0%
! TCTTTTTGCACAATGGAAAG+TGG - chr1_1:30400283-30400302 Msa0018220:three_prime_UTR 35.0%
CTCTTCAACTTCTTCCAAAT+GGG - chr1_1:30400366-30400385 Msa0018220:three_prime_UTR 35.0%
! TTAGTATTTTACCTTGGTGG+AGG + chr1_1:30400430-30400449 None:intergenic 35.0%
!! ATGTGCTTTGTTGTTTAAGG+TGG - chr1_1:30400549-30400568 Msa0018220:CDS 35.0%
!! TGTGCTTTGTTGTTTAAGGT+GGG - chr1_1:30400550-30400569 Msa0018220:CDS 35.0%
! TGTTGTTTAAGGTGGGAATT+TGG - chr1_1:30400557-30400576 Msa0018220:CDS 35.0%
AGGATTATTGTATGGGAAGA+TGG - chr1_1:30400767-30400786 Msa0018220:CDS 35.0%
GGATGCTTGAATGAAAGATT+TGG - chr1_1:30400827-30400846 Msa0018220:intron 35.0%
GAGGTTTATAGTTATGGAGA+AGG - chr1_1:30400878-30400897 Msa0018220:intron 35.0%
! AAACATGGCAAGAAAGTGTA+AGG + chr1_1:30400929-30400948 None:intergenic 35.0%
! AGCAGATAATGGTCACAAAT+GGG - chr1_1:30401050-30401069 Msa0018220:intron 35.0%
! TGATCAATTGAAGCATTCCA+TGG + chr1_1:30401120-30401139 None:intergenic 35.0%
TGGGAGTTTCAGTTAAATTC+AGG - chr1_1:30401466-30401485 Msa0018220:intron 35.0%
TCAGTTAAATTCAGGCATTC+AGG - chr1_1:30401474-30401493 Msa0018220:intron 35.0%
AAAGAAGGCTTAGTACAACT+TGG - chr1_1:30401657-30401676 Msa0018220:intron 35.0%
!! GTTCTGTGCTCATATTTTGA+AGG + chr1_1:30401711-30401730 None:intergenic 35.0%
AAATGAAAGTAATCCTGGCA+TGG + chr1_1:30402416-30402435 None:intergenic 35.0%
TGTTGAAATGGTATGTGTTG+TGG + chr1_1:30402445-30402464 None:intergenic 35.0%
GTAATGCATGGATGTTGAAA+TGG + chr1_1:30402457-30402476 None:intergenic 35.0%
CTTCATTGCTTTCCATCATT+TGG + chr1_1:30402492-30402511 None:intergenic 35.0%
TCCATGATAGCCATAAACTT+AGG - chr1_1:30402571-30402590 Msa0018220:CDS 35.0%
ACCTAAGTTTATGGCTATCA+TGG + chr1_1:30402575-30402594 None:intergenic 35.0%
GGTTTAAATCATCCACAGAA+TGG - chr1_1:30402592-30402611 Msa0018220:CDS 35.0%
TGATTGTTAGGCAAAGAAAG+TGG + chr1_1:30402646-30402665 None:intergenic 35.0%
CACAAAGTGAAGATTGAAGA+GGG - chr1_1:30402706-30402725 Msa0018220:intron 35.0%
! ATGGTTGTATTTTGTACCAC+TGG - chr1_1:30402851-30402870 Msa0018220:CDS 35.0%
! TGGTTGTATTTTGTACCACT+GGG - chr1_1:30402852-30402871 Msa0018220:CDS 35.0%
! TATTTTGTACCACTGGGATT+AGG - chr1_1:30402858-30402877 Msa0018220:CDS 35.0%
! TACAACCATAATGGAGTGAG+TGG - chr1_1:30400186-30400205 Msa0018220:three_prime_UTR 40.0%
! ACAACCATAATGGAGTGAGT+GGG - chr1_1:30400187-30400206 Msa0018220:three_prime_UTR 40.0%
TCCATTGTGCAAAAAGAGTG+GGG + chr1_1:30400280-30400299 None:intergenic 40.0%
TGCAAGAGAGAATGAAGCAA+GGG + chr1_1:30400313-30400332 None:intergenic 40.0%
TTGCAAGAGAGAATGAAGCA+AGG + chr1_1:30400314-30400333 None:intergenic 40.0%
TTGGAAGAAGTTGAAGAGGT+AGG + chr1_1:30400364-30400383 None:intergenic 40.0%
CCATTTGGAAGAAGTTGAAG+AGG + chr1_1:30400368-30400387 None:intergenic 40.0%
CCTCTTCAACTTCTTCCAAA+TGG - chr1_1:30400365-30400384 Msa0018220:three_prime_UTR 40.0%
GAAAACAGCATAGACCCATT+TGG + chr1_1:30400383-30400402 None:intergenic 40.0%
!!! AATGGGTCTATGCTGTTTTC+TGG - chr1_1:30400383-30400402 Msa0018220:exon 40.0%
! TGTTTAAGGTGGGAATTTGG+AGG - chr1_1:30400560-30400579 Msa0018220:CDS 40.0%
! GTTTAAGGTGGGAATTTGGA+GGG - chr1_1:30400561-30400580 Msa0018220:CDS 40.0%
ACTTCTCTTGATCGTTCCAA+GGG - chr1_1:30400584-30400603 Msa0018220:CDS 40.0%
GAATGTGAGCAAAGGAAGAA+TGG - chr1_1:30400806-30400825 Msa0018220:CDS 40.0%
! CAGCAGATAATGGTCACAAA+TGG - chr1_1:30401049-30401068 Msa0018220:intron 40.0%
ATGCTAACTATGTTGGTCCA+TGG - chr1_1:30401100-30401119 Msa0018220:intron 40.0%
! ATTCAGGCATTCAGGTTAGT+TGG - chr1_1:30401482-30401501 Msa0018220:intron 40.0%
! TTCAGGCATTCAGGTTAGTT+GGG - chr1_1:30401483-30401502 Msa0018220:intron 40.0%
TTTCAGTCCTCAATTGTGTG+AGG + chr1_1:30401987-30402006 None:intergenic 40.0%
GTGTCTATGCTAAGTCAGTT+TGG - chr1_1:30402101-30402120 Msa0018220:CDS 40.0%
TGGTCTCTAAATATGTGGGT+CGG + chr1_1:30402268-30402287 None:intergenic 40.0%
AAAGTAATCCTGGCATGGTT+TGG + chr1_1:30402411-30402430 None:intergenic 40.0%
GGCTATCATGGAGAAATAGT+TGG + chr1_1:30402563-30402582 None:intergenic 40.0%
TTGTTAGGCAAAGAAAGTGG+AGG + chr1_1:30402643-30402662 None:intergenic 40.0%
CCTCTTCAATCTTCACTTTG+TGG + chr1_1:30402708-30402727 None:intergenic 40.0%
CCACAAAGTGAAGATTGAAG+AGG - chr1_1:30402705-30402724 Msa0018220:intron 40.0%
GAGATCAAAAAGGAAAGGCA+GGG - chr1_1:30402752-30402771 Msa0018220:CDS 40.0%
! CAACCATAATGGAGTGAGTG+GGG - chr1_1:30400188-30400207 Msa0018220:three_prime_UTR 45.0%
!! AAAAGAGTGGGGAGAGTGTT+GGG + chr1_1:30400269-30400288 None:intergenic 45.0%
! AAAAAGAGTGGGGAGAGTGT+TGG + chr1_1:30400270-30400289 None:intergenic 45.0%
! TCCCCACTCTTTTTGCACAA+TGG - chr1_1:30400276-30400295 Msa0018220:three_prime_UTR 45.0%
!!! GGTCTATGCTGTTTTCTGGA+GGG - chr1_1:30400387-30400406 Msa0018220:exon 45.0%
GACTTCTCTTGATCGTTCCA+AGG - chr1_1:30400583-30400602 Msa0018220:CDS 45.0%
GGGAAAGTTGCAGCAGATAA+TGG - chr1_1:30401039-30401058 Msa0018220:intron 45.0%
GGGTGTGATGCTAACTATGT+TGG - chr1_1:30401093-30401112 Msa0018220:intron 45.0%
GCTGTCATTGCTGTCAAAGA+AGG - chr1_1:30401642-30401661 Msa0018220:intron 45.0%
AACAGTGCCTCACACAATTG+AGG - chr1_1:30401977-30401996 Msa0018220:intron 45.0%
!! GGCATTGATGTTCCATTCTG+TGG + chr1_1:30402607-30402626 None:intergenic 45.0%
GAACATCAATGCCACCACTT+TGG - chr1_1:30402614-30402633 Msa0018220:intron 45.0%
GGAGATCAAAAAGGAAAGGC+AGG - chr1_1:30402751-30402770 Msa0018220:CDS 45.0%
ATCAAAAAGGAAAGGCAGGG+TGG - chr1_1:30402755-30402774 Msa0018220:CDS 45.0%
ATTAGGCCACCACAATGGTA+TGG - chr1_1:30402875-30402894 Msa0018220:exon 45.0%
TTAGGCCACCACAATGGTAT+GGG - chr1_1:30402876-30402895 Msa0018220:exon 45.0%
! TGGGTGGCACATTTTATGTG+TGG - chr1_1:30402895-30402914 Msa0018220:five_prime_UTR 45.0%
GTACCCCACTCACTCCATTA+TGG + chr1_1:30400194-30400213 None:intergenic 50.0%
!!! GGGTCTATGCTGTTTTCTGG+AGG - chr1_1:30400386-30400405 Msa0018220:exon 50.0%
CTTGGTGGAGGAAAGATACG+TGG + chr1_1:30400418-30400437 None:intergenic 50.0%
CACGTATCTTTCCTCCACCA+AGG - chr1_1:30400416-30400435 Msa0018220:CDS 50.0%
TTTGACAGCAACCAAGGGCA+TGG - chr1_1:30401446-30401465 Msa0018220:intron 50.0%
! TTGACAGCAACCAAGGGCAT+GGG - chr1_1:30401447-30401466 Msa0018220:intron 50.0%
AACTGAAACTCCCATGCCCT+TGG + chr1_1:30401460-30401479 None:intergenic 50.0%
! GTAATCCTGGCATGGTTTGG+AGG + chr1_1:30402408-30402427 None:intergenic 50.0%
GAAAGTGGAGGTGACCAAAG+TGG + chr1_1:30402631-30402650 None:intergenic 50.0%
ATGTGCCACCCATACCATTG+TGG + chr1_1:30402887-30402906 None:intergenic 50.0%
AGCTACCTCCAAACCATGCC+AGG - chr1_1:30402400-30402419 Msa0018220:intron 55.0%
AGTGGAGGTGACCAAAGTGG+TGG + chr1_1:30402628-30402647 None:intergenic 55.0%
TTGTGGTGGCCTAATCCCAG+TGG + chr1_1:30402870-30402889 None:intergenic 55.0%
CTGGGATTAGGCCACCACAA+TGG - chr1_1:30402870-30402889 Msa0018220:CDS 55.0%
TGCCACCCATACCATTGTGG+TGG + chr1_1:30402884-30402903 None:intergenic 55.0%
GGCCACCACAATGGTATGGG+TGG - chr1_1:30402879-30402898 Msa0018220:exon 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 30400178 30403006 30400178 ID=Msa0018220;Name=Msa0018220
chr1_1 mRNA 30400178 30403006 30400178 ID=Msa0018220-mRNA-1;Parent=Msa0018220;Name=Msa0018220-mRNA-1;_AED=0.25;_eAED=0.25;_QI=117|1|1|1|1|1|7|223|321
chr1_1 exon 30400178 30400829 30400178 ID=Msa0018220-mRNA-1:exon:10176;Parent=Msa0018220-mRNA-1
chr1_1 exon 30401492 30401548 30401492 ID=Msa0018220-mRNA-1:exon:10175;Parent=Msa0018220-mRNA-1
chr1_1 exon 30401689 30401730 30401689 ID=Msa0018220-mRNA-1:exon:10174;Parent=Msa0018220-mRNA-1
chr1_1 exon 30402044 30402152 30402044 ID=Msa0018220-mRNA-1:exon:10173;Parent=Msa0018220-mRNA-1
chr1_1 exon 30402284 30402415 30402284 ID=Msa0018220-mRNA-1:exon:10172;Parent=Msa0018220-mRNA-1
chr1_1 exon 30402563 30402616 30402563 ID=Msa0018220-mRNA-1:exon:10171;Parent=Msa0018220-mRNA-1
chr1_1 exon 30402747 30403006 30402747 ID=Msa0018220-mRNA-1:exon:10170;Parent=Msa0018220-mRNA-1
chr1_1 five_prime_UTR 30402890 30403006 30402890 ID=Msa0018220-mRNA-1:five_prime_utr;Parent=Msa0018220-mRNA-1
chr1_1 CDS 30402747 30402889 30402747 ID=Msa0018220-mRNA-1:cds;Parent=Msa0018220-mRNA-1
chr1_1 CDS 30402563 30402616 30402563 ID=Msa0018220-mRNA-1:cds;Parent=Msa0018220-mRNA-1
chr1_1 CDS 30402284 30402415 30402284 ID=Msa0018220-mRNA-1:cds;Parent=Msa0018220-mRNA-1
chr1_1 CDS 30402044 30402152 30402044 ID=Msa0018220-mRNA-1:cds;Parent=Msa0018220-mRNA-1
chr1_1 CDS 30401689 30401730 30401689 ID=Msa0018220-mRNA-1:cds;Parent=Msa0018220-mRNA-1
chr1_1 CDS 30401492 30401548 30401492 ID=Msa0018220-mRNA-1:cds;Parent=Msa0018220-mRNA-1
chr1_1 CDS 30400401 30400829 30400401 ID=Msa0018220-mRNA-1:cds;Parent=Msa0018220-mRNA-1
chr1_1 three_prime_UTR 30400178 30400400 30400178 ID=Msa0018220-mRNA-1:three_prime_utr;Parent=Msa0018220-mRNA-1
Gene Sequence

>Msa0018220

ATGGAAAGTGGATTACCCTTGCTTCATTCTCTCTTGCAACATACTCTAAGAAACTTATGCTCATTTCCTACCTCTTCAACTTCTTCCAAATGGGTCTATGCTGTTTTCTGGAGGGTAGTACCACGTATCTTTCCTCCACCAAGGTGGGAATTTGGAGGGACTTCTCTTGATCGTTCCAAGGGAAATAAAAGAAATTGGATTATTGTATGGGAAGATGGATTCTGTGATTTTAATGAATGTGAGCAAAGGAAGAATGGATGCTTGAATGAAAGATTTGGAGCTGATGTATTCTTCAAAATGTCTCATGAGGTTTATAGTTATGGAGAAGGATTAGTGGGGAAAGTTGCAGCAGATAATGGTCACAAATGGGTTTATAGTGACACTCAAAATGGGTGTGATGCTAACTATGTTGGTCCATGGAATGCTTCAATTGATCATCAACCAAGGGCATGGGAGTTTCAGTTAAATTCAGGCATTCAGACTATTGCTGTCATTGCTGTCAAAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGATTGCAGAAGATCTTGATTTAGTGCTCAACATACAAAGGAAATTCAGCTACCTCCAAACCATGCCAGGATTACTTTCATTTCAAAGACCACAACACATACCATTTCAACATCCATGCATTACCAAACCAAATTTCCAAATGATGGAAAGCAATGAAGTTTCTAAGAACCATGTAACCAAACTTAATAACATGCAAGATGAAAGATCCAACTATTTCTCCATGATAGCCATAAACTTAGGTTTAAATCATCCACAGAATGGAACATCAATGCCACCACTTTGGTCACCTCCACTTTCTTTGCCTAACAATCACATTCAACTTCATGAAACAAATAGGATCAATAACACAAGCCACAAAGTGAAGATTGAAGAGGGCACATTTCATATTGCTAATTATGGAGATCAAAAAGGAAAGGCAGGGTGGTCCTAA

Protein sequence

>Msa0018220

MESGLPLLHSLLQHTLRNLCSFPTSSTSSKWVYAVFWRVVPRIFPPPRWEFGGTSLDRSKGNKRNWIIVWEDGFCDFNECEQRKNGCLNERFGADVFFKMSHEVYSYGEGLVGKVAADNGHKWVYSDTQNGCDANYVGPWNASIDHQPRAWEFQLNSGIQTIAVIAVKEGLVQLGSFNKIAEDLDLVLNIQRKFSYLQTMPGLLSFQRPQHIPFQHPCITKPNFQMMESNEVSKNHVTKLNNMQDERSNYFSMIAINLGLNHPQNGTSMPPLWSPPLSLPNNHIQLHETNRINNTSHKVKIEEGTFHIANYGDQKGKAGWS*