AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1178160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178160 MtrunA17_Chr8g0349091 97.668 343 8 0 1 343 1 343 0.0 676
Msa1178160 MtrunA17_Chr7g0247431 61.143 350 125 10 1 343 1 346 7.08e-114 334
Msa1178160 MtrunA17_Chr5g0397551 44.220 346 165 9 1 343 1 321 2.19e-75 235
Msa1178160 MtrunA17_Chr8g0386741 44.847 359 174 11 1 343 1 351 1.58e-68 218
Msa1178160 MtrunA17_Chr1g0179461 50.935 214 94 4 89 291 69 282 2.87e-59 195
Msa1178160 MtrunA17_Chr4g0054661 51.042 192 78 4 89 271 73 257 2.38e-51 174
Msa1178160 MtrunA17_Chr7g0245841 46.460 226 108 3 89 311 60 275 2.70e-51 173
Msa1178160 MtrunA17_Chr4g0056761 50.000 214 98 4 78 283 61 273 2.40e-50 171
Msa1178160 MtrunA17_Chr8g0351761 49.268 205 98 2 88 286 70 274 1.74e-47 164
Msa1178160 MtrunA17_Chr1g0188211 42.578 256 120 8 89 320 49 301 6.51e-45 157
Msa1178160 MtrunA17_Chr5g0398621 41.379 203 98 3 87 283 44 231 2.31e-41 144
Msa1178160 MtrunA17_Chr6g0476061 40.845 213 108 6 85 283 47 255 3.58e-34 127
Msa1178160 MtrunA17_Chr1g0165101 39.819 221 101 6 90 291 86 293 1.82e-33 127
Msa1178160 MtrunA17_Chr7g0274821 43.500 200 102 3 86 282 71 262 8.47e-31 119
Msa1178160 MtrunA17_Chr1g0190011 40.860 186 100 4 89 270 43 222 2.24e-30 117
Msa1178160 MtrunA17_Chr4g0027371 50.806 124 58 2 150 270 14 137 8.53e-29 111
Msa1178160 MtrunA17_Chr4g0027351 48.800 125 61 2 144 267 8 130 1.80e-28 107
Msa1178160 MtrunA17_Chr4g0027331 48.387 124 61 2 144 264 8 131 7.53e-28 105
Msa1178160 MtrunA17_Chr4g0027301 41.935 124 69 2 147 267 18 141 5.78e-22 90.5
Msa1178160 MtrunA17_Chr3g0133051 38.000 150 89 2 122 270 71 217 3.08e-21 92.0
Msa1178160 MtrunA17_Chr5g0417581 36.170 141 74 3 145 270 9 148 2.79e-20 87.4
Msa1178160 MtrunA17_Chr6g0476241 36.275 204 107 9 89 288 120 304 2.40e-18 84.3
Msa1178160 MtrunA17_Chr1g0168121 40.411 146 81 3 125 270 42 181 1.18e-17 81.6
Msa1178160 MtrunA17_Chr3g0086021 45.946 111 54 3 167 274 118 225 6.82e-17 80.1
Msa1178160 MtrunA17_Chr5g0427311 36.508 126 78 2 146 270 71 195 3.57e-16 77.0
Msa1178160 MtrunA17_Chr5g0400531 41.860 129 61 5 90 210 121 243 1.16e-15 75.9
Msa1178160 MtrunA17_Chr8g0351651 36.242 149 89 2 122 270 83 225 1.22e-15 76.6
Msa1178160 MtrunA17_Chr5g0398531 37.162 148 87 2 123 270 98 239 1.27e-15 76.6
Msa1178160 MtrunA17_Chr1g0190051 38.182 165 94 4 125 289 74 230 3.36e-15 75.1
Msa1178160 MtrunA17_Chr3g0112131 40.800 125 71 2 146 270 97 218 3.92e-15 75.1
Msa1178160 MtrunA17_Chr5g0443311 31.776 214 134 5 122 329 48 255 9.28e-15 73.2
Msa1178160 MtrunA17_Chr4g0054651 39.200 125 73 1 146 270 94 215 1.88e-12 67.0
Msa1178160 MtrunA17_Chr7g0250031 38.400 125 74 1 146 270 75 196 1.61e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178160 AT2G45850.1 53.782 357 142 10 1 343 1 348 9.66e-99 296
Msa1178160 AT2G45850.2 53.782 357 142 10 1 343 1 348 9.66e-99 296
Msa1178160 AT3G61310.1 49.036 363 156 10 1 343 1 354 2.37e-83 257
Msa1178160 AT2G45850.3 55.124 283 108 7 1 270 1 277 2.82e-75 233
Msa1178160 AT2G33620.1 50.794 252 98 9 75 319 82 314 7.20e-67 214
Msa1178160 AT2G33620.4 50.794 252 98 9 75 319 82 314 7.20e-67 214
Msa1178160 AT2G33620.2 50.794 252 98 9 75 319 82 314 7.20e-67 214
Msa1178160 AT2G33620.3 50.794 252 98 9 75 319 82 314 7.20e-67 214
Msa1178160 AT4G12080.1 44.928 276 117 6 89 340 89 353 1.59e-66 214
Msa1178160 AT1G63470.1 44.718 284 118 7 89 343 105 378 5.75e-63 205
Msa1178160 AT1G63480.5 45.725 269 126 7 89 343 93 355 7.39e-62 201
Msa1178160 AT1G63480.7 45.725 269 126 7 89 343 93 355 7.39e-62 201
Msa1178160 AT1G63480.4 45.725 269 126 7 89 343 93 355 7.39e-62 201
Msa1178160 AT1G63480.3 45.725 269 126 7 89 343 93 355 7.39e-62 201
Msa1178160 AT1G63480.6 45.725 269 126 7 89 343 93 355 7.39e-62 201
Msa1178160 AT1G63480.2 45.725 269 126 7 89 343 99 361 1.12e-61 201
Msa1178160 AT1G63480.1 45.725 269 126 7 89 343 99 361 1.12e-61 201
Msa1178160 AT4G25320.1 47.619 210 96 3 83 278 80 289 8.84e-55 184
Msa1178160 AT4G17950.1 48.869 221 77 5 89 278 131 346 2.05e-54 184
Msa1178160 AT5G46640.1 52.885 208 76 3 88 278 101 303 1.87e-53 181
Msa1178160 AT4G22770.2 42.537 268 123 7 87 335 70 325 1.33e-51 174
Msa1178160 AT4G22770.1 42.537 268 123 7 87 335 70 325 1.33e-51 174
Msa1178160 AT5G51590.1 43.694 222 85 4 89 273 78 296 2.30e-46 163
Msa1178160 AT5G62260.1 41.850 227 111 5 77 283 63 288 3.30e-46 162
Msa1178160 AT5G62260.3 41.850 227 111 5 77 283 63 288 3.30e-46 162
Msa1178160 AT4G00200.2 50.000 206 78 4 77 271 48 239 2.44e-45 157
Msa1178160 AT4G00200.1 50.000 206 78 4 77 271 48 239 2.44e-45 157
Msa1178160 AT5G62260.2 42.326 215 103 5 77 271 63 276 9.96e-44 152
Msa1178160 AT3G04590.1 40.952 210 93 5 77 272 93 285 1.43e-36 134
Msa1178160 AT3G04590.2 41.206 199 104 3 77 270 93 283 1.10e-35 134
Msa1178160 AT2G36560.1 43.089 123 67 3 152 272 102 223 4.03e-22 97.8
Msa1178160 AT3G60870.1 36.170 188 96 6 89 270 27 196 1.33e-19 87.4
Msa1178160 AT4G14465.1 44.340 106 56 1 118 223 60 162 1.45e-19 87.8
Msa1178160 AT5G49700.1 32.203 177 111 4 122 294 53 224 7.00e-19 85.5
Msa1178160 AT1G76500.1 35.329 167 93 3 113 270 60 220 1.03e-17 82.8
Msa1178160 AT2G42940.1 40.000 150 84 3 122 271 50 193 7.20e-16 76.6
Msa1178160 AT2G45430.1 35.632 174 102 4 122 291 86 253 1.59e-15 76.6
Msa1178160 AT5G28590.1 37.313 134 58 2 149 282 24 131 6.07e-15 73.6
Msa1178160 AT1G14490.2 29.897 194 117 5 106 291 11 193 3.25e-14 71.6
Msa1178160 AT4G12050.1 40.000 150 83 4 122 270 115 258 3.97e-14 72.8
Msa1178160 AT3G04570.1 37.888 161 86 4 118 270 73 227 4.89e-14 72.4
Msa1178160 AT3G55560.1 40.800 125 72 1 146 270 106 228 8.02e-14 71.6
Msa1178160 AT1G14490.1 31.034 174 107 4 126 291 6 174 1.18e-13 69.3
Msa1178160 AT4G22810.1 37.500 152 86 3 122 270 102 247 1.38e-13 71.2
Msa1178160 AT1G20900.1 37.647 170 85 4 110 270 77 234 1.49e-12 67.8
Msa1178160 AT2G35270.1 35.811 148 89 2 123 270 76 217 2.01e-12 67.4
Msa1178160 AT4G35390.1 36.486 148 86 3 125 270 63 204 6.49e-11 62.8

Find 151 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCATTCTTCTTGTTCT+TGG 0.101201 8_1:+10807925 None:intergenic
GGCGCCCTCGACCGCGTTTC+TGG 0.107198 8_1:+10812286 None:intergenic
ATCAATGTAGGTGCTCCTTC+TGG 0.171915 8_1:-10812441 Msa1178160:CDS
GTGACTCGGGCTTGAAGTTC+TGG 0.189996 8_1:-10807417 Msa1178160:three_prime_UTR
TAGAATTCTTTCTTGACTTT+TGG 0.210221 8_1:-10807613 Msa1178160:three_prime_UTR
TTTGGATTGCTGAATATTAA+AGG 0.220950 8_1:-10812728 Msa1178160:five_prime_UTR
CTTTGTCAGGCTTCGACATC+TGG 0.233098 8_1:-10809151 Msa1178160:CDS
CTCCAACATCTCTCAATTCT+TGG 0.272580 8_1:-10807808 Msa1178160:CDS
CGCGGTCGAGGGCGCCCTCC+AGG 0.273094 8_1:-10812279 Msa1178160:CDS
CGTGGAAGGCCTAGAAAATA+TGG 0.274820 8_1:-10812381 Msa1178160:CDS
TGGACTTGCGGTACTGTTCC+AGG 0.293188 8_1:+10812306 None:intergenic
CAGAGATAGGTGGTAAAGTT+TGG 0.303279 8_1:-10812746 Msa1178160:five_prime_UTR
TCAATGTAGGTGCTCCTTCT+GGG 0.321161 8_1:-10812440 Msa1178160:CDS
CCGATGGATTCTTCTGGAAT+TGG 0.331532 8_1:-10812474 Msa1178160:CDS
GTATACATATTTAAGATTCA+TGG 0.337930 8_1:-10807691 Msa1178160:three_prime_UTR
CGAGGGCGCCCTCCAGGGTC+CGG 0.339305 8_1:-10812273 Msa1178160:CDS
AAATGTTCAACGGTTTCATA+TGG 0.341273 8_1:+10813830 None:intergenic
TTAAATATGTATACCAATAC+TGG 0.348358 8_1:+10807700 None:intergenic
AAACAACAGTTGGCTTCTTT+CGG 0.348817 8_1:-10812246 Msa1178160:intron
CTATGGTTGATTGACTTTAG+AGG 0.353332 8_1:-10807573 Msa1178160:three_prime_UTR
AATGGAAATAATCTTGTTAG+AGG 0.356808 8_1:+10807385 None:intergenic
TTTGTCATTAGATTGTTTCA+TGG 0.362020 8_1:-10807346 Msa1178160:three_prime_UTR
TAGCCTGACGGGCTCTTACT+TGG 0.364205 8_1:-10808680 Msa1178160:CDS
CTCTACTGTGACACTTTGTC+AGG 0.364472 8_1:-10809164 Msa1178160:CDS
CATGACTATCAGGTGATAAT+CGG 0.364976 8_1:-10807974 Msa1178160:intron
CTAACAAGATTATTTCCATT+AGG 0.370329 8_1:-10807382 Msa1178160:three_prime_UTR
CAGACAGGATTACCTGGTTC+TGG 0.372755 8_1:-10812600 Msa1178160:CDS
GGATGGCTTGCTGGTGTTGT+TGG 0.373412 8_1:+10812327 None:intergenic
ATCTCTAGTTCAGCTGGAAA+TGG 0.373990 8_1:-10810047 Msa1178160:CDS
GTGGCTGATCTTCGACAATA+TGG 0.375316 8_1:-10807439 Msa1178160:three_prime_UTR
ACTGTTCCAGGATGGCTTGC+TGG 0.379267 8_1:+10812318 None:intergenic
AGGCCTTCCACGCTTCCTTT+TGG 0.379855 8_1:+10812392 None:intergenic
CATTGCTGCAAGTCCTGTTC+AGG 0.396488 8_1:-10808557 Msa1178160:intron
GCATTAAATCAATGTCCATA+TGG 0.398657 8_1:+10807753 None:intergenic
TTGGATTGCTGAATATTAAA+GGG 0.401920 8_1:-10812727 Msa1178160:five_prime_UTR
GACCAAATGGCGGCATTATC+CGG 0.406280 8_1:-10812642 Msa1178160:CDS
GATGATTTATTTCTAAATCC+AGG 0.406706 8_1:-10807301 Msa1178160:three_prime_UTR
ACTTGATTGAAACGATGAAT+TGG 0.406986 8_1:+10812530 None:intergenic
GACATAACAAATATAGTTCT+AGG 0.411478 8_1:+10809202 None:intergenic
CATGTCATCTCCATTGCAAT+TGG 0.414837 8_1:-10810014 Msa1178160:CDS
GAAATGCTATTCATTGCAAC+TGG 0.419844 8_1:+10807848 None:intergenic
AGAATAGCAGTTACCTGAAC+AGG 0.423912 8_1:+10808544 None:intergenic
AGTCCTGATGGTCGTGTCAT+TGG 0.425886 8_1:-10808601 Msa1178160:CDS
ATTGGTGGTGGTGGTACTAT+TGG 0.430130 8_1:-10812507 Msa1178160:CDS
AAAATTGCAAGATCTCCTAA+TGG 0.432298 8_1:+10807367 None:intergenic
TTTGAAACAAAACCCGGTCT+AGG 0.440307 8_1:+10807273 None:intergenic
TTTGTCAGGCTTCGACATCT+GGG 0.444025 8_1:-10809150 Msa1178160:CDS
TCATCGTTTCAATCAAGTAT+TGG 0.453396 8_1:-10812525 Msa1178160:CDS
GTTGGAGTCAGACTTTGATT+TGG 0.457634 8_1:+10807824 None:intergenic
TTGGCCTGCATCGCGTCCAT+TGG 0.459716 8_1:-10807789 Msa1178160:CDS
TTATTAGCATACACCAGTAT+TGG 0.464929 8_1:-10807713 Msa1178160:three_prime_UTR
AACCGGATAATGCCGCCATT+TGG 0.465036 8_1:+10812640 None:intergenic
CAACCAAGTAAGAGCCCGTC+AGG 0.465611 8_1:+10808677 None:intergenic
CATAAAGTATGATGCAGAAC+CGG 0.471132 8_1:+10812623 None:intergenic
GAGGGCGCCCTCCAGGGTCC+GGG 0.478636 8_1:-10812272 Msa1178160:CDS
GTATTCAGCGGACGAATACC+AGG 0.479562 8_1:+10812552 None:intergenic
ACGATGCCGATGGATTCTTC+TGG 0.481478 8_1:-10812480 Msa1178160:CDS
TGACTCGGGCTTGAAGTTCT+GGG 0.482519 8_1:-10807416 Msa1178160:three_prime_UTR
GCATCATACTTTATGCAGAC+AGG 0.483568 8_1:-10812615 Msa1178160:CDS
CAAGTCCAGAAACGCGGTCG+AGG 0.487055 8_1:-10812291 Msa1178160:CDS
GGTTTGATCTCTAGTTCAGC+TGG 0.488171 8_1:-10810053 Msa1178160:CDS
CATTAAATCAATGTCCATAT+GGG 0.490752 8_1:+10807754 None:intergenic
CAATCAAGTATTGGTGGTGG+TGG 0.492198 8_1:-10812516 Msa1178160:CDS
ACAACACCAGCAAGCCATCC+TGG 0.492885 8_1:-10812324 Msa1178160:CDS
ATATCCAATGGACGCGATGC+AGG 0.493146 8_1:+10807785 None:intergenic
AATGTTCAACGGTTTCATAT+GGG 0.496185 8_1:+10813831 None:intergenic
CCACCAATGACACGACCATC+AGG 0.497274 8_1:+10808598 None:intergenic
ATGATTTATTTCTAAATCCA+GGG 0.498190 8_1:-10807300 Msa1178160:three_prime_UTR
GGCCAAGAATTGAGAGATGT+TGG 0.498691 8_1:+10807806 None:intergenic
GATGGCTCGCGTAATCGAAC+GGG 0.499725 8_1:-10808646 Msa1178160:CDS
GGGAATTATGCAATTCATGT+TGG 0.500890 8_1:+10812574 None:intergenic
TCATGTTGGTTTCCAGAACC+AGG 0.501139 8_1:+10812588 None:intergenic
ATCAATGAGATTAGCAGAAG+TGG 0.502808 8_1:-10807458 Msa1178160:three_prime_UTR
GGGGAATTAAAGAGAGATGA+TGG 0.503265 8_1:+10813851 None:intergenic
CGTGTCATTGGTGGAGGCGT+CGG 0.504210 8_1:-10808589 Msa1178160:CDS
CGGGCTTGAAGTTCTGGGAG+AGG 0.508371 8_1:-10807411 Msa1178160:three_prime_UTR
GTGGAAGGCCTAGAAAATAT+GGG 0.512348 8_1:-10812380 Msa1178160:CDS
GTTTCTCTTGCCAGTCCTGA+TGG 0.512425 8_1:-10808613 Msa1178160:CDS
GGATATGCGTAATTCCCATA+TGG 0.512750 8_1:-10807768 Msa1178160:CDS
GGATCTCAATGTATCAATGT+AGG 0.515058 8_1:-10812453 Msa1178160:CDS
TGATAATCGGGAGCTTTATG+TGG 0.516440 8_1:-10807961 Msa1178160:CDS
ATGACTATCAGGTGATAATC+GGG 0.516769 8_1:-10807973 Msa1178160:intron
CAATGTAGGTGCTCCTTCTG+GGG 0.519453 8_1:-10812439 Msa1178160:CDS
GGGGCTTGAATTTAAATGCA+TGG 0.521445 8_1:-10812673 Msa1178160:exon
CACAGTAGAGACAGCACCAT+TGG 0.523000 8_1:+10809177 None:intergenic
CAACCGGTGAACCTGCCAAA+AGG 0.524135 8_1:-10812407 Msa1178160:CDS
GCGGTCGAGGGCGCCCTCCA+GGG 0.524809 8_1:-10812278 Msa1178160:CDS
CCTGATGGTCGTGTCATTGG+TGG 0.525149 8_1:-10808598 Msa1178160:CDS
CATGGATCGAGGGGACCAAA+TGG 0.527963 8_1:-10812655 Msa1178160:CDS
AATTTAAATGCATGGATCGA+GGG 0.528702 8_1:-10812665 Msa1178160:exon
AATCCAGGGAAAACCTAGAC+CGG 0.528849 8_1:-10807286 Msa1178160:three_prime_UTR
GATTCAGAAGATCAAGAAGT+TGG 0.530546 8_1:-10807905 Msa1178160:CDS
TTGTCAGGCTTCGACATCTG+GGG 0.533182 8_1:-10809149 Msa1178160:CDS
CTGCCAAAAGGAAGCGTGGA+AGG 0.533300 8_1:-10812395 Msa1178160:CDS
CCTAGAAAATATGGGGCAGA+TGG 0.536022 8_1:-10812372 Msa1178160:CDS
TAGAACTATATTTGTTATGT+CGG 0.537936 8_1:-10809200 Msa1178160:CDS
AGATCAAGAAGTTGGTGTAG+AGG 0.538029 8_1:-10807897 Msa1178160:CDS
TTTGAGATACTTAGCCTGAC+GGG 0.538140 8_1:-10808691 Msa1178160:CDS
GTCATTGGTGGAGGCGTCGG+TGG 0.538671 8_1:-10808586 Msa1178160:CDS
TTGTTGTCAAAGATTGTGAA+GGG 0.543171 8_1:-10812693 Msa1178160:five_prime_UTR
TTTGTTGTCAAAGATTGTGA+AGG 0.545465 8_1:-10812694 Msa1178160:five_prime_UTR
ATCGGGAGCTTTATGTGGGG+TGG 0.551191 8_1:-10807956 Msa1178160:CDS
GAATTTAAATGCATGGATCG+AGG 0.552782 8_1:-10812666 Msa1178160:exon
ATGTTCAACGGTTTCATATG+GGG 0.554495 8_1:+10813832 None:intergenic
ATATTTGTTATGTCGGCCAA+TGG 0.560132 8_1:-10809193 Msa1178160:CDS
CTTCGACAATATGGTGACTC+GGG 0.563104 8_1:-10807430 Msa1178160:three_prime_UTR
CATGAATTGCATAATTCCCC+TGG 0.566365 8_1:-10812570 Msa1178160:CDS
GATAATCGGGAGCTTTATGT+GGG 0.567733 8_1:-10807960 Msa1178160:CDS
TCGTTTCAATCAAGTATTGG+TGG 0.568199 8_1:-10812522 Msa1178160:CDS
AAGTCCAGAAACGCGGTCGA+GGG 0.568708 8_1:-10812290 Msa1178160:CDS
TTTATGCAGACAGGATTACC+TGG 0.569431 8_1:-10812606 Msa1178160:CDS
TCTTCGACAATATGGTGACT+CGG 0.572372 8_1:-10807431 Msa1178160:three_prime_UTR
GCATACTTCTCCAATTGCAA+TGG 0.581715 8_1:+10810004 None:intergenic
GATGGTCGTGTCATTGGTGG+AGG 0.582808 8_1:-10808595 Msa1178160:CDS
TGTCAGGCTTCGACATCTGG+GGG 0.583807 8_1:-10809148 Msa1178160:CDS
CTTGCGGTACTGTTCCAGGA+TGG 0.584611 8_1:+10812310 None:intergenic
AATTTGATTAATGTCAGCTA+TGG 0.585484 8_1:-10807590 Msa1178160:three_prime_UTR
ATGGAAATAATCTTGTTAGA+GGG 0.585553 8_1:+10807386 None:intergenic
AGTGAGAATCAAAACTCAAG+AGG 0.586058 8_1:+10813723 None:intergenic
TATTCTTCATGAAGATGTGG+TGG 0.586699 8_1:+10813787 None:intergenic
AACAAATTTGAAACAAAACC+CGG 0.588179 8_1:+10807267 None:intergenic
AATGTAGGTGCTCCTTCTGG+GGG 0.588716 8_1:-10812438 Msa1178160:CDS
TATTGGATCCACGATGCCGA+TGG 0.589524 8_1:-10812490 Msa1178160:CDS
TTTCAATCAAGTATTGGTGG+TGG 0.596117 8_1:-10812519 Msa1178160:CDS
GAATTGTGATTGTGATCAAG+TGG 0.598876 8_1:+10813760 None:intergenic
ATTTAAATGCATGGATCGAG+GGG 0.603640 8_1:-10812664 Msa1178160:exon
TGGGAATTACGCATATCCAA+TGG 0.604904 8_1:+10807773 None:intergenic
AATGACACGACCATCAGGAC+TGG 0.614331 8_1:+10808603 None:intergenic
TCATATTCTTCATGAAGATG+TGG 0.616220 8_1:+10813784 None:intergenic
AACGATGAATTGGTATTCAG+CGG 0.622414 8_1:+10812540 None:intergenic
ATCCAGGGAAAACCTAGACC+GGG 0.622790 8_1:-10807285 Msa1178160:three_prime_UTR
ATGGACATTGATTTAATGCG+TGG 0.625354 8_1:-10807749 Msa1178160:CDS
CGACCGCGTTTCTGGACTTG+CGG 0.626523 8_1:+10812294 None:intergenic
AATTAAAGAGAGATGATGGT+GGG 0.628694 8_1:+10813855 None:intergenic
GGATCGAGGGGACCAAATGG+CGG 0.637165 8_1:-10812652 Msa1178160:CDS
TGTTGTCAAAGATTGTGAAG+GGG 0.637737 8_1:-10812692 Msa1178160:five_prime_UTR
TGGACATTGATTTAATGCGT+GGG 0.639036 8_1:-10807748 Msa1178160:CDS
GTAGAGGAAAGTCATCATCA+TGG 0.646920 8_1:-10807881 Msa1178160:CDS
TACTTGGTTGCTGATAACGA+TGG 0.650007 8_1:-10808664 Msa1178160:CDS
CCAATTCCAGAAGAATCCAT+CGG 0.651481 8_1:+10812474 None:intergenic
GAACCTGCCAAAAGGAAGCG+TGG 0.653132 8_1:-10812399 Msa1178160:CDS
GTGAGAATCAAAACTCAAGA+GGG 0.659461 8_1:+10813724 None:intergenic
TGGAAGGCCTAGAAAATATG+GGG 0.659615 8_1:-10812379 Msa1178160:CDS
AGAAGAATCCATCGGCATCG+TGG 0.669599 8_1:+10812482 None:intergenic
GAATTAAAGAGAGATGATGG+TGG 0.672734 8_1:+10813854 None:intergenic
TTAAATGTGACAGAGATAGG+TGG 0.683753 8_1:-10812756 Msa1178160:intron
ATTGCAATGGAGATGACATG+AGG 0.685631 8_1:+10810017 None:intergenic
TATTCAGCGGACGAATACCA+GGG 0.688364 8_1:+10812553 None:intergenic
ATTCAGCGGACGAATACCAG+GGG 0.743678 8_1:+10812554 None:intergenic
GTACCGCAAGTCCAGAAACG+CGG 0.753788 8_1:-10812297 Msa1178160:CDS
ATAATCGGGAGCTTTATGTG+GGG 0.762572 8_1:-10807959 Msa1178160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAATTTTTTTTTTATCTA+GGG + chr8_1:10807258-10807277 None:intergenic 10.0%
!!! ATTTTTTTTTCCTTATTTTT+TGG - chr8_1:10807902-10807921 Msa1178160:CDS 10.0%
!! ATTACTTATATTTATTCATA+TGG - chr8_1:10810881-10810900 Msa1178160:intron 10.0%
!! TAAAATTGAAACTAAAATAT+TGG + chr8_1:10811562-10811581 None:intergenic 10.0%
!!! GTGTAAATTTTATAAAATAA+GGG + chr8_1:10811653-10811672 None:intergenic 10.0%
!!! AGAATTTAATCAATTTTTAT+AGG - chr8_1:10812505-10812524 Msa1178160:CDS 10.0%
!!! GCATAATTTTTTTTTTATCT+AGG + chr8_1:10807259-10807278 None:intergenic 15.0%
!! TACAGAATGTAAAAAAAAAA+GGG + chr8_1:10807405-10807424 None:intergenic 15.0%
!!! TAATGTTAAAGATTTTGTTA+TGG - chr8_1:10807989-10808008 Msa1178160:intron 15.0%
!! AATTTAATCAGTAAAATCTT+TGG + chr8_1:10809840-10809859 None:intergenic 15.0%
!! AAAATATGTATCAATATTTC+AGG + chr8_1:10810072-10810091 None:intergenic 15.0%
!!! ATATTGATACATATTTTTAC+TGG - chr8_1:10810075-10810094 Msa1178160:intron 15.0%
!!! TATTGATACATATTTTTACT+GGG - chr8_1:10810076-10810095 Msa1178160:intron 15.0%
!! CATAGAAAATAACAATAATA+AGG + chr8_1:10810501-10810520 None:intergenic 15.0%
!!! AAAAAAAGTACAGATAATAT+AGG + chr8_1:10810546-10810565 None:intergenic 15.0%
!! AATCATAAATAATAGATATG+TGG + chr8_1:10811621-10811640 None:intergenic 15.0%
!!! GGTGTAAATTTTATAAAATA+AGG + chr8_1:10811654-10811673 None:intergenic 15.0%
!! CTAGTAATAATTTGATAAAA+TGG + chr8_1:10811767-10811786 None:intergenic 15.0%
!!! TTGCTTATTTTATATCAATA+CGG - chr8_1:10811810-10811829 Msa1178160:intron 15.0%
!!! TTTTAAAATTTTCGGATTTT+TGG + chr8_1:10811878-10811897 None:intergenic 15.0%
!! TGATTATGTTTAATAATTTG+TGG - chr8_1:10812652-10812671 Msa1178160:CDS 15.0%
!! CTACAGAATGTAAAAAAAAA+AGG + chr8_1:10807406-10807425 None:intergenic 20.0%
!! AATCAAAAAGCCAAAAAATA+AGG + chr8_1:10807915-10807934 None:intergenic 20.0%
!! AGAAACATGAAAACTAAAAA+AGG + chr8_1:10808079-10808098 None:intergenic 20.0%
!!! TTTCATGTTTCTATATAGTT+TGG - chr8_1:10808087-10808106 Msa1178160:intron 20.0%
!!! TTGTTATTTTAACCAAAGAT+CGG + chr8_1:10808403-10808422 None:intergenic 20.0%
!! CAAATAAAGTTTATCAACAA+TGG + chr8_1:10808447-10808466 None:intergenic 20.0%
!! ATTTGAAAAATGTGAAGTAA+AGG + chr8_1:10809547-10809566 None:intergenic 20.0%
!! TTGAAAAACATGTAAAGTAA+CGG + chr8_1:10809628-10809647 None:intergenic 20.0%
!! AGTTGTAACATTTAAACAAA+TGG + chr8_1:10809929-10809948 None:intergenic 20.0%
!! AAATATTATCTTAGTGACAA+AGG + chr8_1:10810000-10810019 None:intergenic 20.0%
!! ATGCATTGAAACAAATATAA+AGG + chr8_1:10810034-10810053 None:intergenic 20.0%
!! TTAAATTTATTAAATAGGCC+AGG + chr8_1:10810151-10810170 None:intergenic 20.0%
!! TGAATTATTATCTTTAGTCA+AGG - chr8_1:10810313-10810332 Msa1178160:intron 20.0%
!!! ATCGATATAGATGTTTTTTT+GGG - chr8_1:10810578-10810597 Msa1178160:intron 20.0%
!! TATATATTACACAAAGACTT+AGG + chr8_1:10810755-10810774 None:intergenic 20.0%
!! TAAGTCTTTGTGTAATATAT+AGG - chr8_1:10810754-10810773 Msa1178160:intron 20.0%
!! TAAATAGGTCAAAATGTATA+TGG - chr8_1:10810795-10810814 Msa1178160:intron 20.0%
!!! GAGTTTAGTTTTTAATGAAA+TGG - chr8_1:10811108-10811127 Msa1178160:intron 20.0%
!! TTAACATAAATCAATCACTT+AGG + chr8_1:10811255-10811274 None:intergenic 20.0%
!!! GTGATTGATTTATGTTAATT+TGG - chr8_1:10811257-10811276 Msa1178160:intron 20.0%
!!! TTAATGTTTTGAGTTGTTAT+TGG - chr8_1:10811307-10811326 Msa1178160:intron 20.0%
!!! TAGCTTTTAAAAGCTTTAAT+TGG - chr8_1:10811527-10811546 Msa1178160:intron 20.0%
!!! AGCTTTTAAAAGCTTTAATT+GGG - chr8_1:10811528-10811547 Msa1178160:intron 20.0%
!! TTATAAAATTTACACCTATC+TGG - chr8_1:10811658-10811677 Msa1178160:intron 20.0%
!!! CCTGTAACTTTTAAAATTTT+CGG + chr8_1:10811886-10811905 None:intergenic 20.0%
!! TAAATGCTAAAACATATCTT+TGG + chr8_1:10811931-10811950 None:intergenic 20.0%
!!! TAGAACTATATTTGTTATGT+CGG - chr8_1:10812188-10812207 Msa1178160:intron 20.0%
!! AGATTATTAACTTCATAACA+TGG + chr8_1:10812565-10812584 None:intergenic 20.0%
!!! TTTCTATGTTTCTAATTTTG+AGG + chr8_1:10812907-10812926 None:intergenic 20.0%
!! TTAAATATGTATACCAATAC+TGG + chr8_1:10813691-10813710 None:intergenic 20.0%
!!! GTATACATATTTAAGATTCA+TGG - chr8_1:10813697-10813716 Msa1178160:intron 20.0%
!!! ATGATTTATTTCTAAATCCA+GGG - chr8_1:10814088-10814107 Msa1178160:five_prime_UTR 20.0%
!!! TTTTTTTTTATCTAGGGATG+AGG + chr8_1:10807252-10807271 None:intergenic 25.0%
! GAAAGTTGAAAAATGTTCAA+CGG + chr8_1:10807571-10807590 None:intergenic 25.0%
! ATGTGTTAGTATTCATTCAT+AGG - chr8_1:10807724-10807743 Msa1178160:three_prime_UTR 25.0%
! GCTTAAGAAAAAACACAAAA+AGG + chr8_1:10807827-10807846 None:intergenic 25.0%
!!! TTTTGTTTTAGTGTAGCATT+TGG - chr8_1:10807849-10807868 Msa1178160:CDS 25.0%
!!! GTTAAAGATTTTGTTATGGT+TGG - chr8_1:10807993-10808012 Msa1178160:intron 25.0%
! AAGTTTATCAACAATGGTAA+TGG + chr8_1:10808441-10808460 None:intergenic 25.0%
!!! AACCTTTCATTTTTGATTTG+TGG - chr8_1:10808471-10808490 Msa1178160:intron 25.0%
! AACCACAAATCAAAAATGAA+AGG + chr8_1:10808476-10808495 None:intergenic 25.0%
!!! ATTGGATTTCATTGATTTCA+TGG - chr8_1:10808572-10808591 Msa1178160:CDS 25.0%
!! ATTTTAAATGTGACAGAGAT+AGG - chr8_1:10808629-10808648 Msa1178160:CDS 25.0%
! TTTGGATTGCTGAATATTAA+AGG - chr8_1:10808660-10808679 Msa1178160:CDS 25.0%
! TTGGATTGCTGAATATTAAA+GGG - chr8_1:10808661-10808680 Msa1178160:CDS 25.0%
! ATGGATATGAATTTACGAAA+CGG + chr8_1:10809240-10809259 None:intergenic 25.0%
! CTATAAAATCAAACAACTCA+TGG + chr8_1:10809259-10809278 None:intergenic 25.0%
!!! TTTGAAGTTTTTTTGAGTCA+AGG - chr8_1:10809281-10809300 Msa1178160:intron 25.0%
! GTTGTTAATTCAGTTCATAA+GGG + chr8_1:10809337-10809356 None:intergenic 25.0%
! CTTATGAACTGAATTAACAA+CGG - chr8_1:10809336-10809355 Msa1178160:intron 25.0%
! TTACTGAATACAAAGATAGA+TGG - chr8_1:10809402-10809421 Msa1178160:intron 25.0%
! TACTGAATACAAAGATAGAT+GGG - chr8_1:10809403-10809422 Msa1178160:intron 25.0%
! GAAAAAAAAAAGTGATGCAA+TGG + chr8_1:10809818-10809837 None:intergenic 25.0%
!! CATTGAAACTTAGACTATTT+TGG - chr8_1:10809870-10809889 Msa1178160:intron 25.0%
!! ATGTATCAATATTTCAGGTA+TGG + chr8_1:10810067-10810086 None:intergenic 25.0%
! TTAAATCATTAGCATAGTCT+AGG - chr8_1:10810167-10810186 Msa1178160:intron 25.0%
! AATATTTGAAAAACAAGCCA+TGG + chr8_1:10810438-10810457 None:intergenic 25.0%
!!! GATCGATATAGATGTTTTTT+TGG - chr8_1:10810577-10810596 Msa1178160:intron 25.0%
!!! TATAGATGTTTTTTTGGGAT+TGG - chr8_1:10810583-10810602 Msa1178160:intron 25.0%
!!! ATAGATGTTTTTTTGGGATT+GGG - chr8_1:10810584-10810603 Msa1178160:intron 25.0%
!! TGGTATAAAGAAGTATAACT+TGG - chr8_1:10811204-10811223 Msa1178160:intron 25.0%
!! GGTATAAAGAAGTATAACTT+GGG - chr8_1:10811205-10811224 Msa1178160:intron 25.0%
!!! ATATGTCTGTCGTTTATTTT+TGG - chr8_1:10811450-10811469 Msa1178160:intron 25.0%
!! AGTACCTTTAATCTATGTTT+TGG - chr8_1:10811488-10811507 Msa1178160:intron 25.0%
! TAAAAGCTAATCTACCAAAT+TGG + chr8_1:10811516-10811535 None:intergenic 25.0%
!!! TTGAAGCTTTGAAAAGATAA+GGG + chr8_1:10811586-10811605 None:intergenic 25.0%
!!! TGTCAACATGTCTTTTTTAT+TGG - chr8_1:10811787-10811806 Msa1178160:intron 25.0%
!!! CCGAAAATTTTAAAAGTTAC+AGG - chr8_1:10811883-10811902 Msa1178160:intron 25.0%
! AGGACCAAAGAAATAAAATA+AGG - chr8_1:10811903-10811922 Msa1178160:intron 25.0%
! GGACCAAAGAAATAAAATAA+GGG - chr8_1:10811904-10811923 Msa1178160:intron 25.0%
!!! GTTAACAGTGCTTTTTTTAA+TGG - chr8_1:10811956-10811975 Msa1178160:intron 25.0%
!!! ATGGAAGTACTTTTTTAGAA+AGG - chr8_1:10811975-10811994 Msa1178160:intron 25.0%
!!! TGGAAGTACTTTTTTAGAAA+GGG - chr8_1:10811976-10811995 Msa1178160:intron 25.0%
! ACATGTGACAAAAATTCAAA+CGG + chr8_1:10812061-10812080 None:intergenic 25.0%
! CTTACATATGATTACACAAA+TGG + chr8_1:10812088-10812107 None:intergenic 25.0%
! GACATAACAAATATAGTTCT+AGG + chr8_1:10812189-10812208 None:intergenic 25.0%
! TTCACTAACATTTCCATAAA+GGG + chr8_1:10812449-10812468 None:intergenic 25.0%
! TTTCACTAACATTTCCATAA+AGG + chr8_1:10812450-10812469 None:intergenic 25.0%
!! TAAGCAATTCTTCTAAAGAA+TGG + chr8_1:10812480-10812499 None:intergenic 25.0%
!! TTTTTATAGGCAAATGTTAG+CGG - chr8_1:10812518-10812537 Msa1178160:CDS 25.0%
!! CTTATGTTTTCTGTTTGTAT+AGG - chr8_1:10813114-10813133 Msa1178160:intron 25.0%
! ATCTAACTATTCTAACTGAT+TGG + chr8_1:10813241-10813260 None:intergenic 25.0%
! TAGCAATCCAAATAAAACTA+GGG + chr8_1:10813382-10813401 None:intergenic 25.0%
! TTAGCAATCCAAATAAAACT+AGG + chr8_1:10813383-10813402 None:intergenic 25.0%
! TTTGGATTGCTAAATTTGAT+TGG - chr8_1:10813390-10813409 Msa1178160:intron 25.0%
! CATTAAATCAATGTCCATAT+GGG + chr8_1:10813637-10813656 None:intergenic 25.0%
!! TAGAATTCTTTCTTGACTTT+TGG - chr8_1:10813775-10813794 Msa1178160:five_prime_UTR 25.0%
! AATTTGATTAATGTCAGCTA+TGG - chr8_1:10813798-10813817 Msa1178160:five_prime_UTR 25.0%
!!! TTTGATGATTTTGCTTTTTG+TGG - chr8_1:10813874-10813893 Msa1178160:five_prime_UTR 25.0%
! ATGGAAATAATCTTGTTAGA+GGG + chr8_1:10814005-10814024 None:intergenic 25.0%
! AATGGAAATAATCTTGTTAG+AGG + chr8_1:10814006-10814025 None:intergenic 25.0%
! CTAACAAGATTATTTCCATT+AGG - chr8_1:10814006-10814025 Msa1178160:five_prime_UTR 25.0%
! TTTGTCATTAGATTGTTTCA+TGG - chr8_1:10814042-10814061 Msa1178160:five_prime_UTR 25.0%
!!! GATGATTTATTTCTAAATCC+AGG - chr8_1:10814087-10814106 Msa1178160:five_prime_UTR 25.0%
!! AACAAATTTGAAACAAAACC+CGG + chr8_1:10814124-10814143 None:intergenic 25.0%
! AATTAAAGAGAGATGATGGT+GGG + chr8_1:10807536-10807555 None:intergenic 30.0%
AATGTTCAACGGTTTCATAT+GGG + chr8_1:10807560-10807579 None:intergenic 30.0%
AAATGTTCAACGGTTTCATA+TGG + chr8_1:10807561-10807580 None:intergenic 30.0%
TCATATTCTTCATGAAGATG+TGG + chr8_1:10807607-10807626 None:intergenic 30.0%
TATCTCTTTCTTATGCTTTG+AGG - chr8_1:10807754-10807773 Msa1178160:CDS 30.0%
ATCAAAGGGTAAGCTTAAAA+GGG - chr8_1:10807949-10807968 Msa1178160:CDS 30.0%
!! AAAGATTTTGTTATGGTTGG+TGG - chr8_1:10807996-10808015 Msa1178160:intron 30.0%
CAATGAAATCAATTAGAGTG+AGG + chr8_1:10808141-10808160 None:intergenic 30.0%
TAAATGTGAAAAGCAAGCAA+AGG + chr8_1:10808252-10808271 None:intergenic 30.0%
ATCAATGAAATCCAATATGC+AGG + chr8_1:10808568-10808587 None:intergenic 30.0%
! TTTGTTGTCAAAGATTGTGA+AGG - chr8_1:10808694-10808713 Msa1178160:CDS 30.0%
TTGTTGTCAAAGATTGTGAA+GGG - chr8_1:10808695-10808714 Msa1178160:CDS 30.0%
AATTTAAATGCATGGATCGA+GGG - chr8_1:10808723-10808742 Msa1178160:intron 30.0%
ACTTGATTGAAACGATGAAT+TGG + chr8_1:10808861-10808880 None:intergenic 30.0%
TCATCGTTTCAATCAAGTAT+TGG - chr8_1:10808863-10808882 Msa1178160:intron 30.0%
! TCCCTATTACACTTATTTCT+TGG - chr8_1:10809169-10809188 Msa1178160:CDS 30.0%
GCCAAGAAATAAGTGTAATA+GGG + chr8_1:10809173-10809192 None:intergenic 30.0%
!!! GGTTTTTTATTTGTTCATGC+CGG - chr8_1:10809302-10809321 Msa1178160:intron 30.0%
CGTTGTTAATTCAGTTCATA+AGG + chr8_1:10809338-10809357 None:intergenic 30.0%
AAAAACATGTAAAGTAACGG+AGG + chr8_1:10809625-10809644 None:intergenic 30.0%
TTGAAAAACATGCCAAGTAA+CGG + chr8_1:10809732-10809751 None:intergenic 30.0%
!!! ACTTAGACTATTTTGGTCAT+CGG - chr8_1:10809877-10809896 Msa1178160:intron 30.0%
TGACAAAGGAACAAATAATG+CGG + chr8_1:10809986-10810005 None:intergenic 30.0%
AACAAAACATGTTGCAATGT+CGG - chr8_1:10810393-10810412 Msa1178160:intron 30.0%
!!! TAGATGTTTTTTTGGGATTG+GGG - chr8_1:10810585-10810604 Msa1178160:intron 30.0%
CAGATAAACAGACTAAACTT+GGG + chr8_1:10810667-10810686 None:intergenic 30.0%
TCAGATAAACAGACTAAACT+TGG + chr8_1:10810668-10810687 None:intergenic 30.0%
TTTAGTCTGTTTATCTGAAC+CGG - chr8_1:10810670-10810689 Msa1178160:intron 30.0%
! TAAGCTTTTGGATTCTTCAA+AGG + chr8_1:10810712-10810731 None:intergenic 30.0%
ATTTAAAGAGTTAGTCCTAG+TGG + chr8_1:10810780-10810799 None:intergenic 30.0%
CTAGGACTAACTCTTTAAAT+AGG - chr8_1:10810780-10810799 Msa1178160:intron 30.0%
! GTCTGACTCTTTTATTGAAA+TGG - chr8_1:10810944-10810963 Msa1178160:intron 30.0%
TTGTCCTTATGCATTTCATA+GGG + chr8_1:10811035-10811054 None:intergenic 30.0%
TTCTCAAGAACGTATAATTG+AGG + chr8_1:10811076-10811095 None:intergenic 30.0%
CATTAAAAACTAAACTCAGC+CGG + chr8_1:10811105-10811124 None:intergenic 30.0%
TCTCTTAGAATGATCTTATG+CGG - chr8_1:10811146-10811165 Msa1178160:intron 30.0%
GATAAATTGTTGTGAATCTG+TGG - chr8_1:10811184-10811203 Msa1178160:intron 30.0%
GGAACCAAAACATAGATTAA+AGG + chr8_1:10811495-10811514 None:intergenic 30.0%
!!! TCTATGTTTTGGTTCCAATT+TGG - chr8_1:10811499-10811518 Msa1178160:intron 30.0%
!! GTTGAAGCTTTGAAAAGATA+AGG + chr8_1:10811587-10811606 None:intergenic 30.0%
! TATCTTTTCAAAGCTTCAAC+TGG - chr8_1:10811587-10811606 Msa1178160:intron 30.0%
! ATCTTTTCAAAGCTTCAACT+GGG - chr8_1:10811588-10811607 Msa1178160:intron 30.0%
TGCTAGTGTTACATAGAAAA+GGG + chr8_1:10811686-10811705 None:intergenic 30.0%
!!! GGTCCCTTATTTTATTTCTT+TGG + chr8_1:10811910-10811929 None:intergenic 30.0%
! TAAATCCTTTTCTTCTGTGT+AGG - chr8_1:10812125-10812144 Msa1178160:intron 30.0%
! TGCTAAAGAGACTTTTTGAA+GGG + chr8_1:10812603-10812622 None:intergenic 30.0%
! ATGCTAAAGAGACTTTTTGA+AGG + chr8_1:10812604-10812623 None:intergenic 30.0%
!!! TCTAATTTTGAGGTGAGAAA+GGG + chr8_1:10812897-10812916 None:intergenic 30.0%
!!! TTCTAATTTTGAGGTGAGAA+AGG + chr8_1:10812898-10812917 None:intergenic 30.0%
CAAAGTAAACAGAGGTAAAA+GGG + chr8_1:10812987-10813006 None:intergenic 30.0%
ACAAAGTAAACAGAGGTAAA+AGG + chr8_1:10812988-10813007 None:intergenic 30.0%
! TGTTTTCACAAAGTAAACAG+AGG + chr8_1:10812995-10813014 None:intergenic 30.0%
TCTGTTTGTATAGGAAATAG+TGG - chr8_1:10813123-10813142 Msa1178160:intron 30.0%
CTACTTAAGTTACACATGAT+CGG - chr8_1:10813288-10813307 Msa1178160:intron 30.0%
!!! TGCAAAACCCTAGTTTTATT+TGG - chr8_1:10813372-10813391 Msa1178160:intron 30.0%
!! TTCTTCTTGTTCTTGGTTTT+TGG + chr8_1:10813459-10813478 None:intergenic 30.0%
ATCTTCATTCTTCTTGTTCT+TGG + chr8_1:10813466-10813485 None:intergenic 30.0%
GCATTAAATCAATGTCCATA+TGG + chr8_1:10813638-10813657 None:intergenic 30.0%
TTATTAGCATACACCAGTAT+TGG - chr8_1:10813675-10813694 Msa1178160:intron 30.0%
AAAATTGCAAGATCTCCTAA+TGG + chr8_1:10814024-10814043 None:intergenic 30.0%
! GAATTAAAGAGAGATGATGG+TGG + chr8_1:10807537-10807556 None:intergenic 35.0%
ATGTTCAACGGTTTCATATG+GGG + chr8_1:10807559-10807578 None:intergenic 35.0%
TATTCTTCATGAAGATGTGG+TGG + chr8_1:10807604-10807623 None:intergenic 35.0%
GAATTGTGATTGTGATCAAG+TGG + chr8_1:10807631-10807650 None:intergenic 35.0%
GTGAGAATCAAAACTCAAGA+GGG + chr8_1:10807667-10807686 None:intergenic 35.0%
AGTGAGAATCAAAACTCAAG+AGG + chr8_1:10807668-10807687 None:intergenic 35.0%
TTTGTGAGTGTATGCATCAA+AGG - chr8_1:10807934-10807953 Msa1178160:CDS 35.0%
TTGTGAGTGTATGCATCAAA+GGG - chr8_1:10807935-10807954 Msa1178160:CDS 35.0%
CATCAAAGGGTAAGCTTAAA+AGG - chr8_1:10807948-10807967 Msa1178160:CDS 35.0%
AGTAGAAGAAGCTAGATCAA+TGG + chr8_1:10808171-10808190 None:intergenic 35.0%
TTAGTTGTCTTCTGCATGTT+TGG - chr8_1:10808193-10808212 Msa1178160:intron 35.0%
AAAAGGACCTTAAGACTCAA+AGG + chr8_1:10808223-10808242 None:intergenic 35.0%
GCAAGCAAAGGAAAAAGAAA+AGG + chr8_1:10808240-10808259 None:intergenic 35.0%
! ACCAAGTTGTTGATGAAGTA+AGG - chr8_1:10808316-10808335 Msa1178160:intron 35.0%
ACCTTACTTCATCAACAACT+TGG + chr8_1:10808320-10808339 None:intergenic 35.0%
! AGTTGTTGATGAAGTAAGGT+CGG - chr8_1:10808320-10808339 Msa1178160:intron 35.0%
TAAGCAAAGTCTAGCAAAGA+GGG + chr8_1:10808372-10808391 None:intergenic 35.0%
TTAAATGTGACAGAGATAGG+TGG - chr8_1:10808632-10808651 Msa1178160:CDS 35.0%
TGTTGTCAAAGATTGTGAAG+GGG - chr8_1:10808696-10808715 Msa1178160:CDS 35.0%
GAATTTAAATGCATGGATCG+AGG - chr8_1:10808722-10808741 Msa1178160:intron 35.0%
ATTTAAATGCATGGATCGAG+GGG - chr8_1:10808724-10808743 Msa1178160:intron 35.0%
CATAAAGTATGATGCAGAAC+CGG + chr8_1:10808768-10808787 None:intergenic 35.0%
GGGAATTATGCAATTCATGT+TGG + chr8_1:10808817-10808836 None:intergenic 35.0%
AACGATGAATTGGTATTCAG+CGG + chr8_1:10808851-10808870 None:intergenic 35.0%
!! TCGTTTCAATCAAGTATTGG+TGG - chr8_1:10808866-10808885 Msa1178160:intron 35.0%
!! TTTCAATCAAGTATTGGTGG+TGG - chr8_1:10808869-10808888 Msa1178160:intron 35.0%
GGATCTCAATGTATCAATGT+AGG - chr8_1:10808935-10808954 Msa1178160:intron 35.0%
! AAACAACAGTTGGCTTCTTT+CGG - chr8_1:10809142-10809161 Msa1178160:CDS 35.0%
CGCCAAGAAATAAGTGTAAT+AGG + chr8_1:10809174-10809193 None:intergenic 35.0%
TTCATAAGGGATTAGAATGC+CGG + chr8_1:10809324-10809343 None:intergenic 35.0%
!! AACCAAGACTTTTGAAAGCT+CGG + chr8_1:10809445-10809464 None:intergenic 35.0%
! TAGGAAACACTTGAGTGTTT+TGG + chr8_1:10809958-10809977 None:intergenic 35.0%
! AACAAATAATGCGGACTACT+AGG + chr8_1:10809977-10809996 None:intergenic 35.0%
TACTGGGATTAGAAGTGAAA+TGG - chr8_1:10810092-10810111 Msa1178160:intron 35.0%
ACTGGGATTAGAAGTGAAAT+GGG - chr8_1:10810093-10810112 Msa1178160:intron 35.0%
GCCTTATCATTAAATTGACC+TGG - chr8_1:10810130-10810149 Msa1178160:intron 35.0%
GCCAGGTCAATTTAATGATA+AGG + chr8_1:10810134-10810153 None:intergenic 35.0%
TCATTAGCATAGTCTAGGTT+AGG - chr8_1:10810172-10810191 Msa1178160:intron 35.0%
TCATGCCTGCATCAAAATTA+GGG + chr8_1:10810241-10810260 None:intergenic 35.0%
ATCATGCCTGCATCAAAATT+AGG + chr8_1:10810242-10810261 None:intergenic 35.0%
TTTGATGCAGGCATGATAAA+TGG - chr8_1:10810245-10810264 Msa1178160:intron 35.0%
!!! AGATGTTTTTTTGGGATTGG+GGG - chr8_1:10810586-10810605 Msa1178160:intron 35.0%
!!! GCTTAATTTTGAAACAGGAC+AGG + chr8_1:10810645-10810664 None:intergenic 35.0%
!!! CTTGGGCTTAATTTTGAAAC+AGG + chr8_1:10810650-10810669 None:intergenic 35.0%
TCAAAGGCCTCACTATAAAA+AGG + chr8_1:10810696-10810715 None:intergenic 35.0%
CCAAAAGCTTACCTCTTAAT+CGG - chr8_1:10810721-10810740 Msa1178160:intron 35.0%
TGTGTAATATATAGGCCACT+AGG - chr8_1:10810762-10810781 Msa1178160:intron 35.0%
!! TTCATATGGTTAGCTTGTCA+AGG - chr8_1:10810895-10810914 Msa1178160:intron 35.0%
GTCAAGGCTATAAGACATTT+CGG - chr8_1:10810911-10810930 Msa1178160:intron 35.0%
TGTGAAGTAATGCAAGTCTT+AGG - chr8_1:10810977-10810996 Msa1178160:intron 35.0%
TATCCCCTATGAAATGCATA+AGG - chr8_1:10811028-10811047 Msa1178160:intron 35.0%
TGTCCTTATGCATTTCATAG+GGG + chr8_1:10811034-10811053 None:intergenic 35.0%
CTTGTCCTTATGCATTTCAT+AGG + chr8_1:10811036-10811055 None:intergenic 35.0%
!!! TGTTTTGAGTTGTTATTGGC+AGG - chr8_1:10811311-10811330 Msa1178160:intron 35.0%
GCTAGTGTTACATAGAAAAG+GGG + chr8_1:10811685-10811704 None:intergenic 35.0%
GTGCTAGTGTTACATAGAAA+AGG + chr8_1:10811687-10811706 None:intergenic 35.0%
TGTAGCCATGTACACATATA+GGG + chr8_1:10811734-10811753 None:intergenic 35.0%
ATGTAGCCATGTACACATAT+AGG + chr8_1:10811735-10811754 None:intergenic 35.0%
CGCTCAAATTGTATTCGAAA+AGG + chr8_1:10811837-10811856 None:intergenic 35.0%
CGAATACAATTTGAGCGAAA+AGG - chr8_1:10811840-10811859 Msa1178160:intron 35.0%
AATGTCCTACACAGAAGAAA+AGG + chr8_1:10812133-10812152 None:intergenic 35.0%
GGACATTGCAACAAAAATTC+TGG - chr8_1:10812146-10812165 Msa1178160:intron 35.0%
!! ATATTTGTTATGTCGGCCAA+TGG - chr8_1:10812195-10812214 Msa1178160:intron 35.0%
AATCACATAGCAACCCTTTA+TGG - chr8_1:10812433-10812452 Msa1178160:CDS 35.0%
CATAACATGGCGATCATATA+AGG + chr8_1:10812552-10812571 None:intergenic 35.0%
!!! TTTTGAGATACTTAGCCTGA+CGG - chr8_1:10812696-10812715 Msa1178160:five_prime_UTR 35.0%
TTTCAATGCTATCCTAACAG+CGG + chr8_1:10812871-10812890 None:intergenic 35.0%
!!! CTAATTTTGAGGTGAGAAAG+GGG + chr8_1:10812896-10812915 None:intergenic 35.0%
! ATAAAACTAGGGTTTTGCAG+CGG + chr8_1:10813371-10813390 None:intergenic 35.0%
! TTTGATTGGTCATGACTATC+AGG - chr8_1:10813404-10813423 Msa1178160:intron 35.0%
CATGACTATCAGGTGATAAT+CGG - chr8_1:10813414-10813433 Msa1178160:intron 35.0%
ATGACTATCAGGTGATAATC+GGG - chr8_1:10813415-10813434 Msa1178160:intron 35.0%
GATTCAGAAGATCAAGAAGT+TGG - chr8_1:10813483-10813502 Msa1178160:intron 35.0%
GAAATGCTATTCATTGCAAC+TGG + chr8_1:10813543-10813562 None:intergenic 35.0%
!! ATGGACATTGATTTAATGCG+TGG - chr8_1:10813639-10813658 Msa1178160:intron 35.0%
!! TGGACATTGATTTAATGCGT+GGG - chr8_1:10813640-10813659 Msa1178160:intron 35.0%
! CTATGGTTGATTGACTTTAG+AGG - chr8_1:10813815-10813834 Msa1178160:five_prime_UTR 35.0%
!! CTCATATTTTTGTAGCTGTG+AGG - chr8_1:10813843-10813862 Msa1178160:five_prime_UTR 35.0%
!!! TGATTTTGCTTTTTGTGGCA+AGG - chr8_1:10813879-10813898 Msa1178160:five_prime_UTR 35.0%
ATCAATGAGATTAGCAGAAG+TGG - chr8_1:10813930-10813949 Msa1178160:five_prime_UTR 35.0%
GGGGAATTAAAGAGAGATGA+TGG + chr8_1:10807540-10807559 None:intergenic 40.0%
! TGGTTTGCCTTTGAGTCTTA+AGG - chr8_1:10808213-10808232 Msa1178160:intron 40.0%
GTAAGCAAAGTCTAGCAAAG+AGG + chr8_1:10808373-10808392 None:intergenic 40.0%
TTAACCAAAGATCGGCAAGA+AGG + chr8_1:10808395-10808414 None:intergenic 40.0%
TCTTGTTAGTGCCTGCATAT+TGG - chr8_1:10808554-10808573 Msa1178160:intron 40.0%
CAGAGATAGGTGGTAAAGTT+TGG - chr8_1:10808642-10808661 Msa1178160:CDS 40.0%
GGGGCTTGAATTTAAATGCA+TGG - chr8_1:10808715-10808734 Msa1178160:intron 40.0%
GCATCATACTTTATGCAGAC+AGG - chr8_1:10808773-10808792 Msa1178160:intron 40.0%
TTTATGCAGACAGGATTACC+TGG - chr8_1:10808782-10808801 Msa1178160:intron 40.0%
CATGAATTGCATAATTCCCC+TGG - chr8_1:10808818-10808837 Msa1178160:intron 40.0%
CCAATTCCAGAAGAATCCAT+CGG + chr8_1:10808917-10808936 None:intergenic 40.0%
GTGGAAGGCCTAGAAAATAT+GGG - chr8_1:10809008-10809027 Msa1178160:intron 40.0%
TGGAAGGCCTAGAAAATATG+GGG - chr8_1:10809009-10809028 Msa1178160:intron 40.0%
!!! AGCCAACTGTTGTTTTTTCC+CGG + chr8_1:10809137-10809156 None:intergenic 40.0%
AAAAACATGCCAAGTAACGG+AGG + chr8_1:10809729-10809748 None:intergenic 40.0%
TTTAATGATAAGGCCAAGCC+TGG + chr8_1:10810124-10810143 None:intergenic 40.0%
AGCATAGTCTAGGTTAGGTT+TGG - chr8_1:10810177-10810196 Msa1178160:intron 40.0%
GCATAGTCTAGGTTAGGTTT+GGG - chr8_1:10810178-10810197 Msa1178160:intron 40.0%
! TCAAAATTAGGGGTGCGAAT+AGG + chr8_1:10810230-10810249 None:intergenic 40.0%
CATGCCTGCATCAAAATTAG+GGG + chr8_1:10810240-10810259 None:intergenic 40.0%
! GCAGGCATGATAAATGGTTT+TGG - chr8_1:10810251-10810270 Msa1178160:intron 40.0%
!!! GATGTTTTTTTGGGATTGGG+GGG - chr8_1:10810587-10810606 Msa1178160:intron 40.0%
! TTTGAAACAGGACAGGTCTA+TGG + chr8_1:10810638-10810657 None:intergenic 40.0%
! CCGATTAAGAGGTAAGCTTT+TGG + chr8_1:10810724-10810743 None:intergenic 40.0%
TTACCTCTTAATCGGATGAC+AGG - chr8_1:10810729-10810748 Msa1178160:intron 40.0%
GGCTATAAGACATTTCGGAT+AGG - chr8_1:10810916-10810935 Msa1178160:intron 40.0%
!! TTTGAGTTGTTATTGGCAGG+TGG - chr8_1:10811314-10811333 Msa1178160:intron 40.0%
! ATCTCTAGTTCAGCTGGAAA+TGG - chr8_1:10811341-10811360 Msa1178160:intron 40.0%
ATTGCAATGGAGATGACATG+AGG + chr8_1:10811374-10811393 None:intergenic 40.0%
CATGTCATCTCCATTGCAAT+TGG - chr8_1:10811374-10811393 Msa1178160:intron 40.0%
GCATACTTCTCCAATTGCAA+TGG + chr8_1:10811387-10811406 None:intergenic 40.0%
TCAAAGCTTCAACTGGGAAT+TGG - chr8_1:10811594-10811613 Msa1178160:intron 40.0%
CAAAGCTTCAACTGGGAATT+GGG - chr8_1:10811595-10811614 Msa1178160:intron 40.0%
!!! TCGGATTTTTGGTTTCAACG+TGG + chr8_1:10811867-10811886 None:intergenic 40.0%
! AATTCTGGCATTTTCTCAGC+AGG - chr8_1:10812161-10812180 Msa1178160:intron 40.0%
! ATTCTGGCATTTTCTCAGCA+GGG - chr8_1:10812162-10812181 Msa1178160:intron 40.0%
GTTCTGTCACATATGAGGTT+TGG - chr8_1:10812262-10812281 Msa1178160:CDS 40.0%
! TTGTGGTCTTTTGCCTCAAT+AGG - chr8_1:10812669-10812688 Msa1178160:exon 40.0%
! TGTGGTCTTTTGCCTCAATA+GGG - chr8_1:10812670-10812689 Msa1178160:exon 40.0%
! TTTGAGATACTTAGCCTGAC+GGG - chr8_1:10812697-10812716 Msa1178160:five_prime_UTR 40.0%
! TACTTGGTTGCTGATAACGA+TGG - chr8_1:10812724-10812743 Msa1178160:five_prime_UTR 40.0%
AGAATAGCAGTTACCTGAAC+AGG + chr8_1:10812847-10812866 None:intergenic 40.0%
! TGATAATCGGGAGCTTTATG+TGG - chr8_1:10813427-10813446 Msa1178160:intron 40.0%
! GATAATCGGGAGCTTTATGT+GGG - chr8_1:10813428-10813447 Msa1178160:intron 40.0%
! ATAATCGGGAGCTTTATGTG+GGG - chr8_1:10813429-10813448 Msa1178160:intron 40.0%
!! AGATCAAGAAGTTGGTGTAG+AGG - chr8_1:10813491-10813510 Msa1178160:intron 40.0%
GTAGAGGAAAGTCATCATCA+TGG - chr8_1:10813507-10813526 Msa1178160:intron 40.0%
GTTGGAGTCAGACTTTGATT+TGG + chr8_1:10813567-10813586 None:intergenic 40.0%
CTCCAACATCTCTCAATTCT+TGG - chr8_1:10813580-10813599 Msa1178160:intron 40.0%
TGGGAATTACGCATATCCAA+TGG + chr8_1:10813618-10813637 None:intergenic 40.0%
GGATATGCGTAATTCCCATA+TGG - chr8_1:10813620-10813639 Msa1178160:intron 40.0%
TCTTCGACAATATGGTGACT+CGG - chr8_1:10813957-10813976 Msa1178160:five_prime_UTR 40.0%
! TTTGAAACAAAACCCGGTCT+AGG + chr8_1:10814118-10814137 None:intergenic 40.0%
AAGACCAGCTGAACTGTAAC+AGG + chr8_1:10808040-10808059 None:intergenic 45.0%
TAGCAAAGAGGGATCGAACT+CGG + chr8_1:10808361-10808380 None:intergenic 45.0%
CTTACCTTCTTGCCGATCTT+TGG - chr8_1:10808388-10808407 Msa1178160:intron 45.0%
TATGCAGGCACTAACAAGAG+TGG + chr8_1:10808553-10808572 None:intergenic 45.0%
!! TCATGTTGGTTTCCAGAACC+AGG + chr8_1:10808803-10808822 None:intergenic 45.0%
TATTCAGCGGACGAATACCA+GGG + chr8_1:10808838-10808857 None:intergenic 45.0%
!! CAATCAAGTATTGGTGGTGG+TGG - chr8_1:10808872-10808891 Msa1178160:intron 45.0%
!! ATTGGTGGTGGTGGTACTAT+TGG - chr8_1:10808881-10808900 Msa1178160:intron 45.0%
!! CCGATGGATTCTTCTGGAAT+TGG - chr8_1:10808914-10808933 Msa1178160:intron 45.0%
ATCAATGTAGGTGCTCCTTC+TGG - chr8_1:10808947-10808966 Msa1178160:intron 45.0%
TCAATGTAGGTGCTCCTTCT+GGG - chr8_1:10808948-10808967 Msa1178160:intron 45.0%
CGTGGAAGGCCTAGAAAATA+TGG - chr8_1:10809007-10809026 Msa1178160:intron 45.0%
! CCATCTGCCCCATATTTTCT+AGG + chr8_1:10809019-10809038 None:intergenic 45.0%
CCTAGAAAATATGGGGCAGA+TGG - chr8_1:10809016-10809035 Msa1178160:intron 45.0%
GTCCGGGAAAAAACAACAGT+TGG - chr8_1:10809132-10809151 Msa1178160:CDS 45.0%
! CGTTTTCTTCCTCCGTTACT+TGG - chr8_1:10809613-10809632 Msa1178160:intron 45.0%
GCGAATAGGTCAAGAGCTAA+GGG + chr8_1:10810216-10810235 None:intergenic 45.0%
TGCGAATAGGTCAAGAGCTA+AGG + chr8_1:10810217-10810236 None:intergenic 45.0%
ATGGCCAAAACAATCGAGTG+GGG + chr8_1:10810419-10810438 None:intergenic 45.0%
CATGGCCAAAACAATCGAGT+GGG + chr8_1:10810420-10810439 None:intergenic 45.0%
!!! TTTTTTGGGATTGGGGGGAA+TGG - chr8_1:10810592-10810611 Msa1178160:intron 45.0%
! GAACCGGCCTTTTTATAGTG+AGG - chr8_1:10810686-10810705 Msa1178160:intron 45.0%
AGGCCTCACTATAAAAAGGC+CGG + chr8_1:10810692-10810711 None:intergenic 45.0%
ACGTTCTTGAGAAACGTGAC+CGG - chr8_1:10811083-10811102 Msa1178160:intron 45.0%
TATGCGGCAAGTAGCAAAGA+TGG - chr8_1:10811162-10811181 Msa1178160:intron 45.0%
! GGTTTGATCTCTAGTTCAGC+TGG - chr8_1:10811335-10811354 Msa1178160:intron 45.0%
CATAGAAAAGGGGTCCAGAT+AGG + chr8_1:10811675-10811694 None:intergenic 45.0%
CATGTACACATATAGGGCAC+TGG + chr8_1:10811728-10811747 None:intergenic 45.0%
CAGTGCCCTATATGTGTACA+TGG - chr8_1:10811726-10811745 Msa1178160:intron 45.0%
CTCTACTGTGACACTTTGTC+AGG - chr8_1:10812224-10812243 Msa1178160:intron 45.0%
TTTGTCAGGCTTCGACATCT+GGG - chr8_1:10812238-10812257 Msa1178160:intron 45.0%
! GTGGTCTTTTGCCTCAATAG+GGG - chr8_1:10812671-10812690 Msa1178160:exon 45.0%
ATCTCAAAACGCCCCTATTG+AGG + chr8_1:10812685-10812704 None:intergenic 45.0%
ACTGCTATTCTACCGCTGTT+AGG - chr8_1:10812856-10812875 Msa1178160:intron 45.0%
GGCCAAGAATTGAGAGATGT+TGG + chr8_1:10813585-10813604 None:intergenic 45.0%
GTGGCTGATCTTCGACAATA+TGG - chr8_1:10813949-10813968 Msa1178160:five_prime_UTR 45.0%
CTTCGACAATATGGTGACTC+GGG - chr8_1:10813958-10813977 Msa1178160:five_prime_UTR 45.0%
AATCCAGGGAAAACCTAGAC+CGG - chr8_1:10814102-10814121 Msa1178160:five_prime_UTR 45.0%
!! ATGATTTAAATTTATTAAAT+AGG + chr8_1:10810156-10810175 None:intergenic 5.0%
TGGACCTGTTACAGTTCAGC+TGG - chr8_1:10808033-10808052 Msa1178160:intron 50.0%
GAAGTAAGGTCGGATCGATG+AGG - chr8_1:10808330-10808349 Msa1178160:intron 50.0%
AGCAAAGAGGGATCGAACTC+GGG + chr8_1:10808360-10808379 None:intergenic 50.0%
GACCAAATGGCGGCATTATC+CGG - chr8_1:10808746-10808765 Msa1178160:intron 50.0%
AACCGGATAATGCCGCCATT+TGG + chr8_1:10808751-10808770 None:intergenic 50.0%
CAGACAGGATTACCTGGTTC+TGG - chr8_1:10808788-10808807 Msa1178160:intron 50.0%
ATTCAGCGGACGAATACCAG+GGG + chr8_1:10808837-10808856 None:intergenic 50.0%
GTATTCAGCGGACGAATACC+AGG + chr8_1:10808839-10808858 None:intergenic 50.0%
TATTGGATCCACGATGCCGA+TGG - chr8_1:10808898-10808917 Msa1178160:intron 50.0%
AGAAGAATCCATCGGCATCG+TGG + chr8_1:10808909-10808928 None:intergenic 50.0%
! ACGATGCCGATGGATTCTTC+TGG - chr8_1:10808908-10808927 Msa1178160:intron 50.0%
CAATGTAGGTGCTCCTTCTG+GGG - chr8_1:10808949-10808968 Msa1178160:intron 50.0%
AATGTAGGTGCTCCTTCTGG+GGG - chr8_1:10808950-10808969 Msa1178160:intron 50.0%
! CTTCCTTTTGGCAGGTTCAC+CGG + chr8_1:10808987-10809006 None:intergenic 50.0%
!!! TGTTGTTTTTTCCCGGACCC+TGG + chr8_1:10809130-10809149 None:intergenic 50.0%
!! AGATGGGCTGTGCACAAAAG+TGG - chr8_1:10809419-10809438 Msa1178160:intron 50.0%
GGCCGAGCTTTCAAAAGTCT+TGG - chr8_1:10809440-10809459 Msa1178160:intron 50.0%
AGAGCTAAGGGCTTCTAGGT+TGG + chr8_1:10810204-10810223 None:intergenic 50.0%
GTCAAGAGCTAAGGGCTTCT+AGG + chr8_1:10810208-10810227 None:intergenic 50.0%
!! CGCACCCCTAATTTTGATGC+AGG - chr8_1:10810233-10810252 Msa1178160:intron 50.0%
CCATGGCCAAAACAATCGAG+TGG + chr8_1:10810421-10810440 None:intergenic 50.0%
!!! CCACTCGATTGTTTTGGCCA+TGG - chr8_1:10810418-10810437 Msa1178160:intron 50.0%
AGGCCTGTCATCCGATTAAG+AGG + chr8_1:10810735-10810754 None:intergenic 50.0%
CACAGTAGAGACAGCACCAT+TGG + chr8_1:10812214-10812233 None:intergenic 50.0%
CTTTGTCAGGCTTCGACATC+TGG - chr8_1:10812237-10812256 Msa1178160:intron 50.0%
TTGTCAGGCTTCGACATCTG+GGG - chr8_1:10812239-10812258 Msa1178160:intron 50.0%
TGGGGGTTCTGTCACATATG+AGG - chr8_1:10812257-10812276 Msa1178160:CDS 50.0%
GTTTCTCTTGCCAGTCCTGA+TGG - chr8_1:10812775-10812794 Msa1178160:intron 50.0%
AATGACACGACCATCAGGAC+TGG + chr8_1:10812788-10812807 None:intergenic 50.0%
AGTCCTGATGGTCGTGTCAT+TGG - chr8_1:10812787-10812806 Msa1178160:intron 50.0%
CATTGCTGCAAGTCCTGTTC+AGG - chr8_1:10812831-10812850 Msa1178160:intron 50.0%
ATATCCAATGGACGCGATGC+AGG + chr8_1:10813606-10813625 None:intergenic 50.0%
! TGACTCGGGCTTGAAGTTCT+GGG - chr8_1:10813972-10813991 Msa1178160:five_prime_UTR 50.0%
ATCCAGGGAAAACCTAGACC+GGG - chr8_1:10814103-10814122 Msa1178160:five_prime_UTR 50.0%
! TGGTGGTGTGAGTGTGAGAG+TGG - chr8_1:10808013-10808032 Msa1178160:intron 55.0%
CATGGATCGAGGGGACCAAA+TGG - chr8_1:10808733-10808752 Msa1178160:intron 55.0%
CAACCGGTGAACCTGCCAAA+AGG - chr8_1:10808981-10809000 Msa1178160:intron 55.0%
GAACCTGCCAAAAGGAAGCG+TGG - chr8_1:10808989-10809008 Msa1178160:intron 55.0%
! CTTCCACGCTTCCTTTTGGC+AGG + chr8_1:10808995-10809014 None:intergenic 55.0%
! CTGCCAAAAGGAAGCGTGGA+AGG - chr8_1:10808993-10809012 Msa1178160:intron 55.0%
! AGGCCTTCCACGCTTCCTTT+TGG + chr8_1:10808999-10809018 None:intergenic 55.0%
!! GGATGGCTTGCTGGTGTTGT+TGG + chr8_1:10809064-10809083 None:intergenic 55.0%
ACAACACCAGCAAGCCATCC+TGG - chr8_1:10809064-10809083 Msa1178160:intron 55.0%
! ACTGTTCCAGGATGGCTTGC+TGG + chr8_1:10809073-10809092 None:intergenic 55.0%
CTTGCGGTACTGTTCCAGGA+TGG + chr8_1:10809081-10809100 None:intergenic 55.0%
TGGACTTGCGGTACTGTTCC+AGG + chr8_1:10809085-10809104 None:intergenic 55.0%
GTACCGCAAGTCCAGAAACG+CGG - chr8_1:10809091-10809110 Msa1178160:intron 55.0%
AAGTCCAGAAACGCGGTCGA+GGG - chr8_1:10809098-10809117 Msa1178160:intron 55.0%
!!! GTTTTTTCCCGGACCCTGGA+GGG + chr8_1:10809126-10809145 None:intergenic 55.0%
!!! TGTTTTTTCCCGGACCCTGG+AGG + chr8_1:10809127-10809146 None:intergenic 55.0%
GAAGTGAAATGGGCCAGTCC+AGG - chr8_1:10810103-10810122 Msa1178160:intron 55.0%
TGATAAGGCCAAGCCTGGAC+TGG + chr8_1:10810119-10810138 None:intergenic 55.0%
! TCGGCCCCACTCGATTGTTT+TGG - chr8_1:10810412-10810431 Msa1178160:intron 55.0%
TGTCAGGCTTCGACATCTGG+GGG - chr8_1:10812240-10812259 Msa1178160:intron 55.0%
!! TAGCCTGACGGGCTCTTACT+TGG - chr8_1:10812708-10812727 Msa1178160:five_prime_UTR 55.0%
CAACCAAGTAAGAGCCCGTC+AGG + chr8_1:10812714-10812733 None:intergenic 55.0%
CGATGGCTCGCGTAATCGAA+CGG - chr8_1:10812741-10812760 Msa1178160:five_prime_UTR 55.0%
GATGGCTCGCGTAATCGAAC+GGG - chr8_1:10812742-10812761 Msa1178160:five_prime_UTR 55.0%
CCACCAATGACACGACCATC+AGG + chr8_1:10812793-10812812 None:intergenic 55.0%
! CCTGATGGTCGTGTCATTGG+TGG - chr8_1:10812790-10812809 Msa1178160:intron 55.0%
! GATGGTCGTGTCATTGGTGG+AGG - chr8_1:10812793-10812812 Msa1178160:intron 55.0%
! ATCGGGAGCTTTATGTGGGG+TGG - chr8_1:10813432-10813451 Msa1178160:intron 55.0%
! TTTTGTGGCAAGGCGACTCG+TGG - chr8_1:10813889-10813908 Msa1178160:five_prime_UTR 55.0%
! GTGACTCGGGCTTGAAGTTC+TGG - chr8_1:10813971-10813990 Msa1178160:five_prime_UTR 55.0%
! AACCCGGTCTAGGTTTTCCC+TGG + chr8_1:10814108-10814127 None:intergenic 55.0%
GGATCGAGGGGACCAAATGG+CGG - chr8_1:10808736-10808755 Msa1178160:intron 60.0%
GTTGAAGCAGCACCCCCAGA+AGG + chr8_1:10808965-10808984 None:intergenic 60.0%
!! TCTGGGGGTGCTGCTTCAAC+CGG - chr8_1:10808965-10808984 Msa1178160:intron 60.0%
! CGACCGCGTTTCTGGACTTG+CGG + chr8_1:10809097-10809116 None:intergenic 60.0%
CAAGTCCAGAAACGCGGTCG+AGG - chr8_1:10809097-10809116 Msa1178160:intron 60.0%
GAAATGGGCCAGTCCAGGCT+TGG - chr8_1:10810108-10810127 Msa1178160:intron 60.0%
! CGTGTCATTGGTGGAGGCGT+CGG - chr8_1:10812799-10812818 Msa1178160:intron 60.0%
TTGGCCTGCATCGCGTCCAT+TGG - chr8_1:10813599-10813618 Msa1178160:intron 60.0%
!! CGGGCTTGAAGTTCTGGGAG+AGG - chr8_1:10813977-10813996 Msa1178160:five_prime_UTR 60.0%
!! GTCATTGGTGGAGGCGTCGG+TGG - chr8_1:10812802-10812821 Msa1178160:intron 65.0%
GGCGCCCTCGACCGCGTTTC+TGG + chr8_1:10809105-10809124 None:intergenic 75.0%
!!! GCGGTCGAGGGCGCCCTCCA+GGG - chr8_1:10809110-10809129 Msa1178160:intron 80.0%
!!! CGAGGGCGCCCTCCAGGGTC+CGG - chr8_1:10809115-10809134 Msa1178160:intron 80.0%
!!! GAGGGCGCCCTCCAGGGTCC+GGG - chr8_1:10809116-10809135 Msa1178160:intron 80.0%
!!! CGCGGTCGAGGGCGCCCTCC+AGG - chr8_1:10809109-10809128 Msa1178160:intron 85.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 10807249 10814161 10807249 ID=Msa1178160;Name=Msa1178160
chr8_1 mRNA 10807249 10814161 10807249 ID=Msa1178160-mRNA-1;Parent=Msa1178160;Name=Msa1178160-mRNA-1;_AED=0.05;_eAED=0.05;_QI=540|1|1|1|0.8|0.66|6|496|343
chr8_1 exon 10807249 10807984 10807249 ID=Msa1178160-mRNA-1:exon:3790;Parent=Msa1178160-mRNA-1
chr8_1 exon 10808558 10808719 10808558 ID=Msa1178160-mRNA-1:exon:3789;Parent=Msa1178160-mRNA-1
chr8_1 exon 10809132 10809263 10809132 ID=Msa1178160-mRNA-1:exon:3788;Parent=Msa1178160-mRNA-1
chr8_1 exon 10810010 10810077 10810010 ID=Msa1178160-mRNA-1:exon:3787;Parent=Msa1178160-mRNA-1
chr8_1 exon 10812247 10812765 10812247 ID=Msa1178160-mRNA-1:exon:3786;Parent=Msa1178160-mRNA-1
chr8_1 exon 10813711 10814161 10813711 ID=Msa1178160-mRNA-1:exon:3785;Parent=Msa1178160-mRNA-1
chr8_1 five_prime_UTR 10813711 10814161 10813711 ID=Msa1178160-mRNA-1:five_prime_utr;Parent=Msa1178160-mRNA-1
chr8_1 five_prime_UTR 10812677 10812765 10812677 ID=Msa1178160-mRNA-1:five_prime_utr;Parent=Msa1178160-mRNA-1
chr8_1 CDS 10812247 10812676 10812247 ID=Msa1178160-mRNA-1:cds;Parent=Msa1178160-mRNA-1
chr8_1 CDS 10810010 10810077 10810010 ID=Msa1178160-mRNA-1:cds;Parent=Msa1178160-mRNA-1
chr8_1 CDS 10809132 10809263 10809132 ID=Msa1178160-mRNA-1:cds;Parent=Msa1178160-mRNA-1
chr8_1 CDS 10808558 10808719 10808558 ID=Msa1178160-mRNA-1:cds;Parent=Msa1178160-mRNA-1
chr8_1 CDS 10807745 10807984 10807745 ID=Msa1178160-mRNA-1:cds;Parent=Msa1178160-mRNA-1
chr8_1 three_prime_UTR 10807249 10807744 10807249 ID=Msa1178160-mRNA-1:three_prime_utr;Parent=Msa1178160-mRNA-1
Gene Sequence

>Msa1178160

ATGGATCGAGGGGACCAAATGGCGGCATTATCCGGTTCTGCATCATACTTTATGCAGACAGGATTACCTGGTTCTGGAAACCAACATGAATTGCATAATTCCCCTGGTATTCGTCCGCTGAATACCAATTCATCGTTTCAATCAAGTATTGGTGGTGGTGGTACTATTGGATCCACGATGCCGATGGATTCTTCTGGAATTGGATCTCAATGTATCAATGTAGGTGCTCCTTCTGGGGGTGCTGCTTCAACCGGTGAACCTGCCAAAAGGAAGCGTGGAAGGCCTAGAAAATATGGGGCAGATGGAAGTGTGTCGTTAGCATTGACTCCAACAACACCAGCAAGCCATCCTGGAACAGTACCGCAAGTCCAGAAACGCGGTCGAGGGCGCCCTCCAGGGTCCGGGAAAAAACAACAGTTGGCTTCTTTCGGTGGTTTGATCTCTAGTTCAGCTGGAAATGGTTTCACTCCTCATGTCATCTCCATTGCAATTGGAGAAGACATTGCAACAAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAACTATATTTGTTATGTCGGCCAATGGTGCTGTCTCTACTGTGACACTTTGTCAGGCTTCGACATCTGGGGGTTCTGTCACATATGAGGGGCGTTTTGAGATACTTAGCCTGACGGGCTCTTACTTGGTTGCTGATAACGATGGCTCGCGTAATCGAACGGGTTCATTAAGTGTTTCTCTTGCCAGTCCTGATGGTCGTGTCATTGGTGGAGGCGTCGGTGGATTGCTCATTGCTGCAAGTCCTGTTCAGGTGATAATCGGGAGCTTTATGTGGGGTGGACCAAAAACCAAGAACAAGAAGAATGAAGATTCAGAAGATCAAGAAGTTGGTGTAGAGGAAAGTCATCATCATGGAGTTCATAATCCAGTTGCAATGAATAGCATTTCACCAAATCAAAGTCTGACTCCAACATCTCTCAATTCTTGGCCTGCATCGCGTCCATTGGATATGCGTAATTCCCATATGGACATTGATTTAATGCGTGGGTGA
Protein sequence

>Msa1178160

MDRGDQMAALSGSASYFMQTGLPGSGNQHELHNSPGIRPLNTNSSFQSSIGGGGTIGSTMPMDSSGIGSQCINVGAPSGGAASTGEPAKRKRGRPRKYGADGSVSLALTPTTPASHPGTVPQVQKRGRGRPPGSGKKQQLASFGGLISSSAGNGFTPHVISIAIGEDIATKILAFSQQGPRTIFVMSANGAVSTVTLCQASTSGGSVTYEGRFEILSLTGSYLVADNDGSRNRTGSLSVSLASPDGRVIGGGVGGLLIAASPVQVIIGSFMWGGPKTKNKKNEDSEDQEVGVEESHHHGVHNPVAMNSISPNQSLTPTSLNSWPASRPLDMRNSHMDIDLMRG*