AlfalfaGEDB | Msa0357840

M. sativa cultivar zhongmu-4 / Msa0357840

KEGG: K05115|K05117|K13912
GO: GO:0000003 GO:0000302 GO:0000902 GO:0000904 GO:0001654 GO:0001750 GO:0001764 GO:0001775 GO:0001776 GO:0001779 GO:0001780 GO:0001786 GO:0001817 GO:0001818 GO:0001959 GO:0001961 GO:0001974 GO:0002237 GO:0002262 GO:0002376 GO:0002520 GO:0002521 GO:0002682 GO:0002683 GO:0002684 GO:0002694 GO:0002695 GO:0002696 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004713 GO:0004714 GO:0004888 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005929 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006909 GO:0006928 GO:0006950 GO:0006952 GO:0006954 GO:0006979 GO:0007154 GO:0007155 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007267 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0007548 GO:0007596 GO:0007599 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009636 GO:0009653 GO:0009966 GO:0009967 GO:0009986 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010646 GO:0010647 GO:0010941 GO:0016020 GO:0016021 GO:0016028 GO:0016032 GO:0016043 GO:0016192 GO:0016301 GO:0016310 GO:0016477 GO:0016740 GO:0016772 GO:0016773 GO:0017022 GO:0018108 GO:0018193 GO:0018212 GO:0018995 GO:0019058 GO:0019199 GO:0019538 GO:0019953 GO:0021700 GO:0021885 GO:0022008 GO:0022414 GO:0022610 GO:0023051 GO:0023052 GO:0023056 GO:0030097 GO:0030098 GO:0030100 GO:0030101 GO:0030154 GO:0030168 GO:0030260 GO:0030540 GO:0030900 GO:0031224 GO:0031226 GO:0031589 GO:0031668 GO:0032036 GO:0032496 GO:0032501 GO:0032502 GO:0032504 GO:0032649 GO:0032680 GO:0032689 GO:0032720 GO:0032814 GO:0032816 GO:0032823 GO:0032825 GO:0032879 GO:0032940 GO:0032989 GO:0033554 GO:0033643 GO:0033993 GO:0034097 GO:0034101 GO:0034446 GO:0034599 GO:0034614 GO:0035455 GO:0035457 GO:0035556 GO:0035690 GO:0036211 GO:0038023 GO:0040011 GO:0042060 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042698 GO:0042981 GO:0042995 GO:0043005 GO:0043010 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043277 GO:0043412 GO:0043491 GO:0043523 GO:0043524 GO:0043548 GO:0043657 GO:0044215 GO:0044216 GO:0044217 GO:0044228 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044409 GO:0044419 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044441 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045321 GO:0045595 GO:0045597 GO:0045619 GO:0045621 GO:0045807 GO:0046649 GO:0046660 GO:0046677 GO:0046718 GO:0046903 GO:0046982 GO:0046983 GO:0048010 GO:0048232 GO:0048468 GO:0048469 GO:0048511 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048548 GO:0048549 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048699 GO:0048731 GO:0048771 GO:0048806 GO:0048856 GO:0048869 GO:0048870 GO:0048872 GO:0050764 GO:0050766 GO:0050789 GO:0050793 GO:0050794 GO:0050817 GO:0050865 GO:0050866 GO:0050867 GO:0050878 GO:0050896 GO:0050900 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051241 GO:0051249 GO:0051250 GO:0051251 GO:0051674 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051806 GO:0051828 GO:0051896 GO:0051897 GO:0060041 GO:0060068 GO:0060089 GO:0060322 GO:0060548 GO:0060627 GO:0060759 GO:0060760 GO:0061458 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071216 GO:0071219 GO:0071222 GO:0071236 GO:0071310 GO:0071345 GO:0071396 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072341 GO:0097028 GO:0097237 GO:0097350 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0098657 GO:0120025 GO:0120038 GO:0140096 GO:1901214 GO:1901215 GO:1901564 GO:1901700 GO:1901701 GO:1902105 GO:1902107 GO:1902531 GO:1902533 GO:1903555 GO:1903556 GO:1903706 GO:1903708 GO:2000026 GO:2000106 GO:2000107 GO:2000668 GO:2000669
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357840	KEH33463.1	84.783	230	35	0	17	246	18	247	1.14e-143	412

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357840	sp\|Q39086\|SD17_ARATH	58.009	231	89	3	24	246	613	843	2.41e-83	268

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357840	A0A072UWN7	84.783	230	35	0	17	246	18	247	5.43e-144	412

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007440	Msa0357840	0.814541	1.461607e-51	-8.615850e-47
Msa0015090	Msa0357840	0.810654	1.035235e-50	-8.615850e-47
Msa0015460	Msa0357840	0.817137	3.854065e-52	-8.615850e-47
Msa0015480	Msa0357840	0.834032	3.788811e-56	-8.615850e-47
Msa0028660	Msa0357840	0.823405	1.409792e-53	-8.615850e-47
Msa0037570	Msa0357840	-0.801501	8.739573e-49	-8.615850e-47
Msa0037880	Msa0357840	0.830031	3.691778e-55	-8.615850e-47
Msa0038720	Msa0357840	0.800838	1.194177e-48	-8.615850e-47
Msa0042550	Msa0357840	0.802128	6.499269e-49	-8.615850e-47
Msa0042920	Msa0357840	0.801035	1.088854e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357840	MtrunA17_Chr3g0092301	84.783	230	35	0	17	246	18	247	1.05e-147	412
Msa0357840	MtrunA17_Chr3g0093161	89.083	229	24	1	19	246	587	815	3.90e-142	417
Msa0357840	MtrunA17_Chr3g0078531	71.111	225	63	1	22	246	620	842	7.34e-111	337
Msa0357840	MtrunA17_Chr5g0428101	72.566	226	56	1	21	246	593	812	9.94e-111	336
Msa0357840	MtrunA17_Chr3g0078541	70.667	225	64	1	22	246	623	845	1.32e-110	337
Msa0357840	MtrunA17_Chr3g0078551	70.796	226	65	1	22	246	617	842	2.18e-110	336
Msa0357840	MtrunA17_Chr5g0428111	73.009	226	61	0	21	246	595	820	2.35e-108	330
Msa0357840	MtrunA17_Chr8g0361431	73.246	228	59	1	21	246	576	803	1.15e-107	328
Msa0357840	MtrunA17_Chr3g0078521	69.333	225	67	1	22	246	612	834	1.29e-106	326
Msa0357840	MtrunA17_Chr8g0361281	68.282	227	66	2	21	246	605	826	1.46e-106	326

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0357840	AT1G65790.1	58.009	231	89	3	24	246	613	843	2.45e-84	268
Msa0357840	AT4G23150.1	55.000	220	97	2	24	242	430	648	6.04e-83	261
Msa0357840	AT4G23160.1	55.455	220	96	2	24	242	453	671	1.26e-82	260
Msa0357840	AT4G23280.3	49.609	256	119	4	1	246	361	616	3.79e-82	258
Msa0357840	AT1G65800.1	58.442	231	88	3	24	246	617	847	6.47e-82	262
Msa0357840	AT4G03230.3	56.951	223	92	2	24	242	619	841	1.44e-81	261
Msa0357840	AT4G03230.8	55.462	238	99	3	12	242	611	848	1.75e-81	261
Msa0357840	AT4G03230.7	56.951	223	92	2	24	242	627	849	1.81e-81	261
Msa0357840	AT4G03230.2	56.951	223	92	2	24	242	684	906	2.79e-81	261
Msa0357840	AT4G03230.6	56.951	223	92	2	24	242	684	906	2.79e-81	261

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Find 33 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGATGTATTTAGCTT+TGG	0.395433	3_1:+41732018	Msa0357840:CDS
AATCCATCAGTGGCATATTC+TGG	0.347641	3_1:-41731985	None:intergenic
AATCTTGATGAAGATAAAGA+AGG	0.522740	3_1:-41731724	None:intergenic
AATTGATTGATGATTACTTA+AGG	0.364820	3_1:+41732226	Msa0357840:CDS
ACAATTACAGATGTCATGTT+TGG	0.415170	3_1:-41732327	None:intergenic
ATATAGGGTACATTGCTCGA+TGG	0.650298	3_1:+41731326	None:intergenic
ATGGAAATATTTCTTTATCT+AGG	0.295766	3_1:-41732486	None:intergenic
ATTAAGAAACCAGGTTCTTT+TGG	0.285202	3_1:-41732381	None:intergenic
ATTGATTGATGATTACTTAA+GGG	0.350318	3_1:+41732227	Msa0357840:CDS
GAAAACGATCATAATCTTAT+TGG	0.203863	3_1:+41732096	Msa0357840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGAAATCTTGTTAAAGTTGT+TGG	+	chr3_1:41731443-41731462	Msa0357840:intron	30.0%
TTATCAGTGGAAAGAAAAAC+AGG	+	chr3_1:41732058-41732077	Msa0357840:CDS	30.0%
TATCAGTGGAAAGAAAAACA+GGG	+	chr3_1:41732059-41732078	Msa0357840:CDS	30.0%
ACAATTACAGATGTCATGTT+TGG	-	chr3_1:41732330-41732349	None:intergenic	30.0%
CGAAATCTTGTTAAAGTTGT+TGG	+	chr3_1:41731443-41731462	Msa0357840:intron	30.0%
TTATCAGTGGAAAGAAAAAC+AGG	+	chr3_1:41732058-41732077	Msa0357840:CDS	30.0%
TATCAGTGGAAAGAAAAACA+GGG	+	chr3_1:41732059-41732078	Msa0357840:CDS	30.0%
ACAATTACAGATGTCATGTT+TGG	-	chr3_1:41732330-41732349	None:intergenic	30.0%
GACAAGAAATTGCTGTCAAA+AGG	+	chr3_1:41731348-41731367	Msa0357840:CDS	35.0%
TGTCATGTTTGGTCTATCAT+CGG	-	chr3_1:41732319-41732338	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	41731332	41732621	41731332	ID=Msa0357840;Name=Msa0357840
chr3_1	mRNA	41731332	41732621	41731332	ID=Msa0357840-mRNA-1;Parent=Msa0357840;Name=Msa0357840-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.33\|0.25\|1\|0.66\|0.75\|4\|127\|246
chr3_1	exon	41731332	41731380	41731332	ID=Msa0357840-mRNA-1:exon:7244;Parent=Msa0357840-mRNA-1
chr3_1	exon	41731657	41731894	41731657	ID=Msa0357840-mRNA-1:exon:7245;Parent=Msa0357840-mRNA-1
chr3_1	exon	41731972	41732122	41731972	ID=Msa0357840-mRNA-1:exon:7246;Parent=Msa0357840-mRNA-1
chr3_1	exon	41732192	41732621	41732192	ID=Msa0357840-mRNA-1:exon:7247;Parent=Msa0357840-mRNA-1
chr3_1	CDS	41731332	41731380	41731332	ID=Msa0357840-mRNA-1:cds;Parent=Msa0357840-mRNA-1
chr3_1	CDS	41731657	41731894	41731657	ID=Msa0357840-mRNA-1:cds;Parent=Msa0357840-mRNA-1
chr3_1	CDS	41731972	41732122	41731972	ID=Msa0357840-mRNA-1:cds;Parent=Msa0357840-mRNA-1
chr3_1	CDS	41732192	41732494	41732192	ID=Msa0357840-mRNA-1:cds;Parent=Msa0357840-mRNA-1
chr3_1	three_prime_UTR	41732495	41732621	41732495	ID=Msa0357840-mRNA-1:three_prime_utr;Parent=Msa0357840-mRNA-1

Gene Sequence

>Msa0357840

GGTACATTGCTCGATGGACAAGAAATTGCTGTCAAAAGGCTTTCAAGGAATACATTTTCGAGTAAATTGTTAAATTGGTCTACACGCTTTAACATTTTATTTGGAATTGCTCGGGGCCTTCTTTATCTTCATCAAGATTCAAGATTAAGGATCATACACAGAGATCTAAAAGTCAGTAATATTTTATTAGACAGTGATATGAACCCAAAAATTTCAGATTTTGGCTTAGCTAGAATGTGTGGAGGTGATCAAATCGAGGGGAGAACAAACAGAATAGTTGGCACATACGGTTATATGGCACCAGAATATGCCACTGATGGATTATTTTCTATAAAATCAGATGTATTTAGCTTTGGCGTATTGTTGTTAGAAATTATCAGTGGAAAGAAAAACAGGGCACTTAGCTATCAAGAAAACGATCATAATCTTATTGGATATGCGTGGAGATTGTGGAAAGAGAGAACTCCACTCAAATTGATTGATGATTACTTAAGGGACTCGTGCATTGAATCTGAAGCATTGCGTTGCATTCAAATTGGTCTATTATGTCTACAACAACATCCCGATGATAGACCAAACATGACATCTGTAATTGTGATGTTAAGTAGTGAAGACACTTTACCTAAACCAAAAGAACCTGGTTTCTTAATTAAAAATATCTCAAGCGAAGGAGAGCCTTCTTCTGAAAGACAGACATCTTCTACAAATGAAGTAACTATATCACTAATAGGCCCTAGATAA

Protein sequence

>Msa0357840

GTLLDGQEIAVKRLSRNTFSSKLLNWSTRFNILFGIARGLLYLHQDSRLRIIHRDLKVSNILLDSDMNPKISDFGLARMCGGDQIEGRTNRIVGTYGYMAPEYATDGLFSIKSDVFSFGVLLLEIISGKKNRALSYQENDHNLIGYAWRLWKERTPLKLIDDYLRDSCIESEALRCIQIGLLCLQQHPDDRPNMTSVIVMLSSEDTLPKPKEPGFLIKNISSEGEPSSERQTSSTNEVTISLIGPR*