AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182640 MtrunA17_Chr1g0209861 96.560 436 15 0 1 436 1 436 0.0 872
Msa0182640 MtrunA17_Chr8g0390971 41.593 452 187 18 9 433 11 412 1.39e-82 259
Msa0182640 MtrunA17_Chr5g0431351 44.144 111 42 3 316 424 124 216 4.58e-19 85.5
Msa0182640 MtrunA17_Chr7g0226451 40.152 132 56 4 316 424 220 351 4.66e-17 82.0
Msa0182640 MtrunA17_Chr4g0071811 46.154 104 44 4 321 424 293 384 4.98e-17 82.4
Msa0182640 MtrunA17_Chr1g0150471 47.561 82 36 2 351 427 221 300 1.75e-12 68.2
Msa0182640 MtrunA17_Chr3g0136701 63.636 55 16 1 370 424 224 274 3.24e-12 67.0
Msa0182640 MtrunA17_Chr7g0220721 69.767 43 13 0 382 424 327 369 6.70e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182640 AT1G25440.1 45.622 434 188 11 6 424 3 403 3.58e-100 305
Msa0182640 AT1G68520.1 42.953 447 187 14 6 429 3 404 1.72e-91 283
Msa0182640 AT1G73870.1 38.532 436 198 18 8 427 9 390 4.15e-65 214
Msa0182640 AT4G25990.1 49.533 107 38 3 318 424 293 383 7.66e-22 97.4
Msa0182640 AT5G57180.2 45.217 115 43 3 318 431 337 432 2.73e-21 95.9
Msa0182640 AT1G49130.1 40.984 122 64 3 15 128 23 144 1.06e-19 90.1
Msa0182640 AT1G49130.1 45.794 107 37 3 319 425 236 321 8.47e-17 81.6
Msa0182640 AT1G49130.2 40.984 122 64 3 15 128 16 137 1.14e-19 89.7
Msa0182640 AT1G49130.2 45.794 107 37 2 319 425 229 314 1.09e-16 81.3
Msa0182640 AT4G25990.2 43.443 122 38 4 318 424 293 398 2.70e-18 87.0
Msa0182640 AT5G14370.1 42.609 115 53 3 316 424 229 336 4.54e-18 85.5
Msa0182640 AT4G25990.3 47.525 101 37 3 318 418 293 377 5.16e-18 85.9
Msa0182640 AT1G07050.1 43.750 128 45 5 303 426 91 195 2.06e-17 80.9
Msa0182640 AT5G57180.1 45.098 102 36 3 318 418 337 419 7.55e-17 82.8
Msa0182640 AT1G07050.2 41.667 120 43 5 303 418 91 187 4.61e-13 68.2
Msa0182640 AT5G24930.1 52.113 71 28 1 360 424 267 337 1.36e-11 66.2
Msa0182640 AT5G15840.1 52.308 65 28 2 1 62 41 105 8.08e-11 63.9

Find 110 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGGTGTTCTTGCCTTCT+TGG 0.140899 1_4:+71361453 None:intergenic
GAAGAATTCATCACCATTAA+TGG 0.149936 1_4:+71361501 None:intergenic
ACAAATCTCCCTTTCATTCT+TGG 0.172964 1_4:+71360069 None:intergenic
ATTATTTATCAGGGAACTTT+TGG 0.202916 1_4:-71360261 Msa0182640:intron
TGAAAATAATGATTATAATA+AGG 0.203891 1_4:-71360795 Msa0182640:CDS
TGAACTTTGAAATATGAATT+TGG 0.210594 1_4:+71361797 None:intergenic
TTCTCATCAGCATCCAAATT+TGG 0.222169 1_4:+71360683 None:intergenic
ATTTGCTAAAAGTAATAATT+TGG 0.227746 1_4:-71359949 Msa0182640:three_prime_UTR
TGGTTTGAGTGAAACTTTAT+TGG 0.235328 1_4:-71359857 Msa0182640:three_prime_UTR
TTGTTAACACCTGACAAATT+AGG 0.244804 1_4:+71361833 None:intergenic
TATGGTGAGTTTGGTGGATA+TGG 0.250845 1_4:-71360219 Msa0182640:CDS
TAATGGTGACAAGCCAAATT+TGG 0.271510 1_4:-71360696 Msa0182640:CDS
CTGCCTCCATCTACCGTTAC+TGG 0.277791 1_4:+71360189 None:intergenic
ATGAGGCGCAACTTCTTTAC+AGG 0.278532 1_4:-71361306 Msa0182640:CDS
GAAAATAATGATTATAATAA+GGG 0.279237 1_4:-71360794 Msa0182640:CDS
GCGTCGTACAAGTCCATTAA+TGG 0.290118 1_4:-71361514 Msa0182640:CDS
ACGGAGGTTCATTATGCTTA+TGG 0.290853 1_4:-71360237 Msa0182640:CDS
CTCAACATCAGCTGCAAATT+CGG 0.302034 1_4:+71361072 None:intergenic
GCAACAGAAGGATCGAAAAT+TGG 0.331767 1_4:+71361280 None:intergenic
CATTATGCTTATGGTGAGTT+TGG 0.336402 1_4:-71360228 Msa0182640:CDS
TTCTTGGTGAAGCCAGAAAA+AGG 0.344434 1_4:+71361469 None:intergenic
GGTTGTTCTCAAAGAAAATA+AGG 0.347288 1_4:-71360125 Msa0182640:CDS
TTTCATCTTGTGCCGGAGTT+AGG 0.348067 1_4:-71361364 Msa0182640:CDS
TTCCCTTCACCTAATTTGTC+AGG 0.352541 1_4:-71361842 Msa0182640:five_prime_UTR
CATTAGTCCAGGGACACTTT+TGG 0.361781 1_4:+71360714 None:intergenic
AGCTGATGTTGAGAGCTTAT+TGG 0.374691 1_4:-71361062 Msa0182640:CDS
AGAAAATAAGGTACGAGGTT+AGG 0.382846 1_4:-71360113 Msa0182640:CDS
GATTAGAAAATGAGTGTATA+GGG 0.387111 1_4:-71361033 Msa0182640:CDS
GCTGATGTTGAGAGCTTATT+GGG 0.387210 1_4:-71361061 Msa0182640:CDS
GGATTAGAAAATGAGTGTAT+AGG 0.395364 1_4:-71361034 Msa0182640:CDS
CAAAAGTGTCCCTGGACTAA+TGG 0.395385 1_4:-71360713 Msa0182640:CDS
TGTCATCCAGTAACGGTAGA+TGG 0.408098 1_4:-71360195 Msa0182640:CDS
GGAGATAATATGATGGAGAT+TGG 0.419606 1_4:-71360905 Msa0182640:CDS
GAAGGCAAGAACACCAAGAC+AGG 0.424009 1_4:-71361449 Msa0182640:CDS
TAGGGAGAGGAAAAGGGAAA+AGG 0.427942 1_4:+71361876 None:intergenic
GCAGAGAGGCAAGGGTTTCA+AGG 0.431755 1_4:-71360170 Msa0182640:CDS
TGTATAGGGATGGAAGAGTT+GGG 0.440723 1_4:-71361019 Msa0182640:CDS
ATAAATTATACCATGCAATC+AGG 0.445629 1_4:+71360656 None:intergenic
TGTTGAGAGCTTATTGGGTA+AGG 0.449331 1_4:-71361056 Msa0182640:CDS
AACTCCGGCACAAGATGAAA+CGG 0.453947 1_4:+71361367 None:intergenic
GATTTGTGTTTCCCCTGTCT+TGG 0.455579 1_4:+71361436 None:intergenic
TGAAAGGGAGATTTGTGAAG+AGG 0.460030 1_4:-71360062 Msa0182640:CDS
ATTTGGATGCTGATGAGAAC+TGG 0.465263 1_4:-71360679 Msa0182640:CDS
GGTGTTAACAAAATAATATA+AGG 0.471335 1_4:-71361821 Msa0182640:five_prime_UTR
GTGTATAGGGATGGAAGAGT+TGG 0.474392 1_4:-71361020 Msa0182640:CDS
TGGCTTGTCACCATTAGTCC+AGG 0.479305 1_4:+71360703 None:intergenic
AGTGAGAAGTGGAAGTGTAG+TGG 0.486251 1_4:-71360971 Msa0182640:CDS
CCTTCAGTTGGTTCAACTGA+AGG 0.490709 1_4:-71361238 Msa0182640:CDS
TGTACTAGTCCTCCTTCAGT+TGG 0.493939 1_4:-71361250 Msa0182640:CDS
CTGTTGGAGGCAAAACTGCT+AGG 0.494037 1_4:-71361675 Msa0182640:CDS
AGTGGAAAGGTGAAGGAAGA+AGG 0.494618 1_4:-71360953 Msa0182640:CDS
GTTGAGAGCTTATTGGGTAA+GGG 0.499986 1_4:-71361055 Msa0182640:CDS
TATGCTTATGGTGAGTTTGG+TGG 0.509644 1_4:-71360225 Msa0182640:CDS
AGAGAGCTATGAAATTGTTG+AGG 0.512413 1_4:-71360927 Msa0182640:CDS
AGATGGAGGCAGAGAGGCAA+GGG 0.513332 1_4:-71360178 Msa0182640:CDS
GAAAGGGAGATTTGTGAAGA+GGG 0.514753 1_4:-71360061 Msa0182640:CDS
GAGAAGAGACCAAGAATGAA+AGG 0.514881 1_4:-71360078 Msa0182640:CDS
ATATTATTATTATTCCTCGC+TGG 0.519712 1_4:+71361391 None:intergenic
GAGAGCTATGAAATTGTTGA+GGG 0.520749 1_4:-71360926 Msa0182640:CDS
GGGATAGCCAAAAGTGTCCC+TGG 0.521182 1_4:-71360721 Msa0182640:CDS
GGTTCAACTGAAGGAGGACT+AGG 0.524616 1_4:-71361229 Msa0182640:CDS
ACTCCGGCACAAGATGAAAC+GGG 0.530371 1_4:+71361368 None:intergenic
AACTGTTTATATATACAAAG+TGG 0.532808 1_4:+71359889 None:intergenic
CACCTGACAAATTAGGTGAA+GGG 0.550785 1_4:+71361840 None:intergenic
AACGTAGCAAACGCTGTTGG+AGG 0.555203 1_4:-71361688 Msa0182640:CDS
TTCTCATGAAACACTTGAAG+AGG 0.559028 1_4:-71360843 Msa0182640:CDS
AAATTCACATGACGAAAATG+AGG 0.559316 1_4:-71361323 Msa0182640:CDS
ATGATGCAGTAATCATTGCA+TGG 0.567325 1_4:-71360742 Msa0182640:CDS
AGAAGAGACCAAGAATGAAA+GGG 0.570209 1_4:-71360077 Msa0182640:CDS
GAAGTGTAGTGGAAAGGTGA+AGG 0.573136 1_4:-71360960 Msa0182640:CDS
TCGGCTAATTCAATATCAGA+TGG 0.576056 1_4:+71361091 None:intergenic
TGATGCAGTAATCATTGCAT+GGG 0.576146 1_4:-71360741 Msa0182640:CDS
AGCATGAGGAGAGTGAGAAG+TGG 0.578354 1_4:-71360982 Msa0182640:CDS
CCTCGCTGGTTCACTGCTCG+AGG 0.578376 1_4:+71361405 None:intergenic
TAGATGGAGGCAGAGAGGCA+AGG 0.578587 1_4:-71360179 Msa0182640:CDS
GGCTTGTCACCATTAGTCCA+GGG 0.579867 1_4:+71360704 None:intergenic
TGTTGAGGGAGATAATATGA+TGG 0.580179 1_4:-71360912 Msa0182640:CDS
AAAATAATGATTATAATAAG+GGG 0.580910 1_4:-71360793 Msa0182640:CDS
TGTTGGAGGCAAAACTGCTA+GGG 0.581207 1_4:-71361674 Msa0182640:CDS
TCAGTTGGTTCAACTGAAGG+AGG 0.585447 1_4:-71361235 Msa0182640:CDS
ACACCTGACAAATTAGGTGA+AGG 0.585651 1_4:+71361839 None:intergenic
AGAAAATGAGTGTATAGGGA+TGG 0.586862 1_4:-71361029 Msa0182640:CDS
TATCCCGTTTCATCTTGTGC+CGG 0.588273 1_4:-71361371 Msa0182640:CDS
TGAAACACTTGAAGAGGTGA+AGG 0.588313 1_4:-71360837 Msa0182640:CDS
TAGTGATAATAATTATGAGA+TGG 0.589411 1_4:-71361134 Msa0182640:CDS
ACTGTTTATATATACAAAGT+GGG 0.590451 1_4:+71359890 None:intergenic
GGTGATGAATTCTTCAATTG+TGG 0.591451 1_4:-71361493 Msa0182640:CDS
AGGAAATGTTGGAACTGCAA+AGG 0.601959 1_4:+71360035 None:intergenic
CCTTCAGTTGAACCAACTGA+AGG 0.603328 1_4:+71361238 None:intergenic
TGAGAACTGGCCTGATTGCA+TGG 0.605682 1_4:-71360666 Msa0182640:intron
TCAGTTGAACCAACTGAAGG+AGG 0.611596 1_4:+71361241 None:intergenic
GAAGAGGTGAAGGTGAAGTG+TGG 0.614664 1_4:-71360827 Msa0182640:CDS
ATTGATTGATACAAAGCATG+AGG 0.625826 1_4:-71360996 Msa0182640:CDS
GTACATAATTCAGCAACAGA+AGG 0.631423 1_4:+71361268 None:intergenic
CTCAAAGAAAATAAGGTACG+AGG 0.632554 1_4:-71360118 Msa0182640:CDS
AACGGTAGATGGAGGCAGAG+AGG 0.643178 1_4:-71360184 Msa0182640:CDS
ACAGAGAAAAGCGAAGAACA+AGG 0.643427 1_4:-71360146 Msa0182640:CDS
GCTAATTCAATATCAGATGG+AGG 0.647941 1_4:+71361094 None:intergenic
AGGCAAGAACACCAAGACAG+GGG 0.648532 1_4:-71361447 Msa0182640:CDS
ATAAGAGCTAGCATTTGTTG+CGG 0.651324 1_4:-71360000 Msa0182640:three_prime_UTR
GAAGTGGAAGTGTAGTGGAA+AGG 0.652932 1_4:-71360966 Msa0182640:CDS
AAGGCAAGAACACCAAGACA+GGG 0.653824 1_4:-71361448 Msa0182640:CDS
ACTTCATCGAAACCTAACTC+CGG 0.656115 1_4:+71361352 None:intergenic
AACTGAAGGAGGACTAGGAG+TGG 0.656485 1_4:-71361224 Msa0182640:CDS
ATATGGATGTCATCCAGTAA+CGG 0.662808 1_4:-71360202 Msa0182640:CDS
TGAGGCGCAACTTCTTTACA+GGG 0.664773 1_4:-71361305 Msa0182640:CDS
AGCGAAAGCAGAGTTCAACT+AGG 0.665722 1_4:-71361157 Msa0182640:CDS
CATCCAGTAACGGTAGATGG+AGG 0.676181 1_4:-71360192 Msa0182640:CDS
CCTCGAGCAGTGAACCAGCG+AGG 0.723417 1_4:-71361405 Msa0182640:CDS
GCATAACAAAGAGAGCACGT+TGG 0.777160 1_4:-71361639 Msa0182640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATAATGATTATAATA+AGG - chr1_4:71360925-71360944 Msa0182640:CDS 10.0%
!! GAAAATAATGATTATAATAA+GGG - chr1_4:71360926-71360945 Msa0182640:CDS 10.0%
!! AAAATAATGATTATAATAAG+GGG - chr1_4:71360927-71360946 Msa0182640:CDS 10.0%
!! AAAATATCTAAATGTATATT+TGG + chr1_4:71361214-71361233 None:intergenic 10.0%
!! TGAAAATAATGATTATAATA+AGG - chr1_4:71360925-71360944 Msa0182640:CDS 10.0%
!! GAAAATAATGATTATAATAA+GGG - chr1_4:71360926-71360945 Msa0182640:CDS 10.0%
!! AAAATAATGATTATAATAAG+GGG - chr1_4:71360927-71360946 Msa0182640:CDS 10.0%
!! AAAATATCTAAATGTATATT+TGG + chr1_4:71361214-71361233 None:intergenic 10.0%
!!! TATATCTTAATTTTTCTTCA+TGG - chr1_4:71361084-71361103 Msa0182640:CDS 15.0%
!! AATACTAACAAAAAAGATTA+GGG + chr1_4:71361754-71361773 None:intergenic 15.0%
!! AAATACTAACAAAAAAGATT+AGG + chr1_4:71361755-71361774 None:intergenic 15.0%
!!! ATTTGCTAAAAGTAATAATT+TGG - chr1_4:71361771-71361790 Msa0182640:five_prime_UTR 15.0%
!!! TATATCTTAATTTTTCTTCA+TGG - chr1_4:71361084-71361103 Msa0182640:CDS 15.0%
!! AATACTAACAAAAAAGATTA+GGG + chr1_4:71361754-71361773 None:intergenic 15.0%
!! AAATACTAACAAAAAAGATT+AGG + chr1_4:71361755-71361774 None:intergenic 15.0%
!!! ATTTGCTAAAAGTAATAATT+TGG - chr1_4:71361771-71361790 Msa0182640:five_prime_UTR 15.0%
!!! AAGGGAATACAATTATTTTA+GGG + chr1_4:71359865-71359884 None:intergenic 20.0%
!! GGTGTTAACAAAATAATATA+AGG - chr1_4:71359899-71359918 Msa0182640:three_prime_UTR 20.0%
!!! TGAACTTTGAAATATGAATT+TGG + chr1_4:71359926-71359945 None:intergenic 20.0%
!! TAGTGATAATAATTATGAGA+TGG - chr1_4:71360586-71360605 Msa0182640:intron 20.0%
!! TTTACTGTTAGATTAATCAT+TGG - chr1_4:71361363-71361382 Msa0182640:CDS 20.0%
!!! CTGTCTATCAAATTTTATAA+AGG - chr1_4:71361396-71361415 Msa0182640:CDS 20.0%
!! ATACTAACAAAAAAGATTAG+GGG + chr1_4:71361753-71361772 None:intergenic 20.0%
!! ACTGTTTATATATACAAAGT+GGG + chr1_4:71361833-71361852 None:intergenic 20.0%
!! AACTGTTTATATATACAAAG+TGG + chr1_4:71361834-71361853 None:intergenic 20.0%
!!! AAGGGAATACAATTATTTTA+GGG + chr1_4:71359865-71359884 None:intergenic 20.0%
!! GGTGTTAACAAAATAATATA+AGG - chr1_4:71359899-71359918 Msa0182640:three_prime_UTR 20.0%
!!! TGAACTTTGAAATATGAATT+TGG + chr1_4:71359926-71359945 None:intergenic 20.0%
!! TAGTGATAATAATTATGAGA+TGG - chr1_4:71360586-71360605 Msa0182640:intron 20.0%
!! TTTACTGTTAGATTAATCAT+TGG - chr1_4:71361363-71361382 Msa0182640:CDS 20.0%
!!! CTGTCTATCAAATTTTATAA+AGG - chr1_4:71361396-71361415 Msa0182640:CDS 20.0%
!! ATACTAACAAAAAAGATTAG+GGG + chr1_4:71361753-71361772 None:intergenic 20.0%
!! ACTGTTTATATATACAAAGT+GGG + chr1_4:71361833-71361852 None:intergenic 20.0%
!! AACTGTTTATATATACAAAG+TGG + chr1_4:71361834-71361853 None:intergenic 20.0%
!!! AATACAATTATTTTAGGGAG+AGG + chr1_4:71359860-71359879 None:intergenic 25.0%
!! GAAGGGAATACAATTATTTT+AGG + chr1_4:71359866-71359885 None:intergenic 25.0%
! ATATTATTATTATTCCTCGC+TGG + chr1_4:71360332-71360351 None:intergenic 25.0%
! GATTAGAAAATGAGTGTATA+GGG - chr1_4:71360687-71360706 Msa0182640:CDS 25.0%
! ATAAATTATACCATGCAATC+AGG + chr1_4:71361067-71361086 None:intergenic 25.0%
! GATACCAATCATTAACTAAA+GGG + chr1_4:71361135-71361154 None:intergenic 25.0%
! TGATACCAATCATTAACTAA+AGG + chr1_4:71361136-71361155 None:intergenic 25.0%
! ATTTGATAGACAGAAAAAAG+TGG + chr1_4:71361389-71361408 None:intergenic 25.0%
!! ATTATTTATCAGGGAACTTT+TGG - chr1_4:71361459-71361478 Msa0182640:CDS 25.0%
!!! TATTTTAGCAAAGGAAATGT+TGG + chr1_4:71361699-71361718 None:intergenic 25.0%
!!! GCTCTTATTTATTTTAGCAA+AGG + chr1_4:71361708-71361727 None:intergenic 25.0%
!!! TATAAACAGTTTTGTGCAAT+TGG - chr1_4:71361843-71361862 Msa0182640:five_prime_UTR 25.0%
!!! AATACAATTATTTTAGGGAG+AGG + chr1_4:71359860-71359879 None:intergenic 25.0%
!! GAAGGGAATACAATTATTTT+AGG + chr1_4:71359866-71359885 None:intergenic 25.0%
! ATATTATTATTATTCCTCGC+TGG + chr1_4:71360332-71360351 None:intergenic 25.0%
! GATTAGAAAATGAGTGTATA+GGG - chr1_4:71360687-71360706 Msa0182640:CDS 25.0%
! ATAAATTATACCATGCAATC+AGG + chr1_4:71361067-71361086 None:intergenic 25.0%
! GATACCAATCATTAACTAAA+GGG + chr1_4:71361135-71361154 None:intergenic 25.0%
! TGATACCAATCATTAACTAA+AGG + chr1_4:71361136-71361155 None:intergenic 25.0%
! ATTTGATAGACAGAAAAAAG+TGG + chr1_4:71361389-71361408 None:intergenic 25.0%
!! ATTATTTATCAGGGAACTTT+TGG - chr1_4:71361459-71361478 Msa0182640:CDS 25.0%
!!! TATTTTAGCAAAGGAAATGT+TGG + chr1_4:71361699-71361718 None:intergenic 25.0%
!!! GCTCTTATTTATTTTAGCAA+AGG + chr1_4:71361708-71361727 None:intergenic 25.0%
!!! TATAAACAGTTTTGTGCAAT+TGG - chr1_4:71361843-71361862 Msa0182640:five_prime_UTR 25.0%
!!! TTATTTTAGGGAGAGGAAAA+GGG + chr1_4:71359853-71359872 None:intergenic 30.0%
!!! ATTATTTTAGGGAGAGGAAA+AGG + chr1_4:71359854-71359873 None:intergenic 30.0%
TTGTTAACACCTGACAAATT+AGG + chr1_4:71359890-71359909 None:intergenic 30.0%
!!! TTGAAGCTATACGTGTTTTT+TGG + chr1_4:71359951-71359970 None:intergenic 30.0%
GAAGAATTCATCACCATTAA+TGG + chr1_4:71360222-71360241 None:intergenic 30.0%
AAATTCACATGACGAAAATG+AGG - chr1_4:71360397-71360416 Msa0182640:intron 30.0%
!!! CTCTCATTGTTTTTAACATC+AGG + chr1_4:71360545-71360564 None:intergenic 30.0%
GGATTAGAAAATGAGTGTAT+AGG - chr1_4:71360686-71360705 Msa0182640:CDS 30.0%
ATTGATTGATACAAAGCATG+AGG - chr1_4:71360724-71360743 Msa0182640:CDS 30.0%
CAATCCCTTTAGTTAATGAT+TGG - chr1_4:71361128-71361147 Msa0182640:CDS 30.0%
GGTTGTTCTCAAAGAAAATA+AGG - chr1_4:71361595-71361614 Msa0182640:CDS 30.0%
TGGTTTGAGTGAAACTTTAT+TGG - chr1_4:71361863-71361882 Msa0182640:five_prime_UTR 30.0%
!!! TTATTTTAGGGAGAGGAAAA+GGG + chr1_4:71359853-71359872 None:intergenic 30.0%
!!! ATTATTTTAGGGAGAGGAAA+AGG + chr1_4:71359854-71359873 None:intergenic 30.0%
TTGTTAACACCTGACAAATT+AGG + chr1_4:71359890-71359909 None:intergenic 30.0%
!!! TTGAAGCTATACGTGTTTTT+TGG + chr1_4:71359951-71359970 None:intergenic 30.0%
GAAGAATTCATCACCATTAA+TGG + chr1_4:71360222-71360241 None:intergenic 30.0%
AAATTCACATGACGAAAATG+AGG - chr1_4:71360397-71360416 Msa0182640:intron 30.0%
!!! CTCTCATTGTTTTTAACATC+AGG + chr1_4:71360545-71360564 None:intergenic 30.0%
GGATTAGAAAATGAGTGTAT+AGG - chr1_4:71360686-71360705 Msa0182640:CDS 30.0%
ATTGATTGATACAAAGCATG+AGG - chr1_4:71360724-71360743 Msa0182640:CDS 30.0%
CAATCCCTTTAGTTAATGAT+TGG - chr1_4:71361128-71361147 Msa0182640:CDS 30.0%
GGTTGTTCTCAAAGAAAATA+AGG - chr1_4:71361595-71361614 Msa0182640:CDS 30.0%
TGGTTTGAGTGAAACTTTAT+TGG - chr1_4:71361863-71361882 Msa0182640:five_prime_UTR 30.0%
GGTGATGAATTCTTCAATTG+TGG - chr1_4:71360227-71360246 Msa0182640:CDS 35.0%
! TTCAATTGTGGTCCTTTTTC+TGG - chr1_4:71360239-71360258 Msa0182640:CDS 35.0%
GTACATAATTCAGCAACAGA+AGG + chr1_4:71360455-71360474 None:intergenic 35.0%
GCTAATTCAATATCAGATGG+AGG + chr1_4:71360629-71360648 None:intergenic 35.0%
TCGGCTAATTCAATATCAGA+TGG + chr1_4:71360632-71360651 None:intergenic 35.0%
AGAAAATGAGTGTATAGGGA+TGG - chr1_4:71360691-71360710 Msa0182640:CDS 35.0%
AGAGAGCTATGAAATTGTTG+AGG - chr1_4:71360793-71360812 Msa0182640:CDS 35.0%
GAGAGCTATGAAATTGTTGA+GGG - chr1_4:71360794-71360813 Msa0182640:CDS 35.0%
TGTTGAGGGAGATAATATGA+TGG - chr1_4:71360808-71360827 Msa0182640:CDS 35.0%
! GGAGATAATATGATGGAGAT+TGG - chr1_4:71360815-71360834 Msa0182640:CDS 35.0%
TTCTCATGAAACACTTGAAG+AGG - chr1_4:71360877-71360896 Msa0182640:CDS 35.0%
ATGATGCAGTAATCATTGCA+TGG - chr1_4:71360978-71360997 Msa0182640:CDS 35.0%
TGATGCAGTAATCATTGCAT+GGG - chr1_4:71360979-71360998 Msa0182640:CDS 35.0%
TAATGGTGACAAGCCAAATT+TGG - chr1_4:71361024-71361043 Msa0182640:CDS 35.0%
TTCTCATCAGCATCCAAATT+TGG + chr1_4:71361040-71361059 None:intergenic 35.0%
! TGTGATTTTTGACACACTCA+TGG - chr1_4:71361183-71361202 Msa0182640:CDS 35.0%
ACAGTAAAAAAGTGAACAGC+AGG + chr1_4:71361351-71361370 None:intergenic 35.0%
!! TTATCAGGGAACTTTTGGAA+CGG - chr1_4:71361464-71361483 Msa0182640:CDS 35.0%
CATTATGCTTATGGTGAGTT+TGG - chr1_4:71361492-71361511 Msa0182640:CDS 35.0%
ATATGGATGTCATCCAGTAA+CGG - chr1_4:71361518-71361537 Msa0182640:CDS 35.0%
CTCAAAGAAAATAAGGTACG+AGG - chr1_4:71361602-71361621 Msa0182640:CDS 35.0%
AGAAAATAAGGTACGAGGTT+AGG - chr1_4:71361607-71361626 Msa0182640:CDS 35.0%
AGAAGAGACCAAGAATGAAA+GGG - chr1_4:71361643-71361662 Msa0182640:CDS 35.0%
ACAAATCTCCCTTTCATTCT+TGG + chr1_4:71361654-71361673 None:intergenic 35.0%
! ATAAGAGCTAGCATTTGTTG+CGG - chr1_4:71361720-71361739 Msa0182640:exon 35.0%
GGTGATGAATTCTTCAATTG+TGG - chr1_4:71360227-71360246 Msa0182640:CDS 35.0%
! TTCAATTGTGGTCCTTTTTC+TGG - chr1_4:71360239-71360258 Msa0182640:CDS 35.0%
GTACATAATTCAGCAACAGA+AGG + chr1_4:71360455-71360474 None:intergenic 35.0%
GCTAATTCAATATCAGATGG+AGG + chr1_4:71360629-71360648 None:intergenic 35.0%
TCGGCTAATTCAATATCAGA+TGG + chr1_4:71360632-71360651 None:intergenic 35.0%
AGAAAATGAGTGTATAGGGA+TGG - chr1_4:71360691-71360710 Msa0182640:CDS 35.0%
AGAGAGCTATGAAATTGTTG+AGG - chr1_4:71360793-71360812 Msa0182640:CDS 35.0%
GAGAGCTATGAAATTGTTGA+GGG - chr1_4:71360794-71360813 Msa0182640:CDS 35.0%
TGTTGAGGGAGATAATATGA+TGG - chr1_4:71360808-71360827 Msa0182640:CDS 35.0%
! GGAGATAATATGATGGAGAT+TGG - chr1_4:71360815-71360834 Msa0182640:CDS 35.0%
TTCTCATGAAACACTTGAAG+AGG - chr1_4:71360877-71360896 Msa0182640:CDS 35.0%
ATGATGCAGTAATCATTGCA+TGG - chr1_4:71360978-71360997 Msa0182640:CDS 35.0%
TGATGCAGTAATCATTGCAT+GGG - chr1_4:71360979-71360998 Msa0182640:CDS 35.0%
TAATGGTGACAAGCCAAATT+TGG - chr1_4:71361024-71361043 Msa0182640:CDS 35.0%
TTCTCATCAGCATCCAAATT+TGG + chr1_4:71361040-71361059 None:intergenic 35.0%
! TGTGATTTTTGACACACTCA+TGG - chr1_4:71361183-71361202 Msa0182640:CDS 35.0%
ACAGTAAAAAAGTGAACAGC+AGG + chr1_4:71361351-71361370 None:intergenic 35.0%
!! TTATCAGGGAACTTTTGGAA+CGG - chr1_4:71361464-71361483 Msa0182640:CDS 35.0%
CATTATGCTTATGGTGAGTT+TGG - chr1_4:71361492-71361511 Msa0182640:CDS 35.0%
ATATGGATGTCATCCAGTAA+CGG - chr1_4:71361518-71361537 Msa0182640:CDS 35.0%
CTCAAAGAAAATAAGGTACG+AGG - chr1_4:71361602-71361621 Msa0182640:CDS 35.0%
AGAAAATAAGGTACGAGGTT+AGG - chr1_4:71361607-71361626 Msa0182640:CDS 35.0%
AGAAGAGACCAAGAATGAAA+GGG - chr1_4:71361643-71361662 Msa0182640:CDS 35.0%
ACAAATCTCCCTTTCATTCT+TGG + chr1_4:71361654-71361673 None:intergenic 35.0%
! ATAAGAGCTAGCATTTGTTG+CGG - chr1_4:71361720-71361739 Msa0182640:exon 35.0%
! TTCCCTTCACCTAATTTGTC+AGG - chr1_4:71359878-71359897 Msa0182640:three_prime_UTR 40.0%
CACCTGACAAATTAGGTGAA+GGG + chr1_4:71359883-71359902 None:intergenic 40.0%
ACACCTGACAAATTAGGTGA+AGG + chr1_4:71359884-71359903 None:intergenic 40.0%
AAAAACGTAGCAAACGCTGT+TGG - chr1_4:71360029-71360048 Msa0182640:CDS 40.0%
TTCTTGGTGAAGCCAGAAAA+AGG + chr1_4:71360254-71360273 None:intergenic 40.0%
!!! TTTTTCTGGCTTCACCAAGA+AGG - chr1_4:71360253-71360272 Msa0182640:intron 40.0%
ACTTCATCGAAACCTAACTC+CGG + chr1_4:71360371-71360390 None:intergenic 40.0%
GCAACAGAAGGATCGAAAAT+TGG + chr1_4:71360443-71360462 None:intergenic 40.0%
CTCAACATCAGCTGCAAATT+CGG + chr1_4:71360651-71360670 None:intergenic 40.0%
AGCTGATGTTGAGAGCTTAT+TGG - chr1_4:71360658-71360677 Msa0182640:intron 40.0%
GCTGATGTTGAGAGCTTATT+GGG - chr1_4:71360659-71360678 Msa0182640:intron 40.0%
TGTTGAGAGCTTATTGGGTA+AGG - chr1_4:71360664-71360683 Msa0182640:intron 40.0%
GTTGAGAGCTTATTGGGTAA+GGG - chr1_4:71360665-71360684 Msa0182640:intron 40.0%
TGTATAGGGATGGAAGAGTT+GGG - chr1_4:71360701-71360720 Msa0182640:CDS 40.0%
TGAAACACTTGAAGAGGTGA+AGG - chr1_4:71360883-71360902 Msa0182640:CDS 40.0%
ATTTGGATGCTGATGAGAAC+TGG - chr1_4:71361041-71361060 Msa0182640:CDS 40.0%
CTTTACAACACTTGCACACA+CGG - chr1_4:71361302-71361321 Msa0182640:CDS 40.0%
ACGGAGGTTCATTATGCTTA+TGG - chr1_4:71361483-71361502 Msa0182640:CDS 40.0%
TATGCTTATGGTGAGTTTGG+TGG - chr1_4:71361495-71361514 Msa0182640:CDS 40.0%
! TATGGTGAGTTTGGTGGATA+TGG - chr1_4:71361501-71361520 Msa0182640:CDS 40.0%
ACAGAGAAAAGCGAAGAACA+AGG - chr1_4:71361574-71361593 Msa0182640:CDS 40.0%
GAGAAGAGACCAAGAATGAA+AGG - chr1_4:71361642-71361661 Msa0182640:CDS 40.0%
TGAAAGGGAGATTTGTGAAG+AGG - chr1_4:71361658-71361677 Msa0182640:CDS 40.0%
GAAAGGGAGATTTGTGAAGA+GGG - chr1_4:71361659-71361678 Msa0182640:CDS 40.0%
AGGAAATGTTGGAACTGCAA+AGG + chr1_4:71361688-71361707 None:intergenic 40.0%
! TTCCCTTCACCTAATTTGTC+AGG - chr1_4:71359878-71359897 Msa0182640:three_prime_UTR 40.0%
CACCTGACAAATTAGGTGAA+GGG + chr1_4:71359883-71359902 None:intergenic 40.0%
ACACCTGACAAATTAGGTGA+AGG + chr1_4:71359884-71359903 None:intergenic 40.0%
AAAAACGTAGCAAACGCTGT+TGG - chr1_4:71360029-71360048 Msa0182640:CDS 40.0%
TTCTTGGTGAAGCCAGAAAA+AGG + chr1_4:71360254-71360273 None:intergenic 40.0%
!!! TTTTTCTGGCTTCACCAAGA+AGG - chr1_4:71360253-71360272 Msa0182640:intron 40.0%
ACTTCATCGAAACCTAACTC+CGG + chr1_4:71360371-71360390 None:intergenic 40.0%
GCAACAGAAGGATCGAAAAT+TGG + chr1_4:71360443-71360462 None:intergenic 40.0%
CTCAACATCAGCTGCAAATT+CGG + chr1_4:71360651-71360670 None:intergenic 40.0%
AGCTGATGTTGAGAGCTTAT+TGG - chr1_4:71360658-71360677 Msa0182640:intron 40.0%
GCTGATGTTGAGAGCTTATT+GGG - chr1_4:71360659-71360678 Msa0182640:intron 40.0%
TGTTGAGAGCTTATTGGGTA+AGG - chr1_4:71360664-71360683 Msa0182640:intron 40.0%
GTTGAGAGCTTATTGGGTAA+GGG - chr1_4:71360665-71360684 Msa0182640:intron 40.0%
TGTATAGGGATGGAAGAGTT+GGG - chr1_4:71360701-71360720 Msa0182640:CDS 40.0%
TGAAACACTTGAAGAGGTGA+AGG - chr1_4:71360883-71360902 Msa0182640:CDS 40.0%
ATTTGGATGCTGATGAGAAC+TGG - chr1_4:71361041-71361060 Msa0182640:CDS 40.0%
CTTTACAACACTTGCACACA+CGG - chr1_4:71361302-71361321 Msa0182640:CDS 40.0%
ACGGAGGTTCATTATGCTTA+TGG - chr1_4:71361483-71361502 Msa0182640:CDS 40.0%
TATGCTTATGGTGAGTTTGG+TGG - chr1_4:71361495-71361514 Msa0182640:CDS 40.0%
! TATGGTGAGTTTGGTGGATA+TGG - chr1_4:71361501-71361520 Msa0182640:CDS 40.0%
ACAGAGAAAAGCGAAGAACA+AGG - chr1_4:71361574-71361593 Msa0182640:CDS 40.0%
GAGAAGAGACCAAGAATGAA+AGG - chr1_4:71361642-71361661 Msa0182640:CDS 40.0%
TGAAAGGGAGATTTGTGAAG+AGG - chr1_4:71361658-71361677 Msa0182640:CDS 40.0%
GAAAGGGAGATTTGTGAAGA+GGG - chr1_4:71361659-71361678 Msa0182640:CDS 40.0%
AGGAAATGTTGGAACTGCAA+AGG + chr1_4:71361688-71361707 None:intergenic 40.0%
TAGGGAGAGGAAAAGGGAAA+AGG + chr1_4:71359847-71359866 None:intergenic 45.0%
TGTTGGAGGCAAAACTGCTA+GGG - chr1_4:71360046-71360065 Msa0182640:CDS 45.0%
! GCATAACAAAGAGAGCACGT+TGG - chr1_4:71360081-71360100 Msa0182640:CDS 45.0%
GCGTCGTACAAGTCCATTAA+TGG - chr1_4:71360206-71360225 Msa0182640:CDS 45.0%
!! TCTTGGTGTTCTTGCCTTCT+TGG + chr1_4:71360270-71360289 None:intergenic 45.0%
AAGGCAAGAACACCAAGACA+GGG - chr1_4:71360272-71360291 Msa0182640:intron 45.0%
GATTTGTGTTTCCCCTGTCT+TGG + chr1_4:71360287-71360306 None:intergenic 45.0%
TATCCCGTTTCATCTTGTGC+CGG - chr1_4:71360349-71360368 Msa0182640:intron 45.0%
AACTCCGGCACAAGATGAAA+CGG + chr1_4:71360356-71360375 None:intergenic 45.0%
TTTCATCTTGTGCCGGAGTT+AGG - chr1_4:71360356-71360375 Msa0182640:intron 45.0%
ATGAGGCGCAACTTCTTTAC+AGG - chr1_4:71360414-71360433 Msa0182640:intron 45.0%
TGAGGCGCAACTTCTTTACA+GGG - chr1_4:71360415-71360434 Msa0182640:intron 45.0%
TGTACTAGTCCTCCTTCAGT+TGG - chr1_4:71360470-71360489 Msa0182640:intron 45.0%
TCAGTTGAACCAACTGAAGG+AGG + chr1_4:71360482-71360501 None:intergenic 45.0%
CCTTCAGTTGAACCAACTGA+AGG + chr1_4:71360485-71360504 None:intergenic 45.0%
! CCTTCAGTTGGTTCAACTGA+AGG - chr1_4:71360482-71360501 Msa0182640:intron 45.0%
! TCAGTTGGTTCAACTGAAGG+AGG - chr1_4:71360485-71360504 Msa0182640:intron 45.0%
AGCGAAAGCAGAGTTCAACT+AGG - chr1_4:71360563-71360582 Msa0182640:intron 45.0%
GTGTATAGGGATGGAAGAGT+TGG - chr1_4:71360700-71360719 Msa0182640:CDS 45.0%
! AGTGAGAAGTGGAAGTGTAG+TGG - chr1_4:71360749-71360768 Msa0182640:CDS 45.0%
! GAAGTGGAAGTGTAGTGGAA+AGG - chr1_4:71360754-71360773 Msa0182640:CDS 45.0%
! GAAGTGTAGTGGAAAGGTGA+AGG - chr1_4:71360760-71360779 Msa0182640:CDS 45.0%
AGTGGAAAGGTGAAGGAAGA+AGG - chr1_4:71360767-71360786 Msa0182640:CDS 45.0%
! CATTAGTCCAGGGACACTTT+TGG + chr1_4:71361009-71361028 None:intergenic 45.0%
!! CAAAAGTGTCCCTGGACTAA+TGG - chr1_4:71361007-71361026 Msa0182640:CDS 45.0%
GCAGGTCTAACACAAGTGAA+TGG + chr1_4:71361333-71361352 None:intergenic 45.0%
TGTCATCCAGTAACGGTAGA+TGG - chr1_4:71361525-71361544 Msa0182640:CDS 45.0%
TAGGGAGAGGAAAAGGGAAA+AGG + chr1_4:71359847-71359866 None:intergenic 45.0%
TGTTGGAGGCAAAACTGCTA+GGG - chr1_4:71360046-71360065 Msa0182640:CDS 45.0%
! GCATAACAAAGAGAGCACGT+TGG - chr1_4:71360081-71360100 Msa0182640:CDS 45.0%
GCGTCGTACAAGTCCATTAA+TGG - chr1_4:71360206-71360225 Msa0182640:CDS 45.0%
!! TCTTGGTGTTCTTGCCTTCT+TGG + chr1_4:71360270-71360289 None:intergenic 45.0%
AAGGCAAGAACACCAAGACA+GGG - chr1_4:71360272-71360291 Msa0182640:intron 45.0%
GATTTGTGTTTCCCCTGTCT+TGG + chr1_4:71360287-71360306 None:intergenic 45.0%
TATCCCGTTTCATCTTGTGC+CGG - chr1_4:71360349-71360368 Msa0182640:intron 45.0%
AACTCCGGCACAAGATGAAA+CGG + chr1_4:71360356-71360375 None:intergenic 45.0%
TTTCATCTTGTGCCGGAGTT+AGG - chr1_4:71360356-71360375 Msa0182640:intron 45.0%
ATGAGGCGCAACTTCTTTAC+AGG - chr1_4:71360414-71360433 Msa0182640:intron 45.0%
TGAGGCGCAACTTCTTTACA+GGG - chr1_4:71360415-71360434 Msa0182640:intron 45.0%
TGTACTAGTCCTCCTTCAGT+TGG - chr1_4:71360470-71360489 Msa0182640:intron 45.0%
TCAGTTGAACCAACTGAAGG+AGG + chr1_4:71360482-71360501 None:intergenic 45.0%
CCTTCAGTTGAACCAACTGA+AGG + chr1_4:71360485-71360504 None:intergenic 45.0%
! CCTTCAGTTGGTTCAACTGA+AGG - chr1_4:71360482-71360501 Msa0182640:intron 45.0%
! TCAGTTGGTTCAACTGAAGG+AGG - chr1_4:71360485-71360504 Msa0182640:intron 45.0%
AGCGAAAGCAGAGTTCAACT+AGG - chr1_4:71360563-71360582 Msa0182640:intron 45.0%
GTGTATAGGGATGGAAGAGT+TGG - chr1_4:71360700-71360719 Msa0182640:CDS 45.0%
! AGTGAGAAGTGGAAGTGTAG+TGG - chr1_4:71360749-71360768 Msa0182640:CDS 45.0%
! GAAGTGGAAGTGTAGTGGAA+AGG - chr1_4:71360754-71360773 Msa0182640:CDS 45.0%
! GAAGTGTAGTGGAAAGGTGA+AGG - chr1_4:71360760-71360779 Msa0182640:CDS 45.0%
AGTGGAAAGGTGAAGGAAGA+AGG - chr1_4:71360767-71360786 Msa0182640:CDS 45.0%
! CATTAGTCCAGGGACACTTT+TGG + chr1_4:71361009-71361028 None:intergenic 45.0%
!! CAAAAGTGTCCCTGGACTAA+TGG - chr1_4:71361007-71361026 Msa0182640:CDS 45.0%
GCAGGTCTAACACAAGTGAA+TGG + chr1_4:71361333-71361352 None:intergenic 45.0%
TGTCATCCAGTAACGGTAGA+TGG - chr1_4:71361525-71361544 Msa0182640:CDS 45.0%
!!! TTTTAATTTAATTATTTATC+AGG - chr1_4:71361449-71361468 Msa0182640:CDS 5.0%
!!! TTTAATTTAATTATTTATCA+GGG - chr1_4:71361450-71361469 Msa0182640:CDS 5.0%
!!! TTTTAATTTAATTATTTATC+AGG - chr1_4:71361449-71361468 Msa0182640:CDS 5.0%
!!! TTTAATTTAATTATTTATCA+GGG - chr1_4:71361450-71361469 Msa0182640:CDS 5.0%
AACGTAGCAAACGCTGTTGG+AGG - chr1_4:71360032-71360051 Msa0182640:CDS 50.0%
CTGTTGGAGGCAAAACTGCT+AGG - chr1_4:71360045-71360064 Msa0182640:CDS 50.0%
GAAGGCAAGAACACCAAGAC+AGG - chr1_4:71360271-71360290 Msa0182640:intron 50.0%
AGGCAAGAACACCAAGACAG+GGG - chr1_4:71360273-71360292 Msa0182640:intron 50.0%
ACTCCGGCACAAGATGAAAC+GGG + chr1_4:71360355-71360374 None:intergenic 50.0%
GGTTCAACTGAAGGAGGACT+AGG - chr1_4:71360491-71360510 Msa0182640:intron 50.0%
AACTGAAGGAGGACTAGGAG+TGG - chr1_4:71360496-71360515 Msa0182640:intron 50.0%
AGCATGAGGAGAGTGAGAAG+TGG - chr1_4:71360738-71360757 Msa0182640:CDS 50.0%
GAAGAGGTGAAGGTGAAGTG+TGG - chr1_4:71360893-71360912 Msa0182640:CDS 50.0%
GGCTTGTCACCATTAGTCCA+GGG + chr1_4:71361019-71361038 None:intergenic 50.0%
! TGGCTTGTCACCATTAGTCC+AGG + chr1_4:71361020-71361039 None:intergenic 50.0%
! TGAGAACTGGCCTGATTGCA+TGG - chr1_4:71361054-71361073 Msa0182640:CDS 50.0%
!!! TCAGGGAACTTTTGGAACGG+AGG - chr1_4:71361467-71361486 Msa0182640:CDS 50.0%
CATCCAGTAACGGTAGATGG+AGG - chr1_4:71361528-71361547 Msa0182640:CDS 50.0%
AACGTAGCAAACGCTGTTGG+AGG - chr1_4:71360032-71360051 Msa0182640:CDS 50.0%
CTGTTGGAGGCAAAACTGCT+AGG - chr1_4:71360045-71360064 Msa0182640:CDS 50.0%
GAAGGCAAGAACACCAAGAC+AGG - chr1_4:71360271-71360290 Msa0182640:intron 50.0%
AGGCAAGAACACCAAGACAG+GGG - chr1_4:71360273-71360292 Msa0182640:intron 50.0%
ACTCCGGCACAAGATGAAAC+GGG + chr1_4:71360355-71360374 None:intergenic 50.0%
GGTTCAACTGAAGGAGGACT+AGG - chr1_4:71360491-71360510 Msa0182640:intron 50.0%
AACTGAAGGAGGACTAGGAG+TGG - chr1_4:71360496-71360515 Msa0182640:intron 50.0%
AGCATGAGGAGAGTGAGAAG+TGG - chr1_4:71360738-71360757 Msa0182640:CDS 50.0%
GAAGAGGTGAAGGTGAAGTG+TGG - chr1_4:71360893-71360912 Msa0182640:CDS 50.0%
GGCTTGTCACCATTAGTCCA+GGG + chr1_4:71361019-71361038 None:intergenic 50.0%
! TGGCTTGTCACCATTAGTCC+AGG + chr1_4:71361020-71361039 None:intergenic 50.0%
! TGAGAACTGGCCTGATTGCA+TGG - chr1_4:71361054-71361073 Msa0182640:CDS 50.0%
!!! TCAGGGAACTTTTGGAACGG+AGG - chr1_4:71361467-71361486 Msa0182640:CDS 50.0%
CATCCAGTAACGGTAGATGG+AGG - chr1_4:71361528-71361547 Msa0182640:CDS 50.0%
!! GGGATAGCCAAAAGTGTCCC+TGG - chr1_4:71360999-71361018 Msa0182640:CDS 55.0%
CTGCCTCCATCTACCGTTAC+TGG + chr1_4:71361534-71361553 None:intergenic 55.0%
AACGGTAGATGGAGGCAGAG+AGG - chr1_4:71361536-71361555 Msa0182640:CDS 55.0%
TAGATGGAGGCAGAGAGGCA+AGG - chr1_4:71361541-71361560 Msa0182640:CDS 55.0%
AGATGGAGGCAGAGAGGCAA+GGG - chr1_4:71361542-71361561 Msa0182640:CDS 55.0%
GCAGAGAGGCAAGGGTTTCA+AGG - chr1_4:71361550-71361569 Msa0182640:CDS 55.0%
!! GGGATAGCCAAAAGTGTCCC+TGG - chr1_4:71360999-71361018 Msa0182640:CDS 55.0%
CTGCCTCCATCTACCGTTAC+TGG + chr1_4:71361534-71361553 None:intergenic 55.0%
AACGGTAGATGGAGGCAGAG+AGG - chr1_4:71361536-71361555 Msa0182640:CDS 55.0%
TAGATGGAGGCAGAGAGGCA+AGG - chr1_4:71361541-71361560 Msa0182640:CDS 55.0%
AGATGGAGGCAGAGAGGCAA+GGG - chr1_4:71361542-71361561 Msa0182640:CDS 55.0%
GCAGAGAGGCAAGGGTTTCA+AGG - chr1_4:71361550-71361569 Msa0182640:CDS 55.0%
!! CCTCGCTGGTTCACTGCTCG+AGG + chr1_4:71360318-71360337 None:intergenic 65.0%
CCTCGAGCAGTGAACCAGCG+AGG - chr1_4:71360315-71360334 Msa0182640:intron 65.0%
!! CCTCGCTGGTTCACTGCTCG+AGG + chr1_4:71360318-71360337 None:intergenic 65.0%
CCTCGAGCAGTGAACCAGCG+AGG - chr1_4:71360315-71360334 Msa0182640:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 71359842 71361900 71359842 ID=Msa0182640;Name=Msa0182640
chr1_4 mRNA 71359842 71361900 71359842 ID=Msa0182640-mRNA-1;Parent=Msa0182640;Name=Msa0182640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=172|1|1|1|1|1|2|181|436
chr1_4 exon 71359842 71360271 71359842 ID=Msa0182640-mRNA-1:exon:23905;Parent=Msa0182640-mRNA-1
chr1_4 exon 71360667 71361900 71360667 ID=Msa0182640-mRNA-1:exon:23904;Parent=Msa0182640-mRNA-1
chr1_4 five_prime_UTR 71361729 71361900 71361729 ID=Msa0182640-mRNA-1:five_prime_utr;Parent=Msa0182640-mRNA-1
chr1_4 CDS 71360667 71361728 71360667 ID=Msa0182640-mRNA-1:cds;Parent=Msa0182640-mRNA-1
chr1_4 CDS 71360023 71360271 71360023 ID=Msa0182640-mRNA-1:cds;Parent=Msa0182640-mRNA-1
chr1_4 three_prime_UTR 71359842 71360022 71359842 ID=Msa0182640-mRNA-1:three_prime_utr;Parent=Msa0182640-mRNA-1
Gene Sequence

>Msa0182640

ATGACTTGTTCTAGTAAAAACGTAGCAAACGCTGTTGGAGGCAAAACTGCTAGGGCTTGTGACAGTTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCTGATGATGCTTTTCTCTGTCAAGCTTGTGACTCTTCTGTTCATTCAGCTAATTCTTTAGCTCGAAGACATGAAAGAGTTCGTTTGAAAACAGCGTCGTACAAGTCCATTAATGGTGATGAATTCTTCAATTGTGGTCCTTTTTCTGGCTTCACCAAGAAGGCAAGAACACCAAGACAGGGGAAACACAAATCAAAATCATCCTCGAGCAGTGAACCAGCGAGGAATAATAATAATATCCCGTTTCATCTTGTGCCGGAGTTAGGTTTCGATGAAGTTAATTCAAATTCACATGACGAAAATGAGGCGCAACTTCTTTACAGGGTACCAATTTTCGATCCTTCTGTTGCTGAATTATGTACTAGTCCTCCTTCAGTTGGTTCAACTGAAGGAGGACTAGGAGTGGTAGTTGTTGCTTCTGCTTTCGCTCCTGATGTTAAAAACAATGAGAGCGAAAGCAGAGTTCAACTAGGTAGTGATAATAATTATGAGATGGAAAGCTTTCACGAGCTTCCTCCATCTGATATTGAATTAGCCGAATTTGCAGCTGATGTTGAGAGCTTATTGGGTAAGGGATTAGAAAATGAGTGTATAGGGATGGAAGAGTTGGGATTGATTGATACAAAGCATGAGGAGAGTGAGAAGTGGAAGTGTAGTGGAAAGGTGAAGGAAGAAGGTGAAGAGAGCTATGAAATTGTTGAGGGAGATAATATGATGGAGATTGGAAAAGAATCTTCATTTGAGTTGAATTTTGATTATGATGATTCTCATGAAACACTTGAAGAGGTGAAGGTGAAGTGTGGAGAACAAAATGAAAATAATGATTATAATAAGGGGAAAAGAAAAATATCTTTGCAGCTAGATTATGATGCAGTAATCATTGCATGGGATAGCCAAAAGTGTCCCTGGACTAATGGTGACAAGCCAAATTTGGATGCTGATGAGAACTGGCCTGATTGCATGGGAACTTTTGGAACGGAGGTTCATTATGCTTATGGTGAGTTTGGTGGATATGGATGTCATCCAGTAACGGTAGATGGAGGCAGAGAGGCAAGGGTTTCAAGGTACAGAGAAAAGCGAAGAACAAGGTTGTTCTCAAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGATTTGTGAAGAGGGCTTCCTTTGCAGTTCCAACATTTCCTTTGCTAAAATAA

Protein sequence

>Msa0182640

MTCSSKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASYKSINGDEFFNCGPFSGFTKKARTPRQGKHKSKSSSSSEPARNNNNIPFHLVPELGFDEVNSNSHDENEAQLLYRVPIFDPSVAELCTSPPSVGSTEGGLGVVVVASAFAPDVKNNESESRVQLGSDNNYEMESFHELPPSDIELAEFAADVESLLGKGLENECIGMEELGLIDTKHEESEKWKCSGKVKEEGEESYEIVEGDNMMEIGKESSFELNFDYDDSHETLEEVKVKCGEQNENNDYNKGKRKISLQLDYDAVIIAWDSQKCPWTNGDKPNLDADENWPDCMGTFGTEVHYAYGEFGGYGCHPVTVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK*